Michal Linial

Q: What Schools Are Affiliated With Michal Linial

Michal Linial is affiliated with the following schools: Weizmann Institute of Science, University of California, Los Angeles, Hebrew University of Jerusalem, Tel Aviv University, Stanford University

Michal Linial's AcademicInfluence.com Rankings

Michal Linial

Biology

#2752

World Rank

#4327

Historical Rank

Bioinformatics

#39

World Rank

#39

Historical Rank

Computational Biology

#44

World Rank

#44

Historical Rank

biology Degrees

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Biology

Why Is Michal Linial Influential?

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According to Wikipedia, Michal Linial is a Professor of Biochemistry and Bioinformatics at the Hebrew University of Jerusalem . Linial is the Director of The Sudarsky Center for Computational Biology at HUJI. Since 2015, she is head of the ELIXIR-Israel node .

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Michal Linial's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Using Bayesian networks to analyze expression data (2000) (3562)
Expander Graphs and their Applications (2006) (1719)
Insights into social insects from the genome of the honeybee Apis mellifera (2006) (1356)
The geometry of graphs and some of its algorithmic applications (1994) (1093)
Locality in Distributed Graph Algorithms (1992) (908)
A large-scale evaluation of computational protein function prediction (2013) (784)
Constant depth circuits, Fourier transform, and learnability (1989) (742)
The influence of variables on Boolean functions (1988) (687)
A Lower Bound for Radio Broadcast (1991) (345)
An optimal on-line algorithm for metrical task system (1992) (338)
An expanded evaluation of protein function prediction methods shows an improvement in accuracy (2016) (316)
Vesicular neurotransmitter transporters: from bacteria to humans. (1995) (308)
Novel Unsupervised Feature Filtering of Biological Data (2006) (303)
Homological Connectivity Of Random 2-Complexes (2006) (301)
Collective Coin Flipping (1989) (244)
An optimal online algorithm for metrical task systems (1987) (238)
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens (2019) (219)
Group connectivity of graphs - A nonhomogeneous analogue of nowhere-zero flow properties (1992) (214)
Viral adaptation to host: a proteome-based analysis of codon usage and amino acid preferences (2009) (209)
Lifts, Discrepancy and Nearly Optimal Spectral Gap* (2006) (208)
Distributive graph algorithms Global solutions from local data (1987) (207)
On the Hardness of Approximating the Chromatic Number (1993) (205)
The Moore Bound for Irregular Graphs (2002) (204)
A Deterministic Strongly Polynomial Algorithm for Matrix Scaling and Approximate Permanents (1998) (202)
Protein function annotation by homology-based inference (2009) (197)
ProtoMap: automatic classification of protein sequences and hierarchy of protein families (2000) (187)
ProtoMap: automatic classification of protein sequences and hierarchy of protein families (2000) (187)
Low diameter graph decompositions (1993) (177)
On metric ramsey-type phenomena (2003) (177)
Brain contains two forms of synaptic vesicle protein 2. (1993) (174)
Finite metric spaces: combinatorics, geometry and algorithms (2002) (165)
Cellular and molecular biology of the presynaptic nerve terminal. (1991) (157)
Improved Routing Strategies with Succinct Tables (1990) (151)
Efficient algorithms for accurate hierarchical clustering of huge datasets: tackling the entire protein space (2008) (150)
Polysaccharide-oligoamine based conjugates for gene delivery. (2002) (149)
Efficient Calculation of Interval Scores for DNA Copy Number Data Analysis (2005) (146)
The influence of variables in product spaces (1992) (145)
The SARS-CoV-2 Exerts a Distinctive Strategy for Interacting with the ACE2 Human Receptor (2020) (136)
Approximate Inclusion-Exclusion (1990) (135)
Minimal non-two-colorable hypergraphs and minimal unsatisfiable formulas (1986) (133)
Collective coin flipping, robust voting schemes and minima of Banzhaf values (1985) (132)
Complexity measures of sign matrices (2007) (132)
ProtoMap: Automatic classification of protein sequences, a hierarchy of protein families, and local maps of the protein space (1999) (132)
ProtoMap: Automatic classification of protein sequences, a hierarchy of protein families, and local maps of the protein space (1999) (132)
Compact distributed data structures for adaptive routing (1989) (132)
Nonlinear optical measurement of membrane potential around single molecules at selected cellular sites. (1999) (131)
Lower bounds in communication complexity based on factorization norms (2007) (129)
No justified complaints: on fair sharing of multiple resources (2011) (124)
Are Stable Instances Easy? (2009) (122)
On the design and analysis of protein folding potentials (2000) (121)
Hard enumeration problems in geometry and combinatorics (1986) (120)
Structure and chromosomal localization of the mammalian agrin gene (1992) (119)
Approximate protein structural alignment in polynomial time. (2004) (118)
From average case complexity to improper learning complexity (2013) (109)
Cooperativity within proximal phosphorylation sites is revealed from large-scale proteomics data (2010) (106)
Apoptotic cell thrombospondin-1 and heparin-binding domain lead to dendritic-cell phagocytic and tolerizing states. (2006) (105)
ProteinBERT: a universal deep-learning model of protein sequence and function (2021) (103)
Results on learnability and the Vapnik-Chervonenkis dimension (1988) (101)
Rubber bands, convex embeddings and graph connectivity (1988) (99)
The language of proteins: NLP, machine learning & protein sequences (2021) (99)
Direct Interaction of a Brain Voltage-Gated K+Channel with Syntaxin 1A: Functional Impact on Channel Gating (2001) (99)
ProtoNet: hierarchical classification of the protein space (2003) (98)
ProtoNet: hierarchical classification of the protein space (2003) (98)
Hydrophobized dextran-spermine conjugate as potential vector for in vitro gene transfection. (2004) (95)
Voltage‐Dependent Interaction Between the Muscarinic ACh Receptor and Proteins of the Exocytic Machinery (1997) (92)
SNARE Proteins‐Why So Many, Why So Few? (1997) (89)
Collapsibility and Vanishing of Top Homology in Random Simplicial Complexes (2010) (88)
Global self-organization of all known protein sequences reveals inherent biological signatures. (1997) (84)
Global self-organization of all known protein sequences reveals inherent biological signatures. (1997) (84)
The Influence of Variables on Boolean Functions (Extended Abstract) (1988) (83)
Nucleotide bindind by the synapse associated protein SAP90 (1995) (82)
Significantly Improved COVID-19 Outcomes in Countries with Higher BCG Vaccination Coverage: A Multivariable Analysis (2020) (81)
On the phase transition in random simplicial complexes (2014) (77)
The One-Round Voronoi Game (2002) (76)
Sphere packing and local majorities in graphs (1993) (76)
Inclusion-exclusion: Exact and approximate (1996) (75)
ProtoNet 4.0: A hierarchical classification of one million protein sequences (2004) (72)
ProtoNet 4.0: A hierarchical classification of one million protein sequences (2004) (72)
On the cover time of random walks on graphs (1989) (72)
ProFET: Feature engineering captures high-level protein functions (2015) (71)
Anxiety induced by prenatal stress is associated with suppression of hippocampal genes involved in synaptic function (2007) (70)
Advancing Cell Biology Through Proteomics in Space and Time (PROSPECTS)* (2012) (70)
Random Graph Coverings I: General Theory and Graph Connectivity (2002) (69)
Decomposing graphs into regions of small diameter (1991) (69)
Searching Ordered Structures (1985) (69)
Learning Complexity vs. Communication Complexity (2008) (68)
Direct Interaction of Target SNAREs with the Kv2.1 Channel (2003) (66)
Competitive Optimal On-Line Leasing (1999) (65)
Biased random walks (1992) (65)
The influence of large coalitions (1993) (65)
Fault-tolerant computation in the full information model (1991) (63)
Spectral properties of threshold functions (1994) (63)
The Information-Theoretic Bound is Good for Merging (1984) (62)
Efficient construction of a small hitting set for combinatorial rectangles in high dimension (1993) (61)
VAT 1: An abundant membrane protein from torpedo cholinergic synaptic vesicles (1989) (61)
How Neighborly Can a Centrally Symmetric Polytope Be? (2005) (60)
On convex body chasing (1993) (60)
Is GAS1 a co-receptor for the GDNF family of ligands? (2006) (60)
Codon usage is associated with the evolutionary age of genes in metazoan genomes (2009) (59)
Codon usage is associated with the evolutionary age of genes in metazoan genomes (2009) (59)
Word maps and spectra of random graph lifts (2008) (58)
Prenatal stress diminishes gender differences in behavior and in expression of hippocampal synaptic genes and proteins in rats (2011) (56)
Random lifts of graphs: Independence and chromatic number (2002) (56)
ClanTox: a classifier of short animal toxins (2009) (55)
Human genes escaping X-inactivation revealed by single cell expression data (2018) (55)
Extending the Greene-Kleitman Theorem to Directed Graphs (1981) (54)
On the distance distribution of codes (1995) (54)
Non-Expansive Hashing (1996) (54)
Some extremal problems arising from discrete control processes (1989) (52)
Combinatorial characterization of read-once formulae (1993) (52)
MiRror: a combinatorial analysis web tool for ensembles of microRNAs and their targets (2010) (51)
Gene overlapping and size constraints in the viral world (2016) (51)
The metric space of proteins-comparative study of clustering algorithms (2002) (50)
Some Low Distortion Metric Ramsey Problems (2004) (50)
Game-theoretic aspects of computing (1994) (50)
The metric space of proteins-comparative study of clustering algorithms (2002) (50)
Eigenvectors of random graphs: Nodal Domains (2007) (50)
Protection of Pancreatic β-Cells from Various Stress Conditions Is Mediated by DJ-1* (2010) (49)
Culturing neuronal cells on surfaces coated by a novel polyethyleneimine-based polymer. (2000) (49)
ProtoNet 6.0: organizing 10 million protein sequences in a compact hierarchical family tree (2011) (48)
ProtoNet 6.0: organizing 10 million protein sequences in a compact hierarchical family tree (2011) (48)
Conservation of the relative tRNA composition in healthy and cancerous tissues. (2012) (47)
Methodologies for target selection in structural genomics. (2000) (46)
Efficient calculation of interval scores for DNA copy number data analysis. (2006) (46)
Cholinergic properties of neurons differentiated from an embryonal carcinoma cell-line (P19) (1995) (46)
Giant Viruses—Big Surprises (2019) (46)
Every Poset Has a Central Element (1985) (46)
Depolarization Affects the Binding Properties of Muscarinic Acetylcholine Receptors and Their Interaction with Proteins of the Exocytic Apparatus* (1999) (45)
Random Lifts of Graphs: Edge Expansion (2006) (45)
More data speeds up training time in learning halfspaces over sparse vectors (2013) (44)
A functional hierarchical organization of the protein sequence space (2004) (44)
On the complexity of radio communication (1989) (44)
Torpedo synaptophysin: evolution of a synaptic vesicle protein (1990) (43)
Toward a combinatorial nature of microRNA regulation in human cells (2012) (43)
Graph products and chromatic numbers (1989) (43)
A lower bound for the circumference of a graph (1976) (43)
Additive bases of vector spaces over prime fields (1991) (42)
Quaternary ammonium polysaccharides for gene delivery. (2005) (42)
Random lifts of graphs (2001) (41)
Graph Colouring with No Large Monochromatic Components (2007) (41)
Random Lifts Of Graphs: Perfect Matchings (2005) (40)
Girth and euclidean distortion (2002) (40)
A Note on the Inducibility of $$4$$4-Vertex Graphs (2013) (39)
On the uniform-traffic capacity of single-hop interconnections employing shared directional multichannels (1993) (39)
Invariants of Random Knots and Links (2014) (39)
Single Round Simulation on Radio Networks (1992) (39)
An upper bound on the number of Steiner triple systems (2011) (38)
Legal coloring of graphs (1983) (38)
An upper bound on the number of high-dimensional permutations (2011) (37)
When does the top homology of a random simplicial complex vanish? (2012) (37)
Ca2+-dependent exocytosis in mast cells is stimulated by the Ca2+ sensor, synaptotagmin I. (1998) (37)
PANDORA: keyword-based analysis of protein sets by integration of annotation sources. (2003) (36)
The Equivalence of Two Problems on the Cube (1992) (36)
Matroidal bijections between graphs (1988) (36)
Interpolation Between Bases and the Shuffle Exchange Network (1989) (36)
Novel families of toxin-like peptides in insects and mammals: a computational approach. (2007) (35)
Acceleration of neuronal maturation of P19 cells by increasing culture density. (1997) (34)
EVEREST: automatic identification and classification of protein domains in all protein sequences (2006) (33)
Incidence Matrices of Subsets—A Rank Formula (1981) (33)
EVEREST: automatic identification and classification of protein domains in all protein sequences (2006) (33)
Clustering is difficult only when it does not matter (2012) (32)
PWAS: proteome-wide association study—linking genes and phenotypes by functional variation in proteins (2020) (32)
Functional annotation prediction: All for one and one for all (2006) (32)
On the practically interesting instances of MAXCUT (2012) (32)
Fast perfect-information leader-election protocols with linear immunity (1993) (32)
COMPACT: A Comparative Package for Clustering Assessment (2005) (32)
Internal Partitions of Regular Graphs (2013) (32)
Deciphering neuronal secretion: tools of the trade. (1996) (32)
PWAS: proteome-wide association study—linking genes and phenotypes by functional variation in proteins (2020) (32)
Balancing extensions via Brunn-Minkowski (1991) (31)
Covering digraphs by paths (1978) (31)
Viral Proteins Acquired from a Host Converge to Simplified Domain Architectures (2012) (31)
Generative probabilistic models for protein–protein interaction networks—the biclique perspective (2011) (31)
How incorrect annotations evolve--the case of short ORFs. (2003) (31)
Generative probabilistic models for protein–protein interaction networks—the biclique perspective (2011) (31)
NeuroPID: a predictor for identifying neuropeptide precursors from metazoan proteomes (2014) (30)
A Map of the Protein Space: An Automatic Hierarchical Classification of all Protein Sequences (1998) (29)
A Map of the Protein Space: An Automatic Hierarchical Classification of all Protein Sequences (1998) (29)
Bounds on Universal Sequences (1989) (29)
On the Vertices of the d-Dimensional Birkhoff Polytope (2012) (28)
Involvement of extracellular signal-regulated kinase (ERK) in pardaxin-induced dopamine release from PC12 cells. (2001) (28)
On Regular Hypergraphs of High Girth (2013) (28)
Optima of dual integer linear programs (1988) (28)
The complete peptide dictionary – A meta‐proteomics resource (2010) (27)
Working together: combinatorial regulation by microRNAs. (2013) (27)
Gigantic optical non‐linearities from nanoparticle‐enhanced molecular probes with potential for selectively imaging the structure and physiology of nanometric regions in cellular systems (1996) (26)
Neighborhood preserving hashing and approximate queries (1994) (26)
Cycles of length 0 modulo k in directed graphs (1989) (26)
Random Graph Coverings I (2000) (26)
The threshold for d‐collapsibility in random complexes* (2013) (26)
The Linear-Array Conjecture in Communication Complexity Is False (1996) (25)
VAT‐1 from Torpedo is a membranous homologue of zeta crystallin (1993) (25)
MODAL REGULATION OF CHANNEL ACTIVATION AND INACTIVATION GATING (2003) (25)
PROCEED: A proteomic method for analysing plasma membrane proteins in living mammalian cells. (2003) (25)
Unsupervised feature selection under perturbations: meeting the challenges of biological data (2007) (25)
Monotone maps, sphericity and bounded second eigenvalue (2004) (24)
Pardaxin stimulation of phospholipases A2 and their involvement in exocytosis in PC-12 cells. (2002) (24)
Bladder Cancer Immunotherapy by BCG Is Associated with a Significantly Reduced Risk of Alzheimer’s Disease and Parkinson’s Disease (2021) (24)
Speed Controls in Translating Secretory Proteins in Eukaryotes - an Evolutionary Perspective (2014) (24)
Witness Sets for Families of Binary Vectors (1996) (24)
Least-Distortion Euclidean Embeddings of Graphs: Products of Cycles and Expanders (2000) (23)
Selecting targets for structural determination by navigating in a graph of protein families (2002) (22)
Cellular processes underlying maturation of P19 neurons: Changes in protein folding regimen and cytoskeleton organization (2007) (22)
Expression and localization of synaptotagmin I in rat parotid gland. (1997) (21)
EVEREST: a collection of evolutionary conserved protein domains (2006) (21)
Estimating the probability for a protein to have a new fold: A statistical computational model. (2000) (21)
EVEREST: a collection of evolutionary conserved protein domains (2006) (21)
Minors in lifts of graphs (2006) (20)
Sum Complexes—a New Family of Hypertrees (2009) (20)
Evolution of insect proteomes: insights into synapse organization and synaptic vesicle life cycle (2008) (20)
Targeted in situ cross-linking mass spectrometry and integrative modeling reveal the architectures of three proteins from SARS-CoV-2 (2021) (20)
miRror-Suite: decoding coordinated regulation by microRNAs (2014) (19)
Low dimensional embeddings of ultrametrics (2004) (19)
Girth and Euclidean distortion (2002) (19)
Design of multispecific protein sequences using probabilistic graphical modeling (2010) (19)
Global Considerations in Hierarchical Clustering Reveal Meaningful Patterns in Data (2008) (19)
Multi-layer grid embeddings (1985) (19)
Local-Global Phenomena in Graphs (1993) (18)
ProtoBee: hierarchical classification and annotation of the honey bee proteome. (2006) (18)
Sequence-directed bent DNA helix is the specific binding site for Crithidia fasciculata nicking enzyme. (1987) (18)
Games Computers Play: Game-Theoretic Aspects of Computing (1992) (18)
On the 3‐Local Profiles of Graphs (2012) (18)
Constructing expander graphs by 2-lifts and discrepancy vs. spectral gap (2003) (18)
On the Local Profiles of Trees (2013) (17)
A nicking enzyme from trypanosomatids which specifically affects the topological linking of duplex DNA circles. Purification and characterization. (1986) (17)
A physical interpretation of graph connectivity, and its algorithmic applications (1986) (17)
Quantifying gene selection in cancer through protein functional alteration bias (2019) (17)
The protein VAT-1 from Torpedo electric organ exhibits an ATPase activity (1993) (17)
Extended fertility and longevity: the genetic and epigenetic link. (2015) (17)
Quantifying gene selection in cancer through protein functional alteration bias (2019) (17)
A counterexample to a conjecture of Björner and Lovász on the chi-coloring complex (2004) (17)
Recovering key biological constituents through sparse representation of gene expression (2011) (16)
The Euclidean Distortion of Complete Binary Trees (2002) (16)
Recovering key biological constituents through sparse representation of gene expression (2011) (16)
The Advantage of Functional Prediction Based on Clustering of Yeast Genes and Its Correlation with Non-Sequence Based Classifications (2002) (16)
Trees and Euclidean metrics (1998) (16)
ASAP: a machine learning framework for local protein properties (2016) (16)
A Unique SARS-CoV-2 Spike Protein P681H Variant Detected in Israel (2021) (16)
Graph coloring and monotone functions on posets (1986) (15)
A Unique Neurofilament from Torpedo Electric Lobe: Sequence, Expression, and Localization Analysis (1990) (15)
Bent DNA structures associated with several origins of replication are recognized by a unique enzyme from trypanosomatids. (1988) (15)
Synaptic proteins as multi-sensor devices of neurotransmission (2006) (15)
Largest digraphs contained in alln-tournaments (1983) (15)
Short Toxin-like Proteins Attack the Defense Line of Innate Immunity (2013) (14)
Open problems in human trait genetics (2021) (14)
The Counterfeit Coin Problem Revisited (1982) (14)
Highly sensitive ELISA-based assay for quantifying protein levels in neuronal cultures. (1998) (14)
Age-Induced Spatial Memory Deficits in Rats Are Correlated with Specific Brain Region Alterations in Microglial Morphology and Gene Expression (2018) (14)
Gene expression in women conceiving spontaneously over the age of 45 years. (2008) (14)
A robust method to detect structural and functional remote homologues (2004) (14)
ProtoNet: charting the expanding universe of protein sequences (2013) (14)
ProtoNet: charting the expanding universe of protein sequences (2013) (14)
Deciding Hypergraph 2-Colourability by H-Resolution (1985) (14)
A unique endonuclease from Crithidia fasciculata which recognizes a bend in the DNA helix. Specificity of the cleavage reaction. (1988) (13)
Expander Graphs — Both Local and Global (2018) (13)
On the weight distribution of random binary linear codes (2018) (13)
DISCREPANCY AND NEARLY OPTIMAL SPECTRAL GAP * (13)
Enumeration and randomized constructions of hypertrees (2018) (13)
Some Bounds for the Banzhaf Index and Other Semivalues (1988) (13)
Low distortion euclidean embeddings of trees (1998) (13)
Enhancing identification of cancer types via lowly-expressed microRNAs (2017) (13)
Enhancing identification of cancer types via lowly-expressed microRNAs (2017) (13)
Automatic detection of false annotations via binary property clustering (2005) (13)
Substantial batch effects in TCGA exome sequences undermine pan-cancer analysis of germline variants (2018) (12)
Evolutional insights on uncharacterized SARS coronavirus genes (2004) (12)
Essential covers of the cube by hyperplanes (2005) (12)
The Complexity of Learning Halfspaces using Generalized Linear Methods (2012) (12)
Information bounds are good for search problems on ordered data structures (1983) (12)
On the Number of 4‐Cycles in a Tournament (2014) (12)
Discrepancy of High-Dimensional Permutations (2015) (12)
On the densities of cliques and independent sets in graphs (2012) (12)
Families of membranous proteins can be characterized by the amino acid composition of their transmembrane domains (2005) (12)
Small RNA sequences derived from pre-microRNAs in the supraspliceosome (2018) (12)
Metric Embeddings—Beyond One-Dimensional Distortion (2004) (12)
The Expected Genus of a Random Chord Diagram (2009) (12)
Predicting fold novelty based on ProtoNet hierarchical classification (2005) (11)
On Metric Ramsey‐Type Dichotomies (2004) (11)
Chernoff's Inequality - A very elementary proof (2014) (11)
On High-Dimensional Acyclic Tournaments (2013) (11)
On The Communication Complexity of High-Dimensional Permutations (2017) (11)
Differential expression pattern of Rab-GDI isoforms during the parotid gland secretion cycle. (1997) (11)
Improved sensitivity, safety, and rapidity of COVID-19 tests by replacing viral storage solution with lysis buffer (2020) (11)
The automated function prediction SIG looks back at 2013 and prepares for 2014 (2014) (11)
A unique SARS-CoV-2 spike protein P681H strain detected in Israel (2021) (11)
Sharing of antigenic epitopes between synaptophysin and granulophysin (1992) (11)
An optical submicrometer calcium sensor with conductance sensing capability. (1997) (11)
Clustering Algorithms Optimizer: A Framework for Large Datasets (2007) (11)
SUVi and BACH1: a new subfamily of mammalian helicases? (2001) (10)
SPRINT: side-chain prediction inference toolbox for multistate protein design (2010) (10)
ARISTO: ontological classification of small molecules by electron ionization-mass spectrometry (2011) (10)
VAT-1 from Torpedo electric organ forms a high-molecular-mass protein complex within the synaptic vesicle membrane. (1993) (10)
The dynamics of reputation systems (2011) (10)
NeuroPID: a classifier of neuropeptide precursors (2014) (10)
Proline clustering in proteins from synaptic vesicles. (1994) (10)
PANDORA: analysis of protein and peptide sets through the hierarchical integration of annotations (2010) (10)
Dual integer linear programs and the relationship between their optima (1985) (10)
Triply Existentially Complete Triangle‐Free Graphs (2013) (10)
Imperfect random sources and discrete controlled processes (1987) (10)
When Less Is More: Improving Classification of Protein Families with a Minimal Set of Global Features (2007) (9)
A predictor for toxin-like proteins exposes cell modulator candidates within viral genomes (2010) (9)
Spliceosome-Associated microRNAs Signify Breast Cancer Cells and Portray Potential Novel Nuclear Targets (2020) (9)
α‐Latrotoxin is a Potent Inducer of Neurotransmitter Release in Torpedo Electric Organ—Functional and Morphological Characterization (1995) (9)
Bacterial neurotoxins--a thousand years later. (1995) (9)
Vesicular transporters join the major facilitator superfamily (MFS) (1993) (9)
Exposing the co-adaptive potential of protein-protein interfaces through computational sequence design (2010) (9)
Monotone Subsequences in High-Dimensional Permutations (2016) (9)
Random Vectors of Bounded Weight and Their Linear Dependencies (2000) (9)
Expression and localization of muscarinic receptors in P19-derived neurons (1998) (9)
Coordinated expression of cytoskeleton regulating genes in the accelerated neurite outgrowth of P19 embryonic carcinoma cells. (2008) (9)
Linear Codes and Character Sums (2002) (9)
Overlooked Short Toxin-Like Proteins: A Shortcut to Drug Design (2017) (9)
ProTeus: identifying signatures in protein termini (2005) (9)
Efficient algorithms for exact hierarchical clustering of huge datasets : Tackling the entire protein space (2008) (8)
Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition (2021) (8)
Local and Global Clique Numbers (1994) (8)
Serine substitutions are linked to codon usage and differ for variable and conserved protein regions (2019) (8)
On the expansion rate of Margulis expanders (2006) (8)
George MW, Gene ER. Insights into social insects from the genome of the honeybee Apis mellifera. Nature (2006) (8)
Body Mass Index and Birth Weight Improve Polygenic Risk Score for Type 2 Diabetes (2021) (8)
Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition (2021) (8)
Characteristics of myeloproliferative neoplasms in patients exposed to ionizing radiation following the Chernobyl nuclear accident (2018) (7)
Expansion of tandem repeats in sea anemone Nematostella vectensis proteome: A source for gene novelty? (2009) (7)
Functional grouping based on signatures in protein termini (2006) (7)
A lower bound on the area of permutation layouts (1991) (7)
Compact Distributed Data Structures for Adaptive Routing (Extended Abstract) (1989) (7)
The Rise and Fall of a Local SARS-CoV-2 Variant with the Spike Protein Mutation L452R (2021) (7)
VAT-1 fromTorpedo synaptic vesicles is a calcium binding protein: a study in bacterial expression systems (1993) (6)
The Secrets of a Functional Synapse – From a Computational and Experimental Viewpoint (2006) (6)
An Extremal Problem on Degree Sequences of Graphs (2002) (6)
ProTarget: automatic prediction of protein structure novelty (2005) (6)
Expander Graphs and their Applications Draft-not for distribution (2006) (6)
Effect of ladostigil treatment of aging rats on gene expression in four brain areas associated with regulation of memory (2020) (6)
Raalin, a transcript enriched in the honey bee brain, is a remnant of genomic rearrangement in hymenoptera (2012) (6)
A Continuous Analogue of the Girth Problem (2002) (6)
Limitations to Fréchet’s metric embedding method (2004) (6)
Connect the dots: exposing hidden protein family connections from the entire sequence tree (2008) (5)
Bioinformatics Research and Development (2008) (5)
On the Complexity of Radio Communication (Extended Abstract) (1989) (5)
The effect of calcium levels on synaptic proteins. A study on VAT-1 from Torpedo (1995) (5)
ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus (2015) (5)
Short Toxin-like Proteins Abound in Cnidaria Genomes (2012) (5)
Oblivious Collaboration (2011) (5)
SNARE Proteins - From Membranes to Genomes (2001) (5)
Graphs with Few 3‐Cliques and 3‐Anticliques are 3‐Universal (2013) (5)
On the Lipschitz constant of the RSK correspondence (2010) (5)
Locating Transcription Factors Binding Sites Using a Variable Memory Markov Model (2002) (5)
The sequence-directed bent structure in kinetoplast DNA is recognized by an enzyme from Crithidia fasciculata. (1987) (5)
The alpha-latrotoxin is a potent inducer of neurotransmitter release in Torpedo electric organ - functional and morphological characterization (1995) (5)
Extremal problems on permutations under cyclic equivalence (1987) (5)
Culture density regulates both the cholinergic phenotype and the expression of the CNTF receptor in P19 neurons (1997) (5)
Asymptotically Almost Every 2r-Regular Graph Has an Internal Partition (2017) (5)
Susceptibility of the human pathways graphs to fragmentation by small sets of microRNAs (2012) (5)
On the predictive power of sequence similarity in yeast (2001) (4)
miRNA Combinatorics and its Role in Cell State Control—A Probabilistic Approach (2021) (4)
Expanding cancer predisposition genes with ultra-rare cancer-exclusive human variations (2020) (4)
Trends in genome dynamics among major orders of insects revealed through variations in protein families (2015) (4)
Secretory Systems and Toxins (1998) (4)
Expanding cancer predisposition genes with ultra-rare cancer-exclusive human variations (2020) (4)
Random Lifts of Graphs II : Edge (2000) (4)
miRNA Combinatorics and its Role in Cell State Control—A Probabilistic Approach (2021) (4)
Tight products and graph expansion (2010) (4)
Entropy-driven partitioning of the hierarchical protein space (2014) (4)
Ladostigil Attenuates Induced Oxidative Stress in Human Neuroblast-like SH-SY5Y Cells (2021) (4)
Entropy-driven partitioning of the hierarchical protein space (2014) (4)
A cell-based probabilistic approach unveils the concerted action of miRNAs (2018) (3)
PWAS: Proteome-Wide Association Study (2019) (3)
Functional Consequences in Metabolic Pathways from Phylogenetic Profiles (2002) (3)
Single Cell Expression Data Reveal Human Genes that Escape X-Chromosome Inactivation (2016) (3)
UFFizi: a generic platform for ranking informative features (2010) (3)
De novo STXBP1 mutation in a child with developmental delay and spasticity reveals a major structural alteration in the interface with syntaxin 1A (2020) (3)
PWAS: Proteome-Wide Association Study (2019) (3)
A cell-based probabilistic approach unveils the concerted action of miRNAs (2018) (3)
Largest induced suborders satisfying the chain condition (1985) (3)
A randomized construction of high girth regular graphs (2019) (3)
Targeted in situ cross-linking mass spectrometry and integrative modeling reveal the architectures of Nsp1, Nsp2, and Nucleocapsid proteins from SARS-CoV-2 (2021) (3)
Eigenvectors of random graphs (2007) (2)
Implicit biology in peptide spectral libraries. (2012) (2)
Neurotoxins as tools in dissecting the exocytic machinery. (2000) (2)
The Little Known Universe of Short Proteins in Insects: A Machine Learning Approach (2015) (2)
Random Lifts of Graphs I: General Theory and Graph Connectivity (2002) (2)
Identification of Hepatitis E Virus Genotypes 3 and 7 in Israel: A Public Health Concern? (2021) (2)
Paving the future: finding suitable ISMB venues (2012) (2)
On the Rigidity of Sparse Random Graphs (2015) (2)
Sphere Packing and Local (1993) (2)
On the potential of molecular computing. (1995) (2)
Functional inference by ProtoNet family tree: the uncharacterized proteome of Daphnia pulex (2013) (2)
ProtoNet : Navigating the Hierarchical Clustering of the Protein Space (2006) (2)
ProtoNet : Navigating the Hierarchical Clustering of the Protein Space (2006) (2)
Mirror2.0: a Platform for Assessing the Joint Action of microRNAs in Cell regulation (2013) (2)
Graph decompositions without isolates (1984) (2)
Allele Specific Expression in Human – Genomic Makeup and Phenotypic Implications (2019) (2)
Fishing With (Proto)Net—A Principled Approach to Protein Target Selection (2003) (2)
Protein Clustering and Classification (2004) (2)
On the potential of molecular computing. (1995) (2)
Inferring microRNA regulation: A proteome perspective (2022) (1)
Bioinformatics Research and Development, Proceedings (2008) (1)
Chromoanagenesis Landscape in 10,000 TCGA Patients (2021) (1)
Functional inference by ProtoNet family tree: the uncharacterized proteome of Daphnia pulex (2013) (1)
An improved protocol for the exactly-N problem* (2021) (1)
ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus (2015) (1)
A Continuous Analogue of the Girth ProblemAlon Amit (2001) (1)
Chromosome X factors and phenotype variability (2019) (1)
Giant Viruses – Big Surprises (2019) (1)
ProtoBug: functional families from the complete proteomes of insects (2015) (1)
Colorings of the d-regular infinite tree (2004) (1)
Musical Chairs (2012) (1)
The FABRIC Cancer Portal: A Ranked Catalogue of Gene Selection in Tumors over the Human Coding Genome. (2020) (1)
Turning Data to Knowledge: Online Tools, Databases, and Resources in microRNA Research. (2022) (1)
On the Hardness of Approximating the Chromati Number (1993) (1)
On Petersen's graph theorem (1981) (1)
Revisiting the Risk Factors for Endometriosis: A Machine Learning Approach (2022) (1)
Unveiling the molecular events leading to a neurotransmitter phenotype switch in developing neurons (2004) (1)
A counterexample to a conjecture of Lov\'asz on the $\chi$-coloring complex (2004) (1)
Evolutionary and functional lessons from human-specific amino acid substitution matrices (2020) (1)
BIRD: identifying cell doublets via biallelic expression from single cells (2019) (1)
Mass Informatics: From Mass Spectrometry Peaks to Biological Pathways (2013) (1)
The rise and fall of an emerging SARS-CoV-2 variant with the spike protein mutation L452R (2021) (1)
Ramanujan Signing of Regular Graphs (2004) (1)
Combinatorics, Geometry and Probability: Local-Global Phenomena in Graphs (1997) (0)
In Search of Hyperpaths (2022) (0)
Tight products and Expansion (2010) (0)
Human genes escaping X-inactivation revealed by single cell expression data (2019) (0)
Overlapping Genes and Size Constraints in Viruses - An Evolutionary Perspective (2015) (0)
Synaptophysin and granulophysin share a common epitope — A study by monoclonal antibodies (1991) (0)
ISMB 2008 Organization (2008) (0)
Bladder Cancer Immunotherapy by BCG is associated with a significantly reduced risk of Alzheimer disease (2021) (0)
receptor andproteins oftheexocytic machinery (2011) (0)
The Translation Machinery Is Immune from miRNA Perturbations: A Cell-Based Probabilistic Approach (2018) (0)
Functional Evolutionary Modeling Exposes Overlooked Protein-Coding Genes Involved in Cancer (2020) (0)
A Unique Endonuclease from Crithidia fusciculata Which Recognizes a Bend in the DNA Helix (2001) (0)
Recessive and sex-dependent genetic effects in primary hypertension (2022) (0)
Functionally-Valid Unsupervised Compression of the Protein Space (2004) (0)
Muscarinic ach receptor interacts with the exocytic machinery in a voltage-dependent manner (1997) (0)
Special RECOMB 2002 Issue (2004) (0)
Central points for sets in ℝn (or: the chocolate ice-cream problem) (1996) (0)
Bioinformatics Research and Development, Second International Conference, BIRD 2008, Vienna, Austria, July 7-9, 2008, Proceedings (2008) (0)
Polymeric vectors for gene therapy - synthesis and biological activity of polysaccharide based polycations (2001) (0)
ISCB/SPRINGER series in computational biology (2013) (0)
Overlapping genes in viruses: seeking a unified theory (2015) (0)
Sensitivity of Gene Sets to miRNA Regulation: A Cell-Based Probabilistic Approach (2020) (0)
Geometric Interpretation of Gene Expression by Sparse Reconstruction of Transcript Profiles (2011) (0)
Translation Efficiency of Synaptic Proteins and Its Coding Sequence Determinants (2018) (0)
The ELIXIR training platform: highlights and overview (2016) (0)
Market Share Indicates Quality (2011) (0)
An Information-Theoretic Approach to the Supervised Partitioning of the Hierarchical Protein Space (2004) (0)
Geometric Interpretation of Gene Expression by Sparse Reconstruction of Transcript Profiles (2011) (0)
Collapsibility and Vanishing of Top Homology in Random Simplicial Complexes (2012) (0)
ISMB 2008 Toronto (2008) (0)
Recessive effects in cancer predisposition exposed by genome-wide and proteome-wide association studies (2020) (0)
Colorings of the d-regular in nite treeShlomo Hoory (2002) (0)
PWAS: proteome-wide association study—linking genes and phenotypes by functional variation in proteins (2020) (0)
Modeling Functional Genetic Alteration in Cancer Reveals New Candidate Driver Genes (2018) (0)
Mining and Information Extraction Novel Unsupervised Feature Filtering of Biological Data (2006) (0)
A Note on the Influence of an epsilon-Biased Random Source (1999) (0)
An upper bound on the number of high-dimensional permutations (2014) (0)
Lowest expressing microRNAs capture indispensable information: identifying cancer types (2016) (0)
Recessive effects in cancer predisposition exposed by genome-wide and proteome-wide association studies (2020) (0)
Functional Evolutionary Modeling Exposes Overlooked Protein-Coding Genes Involved in Cancer (2020) (0)
LEGAL COLORING OF N (2007) (0)
The Translation Machinery Is Immune from miRNA Perturbations: A Cell-Based Probabilistic Approach (2018) (0)
Probabilities for having a new fold on the basis of a map of all protein sequences (2000) (0)
Modeling Functional Genetic Alteration in Cancer Reveals New Candidate Driver Genes (2018) (0)
Lowest expressing microRNAs capture indispensable information: identifying cancer types (2016) (0)
An upper bound on the number of high-dimensional permutations (2014) (0)
Strong convergence in posets (2012) (0)
CA2+-independent synaptic vesicle fusion induced by α-latrotoxin in P19 developing neurons (1997) (0)
Sensitivity of Gene Sets to miRNA Regulation: A Cell-Based Probabilistic Approach (2020) (0)
Ju l 2 01 7 On regular hypergraphs of high girth (2018) (0)
Peer Review #1 of "TOXIFY: a deep learning approach to classify animal venom proteins (v0.1)" (2019) (0)
Twist boundary energies for metals with long-ranged pairwise interatomic potentials (1983) (0)
萃 Clustering [ Gathering Together , Amassing ] (2006) (0)
High-dimensional permutations and discrepancy (2016) (0)
Gene overlapping and size constraints in the viral world (2016) (0)
Assessment of Protein Domain Classifications: SCOP, CATH, Dali and EVEREST (2007) (0)
The ability to spontaneously conceive after 45 years of age is associated with an exceptionally low rate of spontaneous abortions and a distinct pattern of apoptosis/anti apoptosis gene expression pattern (2004) (0)
On the Vertices of the d-Dimensional Birkhoff Polytope (2013) (0)
Interactions between voltage-dependent Ca2+ channels and the muscarinic ACH receptor in functional synaptosomes (1997) (0)
Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computional Biology 2004 (ISMB/ECCB 2004) (2004) (0)
False Annotations of Proteins: Automatic Detection via Keyword-Based Clustering (2004) (0)
Oxidative Stress and Its Modulation by Ladostigil Alter the Expression of Abundant Long Non-Coding RNAs in SH-SY5Y Cells (2022) (0)
Irreducible nonmetrizable path systems in graphs (2021) (0)
A shortcut from large-scale genomic data to protein structure and function (2018) (0)
Structure from sequence : A view based on a global organization of the protein space (2003) (0)
Open problems in human trait genetics (2022) (0)
An Information-Theoretic Approach to the Supervised Partitioning of the Hierarchical Protein Space (2004) (0)
ProFET: Protein Feature Engineering Toolkit captures high-level protein functions (2015) (0)
SEQUENCE VARIANTS IN PATIENTS WITH MYELOPROLIFERATIVE NEOPLASMS POTENTIALLY INDUCED BY IONIZING RADIATION DUE TO CHERNOBYL NUCLEAR ACCIDENT (2019) (0)
Homologies of the Uncharacterized SARS Coronavirus Genes (2004) (0)
Spliceosome-Associated MicroRNAs Identified in Breast Cancer Cells Act on Nuclear Targets and Are Potential Indicators for Tumorigenicity (2020) (0)
בעיות פירוק וכיסוי בתורת הגרפים (Decomposition and covering problems in graph theory.) (1978) (0)
The error rate of learning halfspaces using Kernel-SVMs (2012) (0)
Structural analysis of de novo STXBP1 mutation in complex with syntaxin 1A reveals a major alteration in the interaction interface in a child with developmental delay and spasticity (2019) (0)
Random Lifts of Graphs I : General Theory and Graph Conne tivityAlon (2007) (0)
Structural alignment from sequence alone by integration of predicted secondary structure (2007) (0)
S.04.04 Abnormalities in behaviour and reduction in expression of specific hippocampal genes genes by prenatal stress in female offspring are reversed by neonatal handling (2006) (0)
Unified Predictive Model for Endometriosis: Merging Clinical, Self-reporting and Genetic Information (2022) (0)
Reduced Mortality During Holidays and the COVID-19 Pandemic in Israel (2020) (0)
A King in every two consecutive tournaments (2019) (0)
Synaptotagmin I Sensor, 2+ Mast Cells Is Stimulated by the Ca -Dependent Exocytosis in 2+ Cutting Edge: Ca (1998) (0)
Safe Functional Inference for Uncharacterized Viral Proteins (2008) (0)
ASAP: A Machine-Learning Framework for Local Protein Properties (2015) (0)
Ladostigil attenuates the oxidative and ER stress in human neuroblast-like SH-SY5Y cells (2021) (0)
The Non-Crossing Graph (2006) (0)
Automatic Identification and Classification of Protein Domains (2005) (0)
Substantial batch effects in TCGA exome sequences undermine pan-cancer analysis of germline variants (2019) (0)
08101 Executive Summary and Abstracts Collection Computational Proteomics (2008) (0)
08101 Abstracts Collection - Computational Proteomics (2008) (0)
Assessment of Protein Domain Classifications: SCOP, CATH, Dali and EVEREST (2007) (0)
Functional Annotation and Protein Families: From Theory to Practice (2004) (0)
Age-Induced Spatial Memory Deficits in Rats Are Correlated with Specific Brain Region Alterations in Microglial Morphology and Gene Expression (2018) (0)
OPTIMA OF D U A L INTEGER LINEAR PROGRAMS (2005) (0)
Challenging Cellular Homeostasis: Spatial and Temporal Regulation of miRNAs (2022) (0)
Selecting Covariates for Genome-Wide Association Studies (2023) (0)
Random Graph Coverings I : General Theory and Graph Conne tivityAlon (2000) (0)
SPECTRUM OF AFFECTED GENES IN UKRAINIAN PATIENTS WITH PRIMARY MYELOFIBROSIS (2018) (0)
A PHYSICAL INTBRPRBTATION OF GRAPH CONNBCTNITY, AND ITS ALGORITHMIC APPLICATIONS (1986) (0)
Trends in genome dynamics among major orders of insects revealed through variations in protein families (2015) (0)
Alteration in long noncoding RNAs in response to oxidative stress and ladostigil in SH-SY5Y cells (2022) (0)
The Etiology of Hypothyroidism Is Revealed by Alternative Genetics Association Study Methodologies (2022) (0)
Automatic Identification and Classification of Protein Domains (2005) (0)
P.1.03 Prenatal stress affects expression of genes related to synaptic plasticity in male and female adult rats (2009) (0)
Comprar Bioinformatics Research and Development · Second International Conference, BIRD 2008, Vienna, Austria, July 7-9, 2008 Proceedings | Elloumi, Mourad | 9783540705987 | Springer (2008) (0)
Target selection for structural genomics based on ProtoNet classification (2003) (0)
Structure from sequence : A view based on a global organization of the protein space (2003) (0)
What are higher-dimensional permutations and how many are they? (2012) (0)
Gene-based association study reveals a distinct female genetic signal in primary hypertension. (2023) (0)
The FABRIC Cancer Portal: A Ranked Catalogue of Gene Selection in Tumors Over the Human Coding Genome (2020) (0)
M G ] 2 1 Ju n 20 04 Limitations to Fréchet ’ s Metric Embedding Method (2003) (0)
COLLECI1VECOIN FLIPPING, ROBUST VOTING SCHEMES AND MINIMA OF BANZHAF VALUFS (Preliminary Report) (1985) (0)
Overlapping genes in viruses: seeking a unified theory (2015) (0)
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens (2019) (0)
Profiles and Dynamics of the Transcriptome of Microglial Cells Reveal their Inflammatory Status (2021) (0)
Identification of a novel synaptic vesicle associated protein from torpedo electric organ (1997) (0)
Single cell expression data as a direct measure for identifying human genes that escape X-inactivation (2016) (0)
Low distortion Eu lidean embeddings of treesNathan (1999) (0)
Detecting Anomalous Proteins Using Deep Representations (2023) (0)
Revealing SARS-CoV-2 protein architectures through in-situ MS proteomics and integrative modeling (2021) (0)
PWAS: proteome-wide association study—linking genes and phenotypes by functional variation in proteins (2020) (0)

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