Michel Dumontier
Distinguished Professor of Data Science at Maastricht University
Why Is Michel Dumontier Influential?
(Suggest an Edit or Addition)According to Wikipedia, Michel Justin Dumontier is a Distinguished Professor of Data Science at Maastricht University. His research focuses on methods to represent knowledge on the web with applications for drug discovery and personalized medicine. He was previously an Associate Professor of Medicine at the Stanford University School of Medicine and an Associate Professor of Bioinformatics at Carleton University. He is best known for his work in biomedical ontologies, linked data and biomedical knowledge discovery. He has taught courses on biochemistry, bioinformatics, computational systems biology, and translational medicine. His research has been funded by Natural Sciences and Engineering Research Council, Canada Foundation for Innovation, Mitacs Canada, the Ontario Ministry of Research, Innovation and Science, CANARIE, and the US National Institutes of Health. Dumontier has an h-index of over 30 and has authored over 125 scientific publications in journals and conferences. He lives in Maastricht with his wife Tifany Irene Leung and their lionhead rabbit Storm.
Michel Dumontier's Published Works
Published Works
- The FAIR Guiding Principles for scientific data management and stewardship (2016) (5928)
- Controlled vocabularies and semantics in systems biology (2011) (304)
- Finding Our Way through Phenotypes (2015) (284)
- The Ontology for Biomedical Investigations (2009) (259)
- Cloudy, increasingly FAIR; revisiting the FAIR Data guiding principles for the European Open Science Cloud (2017) (234)
- The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery (2014) (169)
- A design framework and exemplar metrics for FAIRness (2017) (161)
- Bio2RDF Release 2: Improved Coverage, Interoperability and Provenance of Life Science Linked Data (2013) (139)
- FAIR Principles: Interpretations and Implementation Considerations (2020) (128)
- Achieving human and machine accessibility of cited data in scholarly publications (2015) (114)
- Toward a complete dataset of drug-drug interaction information from publicly available sources (2015) (112)
- Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data (2017) (110)
- Drug–drug interaction extraction via hierarchical RNNs on sequence and shortest dependency paths (2017) (108)
- Evaluating FAIR maturity through a scalable, automated, community-governed framework (2019) (103)
- The Chemical Information Ontology: Provenance and Disambiguation for Chemical Data on the Biological Semantic Web (2011) (100)
- Analysis of In Vitro Aptamer Selection Parameters (2015) (98)
- The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside (2011) (92)
- Evaluation of research in biomedical ontologies (2012) (86)
- Computational methods for predicting protein-protein interactions. (2008) (85)
- The center for expanded data annotation and retrieval (2015) (82)
- Interoperability and FAIRness through a novel combination of Web technologies (2017) (75)
- Addendum: The FAIR Guiding Principles for scientific data management and stewardship (2019) (75)
- Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis (2016) (74)
- Ontology-Based Querying with Bio2RDF’s Linked Open Data (2013) (72)
- Global investigation of protein–protein interactions in yeast Saccharomyces cerevisiae using re-occurring short polypeptide sequences (2008) (72)
- PubChemRDF: towards the semantic annotation of PubChem compound and substance databases (2015) (69)
- Relations as patterns: bridging the gap between OBO and OWL (2010) (66)
- Aptamer base: a collaborative knowledge base to describe aptamers and SELEX experiments (2012) (65)
- Computational approaches toward the design of pools for the in vitro selection of complex aptamers. (2010) (63)
- Bio2RDF Release 3: A larger, more connected network of Linked Data for the Life Sciences (2014) (62)
- Integrating systems biology models and biomedical ontologies (2011) (60)
- Decentralized provenance-aware publishing with nanopublications (2016) (59)
- Towards pharmacogenomics knowledge discovery with the semantic web (2009) (59)
- Evaluation of the OQuaRE framework for ontology quality (2013) (58)
- Identifying aberrant pathways through integrated analysis of knowledge in pharmacogenomics (2012) (56)
- The digital revolution in phenotyping (2015) (55)
- Mouse model phenotypes provide information about human drug targets (2013) (51)
- Distributed Analytics on Sensitive Medical Data: The Personal Health Train (2020) (50)
- yOWL: An ontology-driven knowledge base for yeast biologists (2008) (49)
- A common layer of interoperability for biomedical ontologies based on OWL EL (2011) (48)
- Evaluation of knowledge graph embedding approaches for drug-drug interaction prediction in realistic settings (2019) (48)
- A Novel Ensemble-Based Machine Learning Algorithm to Predict the Conversion From Mild Cognitive Impairment to Alzheimer's Disease Using Socio-Demographic Characteristics, Clinical Information, and Neuropsychological Measures (2019) (48)
- Interoperability between Biomedical Ontologies through Relation Expansion, Upper-Level Ontologies and Automatic Reasoning (2011) (48)
- Bridging Islands of Information to Establish an Integrated Knowledge Base of Drugs and Health Outcomes of Interest (2014) (47)
- The RNA Ontology (RNAO): An ontology for integrating RNA sequence and structure data (2009) (47)
- GridCell: a stochastic particle-based biological system simulator (2008) (45)
- In-silico Prediction of Synergistic Anti-Cancer Drug Combinations Using Multi-omics Data (2019) (44)
- Trusty URIs: Verifiable, Immutable, and Permanent Digital Artifacts for Linked Data (2014) (43)
- Towards quantitative measures in applied ontology (2012) (42)
- Fundamentals of Clinical Data Science (2018) (42)
- Integration and publication of heterogeneous text-mined relationships on the Semantic Web (2011) (42)
- Describing Chemical Functional Groups in OWL-DL for the Classification of Chemical Compounds (2007) (40)
- GrEDeL: A Knowledge Graph Embedding Based Method for Drug Discovery From Biomedical Literatures (2019) (40)
- Realism for scientific ontologies (2010) (39)
- HyQue: evaluating hypotheses using Semantic Web technologies (2011) (39)
- Columbia Open Health Data, clinical concept prevalence and co-occurrence from electronic health records (2018) (38)
- Ranking Adverse Drug Reactions With Crowdsourcing (2015) (36)
- The emergence and evolution of the research fronts in HIV/AIDS research (2016) (35)
- SMART: A Web-Based, Ontology-Driven, Semantic Web Query Answering Application (2007) (35)
- BioSearch: a semantic search engine for Bio2RDF (2017) (34)
- smartAPI: Towards a More Intelligent Network of Web APIs (2017) (34)
- Feasibility of Prioritizing Drug–Drug-Event Associations Found in Electronic Health Records (2015) (32)
- Making Digital Artifacts on the Web Verifiable and Reliable (2015) (32)
- Domain-based small molecule binding site annotation (2006) (31)
- Chemical Entity Semantic Specification: Knowledge representation for efficient semantic cheminformatics and facile data integration (2011) (31)
- Chemical Knowledge for the Semantic Web (2008) (31)
- Semantic Web integration of Cheminformatics resources with the SADI framework (2011) (31)
- Pharmacogenomic knowledge representation, reasoning and genome-based clinical decision support based on OWL 2 DL ontologies (2015) (30)
- Nanopublications: A Growing Resource of Provenance-Centric Scientific Linked Data (2018) (29)
- Drug-drug interaction discovery and demystification using Semantic Web technologies (2017) (29)
- Representing Chemicals Using OWL, Description Graphs and Rules (2010) (26)
- FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources. (2019) (25)
- Finding melanoma drugs through a probabilistic knowledge graph (2017) (25)
- Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop (2017) (25)
- State of the art and open challenges in community-driven knowledge curation (2013) (25)
- Blockchain for Privacy Preserving and Trustworthy Distributed Machine Learning in Multicentric Medical Imaging (C-DistriM) (2020) (24)
- Three-Layer OWL Ontology Design (2007) (24)
- Large-scale adverse effects related to treatment evidence standardization (LAERTES): an open scalable system for linking pharmacovigilance evidence sources with clinical data (2017) (24)
- A Web API Ecosystem through Feature-Based Reuse (2016) (23)
- Using the Personal Health Train for Automated and Privacy-Preserving Analytics on Vertically Partitioned Data (2018) (23)
- Disruption of fungal cell wall by antifungal Echinacea extracts. (2010) (22)
- A Privacy-Preserving Infrastructure for Analyzing Personal Health Data in a Vertically Partitioned Scenario (2019) (22)
- Self-organizing ontology of biochemically relevant small molecules (2012) (22)
- Prototype semantic infrastructure for automated small molecule classification and annotation in lipidomics (2011) (22)
- Semantically enabling pharmacogenomic data for the realization of personalized medicine. (2012) (22)
- The health care and life sciences community profile for dataset descriptions (2016) (22)
- The Translational Medicine Ontology: Driving personalized medicine by bridging the gap from bedside to bench (2010) (21)
- Ten simple rules for making training materials FAIR (2020) (21)
- FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation (2014) (21)
- Building an HIV data mashup using Bio2RDF (2012) (20)
- Publishing DisGeNET as Nanopublications (2014) (20)
- Is the crowd better as an assistant or a replacement in ontology engineering? An exploration through the lens of the Gene Ontology (2016) (19)
- Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science (2022) (19)
- Publishing without Publishers: a Decentralized Approach to Dissemination, Retrieval, and Archiving of Data (2014) (18)
- Genuine semantic publishing (2017) (18)
- Dataset Descriptions: HCLS Community Profile (2015) (17)
- Mining Electronic Health Records using Linked Data (2015) (17)
- Evaluation of knowledge graph embedding approaches for drug-drug interaction prediction using Linked Open Data (2018) (16)
- Considerations for the Conduction and Interpretation of FAIRness Evaluations (2020) (16)
- Building an effective Semantic Web for health care and the life sciences (2010) (15)
- Provenance-Centered Dataset of Drug-Drug Interactions (2015) (15)
- Predicting biomedical metadata in CEDAR: A study of Gene Expression Omnibus (GEO) (2017) (15)
- Link Analysis of Life Science Linked Data (2015) (15)
- An Ebola virus-centered knowledge base (2015) (14)
- Automatically exposing OpenLifeData via SADI semantic Web Services (2014) (14)
- Semantic micro-contributions with decentralized nanopublication services (2021) (14)
- An RDF/OWL Knowledge Base for Query Answering and Decision Support in Clinical Pharmacogenetics (2013) (14)
- Integrating findings of traditional medicine with modern pharmaceutical research: the potential role of linked open data (2010) (13)
- Modeling and querying graphical representations of statistical data (2010) (13)
- Semantics-Powered Healthcare Engineering and Data Analytics (2017) (13)
- SPARQL-enabled identifier conversion with Identifiers.org (2015) (12)
- Automating Identification of Multiple Chronic Conditions in Clinical Practice Guidelines (2015) (12)
- Cleaning by clustering: methodology for addressing data quality issues in biomedical metadata (2017) (12)
- The Semantic Web - ISWC 2015 (2015) (12)
- Knowledge Graph Completeness: A Systematic Literature Review (2021) (11)
- Using LASSO Regression to Predict Rheumatoid Arthritis Treatment Efficacy (2016) (11)
- Exposing Provenance Metadata Using Different RDF Models (2015) (11)
- Evaluating Scientific Hypotheses Using the SPARQL Inferencing Notation (2012) (10)
- An evidence-based approach to identify aging-related genes in Caenorhabditis elegans (2015) (10)
- Formalizing drug indications on the road to therapeutic intent (2017) (10)
- Modeling Life Science Knowledge with OWL 1.1 (2008) (10)
- Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data (2021) (10)
- Bioschemas: schema.org for the Life Sciences (2017) (10)
- Finding our way through phenotypes. PLoS Biology 13(1): e1002033. (2015) (10)
- LUCE: A Blockchain Solution for monitoring data License accoUntability and CompliancE (2019) (10)
- Predicting structured metadata from unstructured metadata (2016) (10)
- Research Challenges and Opportunities in Knowledge Representation (2013) (10)
- Towards a Semantic Knowledge Base for Yeast Biologists (2007) (10)
- Proceedings of the 8th International Workshop on OWL: Experiences and Directions (2011) (10)
- Semantic Query Answering with Time-Series Graphs (2007) (9)
- Advanced DEVS Models With Application to Biomedicine (2007) (9)
- Situational Modeling: Defining Molecular Roles in Biochemical Pathways and Reactions (2008) (9)
- Biotea: semantics for Pubmed Central (2018) (9)
- FAIRshake: toolkit to evaluate the findability, accessibility, interoperability, and reusability of research digital resources (2019) (9)
- Semantic Journal Mapping for Search Visualization in a Large Scale Article Digital Library (2009) (9)
- Special issue on Linked Data for Health Care and the Life Sciences (2014) (9)
- Privacy preserving distributed learning classifiers - Sequential learning with small sets of data (2021) (8)
- Concept Forgetting in ALCOI-Ontologies Using an Ackermann Approach (2015) (8)
- Mondo: Unifying diseases for the world, by the world (2022) (8)
- The SADI Personal Health Lens: A Web Browser-Based System for Identifying Personally Relevant Drug Interactions (2013) (8)
- A Preliminary Investigation into SPARQL Query Complexity and Federation in Bio2RDF (2015) (8)
- Evaluating FAIR-Compliance Through an Objective, Automated, Community-Governed Framework (2018) (8)
- The EU’s General Data Protection Regulation (GDPR) in a Research Context -- Fundamentals of Clinical Data Science (2019) (7)
- Discovering associations between adverse drug events using pattern structures and ontologies (2017) (7)
- A Minimal Information Model for Potential Drug-Drug Interactions (2021) (7)
- The SmartAPI Ecosystem for Making Web APIs FAIR (2017) (7)
- Towards FAIR protocols and workflows: the OpenPREDICT use case (2020) (7)
- Towards an Interoperable Information Infrastructure Providing Decision Support for Genomic Medicine (2011) (7)
- FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation (2016) (6)
- Is Crowdsourcing Patient-Reported Outcomes the Future of Evidence-Based Medicine? A Case Study of Back Pain (2017) (6)
- Introducing Defeasibility into OWL Ontologies (2015) (6)
- Role-based representation and inference of biochemical processes (2012) (6)
- A stochastic particle-based biological system simulator (2007) (6)
- Selected papers from the 16th Annual Bio-Ontologies Special Interest Group Meeting (2014) (6)
- Bio2RDF: Linked Data for the Life Sciences (2013) (6)
- Improved Dataset Coverage and Interoperability with Bio2RDF Release 2 (2012) (6)
- Clinical Decision Support Systems -- Fundamentals of Clinical Data Science (2019) (6)
- MetaCrowd: Crowdsourcing Biomedical Metadata Quality Assessment (2019) (6)
- Progress toward a universal biomedical data translator (2022) (5)
- A Comprehensive Comparison of Automated FAIRness Evaluation Tools (2022) (5)
- BioHackathon 2015: Semantics of data for life sciences and reproducible research (2020) (5)
- Ovopub: Modular data publication with minimal provenance (2013) (5)
- Context Aware Recommendation Engine for Metadata Submission (2015) (5)
- GFVO: the Genomic Feature and Variation Ontology (2015) (5)
- Predicting the need for a reduced drug dose, at first prescription (2018) (5)
- Possibilities for Integrating Model-related Data in Computational Biology (2013) (5)
- User-friendly Composition of FAIR Workflows in a Notebook Environment (2021) (5)
- Finding the Evidence Base Using Citation Networks: Do 300 to 400 US Physicians Die by Suicide Annually? (2020) (5)
- A Platform for Reasoning with OWL-EL Knowledge Bases in a Peer-to-Peer Environment (2009) (5)
- On Reasoning with RDF Statements about Statements using Singleton Property Triples (2015) (5)
- Linked Data in Drug Discovery (2012) (5)
- Mobile Apps -- Fundamentals of Clinical Data Science (2019) (5)
- Chemical Hazard Estimation and Method Comparison with OWL-Encoded Toxicity Decision Trees (2011) (4)
- Similarity and Relevance of Court Decisions: A Computational Study on CJEU Cases (2019) (4)
- Overlap in drug-disease associations between clinical practice guidelines and drug structured product label indications (2016) (4)
- Vec2SPARQL: integrating SPARQL queries and knowledge graph embeddings (2018) (4)
- Semantic Systems Biology: Formal Knowledge Representation in Systems Biology for Model Construction, Retrieval, Validation and Discovery (2013) (4)
- RKB: a Semantic Web knowledge base for RNA (2010) (4)
- Interoperability of text corpus annotations with the semantic web (2015) (4)
- Target Profiling of Small Molecules (2009) (4)
- Ontology Mapping for Life Science Linked Data (2016) (3)
- A systematic review on privacy-preserving distributed data mining (2021) (3)
- Data2Services: enabling automated conversion of data to services (2018) (3)
- Data Science - Methods, infrastructure, and applications (2017) (3)
- Selected papers from the 15th Annual Bio-Ontologies Special Interest Group Meeting (2013) (3)
- Predicting structured metadata from unstructured metadata (2016) (3)
- Network Ranking Assisted Semantic Data Mining (2016) (3)
- LSQ 2.0: A linked dataset of SPARQL query logs (2022) (3)
- MoSuMo: A Semantic Web service to generate electrostatic potentials across solvent excluded protein surfaces and binding pockets (2011) (3)
- The Case for a Linked Data Research Engine for Legal Scholars (2019) (3)
- LUCE: A Blockchain-based data sharing platform for monitoring data license accountability and compliance (2022) (3)
- Yeast Features: Identifying Significant Features Shared Among Yeast Proteins for Functional Genomics (2008) (3)
- Hash-URIs for Verifiable, Immutable, and Permanent Digital Artifacts (2014) (3)
- Modeling the Pharmacogenomics of Depression (2008) (3)
- BioSimulators: a central registry of simulation engines and services for recommending specific tools (2022) (3)
- Advancing Discovery Science with FAIR Data Stewardship: Findable, Accessible, Interoperable, Reusable (2018) (3)
- DataFairPort: The Perl libraries version 0.231 (2015) (2)
- Publishing OWL Ontologies with Presto (2008) (2)
- Representing Physician Suicide Claims as Nanopublications: Proof-of-Concept Study Creating Claim Networks (2022) (2)
- OWLDEF: Integrating OBO and OWL (2010) (2)
- The Gene Regulation Knowledge Commons: The action area of GREEKC. (2021) (2)
- Privacy-Preserving Federated Data Analysis: Data Sharing, Protection, and Bioethics in Healthcare (2022) (2)
- Adding Cognition to the Semanticscience Integrated Ontology (2019) (2)
- Quality Assessment of Biomedical Metadata Using Topic Modeling (2018) (2)
- ciTIzen-centric DAta pLatform (TIDAL): Sharing distributed personal data in a privacy-preserving manner for health research (2023) (2)
- Molecular Symmetry and Specialization of Atomic Connectivity by Class-based Reasoning of Chemical Structure (2012) (2)
- SADI for GMOD: Semantic Web Services for Model Organism Databases (2011) (2)
- 10 Simple rules for design, provision, and reuse of identifiers for web-based life science data (2015) (2)
- A platform for distributing and reasoning with OWL-EL knowledge bases in a peer-to-peer environment (2009) (2)
- Prediction Modeling Methodology -- Fundamentals of Clinical Data Science (2019) (2)
- Bio2RDF: Convert, Provide And Reuse. (2010) (2)
- 10 Simple rules for design, provision, and reuse of persistent identifiers for life science data (2015) (2)
- Abusive Language on Social Media Through the Legal Looking Glass (2021) (2)
- Modeling tryptic digestion on the Cell BE processor (2009) (2)
- Putting the GDPR into Practice: Difficulties and Uncertainties Experienced in the Conduct of Big Data Health Research (2021) (2)
- Building an HIV data mashup using (2011) (2)
- BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains (2014) (2)
- Relation extraction from DailyMed structured product labels by optimally combining crowd, experts and machines (2021) (2)
- Drug-Drug Interaction Data Source Survey and Linking (2014) (2)
- Self-organizing ontology of biochemically relevant small molecules (2012) (1)
- Discovering ADE associations from EHRs using pattern structures and ontologies (2016) (1)
- FAIR Principles for Clinical Practice Guidelines in a Learning Health System (2019) (1)
- Semantic Annotation and Question Answering of Statistical Graphs (2008) (1)
- What do we mean with sound semantics, exactly? A survey of taxonomies and ontologies of everyday sounds (2022) (1)
- Report on semantic web for health care and life sciences workshop (2008) (1)
- Predicting the need for a reduced drug dose, at first prescription (2018) (1)
- Thematic issue of the Second combined Bio-ontologies and Phenotypes Workshop (2016) (1)
- Knowledge Graphs Evolution and Preservation - A Technical Report from ISWS 2019 (2020) (1)
- Putting FAIR Evidence into Practice (2019) (1)
- Experience: Automated Prediction of Experimental Metadata from Scientific Publications (2021) (1)
- Making Linked Data SPARQL with the InterMine Biological Data Warehouse (2016) (1)
- Analyzing Partitioned FAIR Health Data Responsibly (2018) (1)
- A qualitative-computational cataloguing of the EU-level public research and innovation portfolio of clean energy technologies (2014–2020) (2021) (1)
- Review of Semantic Integration in the Life Sciences (2010) (1)
- The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery (2014) (1)
- Special issue on bio-ontologies and phenotypes (2015) (1)
- A Nanopublication Framework for Biological Networks using Cytoscape.js (2014) (1)
- Annotation of Existing Databases using Semantic Web Technologies: Making Data more FAIR (2019) (1)
- Selected papers from the 14th Annual Bio-Ontologies Special Interest Group Meeting (2012) (1)
- Automated Identification of Food Substitutions Using Knowledge Graph Embeddings (2022) (1)
- General Terminology Induction in OWL (2015) (1)
- Privacy-Preserving Generalized Linear Models using Distributed Block Coordinate Descent (2019) (1)
- Representing Physician Suicide Claims as Nanopublications (2020) (1)
- Special issue on bio-ontologies and phenotypes (2015) (1)
- Assessing Schema.org's Coverage of Terms from Key Biomedical Datasets (2018) (1)
- Proceedings, Part II, of the 14th International Semantic Web Conference on The Semantic Web - ISWC 2015 - Volume 9367 (2015) (1)
- Selected papers from the 16th Annual Bio-Ontologies Special Interest Group Meeting (2014) (1)
- Prediction of illness remission in patients with Obsessive-Compulsive Disorder with supervised machine learning. (2021) (1)
- A Linked Data Representation for Summary Statistics and Grouping Criteria (2019) (1)
- MetaCrowd: crowdsourcing gene expression metadata quality assessment (2017) (1)
- Ontology-Based Querying with Bio2RDF’s Linked Open Data (2013) (1)
- Relational Patterns in OWL and Their Application to OBO (2010) (1)
- CrowdED: Guideline for Optimal Crowdsourcing Experimental Design (2018) (1)
- Introduction - FAIR data, systems and analysis (2020) (1)
- Answering with Time-Series Graphs (2007) (1)
- Towards FAIR protocols and workflows: The OpenPREDICT case study (2019) (1)
- Identifiers for the 21 st century : How to design , provision , and reuse identifiers to maximize data utility and impact (2016) (1)
- Databases and ontologies SPARQL-enabled identifier conversion with Identifiers . org (2015) (0)
- Conjunctive Query Answering in Distributed Ontology Systems for Ontologies with Large OWL ABoxes (2009) (0)
- Evaluation of knowledge graph embedding approaches for drug-drug interaction prediction in realistic settings (2019) (0)
- Data validation and schema interoperability (2020) (0)
- The Web as a Distributed Biochemical Reactor: Semantically Enabled Metabolic Fate Prediction (2013) (0)
- SIENA: Semi-automatic semantic enhancement of datasets using concept recognition (2021) (0)
- Author Correction: Evaluating FAIR maturity through a scalable, automated, community-governed framework (2019) (0)
- Erratum: Trusty URIs: Verifiable, Immutable, and Permanent Digital Artifacts for Linked Data (2014) (0)
- CEUR Workshop Proceedings (2014) (0)
- Author Correction: Evaluating FAIR maturity through a scalable, automated, community-governed framework (2019) (0)
- Semantic Correlation Graph Embedding (2022) (0)
- Performance of the Charniak-Lease parser on biological text using different training corpora (2008) (0)
- InContext: curation of medical context for drug indications (2021) (0)
- Comparing Drug-Disease Associations in Clinical Practice Guideline Recommendations and Drug Product Label Indications (2015) (0)
- Review of What is an ontology (2010) (0)
- SIENA: Semi-automatic semantic enhancement of datasets using concept recognition (2021) (0)
- Selected papers from the 15th Annual Bio-Ontologies Special Interest Group Meeting (2013) (0)
- Accelerating Discovery Science with an Internet of FAIR Data and Services (2020) (0)
- Nanotate: Semantically Annotating Experimental Protocols with Nanopublications (2022) (0)
- Generation of Web pages for Public Scientific Databases Using Schema . org (2018) (0)
- YummyData: Measuring the "Sparkliness" of Biomedical Sparql Endpoints (2012) (0)
- 2 Preclinical Trials (2018) (0)
- 1st Semantic Web Technologies for Libraries and Readers (STLR 2011) (2013) (0)
- Semantic annotation of PubChem databases (2013) (0)
- Cleaning by clustering: methodology for addressing data quality issues in biomedical metadata (2017) (0)
- Using animal model phenotypes to predict human drug targets (2014) (0)
- Semantically-Informed Deep Neural Networks For Sound Recognition (2023) (0)
- Thematic issue of the Second combined Bio-ontologies and Phenotypes Workshop (2016) (0)
- Sleeping Beauties in Case Law (2020) (0)
- The current state of FAIR principles literature: a bibliometric review. (2019) (0)
- TAPS Responsibility Matrix: A tool for responsible data science by design (2023) (0)
- Addendum: The FAIR Guiding Principles for scientific data management and stewardship (2019) (0)
- The YummyData Initiative: How SPARQL-y is your biomedical endpoint? (2012) (0)
- Bio2RDF release 2: improved coverage, interoperability and provenance of linked data for the life sciences (2013) (0)
- PDB2RDF - Exposing Molecular and Experimental Knowledge on the Semantic Web (2009) (0)
- In-silico Prediction of Synergistic Anti-Cancer Drug Combinations Using Multi-omics Data (2019) (0)
- A formalization of one of the main claims of "The FAIR Guiding Principles for scientific data management and stewardship" by Wilkinson et al. 20161 (2022) (0)
- Transformation and Integration of Heterogeneous Health Data in a Privacy-preserving Distributed Learning Infrastructure (2019) (0)
- Knowledge Engineering and Knowledge Management: 22nd International Conference, EKAW 2020, Bolzano, Italy, September 16–20, 2020, Proceedings (2020) (0)
- Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data (2022) (0)
- EOSC-Life FAIR Requirements Document (2020) (0)
- Columbia Open Health Data, a database of EHR prevalence and co-occurrence of conditions, drugs, and procedures (2018) (0)
- Consent Based Access Policy Framework (2019) (0)
- Research Data Stewardship for Healthcare Professionals -- Fundamentals of Clinical Data Science (2019) (0)
- M4M Workshops: Making it easy for humans to make metadata for machines (2018) (0)
- Improving Correlation Capture in Generating Imbalanced Data using Differentially Private Conditional GANs (2022) (0)
- Review for What is an upper level ontology (2010) (0)
- A Large-scale Gene-centric Semantic Web Knowledge Base for Molecular Biology (2013) (0)
- FAIR Begins at home: Implementing FAIR via the Community Data Driven Insights (2023) (0)
- Looking into Reactome through Biopax Lens (2013) (0)
- Perspective Finding Our Way through Phenotypes (2014) (0)
- Drug-Disease Associations in Guidelines, Drug Labels, and Practice (2015) (0)
- InContext: curation of medical context for drug indications (2021) (0)
- Assessing the quality of manually curated drug indication and usage information via ontology term mappings (2017) (0)
- Erratum: Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis (2016) (0)
- Proceedings of the 14th International Conference on The Semantic Web - ISWC 2015 - Volume 9366 (2015) (0)
- An evidence-based approach to identify aging-related genes in Caenorhabditis elegans (2015) (0)
- Making training materials FAIR in 10 steps (2020) (0)
- Studying the association of diabetes and healthcare cost on distributed data from the Maastricht Study and Statistics Netherlands using a privacy-preserving federated learning infrastructure (2022) (0)
- Discovering associations between adverse drug events using pattern structures and ontologies (2017) (0)
- Selected papers from the 14th Annual Bio-Ontologies Special Interest Group Meeting (2012) (0)
- The structure and dynamics of the research fronts in HIV/AIDS research: part-whole and adaptive specialization (2016) (0)
- FAIR: Establishing of a social and technological infrastructure for data discovery and reuse (2018) (0)
- Taking flight with OWL2 (2011) (0)
- Reuse of Design Pattern Measurements for Health Data (2021) (0)
- Towards an extensible FAIRness assessment of FAIR Digital Objects (2022) (0)
- BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services (2019) (0)
- Finding Our Way Through Phenotypes (2019) (0)
- Machine Learning Based Drug Indication Prediction Using Linked Open Data (2017) (0)
- FAIR implementation choices and challenges (2019) (0)
- Authorization Framework for Medical Data (2019) (0)
- Automatically exposing OpenLifeData via SADI semantic Web Services (2014) (0)
- HyQue: A Semantic Web tool for evaluating scientific hypotheses (2013) (0)
- Integration of knowledge for personalized medicine: a pharmacogenomics case-study (2012) (0)
- Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen (2019) (0)
- Development of Small-Molecule Ligands and Inhibitors (2009) (0)
- Inaugural M4M Workshop (October 15-16 2018) (2018) (0)
- A model for capturing provenance of assertions about chemical substances (2018) (0)
- Semantic Research Platform for Model Organisms (2016) (0)
- Evaluation of research in biomedical (2012) (0)
- Finding Melanoma Drugs Through a 1 Probabilistic Knowledge Graph 2 (2017) (0)
- Overlap in drug-disease associations between clinical practice guidelines and drug structured product label indications (2016) (0)
- LISC 2014 - Results: Discussion on Challenges in Making Sense Out Of Data Using Linked Data Technologies (2014) (0)
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