Mick Watson

Q: What Schools Are Affiliated With Mick Watson

Mick Watson is affiliated with the following schools: Imperial College London, University of Oxford, University of Edinburgh

Mick Watson's AcademicInfluence.com Rankings

Mick Watson

Biology

#15007

World Rank

#18899

Historical Rank

Bioinformatics

#198

World Rank

#200

Historical Rank

Computational Biology

#363

World Rank

#365

Historical Rank

Genetics

#1728

World Rank

#1839

Historical Rank

biology Degrees

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Biology

Mick Watson's Degrees

Bachelors Genetics University of Oxford

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Mick Watson's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

The Madness of Microbiome: Attempting To Find Consensus “Best Practice” for 16S Microbiome Studies (2018) (335)
Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen (2018) (325)
Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery (2019) (255)
The rumen microbial metagenome associated with high methane production in cattle (2015) (248)
Bovine Host Genetic Variation Influences Rumen Microbial Methane Production with Best Selection Criterion for Low Methane Emitting and Efficiently Feed Converting Hosts Based on Metagenomic Gene Abundance (2016) (247)
Knockdown of piRNA pathway proteins results in enhanced Semliki Forest virus production in mosquito cells (2013) (195)
Addressing Global Ruminant Agricultural Challenges Through Understanding the Rumen Microbiome: Past, Present, and Future (2018) (192)
Exome Sequencing: Current and Future Perspectives (2015) (169)
CoXpress: differential co-expression in gene expression data (2006) (157)
An improved pig reference genome sequence to enable pig genetics and genomics research (2019) (152)
Errors in long-read assemblies can critically affect protein prediction (2019) (148)
The automatic annotation of bacterial genomes (2012) (139)
MicroRNA Profile of Marek's Disease Virus-Transformed T-Cell Line MSB-1: Predominance of Virus-Encoded MicroRNAs (2008) (136)
Errors in RNA-Seq quantification affect genes of relevance to human disease (2015) (132)
A Review of Bioinformatics Tools for Bio-Prospecting from Metagenomic Sequence Data (2017) (131)
Successful test launch for nanopore sequencing (2015) (120)
Induction and suppression of tick cell antiviral RNAi responses by tick-borne flaviviruses (2014) (114)
MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach (2017) (111)
The rumen microbiome as a reservoir of antimicrobial resistance and pathogenicity genes is directly affected by diet in beef cattle (2017) (101)
poRe: an R package for the visualization and analysis of nanopore sequencing data (2014) (96)
RNA Interference Targets Arbovirus Replication in Culicoides Cells (2012) (87)
Livestock 2.0 – genome editing for fitter, healthier, and more productive farmed animals (2018) (87)
Aedes aegypti Piwi4 Is a Noncanonical PIWI Protein Involved in Antiviral Responses (2017) (86)
CORNA: testing gene lists for regulation by microRNAs (2009) (73)
Assembly of hundreds of novel bacterial genomes from the chicken caecum (2019) (71)
Differential expression of microRNAs in Marek's disease virus-transformed T-lymphoma cell lines. (2009) (66)
When will ‘open science’ become simply ‘science’? (2015) (65)
A single chromosome assembly of Bacteroides fragilis strain BE1 from Illumina and MinION nanopore sequencing data (2015) (60)
Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation (2018) (57)
Ixodes scapularis and Ixodes ricinus tick cell lines respond to infection with tick-borne encephalitis virus: transcriptomic and proteomic analysis (2015) (57)
RNA Interference Restricts Rift Valley Fever Virus in Multiple Insect Systems (2017) (56)
Identification, Comparison, and Validation of Robust Rumen Microbial Biomarkers for Methane Emissions Using Diverse Bos Taurus Breeds and Basal Diets (2018) (56)
Complete Genome Sequences of Elephant Endotheliotropic Herpesviruses 1A and 1B Determined Directly from Fatal Cases (2013) (56)
Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture (2021) (48)
The Antiviral RNAi Response in Vector and Non-vector Cells against Orthobunyaviruses (2017) (46)
Gene flow in environmental Legionella pneumophila leads to genetic and pathogenic heterogeneity within a Legionnaires’ disease outbreak (2014) (43)
Illuminating the future of DNA sequencing (2014) (43)
Characterisation of the British honey bee metagenome (2018) (43)
From FAANG to fork: application of highly annotated genomes to improve farmed animal production (2020) (42)
viRome: an R package for the visualization and analysis of viral small RNA sequence datasets (2013) (39)
An Avian Retrovirus Uses Canonical Expression and Processing Mechanisms To Generate Viral MicroRNA (2013) (39)
GO‐FAANG meeting: a Gathering On Functional Annotation of Animal Genomes (2016) (38)
Faculty Opinions recommendation of Whale watching with BulkVis: A graphical viewer for Oxford Nanopore bulk fast5 files. (2018) (38)
Ability of the Encephalitic Arbovirus Semliki Forest Virus To Cross the Blood-Brain Barrier Is Determined by the Charge of the E2 Glycoprotein (2015) (38)
Diversity and Community Composition of Methanogenic Archaea in the Rumen of Scottish Upland Sheep Assessed by Different Methods (2014) (37)
DetectiV: visualization, normalization and significance testing for pathogen-detection microarray data (2007) (36)
Identification of Low-Confidence Regions in the Pig Reference Genome (Sscrofa10.2) (2015) (33)
The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers (2014) (33)
Identification of Complex Rumen Microbiome Interaction Within Diverse Functional Niches as Mechanisms Affecting the Variation of Methane Emissions in Bovine (2020) (33)
MAGpy: a reproducible pipeline for the downstream analysis of metagenome-assembled genomes (MAGs) (2017) (32)
Methods for interpreting lists of affected genes obtained in a DNA microarray experiment (2009) (31)
Development of the duodenal, ileal, jejunal and caecal microbiota in chickens (2019) (31)
Novel MicroRNAs (miRNAs) Encoded by Herpesvirus of Turkeys: Evidence of miRNA Evolution by Duplication (2009) (29)
Identification of Rumen Microbial Genes Involved in Pathways Linked to Appetite, Growth, and Feed Conversion Efficiency in Cattle (2019) (29)
So you want to be a computational biologist? (2013) (28)
1200 high-quality metagenome-assembled genomes from the rumen of African cattle and their relevance in the context of sub-optimal feeding (2020) (26)
Open prediction of polysaccharide utilisation loci (PUL) in 5414 public Bacteroidetes genomes using PULpy (2018) (26)
Design and development of exome capture sequencing for the domestic pig (Sus scrofa) (2014) (26)
Definition of the Cattle Killer Cell Ig–like Receptor Gene Family: Comparison with Aurochs and Human Counterparts (2014) (24)
Chromosome Level Genome Assembly and Comparative Genomics between Three Falcon Species Reveals an Unusual Pattern of Genome Organisation (2018) (23)
Metagenomic analysis of the cow, sheep, reindeer and red deer rumen (2020) (21)
Marek's Disease Virus-Encoded MicroRNA 155 Ortholog Critical for the Induction of Lymphomas Is Not Essential for the Proliferation of Transformed Cell Lines (2019) (21)
Temporal stability of the rumen microbiota in beef cattle, and response to diet and supplements (2019) (20)
Tandem Amplification of the Staphylococcal Cassette Chromosome mec Element Can Drive High-Level Methicillin Resistance in Methicillin-Resistant Staphylococcus aureus (2017) (18)
Novel microRNAs encoded by duck enteritis virus. (2012) (18)
Role of Cecal Microbiota in the Differential Resistance of Inbred Chicken Lines to Colonization by Campylobacter jejuni (2020) (17)
Analysis of the real EADGENE data set: Comparison of methods and guidelines for data normalisation and selection of differentially expressed genes (Open Access publication) (2007) (17)
Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome (2015) (17)
Rapid identification of bovine MHCI haplotypes in genetically divergent cattle populations using next-generation sequencing (2016) (16)
MinIONTM nanopore sequencing of environmental metagenomes (2017) (16)
Differential protein profiling as a potential multi-marker approach for TSE diagnosis (2009) (14)
Identification of Microbial Genetic Capacities and Potential Mechanisms Within the Rumen Microbiome Explaining Differences in Beef Cattle Feed Efficiency (2020) (14)
MicroRNA expression profiles in avian haemopoietic cells (2013) (14)
Whole-Genome Sequence Data Suggest Environmental Adaptation of Ethiopian Sheep Populations (2021) (13)
Mind the gaps – ignoring errors in long read assemblies critically affects protein prediction (2018) (13)
Transcriptional Response of Ovine Lung to Infection with Jaagsiekte Sheep Retrovirus (2019) (13)
ProGenExpress: Visualization of quantitative data on prokaryotic genomes (2005) (11)
Low coverage sequencing of two Asian elephant (Elephas maximus) genomes (2014) (11)
Meta4: a web application for sharing and annotating metagenomic gene predictions using web services (2013) (10)
The genomic and proteomic landscape of the rumen microbiome revealed by comprehensive genome-resolved metagenomics (2018) (10)
Global Gene Expression Profiling of Myeloid Immune Cell Subsets in Response to In Vitro Challenge with Porcine Circovirus 2b (2014) (10)
Unravelling the Role of Rumen Microbial Communities, Genes, and Activities on Milk Fatty Acid Profile Using a Combination of Omics Approaches (2021) (10)
Differentially expressed genes during spontaneous lytic switch of Marek's disease virus in lymphoblastoid cell lines determined by global gene expression profiling (2017) (10)
Comparison of three microarray probe annotation pipelines: differences in strategies and their effect on downstream analysis (2009) (10)
Bovine host genome acts on rumen microbiome function linked to methane emissions (2022) (10)
An ADAMTS3 missense variant is associated with Norwich Terrier upper airway syndrome (2019) (9)
From FAANG to fork: application of highly annotated genomes to improve farmed animal production (2020) (9)
Effect of cecal microbiota transplantation between different broiler breeds on the chick flora in the first week of life (2021) (9)
Analysis of a simulated microarray dataset: Comparison of methods for data normalisation and detection of differential expression (Open Access publication) (2007) (9)
Quality assessment and control of high-throughput sequencing data (2014) (9)
Activation of gga-miR-155 by reticuloendotheliosis virus T strain and its contribution to transformation (2017) (9)
Analysis of the real EADGENE data set: Multivariate approaches and post analysis (Open Access publication) (2007) (7)
IMAD: flexible annotation of microarray sequences (2009) (7)
poRe GUIs for parallel and real-time processing of MinION sequence data (2016) (6)
Use of GenMAPP and MAPPFinder to analyse pathways involved in chickens infected with the protozoan parasite Eimeria (2009) (6)
MicroRNA profile of Marek ’ s disease virus-transformed T-cell line MSB-1 : 1 Predominance of virus-encoded microRNAs 2 3 4 (2008) (6)
Fat accretion measurements strengthen the relationship between feed conversion efficiency and Nitrogen isotopic discrimination while rumen microbial genes contribute little (2018) (5)
Single-cell RNA-seq reveals CD16- monocytes as key regulators of human monocyte transcriptional response to Toxoplasma (2019) (5)
Bovine host genome acts on specific metabolism, communication and genetic processes of rumen microbes host-genomically linked to methane emissions (2021) (5)
New insights from 33,813 publicly available metagenome-assembled-genomes (MAGs) assembled from the rumen microbiome (2021) (5)
The EADGENE Microarray Data Analysis Workshop (Open Access publication) (2007) (5)
The incredible complexity of RNA splicing (2016) (5)
The EADGENE microarray data analysis workshop (2007) (4)
Edinburgh Research Explorer Marek's disease virus-encoded miR-155 ortholog critical for the induction of lymphomas is not essential for the proliferation of transformed cell lines (2019) (4)
Author Correction: Assembly of hundreds of novel bacterial genomes from the chicken caecum (2021) (4)
Approaches taken, progress made, and enhanced utility of long read-based goat, swine, cattle and sheep reference genomes (2016) (4)
Visualization and analysis of RNA-Seq assembly graphs (2019) (3)
Rapid identification of bovine MHCI haplotypes in genetically divergent cattle populations using next-generation sequencing (2016) (3)
Assembly of hundreds of microbial genomes from the cow rumen reveals novel microbial species encoding enzymes with roles in carbohydrate metabolism (2017) (3)
Correction to: The rumen microbiome as a reservoir of antimicrobial resistance and pathogenicity genes is directly affected by diet in beef cattle (2019) (3)
Gene flow in environmental Legionella pneumophila leads to genetic and pathogenic heterogeneity within a Legionnaires’ disease outbreak (2014) (2)
A Genomic Census of the Chicken Gut Microbiome using Metagenomics and Culture (2020) (2)
SUPERSEDED - Assembly of hundreds of microbial genomes from the cow rumen reveals novel microbial species encoding enzymes with roles in carbohydrate metabolism (2017) (2)
A Genomic Blueprint of the Chicken Gut Microbiome (2020) (2)
Investigating the impact of database choice on the accuracy of metagenomic read classification for the rumen microbiome (2022) (1)
Microbiome-driven breeding strategy potentially improves beef fatty acid profile benefiting human health and reduces methane emissions (2022) (1)
Explorer Complete genome sequences of elephant endotheliotropic herpesviruses 1 A and 1 B determined directly from fatal cases (2017) (1)
1200 high-quality metagenome-assembled genomes from the rumen of African cattle and their relevance in the context of sub-optimal feeding (2020) (1)
Correction: Microbiome-driven breeding strategy potentially improves beef fatty acid profile benefiting human health and reduces methane emissions (2022) (1)
Ixodes scapularis and Ixodes ricinus tick cell lines respond to infection with tick-borne encephalitis virus: transcriptomic and proteomic analysis (2015) (1)
ARK-Genomics Centre for Comparative and Functional Genomics (2012) (1)
Global gene expression profiling of myeloid immune cell subsets in response to in vitro challenge with porcine circovirus 2 b (2014) (1)
Catching shufflons in the act: Using nanopore reads to study Bacteroides fragilis (2015) (1)
Design and development of exome capture sequencing for the domestic pig (Sus scrofa) (2014) (1)
SUPERSEDED - Hi-C genomes from "Assembly of hundreds of microbial genomes from the cow rumen reveals novel microbial species encoding enzymes with roles in carbohydrate metabolism" (2017) (1)
The sheep gene expression atlas project (2016) (1)
Livestock 2.0 – genome editing for fitter, healthier, and more productive farmed animals (2018) (0)
The rumen microbiome as a reservoir of antimicrobial resistance and pathogenicity genes is directly affected by diet in beef cattle (2017) (0)
The Microbial Proteome Associated with High Methane Emissions in Cattle Determined By Shotgun Metagenomic Sequencing (2015) (0)
High throughput analysis of MHC class I and class II diversity of Zambian indigenous cattle populations (2023) (0)
A meta-analysis of public microarray datasets reveals the transcriptional immune response to multiple pathogens in the chicken (2011) (0)
Tandem amplification of SCCmec can drive high level methicillin resistance in MRSA (2017) (0)
Assemblies of the gyr falcon (2018) (0)
Discovery and Annotation of Novel Proteins from Rumen Gut Metagenomic Sequencing Data (2016) (0)
Assessing the Ability of RNA-Seq to Quantify Non-Coding RNA Accurately (2016) (0)
The use of differential protein expression profiling as a diagnostic for TSE research (2008) (0)
Beware the immeasurable: the genes RNA-Seq cannot accurately quantify and their role in human disease (2015) (0)
The incredible complexity of RNA splicing (2016) (0)
A multi-marker test for TSE disease (2008) (0)
Functional Annotation of the Sheep (Ovis aries) Genome (2017) (0)
Chicken cecal metagenome assembled genomes (2019) (0)
The potential of using rumen microbial gene abundances to improve feed efficiency in beef cattle (2018) (0)
Scotland ' s Rural College Addressing global ruminant agricultural challenges through understanding the rumen microbiome : past , present and future (2018) (0)
Identifying the role of rumen microbiome on bovine milk fatty acid profile using -omics approaches (2019) (0)
Development of the duodenal, ileal, jejunal and caecal microbiota in chickens (2019) (0)
Scotland's Rural College Addressing global ruminant agricultural challenges through understanding the rumen microbiome: past, present and future Huws, (2018) (0)
SELDI-assisted identification of biomarkers for TSE diagnosis (2006) (0)
Differential protein expression profiling using SELDI technology as a potential diagnostic for TSE disease (2009) (0)
Visualisation and analysis of RNA-Seq assembly graphs (2018) (0)
Edinburgh Research Explorer Quality assessment and control of high-throughput sequencing data (2014) (0)
633. Host-genomically influenced ruminal microbial genes are temporally stable during the finishing phase in beef cattle (2022) (0)
Author Correction: Assembly of hundreds of novel bacterial genomes from the chicken caecum (2021) (0)
Illuminating the future of DNA sequencing (2014) (0)
Explorer MicroRNA expression profiles in avian haemopoietic cells (2017) (0)
The rumen microbial metagenome associated with high methane production in cattle (2015) (0)
An overview of differential protein expression profiling as an alternative approach to diagnosis of TSE disease (2008) (0)
1 Complete genome sequences of elephant endotheliotropic herpesviruses 1 A and 1 B 1 determined directly from fatal cases 2 (2013) (0)
Identifying low-confidence regions in the Sscrofa10.2 reference genome (2016) (0)
Quality assessment of the current pig genome for variant discovery; and high quality re-assembly using 3rd generation sequencing (2016) (0)
Is this the end of RNA-Seq alignment (2015) (0)
17. Host genomics affects the abundances of several uncultured Methanobrevibacter species genomically associated with methane emissions in beef cattle (2021) (0)
Explorer Exome Sequencing : Current and Future Perspectives (2017) (0)
Explorer Aedes aegypti Piwi 4 Is a Noncanonical PIWI Protein Involved in Antiviral Responses (2017) (0)
KOunt – A reproducible KEGG orthologue abundance workflow (2023) (0)
Bioinformatics training for genomics – one year on (2015) (0)
69. Part of the functional rumen core microbiome is influenced by the bovine host genome and associated with feed efficiency (2022) (0)
Assembly of hundreds of novel bacterial genomes from the chicken caecum (2020) (0)
A data-driven diagnostic assay for the detection of TSE research (2009) (0)
Jaagsiekte sheep retrovirus infection induces changes in microRNA expression in the ovine lung (2021) (0)
The use of differential protein expression profiling in TSE disease (2008) (0)
129 Altered rumen microbiota profiles in cattle infected with and vaccinated against the parasitic nematode Ostertagia ostertagi (2021) (0)
Comparison of Methods for Functional and Phylogenetic Charactersiation of Rumen Metagenomic Data (2017) (0)
Transmissible spongiform encephalopathy - the search for potential biomarkers using SELDI-MS-TOF technology (2006) (0)
Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome (2015) (0)
Errors in RNA-Seq quantification affect genes of relevance to human disease (2015) (0)
Aspects of the feeding ecology of Himalayan tahr (Hemitragus jemlacicus), some comparisons with chamois (Rupicapra rupicapra rupicapra) and implications for tahr management in New Zealand (2007) (0)
Simulation of visual processing in retinal ganglion cells (2005) (0)
Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation (2019) (0)
Bioinformatic analysis of genome-scale data reveals insights into host-pathogen interactions in farm animals (2015) (0)
Temporal stability of the rumen microbiota in beef cattle, and response to diet and supplements (2019) (0)
Metagenomic analysis of the cow, sheep, reindeer and red deer rumen (2021) (0)
Correction to: The rumen microbiome as a reservoir of antimicrobial resistance and pathogenicity genes is directly affected by diet in beef cattle (2019) (0)
Errors in long-read assemblies can critically affect protein prediction (2019) (0)
Characterisation of the British honey bee metagenome (2018) (0)
Fat accretion measurements strengthen the relationship between feed conversion efficiency and Nitrogen isotopic discrimination while rumen microbial genes contribute little (2018) (0)
When will ‘open science’ become simply ‘science’? (2015) (0)
Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen (2018) (0)

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What Schools Are Affiliated With Mick Watson?

Mick Watson is affiliated with the following schools:

Mick Watson's Academic­Influence.com Rankings

Mick Watson's Degrees

Why Is Mick Watson Influential?

Mick Watson's Published Works

Published Works

What Schools Are Affiliated With Mick Watson?

Mick Watson's AcademicInfluence.com Rankings