Mingyao Li | Academic Influence

Mingyao Li's AcademicInfluence.com Rankings

Mingyao Li

Mathematics

#5819

World Rank

#8158

Historical Rank

Statistics

#487

World Rank

#562

Historical Rank

mathematics Degrees

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Mathematics

Mingyao Li's Degrees

PhD Biostatistics University of Washington
Masters Biostatistics University of Washington
Bachelors Mathematics Peking University

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Why Is Mingyao Li Influential?

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According to Wikipedia, Mingyao Li is a Chinese-American biostatistician and statistical geneticist known for her research on genetic factors related to heart disease, and as one of the creators of the ANNOVAR bioinformatics software tool. She is a professor of biostatistics in the Perelman School of Medicine at the University of Pennsylvania.

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Mingyao Li's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data (2010) (9955)
Biological, Clinical, and Population Relevance of 95 Loci for Blood Lipids (2010) (3485)
Plasma HDL cholesterol and risk of myocardial infarction: a mendelian randomisation study (2012) (2002)
PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data. (2007) (1699)
Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants (2009) (1100)
A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants (2015) (1024)
Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease (2011) (894)
Pathway-based approaches for analysis of genomewide association studies. (2007) (886)
Analysing biological pathways in genome-wide association studies (2010) (783)
Single-cell transcriptomics of the mouse kidney reveals potential cellular targets of kidney disease (2018) (643)
Meta-analysis and imputation refines the association of 15q25 with smoking quantity (2010) (605)
A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium (2009) (551)
Identification of ADAMTS7 as a novel locus for coronary atherosclerosis and association of ABO with myocardial infarction in the presence of coronary atherosclerosis: two genome-wide association studies (2011) (490)
Widespread RNA and DNA Sequence Differences in the Human Transcriptome (2011) (446)
SAVER: Gene expression recovery for single-cell RNA sequencing (2018) (442)
Exome sequencing identifies rare LDLR and APOA5 alleles conferring risk for myocardial infarction (2014) (426)
Concept, Design and Implementation of a Cardiovascular Gene-Centric 50 K SNP Array for Large-Scale Genomic Association Studies (2008) (416)
Bulk tissue cell type deconvolution with multi-subject single-cell expression reference (2018) (404)
Genome-Wide Analyses of Exonic Copy Number Variants in a Family-Based Study Point to Novel Autism Susceptibility Genes (2009) (400)
Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function (2016) (388)
A genome-wide association meta-analysis identifies new childhood obesity loci (2012) (375)
Strong association of the Y402H variant in complement factor H at 1q32 with susceptibility to age-related macular degeneration. (2005) (365)
CFH haplotypes without the Y402H coding variant show strong association with susceptibility to age-related macular degeneration (2006) (360)
Common variation in KITLG and at 5q31.3 predisposes to testicular germ cell cancer (2009) (336)
Adjustment of genomic waves in signal intensities from whole-genome SNP genotyping platforms (2008) (327)
Genome-Wide Association Study of Coronary Heart Disease and Its Risk Factors in 8,090 African Americans: The NHLBI CARe Project (2011) (325)
Association of low-frequency and rare coding-sequence variants with blood lipids and coronary heart disease in 56,000 whites and blacks. (2014) (292)
Large-scale gene-centric meta-analysis across 39 studies identifies type 2 diabetes loci. (2012) (282)
Diverse genome-wide association studies associate the IL12/IL23 pathway with Crohn Disease. (2009) (268)
Large-scale gene-centric meta-analysis across 32 studies identifies multiple lipid loci. (2012) (238)
Large-Scale Gene-Centric Analysis Identifies Novel Variants for Coronary Artery Disease (2011) (228)
The Role of Obesity‐associated Loci Identified in Genome‐wide Association Studies in the Determination of Pediatric BMI (2009) (209)
Association Analysis of the FTO Gene with Obesity in Children of Caucasian and African Ancestry Reveals a Common Tagging SNP (2008) (204)
Design of the Coronary ARtery DIsease Genome-Wide Replication And Meta-Analysis (CARDIoGRAM) Study: A Genome-Wide Association Meta-analysis Involving More Than 22 000 Cases and 60 000 Controls (2010) (203)
Loss-of-function variants in endothelial lipase are a cause of elevated HDL cholesterol in humans. (2009) (186)
Joint Regression Analysis of Correlated Data Using Gaussian Copulas (2009) (186)
Toll-like receptor 4 variant D299G is associated with susceptibility to age-related macular degeneration. (2005) (185)
RNA-Seq identifies novel myocardial gene expression signatures of heart failure. (2015) (175)
Single-Cell Genomics Reveals a Novel Cell State During Smooth Muscle Cell Phenotypic Switching and Potential Therapeutic Targets for Atherosclerosis in Mouse and Human (2020) (155)
Fractalkine Is a Novel Human Adipochemokine Associated With Type 2 Diabetes (2011) (149)
Multiple rare alleles at LDLR and APOA5 confer risk for early-onset myocardial infarction (2014) (147)
A Genome-Wide Association Study Identifies LIPA as a Susceptibility Gene for Coronary Artery Disease (2011) (141)
RNA-sequence analysis of human B-cells. (2011) (139)
MaCH‐Admix: Genotype Imputation for Admixed Populations (2013) (134)
A second independent locus within DMRT1 is associated with testicular germ cell tumor susceptibility. (2011) (133)
Meta-analysis of Dense Genecentric Association Studies Reveals Common and Uncommon Variants Associated with Height. (2011) (133)
Single cell transcriptomics identifies a unique adipose lineage cell population that regulates bone marrow environment (2020) (127)
Joint modeling of linkage and association: identifying SNPs responsible for a linkage signal. (2005) (126)
SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network (2021) (123)
Evaluation of coverage variation of SNP chips for genome-wide association studies (2008) (122)
ANGPT2 genetic variant is associated with trauma-associated acute lung injury and altered plasma angiopoietin-2 isoform ratio. (2011) (122)
Common Variants in HSPB7 and FRMD4B Associated With Advanced Heart Failure (2010) (121)
Enhanced Statistical Tests for GWAS in Admixed Populations: Assessment using African Americans from CARe and a Breast Cancer Consortium (2011) (117)
Comprehensive analysis of gene expression in human retina and supporting tissues (2014) (112)
Efficient study designs for test of genetic association using sibship data and unrelated cases and controls. (2006) (109)
Deep learning enables accurate clustering with batch effect removal in single-cell RNA-seq analysis (2020) (109)
Role of BMI‐Associated Loci Identified in GWAS Meta‐Analyses in the Context of Common Childhood Obesity in European Americans (2011) (105)
Functional analysis and transcriptomic profiling of iPSC-derived macrophages and their application in modeling Mendelian disease. (2015) (101)
A genome-wide study reveals copy number variants exclusive to childhood obesity cases. (2010) (100)
Loss-of-function DNA sequence variant in the CLCNKA chloride channel implicates the cardio-renal axis in interindividual heart failure risk variation (2011) (96)
Variation in the myosin light chain kinase gene is associated with development of acute lung injury after major trauma* (2008) (95)
Genetics of age-related macular degeneration (AMD). (2017) (93)
To identify associations with rare variants, just WHaIT: Weighted haplotype and imputation-based tests. (2010) (92)
Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network (2020) (90)
Lack of association between the Trp719Arg polymorphism in kinesin-like protein-6 and coronary artery disease in 19 case-control studies. (2010) (89)
Simvastatin vs therapeutic lifestyle changes and supplements: randomized primary prevention trial. (2008) (89)
Gene expression distribution deconvolution in single-cell RNA sequencing (2018) (88)
GWAsimulator: a rapid whole-genome simulation program (2007) (88)
Genome-wide comparison of African-ancestry populations from CARe and other cohorts reveals signals of natural selection. (2011) (88)
Genome Wide Association Identifies PPFIA1 as a Candidate Gene for Acute Lung Injury Risk Following Major Trauma (2012) (87)
Modeling genetic inheritance of copy number variations (2008) (86)
Single-cell dissection of intratumoral heterogeneity and lineage diversity in metastatic gastric adenocarcinoma (2021) (84)
Adeno-Associated Virus-Induced Dorsal Root Ganglion Pathology. (2020) (83)
Investigation of the Locus Near MC4R With Childhood Obesity in Americans of European and African Ancestry (2009) (83)
Dense Genotyping of Candidate Gene Loci Identifies Variants Associated With High-Density Lipoprotein Cholesterol (2011) (82)
Secretory phospholipase A(2)-IIA and cardiovascular disease: a mendelian randomization study. (2013) (80)
Secretory Phospholipase A2-IIA and Cardiovascular Disease (2013) (78)
The novel atherosclerosis locus at 10q11 regulates plasma CXCL12 levels. (2011) (78)
APOE and TREM2 regulate amyloid responsive microglia in Alzheimer’s disease (2020) (74)
Tissue-Specific RNA-Seq in Human Evoked Inflammation Identifies Blood and Adipose LincRNA Signatures of Cardiometabolic Diseases (2014) (74)
Meganuclease targeting of PCSK9 in macaque liver leads to stable reduction in serum cholesterol (2018) (73)
Single cell regulatory landscape of the mouse kidney highlights cellular differentiation programs and disease targets (2021) (73)
Gene expression recovery for single cell RNA sequencing (2017) (72)
Association of the Vitamin D Metabolism Gene CYP24A1 With Coronary Artery Calcification (2010) (71)
IL1RN coding variant is associated with lower risk of acute respiratory distress syndrome and increased plasma IL-1 receptor antagonist. (2013) (71)
SCALE: modeling allele-specific gene expression by single-cell RNA sequencing (2017) (69)
The long noncoding RNA landscape in hypoxic and inflammatory renal epithelial injury. (2015) (69)
Genetics of coronary artery calcification among African Americans, a meta-analysis (2013) (69)
Examination of Type 2 Diabetes Loci Implicates CDKAL1 as a Birth Weight Gene (2009) (66)
The Nuclear Receptor ESRRA Protects from Kidney Disease by Coupling Metabolism and Differentiation. (2020) (64)
Interrogating local population structure for fine mapping in genome-wide association studies (2010) (64)
Transferability and Fine Mapping of Type 2 Diabetes Loci in African Americans (2013) (63)
Assessing departure from Hardy‐Weinberg equilibrium in the presence of disease association (2008) (62)
Adjustment for local ancestry in genetic association analysis of admixed populations (2011) (60)
Evaluating the Impact of Sequencing Depth on Transcriptome Profiling in Human Adipose (2013) (59)
MicroRNA-mediated inhibition of transgene expression reduces dorsal root ganglion toxicity by AAV vectors in primates (2020) (59)
The role of height-associated loci identified in genome wide association studies in the determination of pediatric stature (2010) (57)
Transcriptome of the human retina, retinal pigmented epithelium and choroid. (2015) (56)
A Gaussian copula approach for the analysis of secondary phenotypes in case-control genetic association studies. (2012) (56)
Examination of All Type 2 Diabetes GWAS Loci Reveals HHEX-IDE as a Locus Influencing Pediatric BMI (2009) (56)
Identification of Genetic and Environmental Factors Predicting Metabolically Healthy Obesity in Children: Data From the BCAMS Study. (2016) (55)
Accounting for technical noise in differential expression analysis of single-cell RNA sequencing data (2017) (55)
ATOM: a powerful gene-based association test by combining optimally weighted markers (2009) (54)
Associations of CFHR1–CFHR3 deletion and a CFH SNP to age-related macular degeneration are not independent (2010) (53)
Genetic pleiotropy between age-related macular degeneration and 16 complex diseases and traits (2017) (53)
Candidate gene association study of coronary artery calcification in chronic kidney disease: findings from the CRIC study (Chronic Renal Insufficiency Cohort). (2013) (51)
Cell-Type-Specific Complement Expression in the Healthy and Diseased Retina (2019) (51)
A Review of Family-Based Tests for Linkage Disequilibrium between a Quantitative Trait and a Genetic Marker (2008) (50)
Iterative transfer learning with neural network for clustering and cell type classification in single-cell RNA-seq analysis (2020) (48)
CRISPR/Cas9-mediated in vivo gene targeting corrects hemostasis in newborn and adult factor IX knockout mice. (2019) (46)
Group Lasso Regularized Deep Learning for Cancer Prognosis from Multi-Omics and Clinical Features (2019) (46)
Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis (2020) (45)
Interrogation of nonconserved human adipose lincRNAs identifies a regulatory role of linc-ADAL in adipocyte metabolism (2018) (45)
Translational studies of lipoprotein-associated phospholipase A₂ in inflammation and atherosclerosis. (2012) (45)
Mapping the genetic architecture of human traits to cell types in the kidney identifies mechanisms of disease and potential treatments (2020) (44)
Prioritized Subset Analysis: Improving Power in Genome-wide Association Studies (2007) (44)
Strong Association of the Y 402 H Variant in Complement Factor H at 1 q 32 with Susceptibility to Age-Related Macular Degeneration (2005) (44)
Rare copy number variants in over 100,000 European ancestry subjects reveal multiple disease associations (2020) (43)
Correcting population stratification in genetic association studies using a phylogenetic approach (2010) (42)
PennSeq: accurate isoform-specific gene expression quantification in RNA-Seq by modeling non-uniform read distribution (2013) (42)
β-Hydroxybutyrate suppresses colorectal cancer (2022) (41)
U‐Statistics‐based Tests for Multiple Genes in Genetic Association Studies (2008) (38)
Quantitative Trait Linkage Analysis Using Gaussian Copulas (2006) (37)
Deep RNA Sequencing Uncovers a Repertoire of Human Macrophage Long Intergenic Noncoding RNAs Modulated by Macrophage Activation and Associated With Cardiometabolic Diseases (2017) (36)
Transcriptome-Wide Analysis Reveals Modulation of Human Macrophage Inflammatory Phenotype Through Alternative Splicing (2016) (36)
Mining the LIPG Allelic Spectrum Reveals the Contribution of Rare and Common Regulatory Variants to HDL Cholesterol (2011) (36)
A mutation-independent CRISPR-Cas9–mediated gene targeting approach to treat a murine model of ornithine transcarbamylase deficiency (2020) (35)
A functional synonymous coding variant in the IL1RN gene is associated with survival in septic shock. (2014) (35)
Genome-wide interrogation reveals hundreds of long intergenic noncoding RNAs that associate with cardiometabolic traits. (2016) (34)
A naturally occurring variant of endothelial lipase associated with elevated HDL exhibits impaired synthesis[S] (2009) (33)
Runs of Homozygosity: Association with Coronary Artery Disease and Gene Expression in Monocytes and Macrophages. (2015) (32)
Childhood retinol-binding protein 4 (RBP4) levels predicting the 10-year risk of insulin resistance and metabolic syndrome: the BCAMS study (2018) (32)
Deep learning enables accurate clustering with batch effect removal in single-cell RNA-seq analysis (2019) (32)
Sleep Duration and Cardiometabolic Risk Among Chinese School-aged Children: Do Adipokines Play a Mediating Role? (2017) (31)
ASEP: Gene-based detection of allele-specific expression across individuals in a population by RNA sequencing (2020) (31)
LIQA: long-read isoform quantification and analysis (2020) (29)
A transcriptome-wide association study based on 27 tissues identifies 106 genes potentially relevant for disease pathology in age-related macular degeneration (2020) (28)
Assessment of Probable Opioid Use Disorder Using Electronic Health Record Documentation (2020) (28)
Comparison of matrix metalloproteinase 9 and brain natriuretic peptide as clinical biomarkers in chronic heart failure. (2008) (27)
Genetic determinants of the ankle-brachial index: a meta-analysis of a cardiovascular candidate gene 50K SNP panel in the candidate gene association resource (CARe) consortium. (2012) (26)
Risk Factors and Outcomes for Vancomycin-Resistant Enterococcus Bloodstream Infection in Children (2010) (26)
Long-term Stable Reduction of Low-density Lipoprotein in Nonhuman Primates Following In Vivo Genome Editing of PCSK9. (2021) (26)
BMD‐Associated Variation at the Osterix Locus Is Correlated With Childhood Obesity in Females (2011) (25)
A joint deep learning model enables simultaneous batch effect correction, denoising, and clustering in single-cell transcriptomics (2020) (23)
Bayesian integration of genetics and epigenetics detects causal regulatory SNPs underlying expression variability (2015) (23)
Gene-based interaction analysis by incorporating external linkage disequilibrium information (2011) (22)
Expression of Calgranulin Genes S100A8, S100A9 and S100A12 Is Modulated by n-3 PUFA during Inflammation in Adipose Tissue and Mononuclear Cells (2017) (22)
Evaluating cost efficiency of SNP chips in genome‐wide association studies (2008) (22)
Adipose tissue RNASeq reveals novel gene-nutrient interactions following n-3 PUFA supplementation and evoked inflammation in humans. (2016) (22)
Corrigendum: Genetics of age-related macular degeneration (AMD) [Human Molecular Genetics, 26, R1, (2017) (R45-R50)] doi: 10.1093/hmg/ddx228 (2017) (21)
DISSCO: direct imputation of summary statistics allowing covariates (2015) (21)
Childhood sleep duration modifies the polygenic risk for obesity in youth through leptin pathway: the Beijing Child and Adolescent Metabolic Syndrome cohort study (2019) (21)
Statistical and machine learning methods for spatially resolved transcriptomics with histology (2021) (21)
LinkedSV for detection of mosaic structural variants from linked-read exome and genome sequencing data (2018) (21)
Circulating Osteonectin and Adipokine Profiles in Relation to Metabolically Healthy Obesity in Chinese Children: Findings From BCAMS (2018) (19)
Toll-like receptor 4 variant D 299 G is associated with susceptibility to age-related macular degeneration (2005) (19)
Pathologic gene network rewiring implicates PPP1R3A as a central regulator in pressure overload heart failure (2019) (19)
Common Variants in HSPB 7 and FRMD 4 B Associated With Advanced Heart Failure (2010) (19)
Response to Comments on “Widespread RNA and DNA Sequence Differences in the Human Transcriptome” (2012) (18)
Integrative genomics identifies 7p11.2 as a novel locus for fever and clinical stress response in humans. (2015) (18)
Thymic stromal lymphopoietin induces adipose loss through sebum hypersecretion (2021) (18)
GENIE: a software package for gene-gene interaction analysis in genetic association studies using multiple GPU or CPU cores (2011) (17)
SNP genotyping data high-resolution copy number variation detection in whole-genome PennCNV : An integrated hidden Markov model designed for Material Supplemental (2007) (16)
Secretory Phospholipase A2-IIA and Cardiovascular Disease A Mendelian Randomization Study (2017) (16)
Enhanced single-cell RNA-seq workflow reveals coronary artery disease cellular cross-talk and candidate drug targets. (2021) (15)
The Value of Statistical or Bioinformatics Annotation for Rare Variant Association With Quantitative Trait (2013) (15)
Copula Regression Analysis of Simultaneously Recorded Frontal Eye Field and Inferotemporal Spiking Activity during Object-Based Working Memory (2015) (15)
Implication of specific retinal cell-type involvement and gene expression changes in AMD progression using integrative analysis of single-cell and bulk RNA-seq profiling (2021) (15)
Identification of 22 susceptibility loci associated with testicular germ cell tumors (2021) (13)
Variation in the MYLK gene is associated with development of acute lung injury after major trauma (2008) (13)
Genome-wide linkage and association analysis of rheumatoid arthritis in a Canadian population (2007) (13)
Testing Genetic Association With Rare Variants in Admixed Populations (2013) (13)
Pathway-Wide Association Study Implicates Multiple Sterol Transport and Metabolism Genes in HDL Cholesterol Regulation (2011) (13)
Classes of ITD Predict Outcomes in AML Patients Treated with FLT3 Inhibitors (2018) (13)
MetaDiff: differential isoform expression analysis using random-effects meta-regression (2015) (12)
A Hierarchical Bayesian Model for Estimating and Inferring Differential Isoform Expression for Multi-sample RNA-Seq Data (2013) (12)
Novel variants in the PRDX6 Gene and the risk of Acute Lung Injury following major trauma (2011) (12)
Modeling allele-specific gene expression by single-cell RNA sequencing (2017) (12)
Detecting differential alternative splicing events in scRNA-seq with or without Unique Molecular Identifiers (2020) (11)
PennDiff: detecting differential alternative splicing and transcription by RNA sequencing (2018) (11)
Mapping Splicing Quantitative Trait Loci in RNA-Seq (2014) (11)
Sequence and Expression of Complement Factor H Gene Cluster Variants and Their Roles in Age-Related Macular Degeneration Risk (2016) (11)
Genetics of age-related macular degeneration (AMD). (2017) (11)
Improving power and robustness for detecting genetic association with extreme‐value sampling design (2011) (10)
The role of established East Asian obesity-related loci on pediatric leptin levels highlights a neuronal influence on body weight regulation in Chinese children and adolescents: the BCAMS study (2017) (10)
Intrathecal Viral Vector Delivery of Trastuzumab Prevents or Inhibits Tumor Growth of Human HER2-Positive Xenografts in Mice. (2018) (10)
Leveraging information in spatial transcriptomics to predict super-resolution gene expression from histology images in tumors (2021) (9)
Vector Generalized Linear Models: A Gaussian Copula Approach (2013) (9)
Detecting cell-type-specific allelic expression imbalance by integrative analysis of bulk and single-cell RNA sequencing data (2020) (9)
Comprehensive single cell RNAseq analysis of the kidney reveals novel cell types and unexpected cell plasticity (2017) (8)
Joint analysis of spikes and local field potentials using copula (2016) (8)
P Lack of Association Between the Trp 719 Arg Polymorphism in Kinesin-Like Protein-6 and Coronary Artery Disease in 19 Case-Control Studies (2010) (7)
RNA expression in human retina (2017) (7)
De novo RNA sequence assembly during in vivo inflammatory stress reveals hundreds of unannotated lincRNAs in human blood CD14+ monocytes and in adipose tissue. (2017) (7)
Accounting for technical noise in single-cell RNA sequencing analysis (2017) (7)
Profiling APOL1 Nephropathy Risk Variants in Genome-Edited Kidney Organoids with Single-Cell Transcriptomics. (2020) (7)
Role of adipokines FGF21, leptin and adiponectin in self-concept of youths with obesity (2018) (6)
Tissue-Specific Differential Expression of Novel Genes and Long Intergenic Noncoding RNAs in Humans With Extreme Response to Evoked Endotoxemia (2018) (6)
As in Real Estate, Location Matters: Cellular Expression of Complement Varies Between Macular and Peripheral Regions of the Retina and Supporting Tissues (2022) (6)
Adeno-associated virus-mediated expression of human butyrylcholinesterase to treat organophosphate poisoning (2019) (6)
Loss of Cardio-Protective Effects at the CDH13 Locus Due to Gene-Sleep Interaction: The BCAMS Study (2018) (6)
Development of a genotyping microarray for studying the role of gene-environment interactions in risk for lung cancer. (2013) (6)
Genome-Wide Meta-Analysis of Late-Onset Alzheimer's Disease Using Rare Variant Imputation in 324,809 Subjects Identifies Novel Rare Variant Locus NCK2: The International Genomics of Alzheimer's Project (IGAP) (2021) (6)
Erratum: Large-scale gene-centric meta-analysis across 39 studies identifies type 2 diabetes loci (American Journal of Human Genetics (2012) 90 (410-425)) (2012) (6)
Accurate and Rapid Sequence Analysis of Adeno-Associated Virus Plasmids by Illumina Next-Generation Sequencing. (2018) (6)
Association of the Vitamin D Metabolism Gene CYP 24 A 1 With Coronary Artery Calcification (2010) (5)
Applications of single-cell genomics and computational strategies to study common disease and population-level variation (2021) (5)
Mapping Splicing Quantitative Trait Loci in RNA-Seq (2015) (5)
Gene Expression Distribution Deconvolution in Single Cell RNA Sequencing (2017) (5)
Profiling APOL1 Nephropathy Risk Variants in Genome-Edited Kidney Organoids with Single-Cell Transcriptomics (2019) (5)
IL1RN Polymorphism Is Associated With Lower Risk Of Acute Lung Injury In Two Separate At-Risk Populations (2010) (5)
A multi-use deep learning method for CITE-seq and single-cell RNA-seq data integration with cell surface protein prediction and imputation (2022) (5)
HadoopCNV: A dynamic programming imputation algorithm to detect copy number variants from sequencing data (2017) (5)
Spatially resolved human kidney multi-omics single cell atlas highlights the key role of the fibrotic microenvironment in kidney disease progression (2022) (5)
Association of schizophrenia with the phenylthiocarbamide taste receptor haplotype on chromosome 7q (2012) (5)
Joint Regression Analysis of Correlated Data Using (2008) (4)
Inflammatory adipose activates a nutritional immunity pathway leading to retinal dysfunction (2022) (4)
First Giant Steps Toward a Cell Atlas of Atherosclerosis. (2018) (4)
Large Scale Genotyping in an African American Trauma Population Identifies Angiopoietin-2 Variants Associated with ALI. (2009) (4)
RNA-sequence analysis of human B-cells Material (2011) (4)
Likelihood Inferences on Semiparametric Odds Ratio Model (2015) (4)
A community overlap strategy reveals central genes and networks in heart failure (2016) (4)
The Single-Cell Immunogenomic Landscape of B and Plasma Cells in Early-Stage Lung Adenocarcinoma. (2022) (3)
Cognitive Abilities of Dogs with Mucopolysaccharidosis I: Learning and Memory (2020) (3)
Gene Mapping in Admixed Families: A Cautionary Note on the Interpretation of the Transmission Disequilibrium Test and a Possible Solution (2017) (3)
Genome-wide association study of kidney function decline in individuals of European descent: the CKDGen Consortium. (2015) (3)
Single cell resolution regulatory landscape of the mouse kidney highlights cellular differentiation programs and renal disease targets (2020) (3)
Integrative single-cell and bulk RNA-seq analysis in human retina identified cell type-specific composition and gene expression changes for age-related macular degeneration (2019) (2)
Comments on the entropy-based transmission/disequilibrium test (2008) (2)
Rejoinder to “Joint Regression Analysis for Discrete Longitudinal Data” by Madsen and Fang (2011) (2)
Benchmarking algorithms for joint integration of unpaired and paired single-cell RNA-seq and ATAC-seq data (2023) (2)
A Powerful Approach to Test an Optimally Weighted Combination of Rare Variants in Admixed Populations (2015) (2)
Abstract 18721: Diacylglycerol Kinase ? (DGKB) Genotype Predicts Response to Niacin Induced Flushing and Changes in Insulin in the Atherothrombosis Intervention in Metabolic Syndrome With Low HDL/High Triglycerides and Impact on Global Health Outcomes (AIM-HIGH) Trial (2013) (2)
ASSOCIATION OF GENOME WIDE LOCI FOR CAD WITH DISTRIBUTION OF CORONARY DISEASE (2010) (2)
Transient expansion and myofibroblast conversion of adipogenic lineage precursors mediate bone marrow repair after radiation (2022) (2)
MultiGeMS: detection of SNVs from multiple samples using model selection on high-throughput sequencing data (2016) (2)
Renal proximal tubule cell state and metabolism are coupled by nuclear receptors (2020) (2)
Abstract 2077: A Novel GWAS Atherosclerosis Locus Regulates Plasma Levels of CXCL12 (2009) (2)
Pathologic gene network rewiring implicates PPP1R3A as a central cardioprotective factor in pressure overload heart failure (2016) (2)
Transcriptome ' ' Response to Comments on ' ' Widespread RNA and DNA Sequence Differences in the Human (2012) (1)
MuSiC2: cell type deconvolution for multi-condition bulk RNA-seq data (2022) (1)
Genetics of coronary artery calcification among African (2013) (1)
Tempo: an unsupervised Bayesian algorithm for circadian phase inference in single-cell transcriptomics (2022) (1)
Semiparametric odds ratio model for case–control and matched case–control designs (2013) (1)
Abstract 4874: Large-Scale Candidate Gene Association with Human Heart Failure (2008) (1)
Genome Wide Association (GWA) Identifies Functional Susceptibility Loci For Trauma-Associated Acute Lung Injury (2010) (1)
Patterns of gene expression and allele-specific expression vary among macular tissues and clinical stages of Age-related Macular Degeneration (2023) (1)
The complexity of ABO in coronary heart disease – Authors' reply (2011) (1)
Associations of CFHR 1 – CFHR 3 deletion and a CFH snp to age-related macular degeneration (2010) (1)
Genetics and population analysis GWAsimulator : a rapid whole-genome simulation program (2007) (1)
Role of bone-associated loci identified in GWAS meta-analyses in the context of longitudinal pediatric BMD in European Americans (2013) (1)
Large Scale Genotyping In A Trauma Cohort Identifies Pathways Associated With Acute Kidney Injury Following Trauma (2010) (1)
Association of HMGA2 Gene Variation with Height in Specific Pediatric Age Categories (2008) (1)
Author response: Single cell transcriptomics identifies a unique adipose lineage cell population that regulates bone marrow environment (2020) (1)
Cognitive abilities of dogs with mucopolysaccharidosis type I: Learning and memory (2018) (1)
Data on copula modeling of mixed discrete and continuous neural time series (2016) (1)
Genetic pleiotropy between age-related macular degeneration and 16 complex diseases and traits (2017) (1)
Complement genes are differentially expressed in late age-related macular degeneration (AMD) and only in the neurosensory retina (2016) (1)
Erratum: Meta-analysis of dense genecentric association studies reveals common and uncommon variants associated with height ((The American Journal of Human Genetics (2010) 88 (6-18)) (2012) (1)
Abstract 747: Deciphering tumor ecosystems at super-resolution from spatial transcriptomics (2022) (0)
A transcriptome-wide association study based on 27 tissues identifies 106 genes potentially relevant for disease pathology in age-related macular degeneration (2020) (0)
Abstract 196: Modulation of Inflammatory Macrophage Phenotype Through Alternative Splicing (2015) (0)
Abstract 17619: Deep RNA-Sequencing Uncovers a Broad Species- And Cell-Specific lincRNA Repertoire That Modulates Human Macrophage Activation and Associates With Cardiometabolic Diseases (2017) (0)
Linkage Analysis of Qualitative Traits (2009) (0)
Edinburgh Research Explorer Secretory Phospholipase A2-IIA and Cardiovascular Disease (2018) (0)
Abstract 1205: Modeling spatially resolved cell-type-specific gene expression by weighted regression with SPACER (2022) (0)
Abstract 13251: Experimental Endotoxemia Uncovers a Genomic Basis for Thermoregulation: Chr7p11.2 Locus in Inflammatory Febrile Response and Temperature Homeostasis (2013) (0)
Abstract 219: Tissue-Specific RNAseq Identifies Novel and Cardiometabolic Disease--Associated Long Intergenic Noncoding RNAs in Human Adipose (2014) (0)
SCALE: modeling allele-specific gene expression by single-cell RNA sequencing (2017) (0)
Abstract 18901: Calgranulins S100A8, S100A9 and S100A12 are Novel Genes Modified by n-3 PUFA Supplementation and Evoked Endotoxemia in Humans (2014) (0)
Single-Cell RNA-Seq Gene Expression Recovery [R package SAVER version 1.1.2] (2019) (0)
Glycogenome signatures in complex cardiometabolic disease (789.4) (2014) (0)
RNA editing shows differences between macular and peripheral regions of human retina and supporting tissues (2016) (0)
Complement Landscape of the Mouse Retina Based on Single-cell Transcriptomics (2018) (0)
Pathologic gene network rewiring implicates PPP1R3A as a central regulator in pressure overload heart failure (2019) (0)
Human Macrophage Long Intergenic Noncoding RNA, SIMALR, Suppresses Inflammatory Macrophage Apoptosis via NTN1 (Netrin-1) (2022) (0)
Abstract 17862: Protection From Acute Myocardial Infarction in Humans is Associated With a Genetic Variation Near a Novel Gene Encoding a Human Protein Binding to a Mouse Model of Vulnerable Plaque (2010) (0)
Single-cell transcriptomics of the kidney reveals unexpected cellular targets of kidney diseases (2018) (0)
Single cell transcriptomics identifies a unique adipocyte population that regulates bone marrow environment (2019) (0)
Abstract 20439: Novel Long Intergenic Noncoding RNAs Modulate Adipose Functions in Human (2014) (0)
Genetics Pathway Analysis Integrating Genome-Wide and Functional Data Identifies PLCG 2 as a Candidate Gene for Age-Related Macular Degeneration (2019) (0)
Abstract 51: LincAQPEP, an Adipocyte-Specific Intergenic Noncoding RNA, Modulates Lipid Metabolism in Human Adipocytes (2015) (0)
Bulk tissue cell type deconvolution with multi-subject single-cell expression reference (2019) (0)
93137 Interrogating cardio-protective MTSS1 variants in human populations (2021) (0)
SpaDecon: cell-type deconvolution in spatial transcriptomics with semi-supervised learning (2023) (0)
Adipose transcriptomics reveals novel genes and lincRNAs modified by n‐3 PUFA supplementation and human‐evoked endotoxemia (383.1) (2014) (0)
Anatomical-spatial dissection of single-cell retinal transcriptomics yields new insights in complement regulation (2018) (0)
Differential expression of long noncoding RNAs is correlated with AMD phenotype (2016) (0)
Rare copy number variants in over 100,000 European ancestry subjects reveal multiple disease associations (2020) (0)
Abstract 18159: Transcriptomic Profiling of Isogenic PBMC-derived and iPSC-derived Macrophages and Their Polarization (2014) (0)
SAGES 2015. Symposium of Advances in Genomics, Epidemiology and Statistics 2015: Abstracts (2017) (0)
Abstract 13073: Chr10q11 Atherosclerosis Locus Modulation of Plasma and Adipose CXCL12 to in vivo Inflammation (2011) (0)
Coronary Artery Disease Candidate Gene Association Study of Coronary Artery Calcification in Chronic Kidney Disease FindingsFromtheCRICStudy ( ChronicRenal Insuf fi ciencyCohort ) (0)
Abstract 1218: HOPE2Net: Integrating histological features and position embeddings in spatially resolved transcriptomics to predict gene expression and pathway activities from histology images in tumors (2022) (0)
analyses of exonic number variants in a family-based study point to novel autism susceptibility genes. (2009) (0)
Abstract 16736: The Long Intergenic Non-coding RNA Landscape in Human Macrophage Activation (2016) (0)
Abstract 364: Modulation of Novel Long Intergenic Noncoding RNAs in Human Macrophage Polarization (2014) (0)
Supplementary Material (nature09270-s1) (2012) (0)
Discussion of “Exponential-Family Embedding With Application to Cell Developmental Trajectories for Single-Cell RNA-Seq Data” (2021) (0)
Identification of the ARMS2 Biological Pathway using CRISPR and the identification of genes involved in AMD (2016) (0)
Abstract 5097: High Density SNP Association Analysis of Potential HDL Candidate Genes Reveals Molecular Architecture and Functionally Relevant Domains: Focus on CETP (2008) (0)
Abstract 18773: Discovery and Translation of Novel Long Intergenic Non-Coding RNAs in Inflammatory Cardio-Metabolic Disorders (2013) (0)
A Hierarchical Bayesian Model for Estimating and Inferring Differential Isoform Expression for Multi-sample RNA-Seq Data (2011) (0)
Detecting differential alternative splicing events in scRNA-seq with or without UMIs (2019) (0)
Omnibus and robust deconvolution scheme for bulk RNA sequencing data integrating multiple single-cell reference sets and prior biological knowledge (2022) (0)
Abstract 6766: Pan-cancer characterization of tumor-immune interactions using spatially resolved transcriptomics (2023) (0)
Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA (2022) (0)
Abstract 390: Perilipin 1 (plin1) Genotype and Not Gpr109a Associated with Free Fatty Acid Rebound Following Niacin Administration (2013) (0)
Genetics of coronary artery calcification among (2013) (0)
Longitudinal Large-Scale Semiquantitative Proteomic Data Stability Across Multiple Instrument Platforms. (2021) (0)
Abstract 14363: Genetics of Coronary Atherosclerotic Plaque Rupture and Myocardial Infarction (2010) (0)
Abstract 13230: Convergence of CXCL12 and PHACTR1: Novel Genome Wide Signals for Myocardial Infarction Regulate Plasma CXCL12 Levels (2010) (0)
Protein-6 and Coronary Artery Disease in 19 Case-Control Studies Lack of Association Between the Trp719Arg Polymorphism in Kinesin-Like (2012) (0)
ASEP: gene-based detection of allele-specific expression in a population by RNA-seq (2019) (0)
Lack of Association Between the Trp 719 Arg Polymorphism in Kinesin-Like Protein-6 and Coronary Artery Disease in 19 Case-Control (2017) (0)
Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants Myocardial Infarction Genetics Consortium * (2009) (0)
Gene expression imputation and clustering with batch effect removal in single-cell RNA-seq analysis by deep learning (2019) (0)

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