A. Murat Eren
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Most Influential Person Now
Researcher, ORCID id # 0000-0001-9013-4827
A. Murat Eren's AcademicInfluence.com Rankings
A. Murat Erencomputer-science Degrees
Computer Science
#8950
World Rank
#9406
Historical Rank
#1725
USA Rank
Algorithms
#426
World Rank
#431
Historical Rank
#41
USA Rank
Machine Learning
#5243
World Rank
#5309
Historical Rank
#206
USA Rank
Database
#8480
World Rank
#8879
Historical Rank
#1124
USA Rank
A. Murat Erenbiology Degrees
Biology
#13584
World Rank
#17138
Historical Rank
#2698
USA Rank
Bioinformatics
#200
World Rank
#202
Historical Rank
#25
USA Rank
Computational Biology
#364
World Rank
#366
Historical Rank
#47
USA Rank
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Computer Science Biology
A. Murat Eren's Degrees
- PhD Bioinformatics Stanford University
- Masters Computer Science Carnegie Mellon University
- Bachelors Computer Engineering Middle East Technical University
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Why Is A. Murat Eren Influential?
(Suggest an Edit or Addition)According to Wikipedia, A. Murat Eren is a computer scientist known for his work on microbial ecology and developing novel, open-source, computational tools for analysis of large data sets. Early life and education Eren grew up in the Barhal Valley in Turkey and studied cryptography as an undergraduate at Canakkale Onsekiz Mart Universitesi where he earned a B.S. in 2002. He moved to the United States and started his Ph.D. at the University of New Orleans. While working at the Children's Hospital of New Orleans, Eren was introduced to microbiology by Michael Ferris. In 2011 Eren completed his Ph.D.; his dissertation was titled Assessing microbial diversity through nucleotide variation.
A. Murat Eren's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Anvi’o: an advanced analysis and visualization platform for ‘omics data (2015) (1148)
- Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea (2017) (990)
- Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data (2013) (526)
- Minimum entropy decomposition: Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences (2014) (452)
- The gut microbiota of rural papua new guineans: composition, diversity patterns, and ecological processes. (2015) (423)
- Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes (2018) (326)
- A Filtering Method to Generate High Quality Short Reads Using Illumina Paired-End Technology (2013) (251)
- Oligotyping analysis of the human oral microbiome (2014) (248)
- Linking pangenomes and metagenomes: the Prochlorococcus metapangenome (2018) (232)
- Microbial signals drive pre-leukaemic myeloproliferation in a Tet2-deficient host (2018) (227)
- Sewage Reflects the Microbiomes of Human Populations (2015) (208)
- Extensive Modulation of the Fecal Metagenome in Children With Crohn's Disease During Exclusive Enteral Nutrition (2015) (207)
- Ecological Succession and Stochastic Variation in the Assembly of Arabidopsis thaliana Phyllosphere Communities (2014) (205)
- Community-led, integrated, reproducible multi-omics with anvi’o (2020) (203)
- Host-specificity among abundant and rare taxa in the sponge microbiome (2014) (194)
- Accurate and complete genomes from metagenomes (2019) (187)
- VAMPS: a website for visualization and analysis of microbial population structures (2014) (185)
- Global phylogeography and ancient evolution of the widespread human gut virus crAssphage (2019) (148)
- Millions of reads, thousands of taxa: microbial community structure and associations analyzed via marker genes. (2016) (147)
- DESMAN: a new tool for de novo extraction of strains from metagenomes (2017) (137)
- A single genus in the gut microbiome reflects host preference and specificity (2014) (134)
- Discovering new indicators of fecal pollution. (2014) (133)
- Humpback Whale Populations Share a Core Skin Bacterial Community: Towards a Health Index for Marine Mammals? (2014) (111)
- Recurrent patterns of microdiversity in a temperate coastal marine environment (2017) (102)
- Sewage reflects the distribution of human faecal Lachnospiraceae. (2013) (100)
- Peripartum Antibiotics Promote Gut Dysbiosis, Loss of Immune Tolerance, and Inflammatory Bowel Disease in Genetically Prone Offspring. (2017) (83)
- Identifying contamination with advanced visualization and analysis practices: metagenomic approaches for eukaryotic genome assemblies (2016) (81)
- Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome (2020) (77)
- Fecal source identification using random forest (2018) (73)
- Composite Metagenome-Assembled Genomes Reduce the Quality of Public Genome Repositories (2019) (68)
- Reconstructing rare soil microbial genomes using in situ enrichments and metagenomics (2015) (67)
- Tracking microbial colonization in fecal microbiota transplantation experiments via genome-resolved metagenomics (2017) (66)
- Single-amino acid variants reveal evolutionary processes that shape the biogeography of a global SAR11 subclade (2019) (64)
- A Few Pseudomonas Oligotypes Dominate in the Meat and Dairy Processing Environment (2017) (64)
- Co-occurring genomic capacity for anaerobic methane and dissimilatory sulfur metabolisms discovered in the Korarchaeota (2019) (59)
- Genomic variation in microbial populations inhabiting the marine subseafloor at deep-sea hydrothermal vents (2017) (54)
- B cell superantigens in the human intestinal microbiota (2019) (51)
- Comparison of Sewage and Animal Fecal Microbiomes by Using Oligotyping Reveals Potential Human Fecal Indicators in Multiple Taxonomic Groups (2015) (49)
- Droplet-based high-throughput cultivation for accurate screening of antibiotic resistant gut microbes (2020) (49)
- New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes (2018) (45)
- Gut microbes contribute to variation in solid organ transplant outcomes in mice (2018) (44)
- Correction: Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea (2018) (43)
- Functional repertoire convergence of distantly related eukaryotic plankton lineages revealed by genome-resolved metagenomics (2020) (43)
- Microbiome characterization by high-throughput transfer RNA sequencing and modification analysis (2018) (40)
- Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis (2013) (38)
- STRONG: metagenomics strain resolution on assembly graphs (2021) (35)
- Minimizing confounders and increasing data quality in murine models for studies of the gut microbiome (2018) (34)
- Genome reconstructions indicate the partitioning of ecological functions inside a phytoplankton bloom in the Amundsen Sea, Antarctica (2015) (34)
- Disinfection exhibits systematic impacts on the drinking water microbiome (2019) (33)
- Patient-Specific Bacteroides Genome Variants in Pouchitis (2016) (33)
- Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean (2022) (33)
- Blautia and Prevotella sequences distinguish human and animal fecal pollution in Brazil surface waters. (2014) (33)
- The Wolbachia mobilome in Culex pipiens includes a putative plasmid (2019) (32)
- Correction: Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea (2018) (31)
- Dynamics of tongue microbial communities with single-nucleotide resolution using oligotyping (2014) (31)
- Microbial metabolites in the marine carbon cycle (2022) (30)
- Unifying the known and unknown microbial coding sequence space (2020) (28)
- Transcriptome-wide reprogramming of N6-methyladenosine modification by the mouse microbiome (2018) (26)
- Metapangenomics of the oral microbiome provides insights into habitat adaptation and cultivar diversity (2020) (25)
- Correction: A Filtering Method to Generate High Quality Short Reads Using Illumina Paired-End Technology (2013) (25)
- Interferon inducible pseudouridine modification in human mRNA by quantitative nanopore profiling (2021) (20)
- Heterotrophic bacterial diazotrophs are more abundant than their cyanobacterial counterparts in metagenomes covering most of the sunlit ocean (2021) (20)
- Early Transcriptomic Changes in the Ileal Pouch Provide Insight into the Molecular Pathogenesis of Pouchitis and Ulcerative Colitis. (2017) (18)
- SeaBase: a multispecies transcriptomic resource and platform for gene network inference. (2014) (18)
- tRNA modification dynamics from individual organisms to metaepitranscriptomics of microbiomes. (2022) (15)
- Pattern recognition-informed feedback for nanopore detector cheminformatics. (2010) (14)
- Adaptive ecological processes and metabolic independence drive microbial colonization and resilience in the human gut (2021) (14)
- High molecular weight DNA extraction strategies for long‐read sequencing of complex metagenomes (2021) (13)
- Early-life microbial restitution reduces colitis risk promoted by antibiotic-induced gut dysbiosis in IL-10-/- mice. (2021) (13)
- FORENSIC: an Online Platform for Fecal Source Identification (2020) (12)
- Metagenomics Strain Resolution on Assembly Graphs (2020) (12)
- De novo extraction of microbial strains from metagenomes reveals intra-species niche partitioning (2016) (11)
- Genome-resolved insights into a novel Spiroplasma symbiont of the Wheat Stem Sawfly (Cephus cinctus) (2019) (11)
- Differential prevalence and host-association of antimicrobial resistance traits in disinfected and non-disinfected drinking water systems. (2020) (11)
- Editorial: New Insights into Microbial Ecology through Subtle Nucleotide Variation (2016) (11)
- Author Correction: Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes (2018) (10)
- The global biogeography of amino acid variants within a single SAR11 population is governed by natural selection (2017) (10)
- Correction to: Heterotrophic bacterial diazotrophs are more abundant than their cyanobacterial counterparts in metagenomes covering most of the sunlit ocean (2021) (10)
- The genetic and ecological landscape of plasmids in the human gut (2022) (8)
- Biochemical diversity of glycosphingolipid biosynthesis as a driver of Coccolithovirus competitive ecology. (2019) (8)
- proovframe: frameshift-correction for long-read (meta)genomics (2021) (7)
- Light into the darkness: Unifying the known and unknown coding sequence space in microbiome analyses (2020) (6)
- A THESIS SUBMITTED TO THE GRADUATE SCHOOL OF NATURAL AND APPLIED SCIENCES OF MIDDLE EAST TECHNICAL UNIVERSITY (2006) (6)
- Light into the darkness: Unifying the known and unknown coding sequence space in microbiome analyses (2020) (6)
- AGNOSTOS-DB: a resource to unlock the uncharted regions of the coding sequence space (2021) (5)
- Disinfectant residuals in drinking water systems select for mycobacterial populations with intrinsic antimicrobial resistance (2019) (5)
- Unifying the global coding sequence space enables the study of genes with unknown function across biomes (2020) (4)
- Structure-informed microbial population genetics elucidate selective pressures that shape protein evolution (2022) (4)
- DRISEE overestimates errors in metagenomic sequencing data (2013) (4)
- Simulations predict microbial responses in the environment? This environment disagrees retrospectively (2017) (4)
- High-throughput isolation and sorting of gut microbes reduce biases of traditional cultivation strategies (2019) (3)
- Microbial Diversity and Interaction Specificity in Kombucha Tea Fermentations (2022) (3)
- Colwellia and Marinobacter metapangenomes reveal species-specific responses to oil and dispersant exposure in deepsea microbial communities (2020) (3)
- Linking comparative genomics and environmental distribution patterns of microbial populations through metagenomics (2016) (3)
- Disinfection exhibits systematic impacts on the drinking water microbiome (2020) (2)
- Early-life microbial intervention reduces colitis risk promoted by antibiotic-induced gut dysbiosis (2020) (2)
- Exceptionally versatile respiratory metabolisms drive metabolite production by diverse gut bacteria (2022) (2)
- High-resolution tracking of microbial colonization in Fecal Microbiota Transplantation experiments via metagenome-assembled genomes (2016) (2)
- Guts of the Urban Ecosystem: Microbial Ecology of Sewer Infrastructure (2022) (2)
- Author Correction: The Wolbachia mobilome in Culex pipiens includes a putative plasmid (2019) (2)
- Co-occurring genomic capacity for anaerobic methane and dissimilatory sulfur metabolisms discovered in the Korarchaeota (2019) (2)
- Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes (2018) (2)
- Interferon inducible pseudouridine modification in human mRNA by quantitative nanopore profiling (2021) (1)
- VAMPS: a website for visualization and analysis of microbial population structures (2014) (1)
- Metabolic independence drives gut microbial colonization and resilience in health and disease (2022) (1)
- Eco-evolutionary significance of domesticated retroelements in microbial genomes (2022) (1)
- DESMAN: a new tool for de novo extraction of strains from metagenomes (2017) (0)
- Fecal source identification using random forest (2018) (0)
- The Flowchart of Oligotyping and an Example Analysis to Highlight Concepts and Best Practices (2013) (0)
- Author Correction: The Wolbachia mobilome in Culex pipiens includes a putative plasmid (2019) (0)
- Sewage reflects the distribution of human faecal <i><fc>L</fc>achnospiraceae</i> (2013) (0)
- Detecting human sewage contamination in urban waters (2015) (0)
- pWCP is a widely distributed and highly conserved Wolbachia plasmid in Culex pipiens and Culex quinquefasciatus mosquitoes worldwide (2023) (0)
- Author response: Droplet-based high-throughput cultivation for accurate screening of antibiotic resistant gut microbes (2020) (0)
- Transient Suppression of Bacterial Populations Associated with Gut Health is Critical in Success of Exclusive Enteral Nutrition for Children with Crohn's Disease. (2023) (0)
- A highly conserved and globally prevalent cryptic plasmid is among the most numerous mobile genetic elements in the human gut (2023) (0)
- 17 PERIPARTUM ANTIBIOTIC EXPOSURE INDUCES PERSISTENT GUT DYSBIOSIS, IMPAIRS THE DEVELOPMENT OF IMMUNE TOLERANCE, AND INCREASES RISK FOR INFLAMMATORY BOWEL DISEASE IN GENETICALLY SUSCEPTIBLE OFFSPRING (2019) (0)
- STRONG: metagenomics strain resolution on assembly graphs (2021) (0)
- Complete Genome Sequence of Hyperthermophilic Archaeon Thermococcus sp. EXT12c, Isolated from the East Pacific Rise 9°N (2017) (0)
- Microbial signals drive pre-leukaemic myeloproliferation in a Tet2-deficient host (2018) (0)
- Tu1829 - Peripartum Exposure to Antibiotics Induces Persistent Gut Dysbiosis, Skews Host Immune System Development and Increases Risk for Inflammatory Bowel Disease in Genetically Susceptible offspring (2018) (0)
- Genomic variation in microbial populations inhabiting the marine subseafloor at deep-sea hydrothermal vents (2017) (0)
- PLoS Computational Biology Conference Postcard from PSB 2011 (2011) (0)
- Su2049 Colonic Cellular, Transcriptional and Microbial Changes in Response to Vitamin D: Interim Results From a 6-Month Vitamin D Intervention Trial in High-Risk African Americans (2016) (0)
- Tracking microbial colonization in fecal microbiota transplantation experiments via genome-resolved metagenomics (2017) (0)
- Correction to: Heterotrophic bacterial diazotrophs are more abundant than their cyanobacterial counterparts in metagenomes covering most of the sunlit ocean (2022) (0)
- Discovering plasmids in metagenomes based on genetic architecture (2020) (0)
- Genomic variation of subseafloor archaeal and bacterial populations from venting fluids at the Mid-Cayman Rise (2015) (0)
- The Wolbachia mobilome in Culex pipiens includes a putative plasmid (2019) (0)
- Microbiome characterization by high-throughput transfer RNA sequencing and modification analysis (2018) (0)
- ECOGEO 'Omics Training: 4.3 Binning Module - Anvi'o (2016) (0)
- The Diversity and Functional Capacity of Microbes Associated with Coastal Macrophytes (2022) (0)
- A comprehensive update to the Mycobacterium tuberculosis H37Rv reference genome (2022) (0)
- Community-led, integrated, reproducible multi-omics with anvi’o (2020) (0)
- Author Correction: A comprehensive update to the Mycobacterium tuberculosis H37Rv reference genome (2022) (0)
- Author response: Single-amino acid variants reveal evolutionary processes that shape the biogeography of a global SAR11 subclade (2019) (0)
- functional-dark-side/agnostos-wf: (2020) (0)
- The diversity and functional capacity of microbes associated with coastal phototrophs (2022) (0)
- Transcriptome-wide reprogramming of N6-methyladenosine modification by the mouse microbiome (2018) (0)
- Global phylogeography and ancient evolution of the widespread human gut virus crAssphage (2019) (0)
- Gut microbes contribute to variation in solid organ transplant outcomes in mice (2018) (0)
- Author Correction: Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes (2018) (0)
- pWCP is a widely distributed and highly conserved Wolbachia plasmid in Culex mosquitoes worldwide (2022) (0)
- Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis (2013) (0)
- Early Transcriptomic Changes in the Ileal Pouch Provide Insight into the Molecular Pathogenesis of Pouchitis and Ulcerative Colitis. (2017) (0)
- Eco-evolutionary significance of domesticated retroelements in microbial genomes (2022) (0)
- High molecular weight DNA extraction strategies for 1 long-read sequencing of complex metagenomes 2 (2021) (0)
- Assessing Microbial Diversity Through Nucleotide Variation (2011) (0)
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