Naama Barkai

Q: What Schools Are Affiliated With Naama Barkai

Naama Barkai is affiliated with the following schools: Weizmann Institute of Science, University of Minnesota, Hebrew University of Jerusalem, Tel Aviv University

Naama Barkai's AcademicInfluence.com Rankings

Naama Barkai

Physics

#4755

World Rank

#6477

Historical Rank

Biophysics

#354

World Rank

#366

Historical Rank

physics Degrees

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Physics

Naama Barkai's Degrees

PhD Physics Weizmann Institute of Science
Bachelors Physics Tel Aviv University

Why Is Naama Barkai Influential?

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According to Wikipedia, Naama Barkai is an Israeli systems biologist and professor for Molecular Genetics and Physics of Complex Systems at the Weizmann Institute of Science in Rehovot, Israel, and a member of the European Molecular Biology Organization .

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Naama Barkai's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Robustness in simple biochemical networks (1997) (1527)
Robustness in bacterial chemotaxis (1999) (1163)
Noise in protein expression scales with natural protein abundance (2006) (818)
Revealing modular organization in the yeast transcriptional network (2002) (762)
Mechanisms of noise-resistance in genetic oscillators (2002) (615)
Robustness of the BMP morphogen gradient in Drosophila embryonic patterning (2002) (473)
Iterative signature algorithm for the analysis of large-scale gene expression data. (2002) (460)
Two strategies for gene regulation by promoter nucleosomes. (2008) (416)
Similarities and Differences in Genome-Wide Expression Data of Six Organisms (2003) (391)
A Yeast Hybrid Provides Insight into the Evolution of Gene Expression Regulation (2009) (389)
Biological rhythms: Circadian clocks limited by noise (2000) (386)
Defining transcription modules using large-scale gene expression data (2004) (382)
Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae (2004) (293)
Self-enhanced ligand degradation underlies robustness of morphogen gradients. (2003) (291)
Rewiring of the Yeast Transcriptional Network Through the Evolution of Motif Usage (2005) (290)
A genetic signature of interspecies variations in gene expression (2006) (288)
The Cost of Protein Production (2015) (273)
Scaling of the BMP activation gradient in Xenopus embryos (2008) (240)
Noise Propagation and Signaling Sensitivity in Biological Networks: A Role for Positive Feedback (2007) (199)
Pre-Steady-State Decoding of the Bicoid Morphogen Gradient (2007) (192)
A Biological Solution to a Fundamental Distributed Computing Problem (2011) (151)
Noise–mean relationship in mutated promoters (2012) (149)
Scaling of morphogen gradients by an expansion-repression integral feedback control (2010) (145)
Comparative Gene Expression Analysis by a Differential Clustering Approach: Application to the Candida albicans Transcription Program (2005) (144)
Principles of cellular resource allocation revealed by condition-dependent proteome profiling (2017) (138)
Intrinsically Disordered Regions Direct Transcription Factor In Vivo Binding Specificity. (2020) (128)
Expression noise and acetylation profiles distinguish HDAC functions. (2012) (124)
Expansion-Repression Mechanism for Scaling the Dpp Activation Gradient in Drosophila Wing Imaginal Discs (2011) (117)
The evolving doublecortin (DCX) superfamily (2006) (116)
Variability and robustness in biomolecular systems. (2007) (115)
Promoter architecture and the evolvability of gene expression (2009) (109)
Expression homeostasis during DNA replication (2016) (101)
Elucidating mechanisms underlying robustness of morphogen gradients. (2004) (100)
Threshold responses to morphogen gradients by zero-order ultrasensitivity (2005) (97)
Comparative analysis indicates regulatory neofunctionalization of yeast duplicates (2007) (94)
On the relation between promoter divergence and gene expression evolution (2008) (90)
Epigenetically-Inherited Centromere and Neocentromere DNA Replicates Earliest in S-Phase (2010) (86)
DNA Crossover Motifs Associated with Epigenetic Modifications Delineate Open Chromatin Regions in Arabidopsis[OPEN] (2015) (80)
Linking the signaling cascades and dynamic regulatory networks controlling stress responses (2013) (79)
The pattern and evolution of yeast promoter bendability. (2007) (78)
Evolution of gene sequence and gene expression are not correlated in yeast. (2008) (77)
Scaling of morphogen gradients. (2011) (76)
Divergence of nucleosome positioning between two closely related yeast species: genetic basis and functional consequences (2010) (76)
Protease helps yeast find mating partners (1998) (76)
Scaling morphogen gradients during tissue growth by a cell division rule (2014) (76)
Strategy of Transcription Regulation in the Budding Yeast (2007) (76)
The Competitive Advantage of a Dual-Transporter System (2011) (74)
Robust generation and decoding of morphogen gradients. (2009) (74)
Error Minimization in Lateral Inhibition Circuits (2010) (73)
Evaluating putative mechanisms of the mitotic spindle checkpoint. (2005) (73)
Widespread remodeling of mid-coding sequence nucleosomes by Isw1 (2010) (70)
The DCX Superfamily 1: Common and Divergent Roles for Members of the Mouse DCX Superfamily (2006) (68)
The design of transcription-factor binding sites is affected by combinatorial regulation (2005) (67)
Morphogen gradient formation in a complex environment: an anomalous diffusion model. (2005) (67)
Modulation of the transcription regulatory program in yeast cells committed to sporulation (2006) (65)
Systematic identification of cell size regulators in budding yeast (2014) (64)
MRC1-dependent scaling of the budding yeast DNA replication timing program. (2010) (59)
Chromatin regulators as capacitors of interspecies variations in gene expression (2010) (56)
Spore germination in Saccharomyces cerevisiae: global gene expression patterns and cell cycle landmarks (2007) (55)
Dynamic lineage priming is driven via direct enhancer regulation by ERK (2019) (54)
Chromatin dynamics during DNA replication (2016) (53)
Self-Organized Shuttling: Generating Sharp Dorsoventral Polarity in the Early Drosophila Embryo (2012) (49)
Comparative biology: beyond sequence analysis. (2007) (48)
Conservation of Expression and Sequence of Metabolic Genes Is Reflected by Activity Across Metabolic States (2006) (45)
Creating gradients by morphogen shuttling. (2013) (43)
Coordination of gene expression with growth rate: A feedback or a feed‐forward strategy? (2009) (43)
Extensive divergence of yeast stress responses through transitions between induced and constitutive activation (2011) (41)
The Evolutionary Potential of Phenotypic Mutations (2015) (41)
Robust selection of sensory organ precursors by the Notch-Delta pathway. (2011) (40)
Coupling phenotypic persistence to DNA damage increases genetic diversity in severe stress (2017) (37)
Rethinking cell growth models. (2016) (37)
‘Big frog, small frog’– maintaining proportions in embryonic development (2009) (34)
Budding Yeast Escape Commitment to the Phosphate Starvation Program Using Gene Expression Noise (2013) (34)
Computational verification of protein-protein interactions by orthologous co-expression (2005) (34)
A repressor-decay timer for robust temporal patterning in embryonic Drosophila neuroblast lineages (2018) (33)
Inferring regulatory mechanisms from patterns of evolutionary divergence (2011) (33)
Buffering Global Variability of Morphogen Gradients. (2017) (31)
Re-examining the Stability of the Bicoid Morphogen Gradient (2008) (30)
Early commitment and robust differentiation in colonic crypts (2017) (30)
A WntD-Dependent Integral Feedback Loop Attenuates Variability in Drosophila Toll Signaling. (2016) (29)
Evolution of Nucleosome Occupancy: Conservation of Global Properties and Divergence of Gene-Specific Patterns (2011) (28)
Heterosis as a consequence of regulatory incompatibility (2017) (27)
Periodic patterning of the Drosophila eye is stabilized by the diffusible activator Scabrous (2016) (26)
Efficiency and specificity in microRNA biogenesis (2012) (25)
Nucleosome organization affects the sensitivity of gene expression to promoter mutations. (2012) (25)
Noise resistance in the spindle assembly checkpoint (2006) (24)
Autocorrelation analysis reveals widespread spatial biases in microarray experiments (2007) (24)
Hybrid vigor: The best of both parents, or a genomic clash? (2017) (24)
Epigenetic Control of Expression Homeostasis during Replication Is Stabilized by the Replication Checkpoint. (2018) (23)
Scaling of dorsal‐ventral patterning in the Xenopus laevis embryo (2014) (23)
Speed-Specificity Trade-Offs in the Transcription Factors Search for Their Genomic Binding Sites. (2021) (22)
Sequential feedback induction stabilizes the phosphate starvation response in budding yeast. (2014) (22)
Robust amplification in adaptive signal transduction networks (2001) (22)
Increasing population growth by asymmetric segregation of a limiting resource during cell division (2013) (21)
Resolving noise–control conflict by gene duplication (2019) (20)
Disentangling signaling gradients generated by equivalent sources (2012) (19)
Bacterial chemotaxis: United we sense ⃛ (1998) (18)
Dual role of starvation signaling in promoting growth and recovery (2017) (17)
Resolving noise-control conflict by gene duplication (2019) (17)
Coordination of Gene Expression and Growth-Rate in Natural Populations of Budding Yeast (2014) (16)
Order through disorder: The role of intrinsically disordered regions in transcription factor binding specificity. (2021) (16)
Promoter Nucleosome Organization Shapes the Evolution of Gene Expression (2012) (16)
Evolution of binding preferences among whole-genome duplicated transcription factors (2021) (16)
Modeling Pattern Formation: Counting to Two in the Drosophila Egg (2002) (16)
Improved readout precision of the Bicoid morphogen gradient by early decoding (2012) (15)
Interpreting clone-mediated perturbations of morphogen profiles. (2005) (15)
Dealing with Gene-Dosage Imbalance during S Phase. (2016) (15)
Loss of growth homeostasis by genetic decoupling of cell division from biomass growth: implication for size control mechanisms (2014) (14)
Uncovering targeting priority to yeast peroxisomes using an in-cell competition assay (2020) (13)
Reverse Engineering of the Spindle Assembly Checkpoint (2009) (12)
Dynamics of Spaetzle morphogen shuttling in the Drosophila embryo shapes gastrulation patterning (2019) (12)
Model-based analysis of DNA replication profiles: predicting replication fork velocity and initiation rate by profiling free-cycling cells (2017) (11)
The ups and downs of biological timers (2005) (11)
A Visual Framework for Classifying Determinants of Cell Size (2018) (11)
Checkpoint-independent scaling of the Saccharomyces cerevisiae DNA replication program (2014) (11)
Gene Transcription as a Limiting Factor in Protein Production and Cell Growth (2019) (10)
Transcription Factor Binding to Replicated DNA. (2020) (10)
The era of systems developmental biology. (2011) (9)
EGF receptor signaling — a quantitative view (2007) (8)
Independent evolution of transcript abundance and gene regulatory dynamics (2020) (8)
Rapid evolutionary adaptation to growth on an ‘unfamiliar’ carbon source (2016) (7)
Measurement of histone replacement dynamics with genetically encoded exchange timers in yeast (2021) (7)
Divergence and Selectivity of Expression-Coupled Histone Modifications in Budding Yeasts (2014) (6)
The Genetic Requirements for Pentose Fermentation in Budding Yeast (2017) (6)
Asymptotic Cellular Growth Rate as the Effective Information Utilization Rate (2013) (6)
A role for Rtt109 in buffering gene-dosage imbalance during DNA replication (2016) (6)
Transcription-factor binding to replicated DNA (2019) (5)
Evolution of transcription factor binding through sequence variations and turnover of binding sites (2022) (5)
Dealing with noise: The challenge of buffering biological variability (2017) (5)
A two-step patterning process increases the robustness of periodic patterning in the fly eye (2016) (5)
A transcriptome-wide analysis deciphers distinct roles of G1 cyclins in temporal organization of the yeast cell cycle (2019) (5)
Researchremodeling of mid-coding sequence nucleosomes by Isw1 (2010) (4)
A regulatory phosphorylation site on Mec1 controls chromatin occupancy of RNA polymerases during replication stress (2021) (4)
Accumulation of cis- and trans-regulatory variations is associated with phenotypic divergence of a complex trait between yeast species (2021) (4)
Rtt109 slows replication speed by histone N-terminal acetylation (2021) (4)
Saccharomyces cerevisiae Spore Germination (2010) (3)
Balancing robustness and evolvability in single cells and beyond (2018) (3)
Robustness in simple bioc h emic al netw orks (1997) (3)
Reconstituting tissue patterning (2020) (2)
Developmental biology: Segmentation within scale (2012) (2)
Physical aspects of precision in genetic regulation (2011) (2)
Dynamics of Spaetzle morphogen shuttling in the Drosophila embryo shapes pattern (2018) (2)
Natural Diversity in Pentose Fermentation Is Explained by Variations in Histone Deacetylases. (2016) (2)
Error Minization in Lateral Inhibition Circuits (2010) (2)
Yeast Hybrids and Polyploids as Models in Evolutionary Studies (2013) (1)
PLOS Biology 2015 Reviewer Thank You (2016) (1)
Pls1 Is a Peroxisomal Matrix Protein with a Role in Regulating Lysine Biosynthesis (2022) (1)
Global shape of Toll activation is determined by wntD enhancer properties (2020) (1)
Correction: Epigenetically-Inherited Centromere and Neocentromere DNA Replicates Earliest in S-Phase (2011) (1)
Scaling of the Bmp morphogen gradient in Xenopus embryos (2009) (1)
Mapping the architecture of regulatory variation provides insights into the evolution of complex traits (2020) (1)
Generation and timing of graded responses to morphogen gradients (2021) (1)
Probabilistic model of lateral inhibition : rules for successful selection (2010) (0)
The molecular grammar of protein disorder guiding genome-binding locations. (2023) (0)
The relative contribution of 'internal' vs. 'external' sensing to the regulation of gene expression in the budding yeast (2009) (0)
Complementary Strategies for Directing Transcription Factor Binding in-vivo Through DNA Binding Domains and Intrinsically Disordered Regions (2022) (0)
A two-step patterning process increases the robustness of periodic patterning in the fly eye (2016) (0)
Science Signaling Podcast: 6 July 2010 (2010) (0)
A Visual Framework for Cl assifying Determinants of Cell Size Graphical (2018) (0)
Reply to Francois et al. (2009) (0)
Expression Regulation A Yeast Hybrid Provides Insight into the Evolution of Gene (2014) (0)
S18-01 Scaling of morphogen gradients during embryonic development (2009) (0)
Supplementary Materials for Error Minimization in Lateral Inhibition Circuits (2010) (0)
Roles of G1 cyclins in the temporal organization of yeast cell cycle - a transcriptome-wide analysis (2018) (0)
TIGS 1305 No . of Pages 7 Bacteria : Imbalanced Expression as Readout of Cell Growth Rate (2016) (0)
Expansion-restriction of Spemann's organizer by an ADMP self-regulatory switch to scale the BMP gradient (2017) (0)
Correction: Epigenetically-Inherited Centromere and Neocentromere DNA Replicates Earliest in S-Phase (2011) (0)
Complementary strategies for directing in vivo transcription factor binding through DNA binding domains and intrinsically disordered regions. (2023) (0)
Disentangling signaling gradients generated by equivalent sources (2011) (0)
Dynamic lineage priming is driven via direct enhancer regulation by ERK (2019) (0)
Histone exchange sensors reveal variant specific dynamics in mouse embryonic stem cells (2022) (0)
A transcriptome-wide analysis deciphers distinct roles of G1 cyclins in temporal organization of the yeast cell cycle (2019) (0)
DOSSIER LA PHYSIQUE À L'ÉCHELLE DE LA CELLULE THE PHYSICS AT THE SCALE OF THE CELL (2001) (0)
Heterosis as a consequence of regulatory incompatibility The Harvard community made this article openly available. Please share how this access benefits you. Your story matters (2017) (0)
Noise-mean relationship in mutated promoters Material (2012) (0)
THE PHYSICS AT THE SCALE OF THE CELL Robust amplification in adaptive signal transduction networks (2001) (0)
Maximum Likelihood (ML) phylogenetic tree including DCX domain proteins from human and mouse, bootst (2011) (0)
Rapid evolutionary adaptation to growth on an ‘unfamiliar’ carbon source (2016) (0)
Publisher Correction: Measurement of histone replacement dynamics with genetically encoded exchange timers in yeast (2021) (0)
Heterosis as a consequence of regulatory incompatibility (2017) (0)
Title : Defining transcription modules using large-scale gene expression data (2004) (0)
Molecular Cell Noise and H 3 k 9 ac Distinguish between HDACs (2012) (0)
Checkpoint-independent scaling of the Saccharomyces cerevisiaeDNA replication program (2014) (0)
Improved readout precision of the Bicoid morphogen gradient by early decoding (2011) (0)
Rtt109 promotes nucleosome replacement ahead of the replication fork (2022) (0)
Program/Abstract # 361A role for ADMP in scaling of embryonic tissues to generate equally proportioned embryos (2011) (0)
Lighting Up ERK Activity. (2017) (0)
Large-scale rewiring in a yeast hybrid (2017) (0)
Principles of Systems Biology, No. 21. (2017) (0)
Sequential Feedback Indu ction Stabilizes the Phosphate Starvation Response in Budding Yeast Graphical (2014) (0)

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What Schools Are Affiliated With Naama Barkai?

Naama Barkai is affiliated with the following schools:

Naama Barkai's Academic­Influence.com Rankings