Nick Loman

Nick Loman's AcademicInfluence.com Rankings

Nick Loman

Biology

#8589

World Rank

#11689

Historical Rank

Virology

#270

World Rank

#277

Historical Rank

biology Degrees

Download Badge

Biology

Why Is Nick Loman Influential?

(Suggest an Edit or Addition)

According to Wikipedia, Nicholas James Loman was co-founder of the Gamer Network with his brother Rupert, which they started under the name Eurogamer Network in 1999. Nick left the business in 2004 to pursue a career in medicine.

(See a Problem?)

Nick Loman's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses (2014) (2297)
Performance comparison of benchtop high-throughput sequencing platforms (2012) (1345)
Nanopore sequencing and assembly of a human genome with ultra-long reads (2017) (1276)
Binning metagenomic contigs by coverage and composition (2014) (1271)
Real-time, portable genome sequencing for Ebola surveillance (2016) (1065)
A complete bacterial genome assembled de novo using only nanopore sequencing data (2015) (1017)
Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil (2021) (942)
Shotgun metagenomics, from sampling to analysis (2017) (883)
Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity (2020) (819)
Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England (2021) (806)
Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England (2021) (806)
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples (2017) (729)
SARS-CoV-2 evolution during treatment of chronic infection (2021) (647)
Transmission of SARS-CoV-2 Lineage B.1.1.7 in England: Insights from linking epidemiological and genetic data (2021) (557)
An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar (2018) (549)
Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B.1.617.2) compared with alpha (B.1.1.7) variants of concern: a cohort study (2021) (488)
Evolution and epidemic spread of SARS-CoV-2 in Brazil (2020) (459)
Telomere-to-telomere assembly of a complete human X chromosome (2019) (450)
Establishment and cryptic transmission of Zika virus in Brazil and the Americas (2017) (450)
High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity (2012) (431)
Genomic characterisation of an emergent SARS- CoV-2 lineage in Manaus: preliminary findings (2021) (419)
Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4. (2011) (417)
Towards a genomics-informed, real-time, global pathogen surveillance system (2017) (409)
Poretools: a toolkit for analyzing nanopore sequence data (2014) (398)
Nanopore native RNA sequencing of a human poly(A) transcriptome (2018) (335)
Virus genomes reveal factors that spread and sustained the Ebola epidemic (2017) (319)
Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK (2020) (288)
Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B.1.1.7 (2021) (285)
Coast-to-Coast Spread of SARS-CoV-2 during the Early Epidemic in the United States (2020) (284)
A culture-independent sequence-based metagenomics approach to the investigation of an outbreak of Shiga-toxigenic Escherichia coli O104:H4. (2013) (283)
Genomic epidemiology reveals multiple introductions of Zika virus into the United States (2017) (272)
Co-infections: potentially lethal and unexplored in COVID-19 (2020) (271)
Improvements to the ARTIC multiplex PCR method for SARS-CoV-2 genome sequencing using nanopore (2020) (262)
Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China (2020) (259)
Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella (2015) (256)
Genomic and epidemiological monitoring of yellow fever virus transmission potential (2018) (232)
Twenty years of bacterial genome sequencing (2015) (228)
A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer (2014) (210)
Extensive Modulation of the Fecal Metagenome in Children With Crohn's Disease During Exclusive Enteral Nutrition (2015) (207)
Defining bacterial species in the genomic era: insights from the genus Acinetobacter (2012) (192)
De novo Identification of DNA Modifications Enabled by Genome-Guided Nanopore Signal Processing (2017) (187)
Resurgence of Ebola Virus Disease in Guinea Linked to a Survivor With Virus Persistence in Seminal Fluid for More Than 500 Days (2016) (186)
Ultra-deep, long-read nanopore sequencing of mock microbial community standards (2018) (172)
Mobile real-time surveillance of Zika virus in Brazil (2016) (163)
CLIMB (the Cloud Infrastructure for Microbial Bioinformatics): an online resource for the medical microbiology community (2016) (163)
Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020 (2020) (163)
xBASE2: a comprehensive resource for comparative bacterial genomics (2007) (154)
High-throughput whole-genome sequencing to dissect the epidemiology of Acinetobacter baumannii isolates from a hospital outbreak. (2010) (150)
Identification of Novel Imidazo[1,2-a]pyridine Inhibitors Targeting M. tuberculosis QcrB (2012) (147)
High-throughput sequencing and clinical microbiology: progress, opportunities and challenges. (2010) (139)
Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe (2015) (135)
SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway (2022) (130)
Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium (2015) (127)
Successful test launch for nanopore sequencing (2015) (120)
Identification of Common Deletions in the Spike Protein of Severe Acute Respiratory Syndrome Coronavirus 2 (2020) (116)
Tetrahydropyrazolo[1,5-a]Pyrimidine-3-Carboxamide and N-Benzyl-6′,7′-Dihydrospiro[Piperidine-4,4′-Thieno[3,2-c]Pyran] Analogues with Bactericidal Efficacy against Mycobacterium tuberculosis Targeting MmpL3 (2013) (114)
Real-time digital pathogen surveillance — the time is now (2015) (113)
Parallel evolutionary pathways to antibiotic resistance selected by biocide exposure (2015) (113)
Seeking the source of Pseudomonas aeruginosa infections in a recently opened hospital: an observational study using whole-genome sequencing (2014) (111)
Generation and transmission of interlineage recombinants in the SARS-CoV-2 pandemic (2021) (108)
Extreme genetic fragility of the HIV-1 capsid (2013) (105)
Whole-genome comparison of two Acinetobacter baumannii isolates from a single patient, where resistance developed during tigecycline therapy. (2011) (102)
Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence (2021) (96)
Treatment of COVID-19 with remdesivir in the absence of humoral immunity: a case report (2020) (91)
Extreme Genetic Fragility of the HIV-1 Capsid (2013) (87)
Exponential growth, high prevalence of SARS-CoV-2, and vaccine effectiveness associated with the Delta variant (2021) (82)
Ebola Virus Persistence in Breast Milk After No Reported Illness: A Likely Source of Virus Transmission From Mother to Child (2016) (79)
A Cross-Sectional Survey of Bacterial Species in Plaque from Client Owned Dogs with Healthy Gingiva, Gingivitis or Mild Periodontitis (2013) (79)
Importation and early local transmission of COVID-19 in Brazil, 2020 (2020) (78)
CONCOCT: Clustering cONtigs on COverage and ComposiTion (2013) (77)
Reagent contamination can critically impact sequence-based microbiome analyses (2014) (73)
An abundance of bacterial ADP-ribosyltransferases--implications for the origin of exotoxins and their human homologues. (2001) (68)
Pseudomonas aeruginosa adaptation in the nasopharyngeal reservoir leads to migration and persistence in the lungs (2014) (67)
Identification of KasA as the cellular target of an anti-tubercular scaffold (2016) (66)
Epidemiological investigation of Pseudomonas aeruginosa isolates from a six-year-long hospital outbreak using high-throughput whole genome sequencing. (2013) (63)
The effect of DNA extraction methodology on gut microbiota research applications (2016) (62)
Genomic, epidemiological and digital surveillance of Chikungunya virus in the Brazilian Amazon (2019) (59)
Genomic reconstruction of the SARS-CoV-2 epidemic in England (2021) (59)
A Pilot Integrative Analysis of Colonic Gene Expression, Gut Microbiota, and Immune Infiltration in Primary Sclerosing Cholangitis-Inflammatory Bowel Disease: Association of Disease With Bile Acid Pathways (2020) (57)
Microbial TIR domains: not necessarily agents of subversion? (2009) (56)
Sequencing of the Francisella tularensis strain Schu 4 genome reveals the shikimate and purine metabolic pathways, targets for the construction of a rationally attenuated auxotrophic vaccine. (2000) (56)
The Complete Genome and Proteome of Laribacter hongkongensis Reveal Potential Mechanisms for Adaptations to Different Temperatures and Habitats (2009) (55)
Clusters of genetically similar isolates of Pseudomonas aeruginosa from multiple hospitals in the UK. (2013) (50)
Complete Genome Sequence of the Crohn's Disease-Associated Adherent-Invasive Escherichia coliStrain HM605 (2011) (43)
Mycobacterial Dihydrofolate Reductase Inhibitors Identified Using Chemogenomic Methods and In Vitro Validation (2015) (41)
Next-Generation Sequencing—the Promise and Perils of Charting the Great Microbial Unknown (2008) (41)
Inhibiting mycobacterial tryptophan synthase by targeting the inter-subunit interface (2017) (39)
Erratum: A reference bacterial genome dataset generated on the MinIONTM portable single-molecule nanopore sequencer (2015) (39)
The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK (2022) (39)
Identification of common deletions in the spike protein of SARS-CoV-2. (2020) (38)
Characterization of mutations in the PAS domain of the EvgS sensor kinase selected by laboratory evolution for acid resistance in Escherichia coli (2014) (38)
CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance (2021) (37)
Bacterial flagellar diversity and evolution: seek simplicity and distrust it? (2009) (37)
Sensitivity of SARS-CoV-2 B.1.1.7 to mRNA vaccine-elicited antibodies (2021) (37)
Corrigendum: Performance comparison of benchtop high-throughput sequencing platforms (2012) (36)
Coast-to-coast spread of SARS-CoV-2 in the United States revealed by genomic epidemiology (2020) (35)
Sequencing a piece of history: complete genome sequence of the original Escherichia coli strain (2017) (34)
Genomic and Epidemiological Surveillance of Zika Virus in the Amazon Region. (2020) (32)
Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 – 2018 (2019) (31)
Recurrent SARS-CoV-2 mutations in immunodeficient patients (2022) (31)
Biochemical and Structural Characterization of Mycobacterial Aspartyl-tRNA Synthetase AspS, a Promising TB Drug Target (2014) (29)
Screening faecal microbiota transplant donors for SARS-CoV-2 by molecular testing of stool is the safest way forward (2020) (28)
The distinct features of microbial ‘dysbiosis’ of Crohn’s disease do not occur to the same extent in their unaffected, genetically-linked kindred (2017) (26)
Context-specific emergence and growth of the SARS-CoV-2 Delta variant (2021) (26)
Genome Analysis of a Highly Virulent Serotype 1 Strain of Streptococcus pneumoniae from West Africa (2012) (25)
Are diagnostic and public health bacteriology ready to become branches of genomic medicine? (2011) (25)
Clonal Expansion within Pneumococcal Serotype 6C after Use of Seven-Valent Vaccine (2013) (24)
Corrigendum: Shotgun metagenomics, from sampling to analysis (2017) (24)
Deletions in a ribosomal protein-coding gene are associated with tigecycline resistance in Enterococcus faecium. (2015) (23)
Videos, photographs, and patient consent (1998) (23)
Genome Sequences of Three Acinetobacter baumannii Strains Assigned to the Multilocus Sequence Typing Genotypes ST2, ST25, and ST78 (2011) (23)
Reply to ‘Errors in long-read assemblies can critically affect protein prediction’ (2019) (22)
Unusual Ebola Virus Chain of Transmission, Conakry, Guinea, 2014–2015 (2016) (22)
Post-acute COVID-19 associated with evidence of bystander T-cell activation and a recurring antibiotic-resistant bacterial pneumonia (2020) (21)
XDR-TB genome sequencing: a glimpse of the microbiology of the future. (2008) (21)
Genomic detection of a virus lineage replacement event of dengue virus serotype 2 in Brazil, 2019 (2020) (19)
Genome Sequence of the Emerging Pathogen Helicobacter canadensis (2009) (19)
Genomic sequencing of SARS-CoV-2 in Rwanda reveals the importance of incoming travelers on lineage diversity (2021) (18)
Simple sequence repeats in Helicobacter canadensis and their role in phase variable expression and C-terminal sequence switching (2010) (17)
Identification of a common deletion in the spike protein of SARS-CoV-2 (2020) (17)
Publisher Correction: SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway (2022) (15)
MAJORA: Continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance (2020) (15)
The TCA cycle is not required for selection or survival of multidrug-resistant Salmonella. (2012) (14)
Calculating Orthologs in Bacteria and Archaea: A Divide and Conquer Approach (2011) (13)
Context-specific emergence and growth of the SARS-CoV-2 Delta variant (2022) (12)
Generation and transmission of inter-lineage recombinants in the SARS-CoV-2 pandemic (2021) (12)
Staphylococcal species heterogeneity in the nasal microbiome following antibiotic prophylaxis revealed by tuf gene deep sequencing (2016) (12)
Field investigation with real-time virus genetic characterisation support of a cluster of Ebola virus disease cases in Dubréka, Guinea, April to June 2015 (2018) (11)
Shotgun metagenomic sequencing of the first case of monkeypox virus in Brazil, 2022 (2022) (11)
Virus genomes reveal the factors that spread and sustained the West African Ebola epidemic (2016) (9)
Observations of SARS-CoV-2 variant of concern B.1.1.7 at the UK's largest hospital trust (2021) (9)
Genomic Sequencing of SARS-COV-2 in Rwanda: evolution and regional dynamics (2021) (9)
A multi-targeting pre-clinical candidate against drug-resistant tuberculosis. (2021) (9)
Evaluation of full-length nanopore 16S sequencing for detection of pathogens in microbial keratitis (2021) (9)
Role of Faecalibacterium prausnitzii in Crohn's Disease: friend, foe, or does not really matter? (2014) (9)
Genomics-informed outbreak investigations of SARS-CoV-2 using civet (2021) (8)
Draft Genome Sequence of Elizabethkingia meningoseptica Isolated from a Traumatic Wound (2014) (8)
STOP-Colitis pilot trial protocol: a prospective, open-label, randomised pilot study to assess two possible routes of faecal microbiota transplant delivery in patients with ulcerative colitis (2019) (8)
Details of SARS-CoV-2 reinfections at a major UK tertiary centre (2021) (7)
Transmission, adaptation and geographical spread of the Pseudomonas aeruginosa Liverpool epidemic strain (2021) (7)
DNA Extraction Strategies for Nanopore Sequencing (2019) (6)
CLIMB ( the Cloud Infrastructure for Microbial Bioinformatics ) (2016) (6)
Complete Closed Genome Sequence of Nontoxigenic Invasive Corynebacterium diphtheriae bv. mitis Strain ISS 3319 (2018) (6)
Tricorn-like proteases in bacteria. (2001) (6)
Development of a whole‐cell high‐throughput phenotypic screen to identify inhibitors of mycobacterial amino acid biosynthesis (2019) (6)
Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission (2022) (5)
Rapid viral metagenomics using SMART-9N amplification and nanopore sequencing (2021) (5)
Pseudomonas aeruginosa infection in augmented care: the molecular ecology and transmission dynamics in four large UK hospitals. (2021) (5)
Gut Dysbiosis in Ocular Mucous Membrane Pemphigoid (2022) (5)
CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance (2021) (5)
Multiple introductions of Zika virus into the United States revealed through genomic epidemiology (2017) (5)
First Complete Genome Sequences of Zika Virus Isolated from Febrile Patient Sera in Ecuador (2017) (5)
EntrezAJAX: direct web browser access to the Entrez Programming Utilities (2010) (4)
Contagion: a worthy entrant in the outbreak film genre (2015) (4)
Author Correction: Nanopore native RNA sequencing of a human poly(A) transcriptome (2019) (4)
Putative APOBEC3 deaminase editing in MPXV as evidence for sustained human transmission since at least 2016 (2023) (4)
OP09 Immunomodulatory mechanisms of faecal microbiota transplantation are associated with clinical response in ulcerative colitis: early results from STOP-Colitis (2020) (4)
Early identification of dengue virus lineage replacement in Brazil using portable genomic surveillance (2019) (3)
Molecular and genomic investigation of an urban outbreak of dengue virus serotype 2 in Angola, 2017–2019 (2022) (3)
SARS-CoV-2 Testing in the Community: Testing Positive Samples with the TaqMan SARS-CoV-2 Mutation Panel To Find Variants in Real Time (2022) (3)
Anti-tubercular derivatives of rhein require activation by the monoglyceride lipase Rv0183 (2020) (2)
SARS-CoV-2 testing in the community: Testing positive samples with the TaqMan SARS-CoV-2 Mutation Panel to find variants in real-time (2021) (2)
Shotgun metagenomics , from sampling to sequencing and analysis (2017) (2)
Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1 (2023) (2)
Comparative bacterial genomics (2012) (2)
A detailed analysis of the gut microbial diversity and metabolic activity in children with obesity of different aetiology and lean controls (2015) (2)
O9 STOP-colitis pilot: prospective, open-label, randomised study comparing nasogastric versus colonic FMT delivery in ulcerative colitis (2021) (1)
148 Use of whole-genome sequencing to identify transmission of Pseudomonas aeruginosa between cystic fibrosis patients (2014) (1)
Investigation of hospital discharge cases and SARS-CoV-2 introduction into Lothian care homes (2023) (1)
Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning (2022) (1)
Defining bacterial species in the genomic era: insights from the genus Acinetobacter (2012) (1)
Context-specific emergence and growth of the SARS-CoV-2 Delta variant (2021) (1)
O48 Novel interactions between bacterial strains and mucosal immune profiles after FMT for UC: STOP-colitis results (2022) (1)
OP-10 Gut microbiota dysbiosis as a driver of inflammation in Ocular Mucous Membrane Pemphigoid. (2022) (1)
Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella (2015) (1)
Chikungunya virus outbreak in the Amazon region: replacement of the Asian genotype by an ECSA lineage? (2018) (1)
Successful treatment of COVID-19 with remdesivir in the absence of humoral immunity (2020) (1)
SARS-CoV-2 evolution during treatment of chronic infection (2021) (0)
O-05: Metagenomic analysis of the gut microbiome during a course of Exclusive Enteral Nutrition (EEN) provides novel insights on mechanism of EEN action (2014) (0)
Optimisation of the NexteraXT library prep protocol for the production of high quality bacterial genomes for a wide range of GC contents (2016) (0)
P409 FMT induced increase in gut microbial diversity and Clostridia is associated with clinical response in patients with ulcerative colitis – results from STOP Colitis trial (2022) (0)
Staphylococcal species heterogeneity in the nasal microbiome following antibiotic prophylaxis revealed by tuf gene deep sequencing (2016) (0)
Erratum: In Their Words (2012) (0)
FindingNemo Library 1: Modified ULK001 v1 (2021) (0)
FindingNemo Extraction 3: NEB Monarch Kit v1 (2021) (0)
The CLoud Infrastructure for Microbial Bioinformatics (CLIMB) (2015) (0)
Inhibiting mycobacterial tryptophan synthase by targeting the inter-subunit interface (2017) (0)
Defining the analytical and clinical sensitivity of the ARTIC method for the detection of SARS-CoV-2 (2021) (0)
Real-time digital pathogen surveillance — the time is now (2015) (0)
Reagent and laboratory contamination can critically impact sequence-based microbiome analyses (2014) (0)
Contamination Of Reagents Can Critically Impact Sequence-Based Microbiome Studies (2015) (0)
Nanopore native RNA sequencing of a human poly(A) transcriptome (2019) (0)
Correction to: The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK (2022) (0)
FindingNemo Library 3: KrazyStarFish (KSF) v1 (2021) (0)
PORTABLE GENOMIC SURVEILLANCE OF ZIKA VIRUS IN BRAZIL (2017) (0)
Sequencing a piece of history : (2017) (0)
Reply to ‘Errors in long-read assemblies can critically affect protein prediction’ (2019) (0)
Zika virus into the United States (2017) (0)
FindingNemo Extraction 2: Phenol-free Method v1 (2021) (0)
Mobile real-time surveillance of Zika virus in Brazil (2016) (0)
FindingNemo Extraction 4: Circulomics Kit v1 (2021) (0)
Microbial diversity in the lung S 41 WS 21 . 1 The genetic basis of Pseudomonas aeruginosa pathoadaptation to the airways of cystic fibrosis patients (2014) (0)
Publisher Correction: Genomic reconstruction of the SARS CoV-2 epidemic in England (2022) (0)
A disruptive sequencer meets disruptive publishing (2015) (0)
An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar (2019) (0)
P079 Optimisation of an approach for characterisation of the cystic fibrosis lung microbiome using whole-genome metagenomics (2020) (0)
77 Whole genome sequencing of multiple isolates of the Pseudomonas aeruginosa Liverpool epidemic strain reveals transmission and geographical clustering (2015) (0)
Multiplex MinION sequencing suggests enteric adenovirus F41 genetic diversity comparable to pre-COVID-19 era (2023) (0)
FindingNemo Extraction 1: Phenol-based Method v1 (2021) (0)
A32 Genomic surveillance of Zika virus transmission in the Amazonas State, Brazil (2019) (0)
WS21.4 Use of genome sequencing to study population diversification and transmission of a Pseudomonas aeruginosa epidemic strain (2014) (0)
Edinburgh Research Explorer Identification of common deletions in the spike protein of severe acute respiratory syndrome coronavirus 2 (2020) (0)
FindingNemo Library 2: Modified RAD004 v1 (2021) (0)
Telomere-to-telomere assembly of a complete human X chromosome (2020) (0)
P136 Immunomodulatory mechanisms of FMT is associated with clinical response in UC – results from STOP-Colitis (2021) (0)
FindingNemo in OneDay: Ultra-Long ONT Library Preparation from Cell to Flowcell in One Day v1 (2021) (0)
WS2.6 Novel murine model for persistence, migration and adaptation of Pseudomonas aeruginosa in the respiratory tract (2014) (0)
Analysis updates SARS-CoV-2 genomic epidemiology in the UK (2020) (0)

This paper list is powered by the following services:

Other Resources About Nick Loman

en.wikipedia.org

What Schools Are Affiliated With Nick Loman?

Nick Loman is affiliated with the following schools:

University of Birmingham