Oliver Pybus | Academic Influence

Oliver Pybus's AcademicInfluence.com Rankings

Oliver Pybus

Biology

#4062

World Rank

#6114

Historical Rank

Evolutionary Biology

#101

World Rank

#116

Historical Rank

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Biology

Oliver Pybus's Degrees

Bachelors Biology University of Oxford

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According to Wikipedia, Oliver George Pybus is a British biologist. He is professor of evolution and infectious disease at the University of Oxford and professor of infectious diseases at the Royal Veterinary College. He is also editor-in-chief of Virus Evolution and co-Director of the Oxford Martin School Program for Pandemic Genomics. He is known for his work on the evolution and epidemiology of viruses and for helping to establish the field of phylodynamics. In recognition of his work, he has received several awards including the Scientific Medal of the Zoological Society of London in 2009, the Daiwa Adrian Prize in 2010, an ERC Consolidator Award in 2014, and the Mary Lyon Medal of the Genetics Society in 2019, and in 2022 he was elected as a Fellow of the Royal Society.

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Oliver Pybus's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

The effect of human mobility and control measures on the COVID-19 epidemic in China (2020) (2113)
Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic (2009) (2067)
Pandemic Potential of a Strain of Influenza A (H1N1): Early Findings (2009) (1932)
A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology (2020) (1898)
An investigation of transmission control measures during the first 50 days of the COVID-19 epidemic in China (2020) (1492)
Global Distribution and Prevalence of Hepatitis C Virus Genotypes (2014) (1437)
Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen) (2016) (1331)
Unifying the Epidemiological and Evolutionary Dynamics of Pathogens (2004) (1208)
Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil (2021) (942)
Zika virus in the Americas: Early epidemiological and genetic findings (2016) (900)
The genomic and epidemiological dynamics of human influenza A virus (2008) (897)
Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa (2021) (860)
Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity (2020) (819)
Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity (2020) (819)
Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England (2021) (806)
Testing macro–evolutionary models using incomplete molecular phylogenies (2000) (794)
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples (2017) (729)
SARS-CoV-2 evolution during treatment of chronic infection (2021) (647)
Rise and Fall of the Beringian Steppe Bison (2004) (647)
Rates of Molecular Evolution in RNA Viruses: A Quantitative Phylogenetic Analysis (2002) (635)
The early spread and epidemic ignition of HIV-1 in human populations (2014) (585)
Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool (2021) (537)
Evolutionary analysis of the dynamics of viral infectious disease (2009) (530)
Past and future spread of the arbovirus vectors Aedes aegypti and Aedes albopictus (2019) (511)
Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B.1.617.2) compared with alpha (B.1.1.7) variants of concern: a cohort study (2021) (488)
Recent epidemic of acute hepatitis C virus in HIV-positive men who have sex with men linked to high-risk sexual behaviours (2007) (484)
Adaptation of HIV-1 to human leukocyte antigen class I (2009) (475)
Evolution and epidemic spread of SARS-CoV-2 in Brazil (2020) (459)
Establishment and cryptic transmission of Zika virus in Brazil and the Americas (2017) (450)
The Epidemic Behavior of the Hepatitis C Virus (2001) (449)
The genesis and source of the H7N9 influenza viruses causing human infections in China (2013) (430)
Genomic characterisation of an emergent SARS- CoV-2 lineage in Manaus: preliminary findings (2021) (419)
Tracing the origin and history of the HIV-2 epidemic (2003) (413)
Correlating viral phenotypes with phylogeny: accounting for phylogenetic uncertainty. (2008) (407)
Three-quarters attack rate of SARS-CoV-2 in the Brazilian Amazon during a largely unmitigated epidemic (2020) (384)
An integrated framework for the inference of viral population history from reconstructed genealogies. (2000) (379)
Emergence and potential for spread of Chikungunya virus in Brazil (2015) (378)
Measurably evolving populations (2003) (370)
Epidemiological data from the COVID-19 outbreak, real-time case information (2020) (329)
Virus genomes reveal factors that spread and sustained the Ebola epidemic (2017) (319)
Evidence of a large, international network of HCV transmission in HIV-positive men who have sex with men. (2009) (296)
Unifying Viral Genetics and Human Transportation Data to Predict the Global Transmission Dynamics of Human Influenza H3N2 (2014) (289)
Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK (2020) (288)
Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B.1.1.7 (2021) (285)
Genomic epidemiology reveals multiple introductions of Zika virus into the United States (2017) (272)
Viral infection and transmission in a large, well-traced outbreak caused by the SARS-CoV-2 Delta variant (2021) (267)
The epidemiology and iatrogenic transmission of hepatitis C virus in Egypt: a Bayesian coalescent approach. (2003) (260)
Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China (2020) (259)
Epidemiological and clinical characteristics of the COVID-19 epidemic in Brazil (2020) (250)
Genetic analysis reveals the complex structure of HIV-1 transmission within defined risk groups. (2005) (246)
Tracking virus outbreaks in the twenty-first century (2018) (246)
HIV evolutionary dynamics within and among hosts. (2006) (241)
Long-term evolution and transmission dynamics of swine influenza A virus (2011) (238)
Emergence of SARS-CoV-2 Omicron lineages BA.4 and BA.5 in South Africa (2022) (237)
Genomic and epidemiological monitoring of yellow fever virus transmission potential (2018) (232)
A dynamic nomenclature proposal for SARS-CoV-2 to assist genomic epidemiology (2020) (227)
Dominant influence of an HLA‐B27 restricted CD8+ T cell response in mediating HCV clearance and evolution (2006) (224)
The Global Spread of Hepatitis C Virus 1a and 1b: A Phylodynamic and Phylogeographic Analysis (2009) (221)
Open access epidemiological data from the COVID-19 outbreak (2020) (219)
Discovery and analysis of the first endogenous lentivirus (2007) (217)
Measurably evolving pathogens in the genomic era. (2015) (217)
Unifying the spatial epidemiology and molecular evolution of emerging epidemics (2012) (217)
Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California (2020) (216)
Evolutionary Genetics of Human Enterovirus 71: Origin, Population Dynamics, Natural Selection, and Seasonal Periodicity of the VP1 Gene (2010) (214)
Host switch leads to emergence of Plasmodium vivax malaria in humans. (2005) (210)
Genetic History of Hepatitis C Virus in East Asia (2008) (207)
A transitional endogenous lentivirus from the genome of a basal primate and implications for lentivirus evolution (2008) (203)
Inference of viral evolutionary rates from molecular sequences. (2003) (181)
Spread of yellow fever virus outbreak in Angola and the Democratic Republic of the Congo 2015–16: a modelling study (2017) (177)
Crowding and the shape of COVID-19 epidemics (2020) (177)
Synonymous Substitution Rates Predict HIV Disease Progression as a Result of Underlying Replication Dynamics (2007) (174)
The hepatitis C virus epidemic among injecting drug users. (2005) (171)
SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse (2021) (168)
Human immunodeficiency virus: Phylogeny and the origin of HIV-1 (2001) (167)
Full-Genome Deep Sequencing and Phylogenetic Analysis of Novel Human Betacoronavirus (2013) (165)
The effect of human mobility and control measures on the COVID-19 epidemic in China (2020) (163)
Mobile real-time surveillance of Zika virus in Brazil (2016) (163)
Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020 (2020) (163)
A standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences (2009) (160)
Disease-associated XMRV sequences are consistent with laboratory contamination (2010) (154)
Clinical, immunological and virological characterization of COVID-19 patients that test re-positive for SARS-CoV-2 by RT-PCR (2020) (152)
Pacing a small cage: mutation and RNA viruses (2008) (150)
The evolution of genome compression and genomic novelty in RNA viruses. (2007) (149)
Macroevolution of Complex Retroviruses (2009) (149)
Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2. (2021) (145)
Invasion and Maintenance of Dengue Virus Type 2 and Type 4 in the Americas (2005) (143)
Tracing the HIV-1 subtype B mobility in Europe: a phylogeographic approach (2009) (141)
Genetic structure of the deep‐sea coral Lophelia pertusa in the northeast Atlantic revealed by microsatellites and internal transcribed spacer sequences (2004) (139)
Phylogenetic evidence for deleterious mutation load in RNA viruses and its contribution to viral evolution. (2007) (139)
Temporal and Spatial Dynamics of Human Immunodeficiency Virus Type 1 Circulating Recombinant Forms 08_BC and 07_BC in Asia (2008) (138)
Routes for COVID-19 importation in Brazil (2020) (138)
The Molecular Population Genetics of HIV-1 Group O (2004) (138)
The rapidly expanding CRF01_AE epidemic in China is driven by multiple lineages of HIV-1 viruses introduced in the 1990s (2013) (137)
Molecular Epidemiology and Evolution of Influenza Viruses Circulating within European Swine between 2009 and 2013 (2015) (136)
Bacterial natural transformation by highly fragmented and damaged DNA (2013) (135)
Molecular Epidemiology: HIV-1 and HCV sequences from Libyan outbreak (2006) (135)
The genomic rate of molecular adaptation of the human influenza A virus. (2011) (134)
U.S. Human Immunodeficiency Virus Type 1 Epidemic: Date of Origin, Population History, and Characterization of Early Strains (2003) (131)
The mode and tempo of hepatitis C virus evolution within and among hosts (2011) (131)
SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway (2022) (130)
GENIE: estimating demographic history from molecular phylogenies (2002) (130)
Impact of HIV on host-virus interactions during early hepatitis C virus infection. (2008) (123)
A Bayesian phylogenetic method to estimate unknown sequence ages. (2011) (123)
Phylogeography and population dynamics of dengue viruses in the Americas. (2012) (121)
Epidemiological and evolutionary considerations of SARS-CoV-2 vaccine dosing regimes (2021) (118)
Identification of Common Deletions in the Spike Protein of Severe Acute Respiratory Syndrome Coronavirus 2 (2020) (116)
Epidemic dynamics revealed in dengue evolution. (2010) (115)
Eight challenges in phylodynamic inference (2015) (114)
Phylogenetic analysis of hepatitis C virus isolates indicates a unique pattern of endemic infection in Cameroon. (2003) (112)
Urgent need for a non-discriminatory and non-stigmatizing nomenclature for monkeypox virus (2022) (111)
Evolutionary Dynamics of Local Pandemic H1N1/2009 Influenza Virus Lineages Revealed by Whole-Genome Analysis (2011) (110)
Defining HIV-1 transmission clusters based on sequence data (2017) (110)
Generation and transmission of interlineage recombinants in the SARS-CoV-2 pandemic (2021) (108)
Virus evolution and transmission in an ever more connected world (2015) (106)
The generation of influenza outbreaks by a network of host immune responses against a limited set of antigenic types (2007) (105)
Historical demography of Mullerian mimicry in the neotropical Heliconius butterflies. (2004) (103)
Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases (2016) (103)
Phylogeography and molecular epidemiology of hepatitis C virus genotype 2 in Africa. (2009) (100)
Mitogenetic structure of brown bears (Ursus arctos L.) in northeastern Europe and a new time frame for the formation of European brown bear lineages (2006) (98)
ANCIENT URBANIZATION PREDICTS GENETIC RESISTANCE TO TUBERCULOSIS (2010) (97)
Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence (2021) (96)
JC Virus Evolution and Its Association with Human Populations (2006) (96)
Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat (2018) (96)
Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance (2020) (95)
The evolutionary dynamics of endogenous retroviruses. (2005) (94)
Phylogenetic Surveillance of Viral Genetic Diversity and the Evolving Molecular Epidemiology of Human Immunodeficiency Virus Type 1 (2007) (94)
Epidemiological and evolutionary considerations of SARS-CoV-2 vaccine dosing regimes (2021) (93)
SERAPHIM: studying environmental rasters and phylogenetically informed movements (2016) (92)
Viral gene sequences reveal the variable history of hepatitis C virus infection among countries. (2004) (91)
Epidemiology of Chikungunya Virus in Bahia, Brazil, 2014-2015 (2016) (90)
Investigating the Origin and Spread of Hepatitis C Virus Genotype 5a (2006) (89)
High-Resolution Phylogenetic Analysis of Hepatitis C Virus Adaptation and Its Relationship to Disease Progression (2004) (88)
A reversal of fortunes: climate change ‘winners’ and ‘losers’ in Antarctic Peninsula penguins (2014) (85)
New inferences from tree shape: numbers of missing taxa and population growth rates. (2002) (85)
B-cell depletion reveals a role for antibodies in the control of chronic HIV-1 infection (2010) (84)
Widespread Infection with Homologues of Human Parvoviruses B19, PARV4, and Human Bocavirus of Chimpanzees and Gorillas in the Wild (2010) (83)
Comparative population dynamics of HIV-1 subtypes B and C: subtype-specific differences in patterns of epidemic growth. (2005) (83)
Exponential growth, high prevalence of SARS-CoV-2, and vaccine effectiveness associated with the Delta variant (2021) (82)
Explaining the geographic spread of emerging epidemics: a framework for comparing viral phylogenies and environmental landscape data (2016) (81)
Using human immunodeficiency virus type 1 sequences to infer historical features of the acquired immune deficiency syndrome epidemic and human immunodeficiency virus evolution. (2001) (80)
Utilizing general human movement models to predict the spread of emerging infectious diseases in resource poor settings (2019) (80)
Phylogeny, niches, and relative abundance in natural communities. (2008) (80)
Track Omicron's spread with molecular data. (2021) (79)
Importation and early local transmission of COVID-19 in Brazil, 2020 (2020) (78)
Evolutionary and molecular analysis of the emergent severe fever with thrombocytopenia syndrome virus (2013) (77)
Epidemiological and ecological determinants of Zika virus transmission in an urban setting (2017) (76)
Neutralisation of SARS-CoV-2 lineage P.1 by antibodies elicited through natural SARS-CoV-2 infection or vaccination with an inactivated SARS-CoV-2 vaccine: an immunological study (2021) (75)
Genomic Epidemiology Reconstructs the Introduction and Spread of Zika Virus in Central America and Mexico (2018) (74)
Wild waterfowl migration and domestic duck density shape the epidemiology of highly pathogenic H5N8 influenza in the Republic of Korea (2015) (74)
Investigating the endemic transmission of the hepatitis C virus. (2007) (74)
Precision epidemiology for infectious disease control (2019) (73)
Evolutionary and Transmission Dynamics of Reassortant H5N1 Influenza Virus in Indonesia (2008) (73)
Increasing airline travel may facilitate co-circulation of multiple dengue virus serotypes in Asia (2017) (73)
Phylodynamic analysis of the dissemination of HIV-1 CRF01_AE in Vietnam. (2009) (72)
Phylogeography and epidemic history of hepatitis C virus genotype 4 in Africa (2014) (71)
Increasing prevalence of HIV-1 subtype A in Greece: estimating epidemic history and origin. (2007) (71)
The impact of transmission control measures during the first 50 days of the COVID-19 epidemic in China (2020) (70)
Testing spatiotemporal hypothesis of bacterial evolution using methicillin-resistant Staphylococcus aureus ST239 genome-wide data within a bayesian framework. (2011) (70)
Analysis of the Evolutionary Forces in an Immunodominant CD8 Epitope in Hepatitis C Virus at a Population Level (2008) (70)
New trends of HCV infection in China revealed by genetic analysis of viral sequences determined from first-time volunteer blood donors (2011) (70)
Evolution of the Human Immunodeficiency Virus Envelope Gene Is Dominated by Purifying Selection (2006) (69)
The Diversity and Molecular Evolution of B-Cell Receptors during Infection (2016) (69)
Integrating Phylodynamics and Epidemiology to Estimate Transmission Diversity in Viral Epidemics (2013) (69)
Yellow Fever Virus Maintenance in Trinidad and Its Dispersal throughout the Americas (2010) (69)
Questioning the evidence for genetic recombination in the 1918 "Spanish flu" virus. (2002) (68)
Genome-wide evolutionary dynamics of influenza B viruses on a global scale (2017) (67)
Taming the BEAST—A Community Teaching Material Resource for BEAST 2 (2017) (66)
Risk factors for hepatitis C virus transmission in colonial Cameroon. (2010) (64)
Spread of Chikungunya Virus East/Central/South African Genotype in Northeast Brazil (2017) (64)
Epistatic interactions between genetic disorders of hemoglobin can explain why the sickle-cell gene is uncommon in the Mediterranean (2009) (62)
Hepacivirus cross-species transmission and the origins of the hepatitis C virus. (2016) (59)
Phylogenetic clustering of hepatitis C virus among people who inject drugs in Vancouver, Canada (2014) (59)
Genomic, epidemiological and digital surveillance of Chikungunya virus in the Brazilian Amazon (2019) (59)
Genetic diversity and models of viral evolution for the hepatitis C virus. (2002) (59)
Different Epidemic Potentials of the HIV-1B and C Subtypes (2005) (59)
Genomic reconstruction of the SARS-CoV-2 epidemic in England (2021) (59)
The Evolution and Transmission of Epidemic GII.17 Noroviruses. (2016) (58)
Evolutionary and Phylogenetic Analysis of the Hepaciviruses and Pegiviruses (2015) (57)
A Molecular-Level Account of the Antigenic Hantaviral Surface (2016) (56)
Early evaluation of the Wuhan City travel restrictions in response to the 2019 novel coronavirus outbreak (2020) (56)
Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak (2017) (56)
Origin and Evolution of the Unique Hepatitis C Virus Circulating Recombinant Form 2k/1b (2011) (55)
Genomic Insights into Zika Virus Emergence and Spread (2018) (54)
Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2 with grinch (2021) (53)
Editorial: A home for virology, ecology, epidemiology, and evolutionary biology (2015) (53)
Local Transmission of SARS-CoV-2 Lineage B.1.1.7, Brazil, December 2020 (2021) (53)
Vaccine nationalism and the dynamics and control of SARS-CoV-2 (2021) (53)
Colonial History and Contemporary Transmission Shape the Genetic Diversity of Hepatitis C Virus Genotype 2 in Amsterdam (2012) (52)
Emergence of the Asian lineage of Zika virus in Angola: an outbreak investigation (2019) (52)
Epidemiology of the Zika Virus Outbreak in the Cabo Verde Islands, West Africa (2018) (51)
Population genetic history of hepatitis C virus 1b infection in China. (2006) (50)
A phylogenetic method for detecting positive epistasis in gene sequences and its application to RNA virus evolution. (2006) (49)
HLA Footprints on Human Immunodeficiency Virus Type 1 Are Associated with Interclade Polymorphisms and Intraclade Phylogenetic Clustering (2009) (49)
Repertoire-wide phylogenetic models of B cell molecular evolution reveal evolutionary signatures of aging and vaccination (2019) (48)
Addendum: A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology (2021) (48)
Molecular epidemiology reveals the role of war in the spread of HIV in Ukraine (2018) (48)
Using Viral Gene Sequences to Compare and Explain the Heterogeneous Spatial Dynamics of Virus Epidemics (2017) (48)
Reconstructing the epidemic history of HIV-1 circulating recombinant forms CRF07_BC and CRF08_BC in East Asia: the relevance of genetic diversity and phylodynamics for vaccine strategies. (2010) (47)
Estimating reassortment rates in co-circulating Eurasian swine influenza viruses (2012) (47)
COVID-19 herd immunity in the Brazilian Amazon (2020) (47)
A Phylogenetic Codon Substitution Model for Antibody Lineages (2016) (46)
Short-Sighted Virus Evolution and a Germline Hypothesis for Chronic Viral Infections (2017) (44)
Distinct Zika Virus Lineage in Salvador, Bahia, Brazil (2016) (44)
Evolution and dispersal of St. Louis encephalitis virus in the Americas. (2009) (44)
HIV Maintains an Evolving and Dispersed Population in Multiple Tissues during Suppressive Combined Antiretroviral Therapy in Individuals with Cancer (2016) (41)
vidence of a Large , International Network of HCV Transmission in HIV-ositive Men Who Have Sex With Men (41)
Model Selection and the Molecular Clock (2006) (41)
Epidemiology of Human Parvovirus 4 Infection in Sub-Saharan Africa (2010) (41)
Evaluation of Viremia Frequencies of a Novel Human Pegivirus by Using Bioinformatic Screening and PCR (2016) (41)
Large-Scale Spatial and Temporal Genetic Diversity of Feline Calicivirus (2012) (41)
A New Evolutionary Model for Hepatitis C Virus Chronic Infection (2012) (40)
Crowding and the epidemic intensity of COVID-19 transmission (2020) (40)
A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes (2019) (40)
Phylodynamics of H5N1 avian influenza virus in Indonesia (2012) (39)
The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK (2022) (39)
The evolutionary dynamics of influenza A virus adaptation to mammalian hosts (2013) (39)
The evolutionary dynamics of influenza A virus adaptation to mammalian hosts (2013) (39)
Profibrogenic chemokines and viral evolution predict rapid progression of hepatitis C to cirrhosis (2012) (39)
Identification of a Novel Second-Generation Circulating Recombinant Form (CRF48_01B) in Malaysia: A Descendant of the Previously Identified CRF33_01B (2010) (39)
Levels of SARS-CoV-2 Lineage P.1 Neutralization by Antibodies Elicited after Natural Infection and Vaccination (2021) (39)
A Bayesian statistical analysis of human T-cell lymphotropic virus evolutionary rates. (2005) (39)
Identification of common deletions in the spike protein of SARS-CoV-2. (2020) (38)
Highly Diverse Hepatitis C Strains Detected in Sub‐Saharan Africa Have Unknown Susceptibility to Direct‐Acting Antiviral Treatments (2019) (38)
Epidemiology: Sexual transmission of HIV in Africa (2003) (38)
Tracing the origin of Brazilian HTLV-1 as determined by analysis of host and viral genes (2006) (38)
Sensitivity of SARS-CoV-2 B.1.1.7 to mRNA vaccine-elicited antibodies (2021) (37)
Hepatitis C virus infections in the Democratic Republic of Congo exhibit a cohort effect. (2013) (37)
A structural basis for antibody-mediated neutralization of Nipah virus reveals a site of vulnerability at the fusion glycoprotein apex (2019) (37)
Early evaluation of transmission control measures in response to the 2019 novel coronavirus outbreak in China (2020) (37)
Genomic and epidemiological characterisation of a dengue virus outbreak among blood donors in Brazil (2017) (37)
Complete genomes for hepatitis C virus subtypes 6f, 6i, 6j and 6m: viral genetic diversity among Thai blood donors and infected spouses. (2007) (36)
Serial interval distribution of SARS-CoV-2 infection in Brazil (2020) (36)
Evolutionary epidemiology: preparing for an age of genomic plenty (2013) (36)
Reconstruction and prediction of viral disease epidemics (2018) (35)
Explosive HIV-1 subtype B' epidemics in Asia driven by geographic and risk group founder events. (2010) (35)
Exceptional Heterogeneity in Viral Evolutionary Dynamics Characterises Chronic Hepatitis C Virus Infection (2016) (35)
Epidemiological and clinical characteristics of the early phase of the COVID-19 epidemic in Brazil (2020) (34)
Phylogenetic and phylodynamic approaches to understanding and combating the early SARS-CoV-2 pandemic (2022) (34)
A Protective Monoclonal Antibody Targets a Site of Vulnerability on the Surface of Rift Valley Fever Virus (2018) (33)
Computational and molecular analysis of conserved influenza A virus RNA secondary structures involved in infectious virion production (2016) (33)
Phylodynamics for cell biologists (2021) (32)
A Genomic Survey of SARS-CoV-2 Reveals Multiple Introductions into Northern California without a Predominant Lineage (2020) (32)
Comparative population dynamics of mosquito-borne flaviviruses. (2003) (32)
Genomic and Epidemiological Surveillance of Zika Virus in the Amazon Region. (2020) (32)
Variable epidemic histories of hepatitis C virus genotype 2 infection in West Africa and Cameroon. (2008) (32)
Full-Length Characterization of Hepatitis C Virus Subtype 3a Reveals Novel Hypervariable Regions under Positive Selection during Acute Infection (2009) (31)
Effect of Live Poultry Market Interventions on Influenza A(H7N9) Virus, Guangdong, China (2016) (31)
Estimating the date of origin of an HIV-1 circulating recombinant form. (2009) (31)
The generation of a simian adenoviral vectored HCV vaccine encoding genetically conserved gene segments to target multiple HCV genotypes (2018) (31)
Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 – 2018 (2019) (31)
Early Genomic Detection of Cosmopolitan Genotype of Dengue Virus Serotype 2, Angola, 2018 (2019) (30)
Increased positive selection pressure in persistent (SSPE) versus acute measles virus infections. (2002) (30)
High prevalence of hepatitis C virus infection and predominance of genotype 4 in rural gabon (2008) (30)
Antibody responses to avian influenza viruses in wild birds broaden with age (2016) (30)
The mid-depth method and HIV-1: a practical approach for testing hypotheses of viral epidemic history. (1999) (30)
Distinct rates and patterns of spread of the major HIV-1 subtypes in Central and East Africa (2019) (29)
Characterization of Hepatitis C Virus Recombination in Cameroon by Use of Nonspecific Next-Generation Sequencing (2015) (29)
Purifying Selection Determines the Short-Term Time Dependency of Evolutionary Rates in SARS-CoV-2 and pH1N1 Influenza (2021) (28)
Complete genomes of hepatitis C virus (HCV) subtypes 6c, 6l, 6o, 6p and 6q: completion of a full panel of genomes for HCV genotype 6. (2007) (27)
Assessing the role of live poultry trade in community-structured transmission of avian influenza in China (2020) (27)
Dynamics of immunoglobulin sequence diversity in HIV-1 infected individuals (2015) (27)
Detecting natural selection in RNA virus populations using sequence summary statistics. (2010) (27)
The recombinant origin of emerging human norovirus GII.4/2008: intra-genotypic exchange of the capsid P2 domain. (2012) (26)
Pango lineage designation and assignment using SARS-CoV-2 spike gene nucleotide sequences (2021) (25)
A naturally protective epitope of limited variability as an influenza vaccine target (2018) (25)
Do antiviral CD8+ T cells select hepatitis C virus escape mutants? Analysis in diverse epitopes targeted by human intrahepatic CD8+ T lymphocytes (2006) (25)
New findings regarding the epidemic history and population dynamics of Japan‐indigenous genotype 3 hepatitis E virus inferred by molecular evolution (2012) (25)
Parallel molecular evolution and adaptation in viruses (2019) (25)
Progress and challenges in virus genomic epidemiology. (2021) (25)
Molecular Evolution, Diversity, and Adaptation of Influenza A(H7N9) Viruses in China (2018) (24)
Robust Design for Coalescent Model Inference (2018) (24)
Viral mutation and substitution: units and levels. (2011) (24)
Complete genome sequencing and phylogenetic analysis of HCV isolates from China reveals a new subtype, designated 6u (2008) (24)
Transmission dynamics of re-emerging rabies in domestic dogs of rural China (2018) (24)
Phylogenetic analysis of migration, differentiation, and class switching in B cells (2020) (23)
An expanded taxonomy of hepatitis C virus genotype 6: Characterization of 22 new full-length viral genomes (2015) (23)
Genome Sequence of a Candidate World Health Organization Reference Strain of Zika Virus for Nucleic Acid Testing (2016) (23)
Systematic phylogenetic analysis of influenza A virus reveals many novel mosaic genome segments. (2013) (22)
Zika virus complete genome from Salvador, Bahia, Brazil. (2016) (22)
Where do all the subtypes go? Temporal dynamics of H8–H12 influenza A viruses in waterfowl (2018) (22)
Emergence and widespread circulation of a recombinant SARS-CoV-2 lineage in North America (2021) (21)
Unexpected Maintenance of Hepatitis C Viral Diversity following Liver Transplantation (2012) (21)
Fatal Outcome of Chikungunya Virus Infection in Brazil (2020) (21)
Human Parvovirus 4 Infection, Cameroon (2012) (21)
Evolutionary analysis of hepatitis C virus gene sequences from 1953 (2013) (20)
Transmission of hepatitis C virus infection among younger and older people who inject drugs in Vancouver, Canada. (2016) (20)
The seroprevalence of hepatitis C virus (HCV) among 559,890 first‐time volunteer blood donors in China reflects regional heterogeneity in HCV prevalence and changes in blood donor recruitment models (2010) (20)
Intercontinental Dispersal of HIV-1 Subtype B Associated with Transmission among Men Who Have Sex with Men in Japan (2014) (20)
Characterization of full-length hepatitis C virus sequences for subtypes 1e, 1h and 1l, and a novel variant revealed Cameroon as an area in origin for genotype 1. (2013) (19)
Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission (2021) (19)
Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework (2020) (19)
Measuring the temporal structure in serially sampled phylogenies (2011) (19)
Genomic detection of a virus lineage replacement event of dengue virus serotype 2 in Brazil, 2019 (2020) (19)
Chronology of the HIV-1 CRF07_BC expansion in East Asia (2008) (18)
Cross-border spread, lineage displacement and evolutionary rate estimation of rabies virus in Yunnan Province, China (2017) (18)
Parallel evolution in the emergence of highly pathogenic avian influenza A viruses (2018) (18)
The virus whose family expanded (2013) (18)
Evolution and Transmission of Respiratory Syncytial Group A (RSV-A) Viruses in Guangdong, China 2008–2015 (2016) (18)
Epidemic History and Iatrogenic Transmission of Blood-borne Viruses in Mid-20th Century Kinshasa. (2016) (18)
Evolution and Diversity of the Human Leukocyte Antigen(HLA) (2015) (17)
Tracing the Impact of Public Health Interventions on HIV-1 Transmission in Portugal Using Molecular Epidemiology (2019) (17)
Characterization of Hepatitis C Virus (HCV) Envelope Diversification from Acute to Chronic Infection within a Sexually Transmitted HCV Cluster by Using Single-Molecule, Real-Time Sequencing (2016) (17)
Occurrence and Reassortment of Avian Influenza A (H7N9) Viruses Derived from Coinfected Birds in China (2014) (17)
Natural selection and adaptation of molecular sequences (2009) (17)
Identification of a common deletion in the spike protein of SARS-CoV-2 (2020) (17)
Eight novel hepatitis C virus genomes reveal the changing taxonomic structure of genotype 6 (2013) (16)
Possible sources and spreading routes of highly pathogenic avian influenza virus subtype H5N1 infections in poultry and wild birds in Central Europe in 2007 inferred through likelihood analyses. (2010) (16)
Evolutionary Dynamics of Oropouche Virus in South America (2019) (16)
Role of HIV-specific CD8+ T cells in pediatric HIV cure strategies after widespread early viral escape (2017) (16)
Contact between bird species of different lifespans can promote the emergence of highly pathogenic avian influenza strains (2014) (16)
Publisher Correction: SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway (2022) (15)
Monitoring key epidemiological parameters of SARS-CoV-2 transmission (2021) (15)
The ecology and age structure of a highly pathogenic avian influenza virus outbreak in wild mute swans (2012) (15)
Viral phylogeny in court: the unusual case of the Valencian anesthetist (2013) (15)
Dynamics of conflict during the Ebola outbreak in the Democratic Republic of the Congo 2018–2019 (2020) (15)
Relax, Keep Walking — A Practical Guide to Continuous Phylogeographic Inference with BEAST (2021) (14)
Phylodynamics Helps to Evaluate the Impact of an HIV Prevention Intervention (2020) (14)
Molecular archaeoparasitology identifies cultural changes in the Medieval Hanseatic trading centre of Lübeck (2018) (14)
Reducing HIV infection in people who inject drugs is impossible without targeting recently-infected subjects (2016) (14)
Viral evolution explains the associations among hepatitis C virus genotype, clinical outcomes, and human genetic variation. (2013) (13)
Westward Spread of Highly Pathogenic Avian Influenza A(H7N9) Virus among Humans, China (2018) (13)
Metagenomic Next-Generation Sequencing of the 2014 Ebola Virus Disease Outbreak in the Democratic Republic of the Congo (2019) (13)
Comparative micro-epidemiology of pathogenic avian influenza virus outbreaks in a wild bird population (2019) (13)
A mechanistic evolutionary model explains the time-dependent pattern of substitution rates in viruses (2021) (13)
Optimal Point Process Filtering and Estimation of the Coalescent Process (2015) (13)
Venue-Based Networks May Underpin HCV Transmissions amongst HIV-Infected Gay and Bisexual Men (2016) (12)
Evidence of a large international HCV transmission network in HIV-positive men who have sex with men (MSM) (2009) (12)
Exact Bayesian inference for phylogenetic birth‐death models (2018) (12)
Context-specific emergence and growth of the SARS-CoV-2 Delta variant (2022) (12)
Population Genetics of HIV: Parameter Estimation Using Genealogy-based Methods (2002) (11)
Coalescent Inference Using Serially Sampled, High-Throughput Sequencing Data from Intrahost HIV Infection (2015) (11)
The seasonal flight of influenza: a unified framework for spatiotemporal hypothesis testing (2012) (11)
Generation of Neutralizing Antibodies and Divergence of SIVmac239 in Cynomolgus Macaques Following Short-Term Early Antiretroviral Therapy (2010) (11)
Emergence of the Zika virus Asian lineage in Angola (2019) (11)
Transmission of hepatitis C virus in HIV‐positive and PrEP‐using MSM in England (2020) (11)
A Molecular-Level Account of the Antigenic Hantaviral Surface (2016) (10)
Towards an understanding of the avian virome (2020) (10)
Genetic diversity and phenotypic associations of feline caliciviruses from cats in Switzerland. (2016) (10)
Rapid HIV disease progression following superinfection in an HLA-B*27:05/B*57:01-positive transmission recipient (2018) (10)
Publisher Correction: Past and future spread of the arbovirus vectors Aedes aegypti and Aedes albopictus (2019) (9)
Genomic epidemiology of SARS-CoV-2 transmission lineages in Ecuador (2021) (9)
Virus genomes reveal the factors that spread and sustained the West African Ebola epidemic (2016) (9)
Human B cell lineages associated with germinal centers following influenza vaccination are measurably evolving (2021) (9)
Are Skyline Plot-Based Demographic Estimates Overly Dependent on Smoothing Prior Assumptions? (2020) (8)
The Effect of RNA Substitution Models on Viroid and RNA Virus Phylogenies (2018) (8)
High-Resolution Evolutionary Analysis of Within-Host Hepatitis C Virus Infection (2018) (8)
Assessing the impact of COVID-19 border restrictions on dengue transmission in Yunnan Province, China: an observational epidemiological and phylogenetic analysis (2021) (8)
“Kankasha” in Kassala: A prospective observational cohort study of the clinical characteristics, epidemiology, genetic origin, and chronic impact of the 2018 epidemic of Chikungunya virus infection in Kassala, Sudan (2020) (8)
The multifurcating skyline plot (2018) (8)
Infection Frequency of Hepatitis C Virus and IL28B Haplotypes in Papua New Guinea, Fiji, and Kiribati (2013) (8)
Molecular detection and genomic characterization of diverse hepaciviruses in African rodents (2021) (7)
Discovery of a polyomavirus in European badgers (Meles meles) and the evolution of host range in the family Polyomaviridae (2015) (7)
Re-emergent hepatitis C viremia after apparent clearance in HIV-positive men who have sex with men: reinfection or late recurrence? (2010) (7)
Reconstruction of the Genetic History and the Current Spread of HIV-1 Subtype A in Germany (2019) (7)
Effects of neutralizing antibodies on escape from CD8+ T-cell responses in HIV-1 infection (2015) (7)
Oropouche virus cases identified in Ecuador using an optimised qRT-PCR informed by metagenomic sequencing (2019) (7)
Do antiviral CD 8 + T cells select hepatitis C virus escape mutants ? Analysis in diverse epitopes targeted by human intrahepatic CD 8 + T lymphocytes (6)
Evidence of a large, international network of international hepatitis C virus transmission in HIV-positive men who have sex with men (2014) (6)
Mapping environmental suitability of Haemagogus and Sabethes spp. mosquitoes to understand sylvatic transmission risk of yellow fever virus in Brazil (2022) (6)
Conserved secondary structures predicted within the 5′ packaging signal region of influenza A virus PB2 segment (2018) (6)
Faster Adaptation in Smaller Populations: Counterintuitive Evolution of HIV during Childhood Infection (2016) (6)
Total infectomes of 162 SARS-CoV-2 cases using meta-transcriptomic sequencing (2020) (6)
The relationship between rising temperatures and malaria incidence in Hainan, China, from 1984 to 2010: a longitudinal cohort study. (2022) (6)
Genomic epidemiology of SARS-CoV-2 transmission lineages in Ecuador (2021) (6)
Discovery of a polyomavirus in European badgers (Meles meles) and the evolution of host range in the family Polyomaviridae. (2015) (5)
Evolutionary Analyses of Base-Pairing Interactions in DNA and RNA Secondary Structures (2019) (5)
First Complete Genome Sequences of Zika Virus Isolated from Febrile Patient Sera in Ecuador (2017) (5)
Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission (2022) (5)
The Changing Epidemiological Profile of HIV-1 Subtype B Epidemic in Ukraine (2019) (5)
Multiple introductions of Zika virus into the United States revealed through genomic epidemiology (2017) (5)
Genomic surveillance of avian-origin influenza A viruses causing human disease (2018) (5)
Full-Length Characterization of Hepatitis C Virus Subtype 3a Reveals Novel Hypervariable Regions under Positive Selection during Acute Infection (2010) (4)
Zika virus outbreak in Cabo Verde Islands, West Africa: early epidemiological findings (2017) (4)
A computationally tractable birth-death model that combines phylogenetic and epidemiological data (2020) (4)
Explorer Unifying Viral Genetics and Human Transportation Data to Predict the Global Transmission Dynamics of Human Influenza H 3 N 2 (2017) (4)
Reverse immunodynamics: a new method for identifying targets of protective immunity (2017) (4)
Discovery of a persistent Zika virus lineage in Bahia, Brazil (2016) (4)
Evidence for sexual transmission of HCV in recent epidemic in HIV-infected men in Southeast England. (2005) (4)
The global distribution and prevalence of HCV genotypes (2014) (4)
Global prevalence and phylogeny of hepatitis B virus (HBV) drug and vaccine resistance mutations (2020) (4)
EVOLUTION OF THE HIV-1 ENVELOPE GENE IS DOMINATED BY PURIFYING SELECTION (2006) (4)
Human B cell lineages engaged by germinal centers following influenza vaccination are measurably evolving (2021) (3)
Identification of evolutionary trajectories shared across human betacoronaviruses (2021) (3)
Corrigendum to “Explosive HIV-1 subtype B' epidemics in Asia driven by geographic and risk group founder events” [Virology 402 (2010) 223–227] (2010) (3)
Emergence and persistence of the Chikungunya virus East-Central-South-African genotype in Northeast Brazil (2017) (3)
Malaria elimination on Hainan Island despite climate change (2022) (3)
Molecular and genomic investigation of an urban outbreak of dengue virus serotype 2 in Angola, 2017–2019 (2022) (3)
A review of models applied to the geographic spread of Zika virus (2021) (3)
Epidemiological data from the COVID-19 outbreak, real-time case information (2020) (3)
Hepatitis C virus genotype 4 in England: Diversity and demographic associations (2015) (3)
HIV-1 epidemic in Russia: an evolutionary epidemiology analysis (2014) (3)
Comparing the evolutionary dynamics of predominant SARS-CoV-2 virus lineages co-circulating in Mexico (2023) (3)
Paleovirology reveals the macroevolution of complex retroviruses (2009) (3)
Phylogeographic and phylodynamic approaches to epidemiological hypothesis testing (2020) (3)
Prisoner of War dynamics explains the time-dependent pattern of substitution rates in viruses (2021) (3)
Early identification of dengue virus lineage replacement in Brazil using portable genomic surveillance (2019) (3)
Author Correction: Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance (2020) (2)
Publisher Correction: Parallel evolution in the emergence of highly pathogenic avian influenza A viruses (2020) (2)
An integrated framework for the joint inference of demographic history and sampling intensity from genealogies or genetic sequences (2019) (2)
Molecular evolution, diversity and adaptation of H7N9 influenza A viruses in China (2017) (2)
Pango lineage designation and assignment using SARS-CoV-2 spike gene nucleotide sequences (2022) (2)
Publisher Correction: Past and future spread of the arbovirus vectors Aedes aegypti and Aedes albopictus (2019) (2)
Evolutionary Dynamics of Local Pandemic H1N1/09 Influenza Lineages Revealed 1 (2011) (1)
Using human immunode ciency virus type 1 sequences to infer historical features of the acquired immune de ciency syndrome epidemic and human immunode ciency virus evolution (2004) (1)
Context-specific emergence and growth of the SARS-CoV-2 Delta variant (2021) (1)
Seasonal dynamics of the wild rodent faecal virome (2022) (1)
Code for Vaccine nationalism and the dynamics and control of SARS-CoV-2 (2021) (1)
Identification of an epitope of limited variability under strong immune selection in the haemagglutinin head domain of H1N1 influenza (2017) (1)
Virus genomics and evolution: the transformative effect of new technologies and multidisciplinary collaboration on virus research and outbreak management (2016) (1)
Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance (2020) (1)
HLA FOOTPRINTS ON HIV-1 ARE ASSOCIATED WITH 1 (2009) (1)
A potent neutralizing epitope of limited variability in the head domain of haemagglutinin as a novel influenza vaccine target (2018) (1)
Past and future spread of the arbovirus vectors Aedes aegypti and Aedes albopictus (2019) (1)
The evolutionary dynamics of Oropouche Virus (OROV) in South America (2019) (1)
Chikungunya virus outbreak in the Amazon region: replacement of the Asian genotype by an ECSA lineage? (2018) (1)
A60 Revealing the evolution of virulence in RNA viruses (2019) (1)
NEW TRENDS OF HCV INFECTION IN CHINA REVEALED BY GENETIC ANALYSIS OF FIRST-TIME VOLUNTEER BLOOD DONORS (2009) (1)
The adaptation of chronic viral infections to human genetic diversity (2011) (1)
Partial immunity and SARS-CoV-2 mutations—Response (2021) (1)
PREDICTING THE GEOGRAPHIC SPREAD OF THE 2014-2016 WEST AFRICA EBOLA VIRUS DISEASE OUTBREAK (2017) (1)
Implementation of genomic surveillance of SARS-CoV-2 in the Caribbean: Lessons learned for sustainability in resource-limited settings (2023) (1)
Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning (2022) (1)
Molecular Epidemiology of H5N1 Avian Influenza Virus: Correlations between Antigenic Drift, Geographical Migration and Expansion of Viral Diversity (2008) (1)
Form 2 k / 1 b Hepatitis C Virus Circulating Recombinant Origin and Evolution of the Unique (2012) (1)
Tracking virus outbreaks in the 21st century 1 (2018) (1)
An epitope of limited variability as a novel influenza vaccine target (2017) (1)
Establishment and early spread of the AIDS pandemic (2014) (1)
Crowding and the shape of COVID-19 epidemics (2020) (1)
Understanding Sabiá virus infections (Brazilian mammarenavirus). (2022) (1)
Investigation of hospital discharge cases and SARS-CoV-2 introduction into Lothian care homes (2023) (1)
Faria populations The early spread and epidemic ignition of HIV-1 in human (2014) (1)
Viral phylogeny in court: the unusual case of the Valencian anesthetist (2013) (1)
OP-EMPH140033 1..1 (2015) (0)
O14.3 How war and risky sexual behaviours shape the ukrainian hiv epidemic: a phylogeographic analysis (2017) (0)
Explaining the geographic spread of emerging epidemics: a framework for comparing viral phylogenies and environmental landscape data (2016) (0)
econstructing the epidemic history of HIV-1 circulating recombinant forms RF 07 BC and CRF 08 BC in East Asia : The relevance of genetic diversity and hylodynamics for vaccine strategies (2010) (0)
Erratum: Re-emergent hepatitis C viremia after apparent clearance in HIV-positive men who have sex with men: Reinfection or late recurrence (Journal of Acquired Immune Deficiency Syndromes (2010) 53 (547-550)) (2010) (0)
Hepatitis C virus network dynamics among people who inject drugs in Vancouver, Canada (2014) (0)
Epidemiological and clinical characteristics of the COVID-19 epidemic in Brazil 1 2 (2020) (0)
Nature Microbiology Review (2018) (0)
Coinfected Birds in China Influenza A ( H 7 N 9 ) Viruses Derived from Occurrence and Reassortment of Avian (2014) (0)
Transmission of hepatitis C virus in HIV-positive and PrEP-using MSM in England Running title: HCV in HIV-positive and PrEP-using MSM (2020) (0)
Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak (2018) (0)
Evolutionary features of a prolific subtype of avian influenza A virus in European waterfowl (2021) (0)
Norwegian Research Council Evaluations of Botany, Zoology and Ecology-related disciplines. Panel 1 - Evolutionary biology, ethology, marine biology, limnology, plant physiology, systematics and agriculture sciences (2011) (0)
Publisher Correction: Past and future spread of the arbovirus vectors Aedes aegypti and Aedes albopictus (2019) (0)
Viremia Frequencies of a Novel Human Pegivirus Evaluation by using Bioinformatic Screening and PCR (2016) (0)
P1191 HETEROGENEOUS EVOLUTIONARY DYNAMICS OF CHRONIC HEPATITIS-C INFECTION PREDICT LONG-TERM PERSISTENCE OF VIRUS THROUGH TREATMENT (2014) (0)
ADVANCES IN PARASITOLOGY, VOL 54 (2003) (0)
Impact of host age on viral and bacterial communities in a waterbird population (2022) (0)
Virus genomics and evolution: the transformative effect of new technologies and multidisciplinary collaboration on virus research and outbreak management (2016) (0)
Computational molecular of conserved virus RNA (2016) (0)
nCoV-2019 origin time estimates Using 20 genomes (2020) (0)
Investigating the origin of the HTLV-1 in Brazil using host and virus genetic data (2005) (0)
Global disparities in SARS-CoV-2 genomic surveillance (2022) (0)
PORTABLE GENOMIC SURVEILLANCE OF ZIKA VIRUS IN BRAZIL (2017) (0)
Zika virus into the United States (2017) (0)
Sub-tomogram averaging of Tula virus glycoprotein spike (2016) (0)
Population Genetic Modeling of Viruses (2016) (0)
Statistical analysis of natural selection in RNA virus populations (2010) (0)
Evolutionary analysis of base-pairing interactions in DNA and RNA secondary structures (2018) (0)
An automated method for the identification of Dengue, Zika, Yellow Fever and Chikungunya virus species and genotypes (2017) (0)
Vulnerabilities in coronavirus glycan shields despite extensive glycosylation (2020) (0)
Faculty Opinions recommendation of Metabolic rate does not calibrate the molecular clock. (2007) (0)
Reverse immunodynamics: a new method for identifying targets of protective immunity (2019) (0)
Correction to: The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK (2022) (0)
Mobile real-time surveillance of Zika virus in Brazil (2016) (0)
HIV-1 infection (2016) (0)
HLA Footprints on Human Immunodeficiency Virus Type 1 Are Associated with Interclade Polymorphisms and Intraclade Phylogenetic Clustering (2011) (0)
Analysis of the HCV genotype 5a molecular epidemiology in Belgium using a Bayesian approach (2005) (0)
Publisher Correction: Genomic reconstruction of the SARS CoV-2 epidemic in England (2022) (0)
Publisher Correction: Monitoring key epidemiological parameters of SARS-CoV-2 transmission (2022) (0)
HLA Footprints in HIV-1 Drive Phylogenetic Clustering and Inter-Clade Variation (2008) (0)
The evolution of viral diversity (2012) (0)
Optimal Point Process Filtering for Birth-Death Model Estimation (2017) (0)
Author Correction: Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance (2020) (0)
Limited diffusion of genome constellations and pervasive reassortment arefeatures of long-term circulation of H4N6 influenza A in European waterfowl (2015) (0)
Genomic and epidemiological characterisation of a dengue virus outbreak among blood donors in Brazil (2017) (0)
Spatial scales of COVID-19 transmission in Mexico (preprint) (2023) (0)
Modelling the Decay of Hotspot Motifs in Broadly Neutralizing Antibody Lineages (2016) (0)
Publisher Correction: Past and future spread of the arbovirus vectors Aedes aegypti and Aedes albopictus (2019) (0)
The evolution of gene overlap in RNA viruses (2008) (0)
Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat (2018) (0)
The evolutionary epidemiology of the hepatitis C virus (2015) (0)
CONCEPTS & SYNTHESIS EMPHASIZING NEW IDEAS TO STIMULATE RESEARCH IN ECOLOGY (2007) (0)
Comparison of human T-cell lymphotropic virus introductions and evolutionary rates using Bayesian methods (2005) (0)
PRAXIS MAKES PERFECT? (2000) (0)
Pathogens Unifying the Epidemiological and Evolutionary Dynamics of (2011) (0)
Publisher Correction: Monitoring key epidemiological parameters of SARS-CoV-2 transmission (2022) (0)
A naturally protective epitope of limited variability as an influenza vaccine target (2018) (0)
Cross-border spread, lineage displacement and evolutionary rate estimation of rabies virus in Yunnan Province, China (2017) (0)
Investigating the origin and nature of epidemics in the history of HIV-1 (2007) (0)
Bidirectional Movement of Emerging H5N8 Avian Influenza Viruses Between Europe and Asia via Migratory Birds Since Early 2020 (2023) (0)
Genomic surveillance of avian-origin influenza A viruses causing human disease (2018) (0)
Precision epidemiology for infectious disease control (2019) (0)
Faculty Opinions recommendation of Detecting non-Brownian trait evolution in adaptive radiations. (2007) (0)
Edinburgh Research Explorer Human parvovirus 4 infection, Cameroon (2012) (0)
Author Correction: Malaria elimination on Hainan Island despite climate change (2022) (0)
Tracking virus outbreaks in the twenty-first century (2018) (0)
The multifurcating skyline plot (2019) (0)
A32 Genomic surveillance of Zika virus transmission in the Amazonas State, Brazil (2019) (0)
Reconstruction and prediction of viral disease epidemics" in its current form for publication in Epidemiology and Infection (2018) (0)
A comparative analysis of the HCV genotype 5a molecular epidemiology in Belgium and South Africa (2006) (0)
SARS-CoV-2 evolution during treatment of chronic infection (2021) (0)
Rapid HIV disease progression following superinfection in an HLA-B*27:05/B*57:01-positive transmission recipient (2018) (0)
Author response: Human B cell lineages associated with germinal centers following influenza vaccination are measurably evolving (2021) (0)
Early Genomic Detection of an Outbreak of Dengue Virus 2 Cosmopolitan Genotype in Angola, 2018 (2018) (0)
The emergence and early dissemination of pandemic Human Immunodeficiency virus type 1 (2012) (0)
Correction (2021) (0)
Viral infection and transmission in a large, well-traced outbreak caused by the SARS-CoV-2 Delta variant (2022) (0)
Revealed by Whole-Genome Analysis H1N1/2009 Influenza Virus Lineages Evolutionary Dynamics of Local Pandemic (2012) (0)
Analysis of HCV in South East Asia (2007) (0)
Epidemiological and clinical characteristics of the COVID-19 1 epidemic in Brazil 2 (2020) (0)
Edinburgh Research Explorer Identification of common deletions in the spike protein of severe acute respiratory syndrome coronavirus 2 (2020) (0)
A10 The evolution and molecular epidemiology of epidemic GII.17 noroviruses (2017) (0)
A38 Genomic epidemiology quantifies gaps in Aedes-borne virus transmission in the Americas (2019) (0)
Faculty Opinions recommendation of Founder effects in the assessment of HIV polymorphisms and HLA allele associations. (2007) (0)
Explorer Human parvovirus 4 infection , Cameroon (2017) (0)
The genetic diversity and phenotypic associations of feline 1 caliciviruses from cats in Switzerland 2 (2017) (0)
Bayesian phylogeographic reconstruction of HIV-1 diffusion dynamics (2009) (0)
Superspreading and transmission variation in HCV epidemics (2012) (0)
Methicillin resistant Staphylococcus aureus ST239 2 3 (2010) (0)
Sequencing Methods Developed for Hepatitis C Identifies a New Virus, Human Hepegivirus 1, in Patients with Advanced Cirrhosis (2016) (0)
Molecular evolution, diversity and adaptation of H7N9 viruses in China during 2013-2017 (2018) (0)
Analysis of the Evolutionary Forces in an Immunodominant CD8 Epitope in Hepatitis C Virus at a Population Level (2011) (0)
Crystal Structure of Puumala virus Gn glycoprotein ectodomain (2016) (0)

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