Oliver Stegle
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(Suggest an Edit or Addition)Oliver Stegle's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- An integrated map of structural variation in 2,504 human genomes (2015) (1800)
- Transcriptome and genome sequencing uncovers functional variation in humans (2013) (1758)
- The Human Cell Atlas (2017) (1285)
- Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells (2015) (1008)
- Deep learning for computational biology (2016) (981)
- Computational and analytical challenges in single-cell transcriptomics (2015) (958)
- Whole-genome sequencing of multiple Arabidopsis thaliana populations (2011) (930)
- Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment (2020) (894)
- Single-Cell Genome-Wide Bisulfite Sequencing for Assessing Epigenetic Heterogeneity (2014) (840)
- A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control consortium (2014) (799)
- Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters (2016) (747)
- Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses (2012) (688)
- Spontaneous epigenetic variation in the Arabidopsis thaliana methylome (2011) (642)
- Multiple reference genomes and transcriptomes for Arabidopsis thaliana (2011) (621)
- Eleven grand challenges in single-cell data science (2020) (553)
- Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity (2015) (531)
- Genetic Drivers of Epigenetic and Transcriptional Variation in Human Immune Cells (2016) (475)
- Multi‐Omics Factor Analysis—a framework for unsupervised integration of multi‐omics data sets (2018) (473)
- Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients (2018) (471)
- Patterns of Cis Regulatory Variation in Diverse Human Populations (2012) (470)
- Unraveling the polygenic architecture of complex traits using blood eQTL metaanalysis (2018) (451)
- scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells (2017) (436)
- A Bayesian Framework to Account for Complex Non-Genetic Factors in Gene Expression Levels Greatly Increases Power in eQTL Studies (2010) (428)
- Common genetic variation drives molecular heterogeneity in human iPSCs (2017) (397)
- DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation (2015) (381)
- Patterns of somatic structural variation in human cancer genomes (2020) (377)
- DeepCpG: accurate prediction of single-cell DNA methylation states using deep learning (2017) (349)
- Computational assignment of cell-cycle stage from single-cell transcriptome data. (2015) (329)
- Open Targets: a platform for therapeutic target identification and validation (2016) (321)
- Single-cell epigenomics: Recording the past and predicting the future (2017) (295)
- Arabidopsis Defense against Botrytis cinerea: Chronology and Regulation Deciphered by High-Resolution Temporal Transcriptomic Analysis[C][W][OA] (2012) (294)
- Vitamin A-Retinoic Acid Signaling Regulates Hematopoietic Stem Cell Dormancy (2017) (291)
- Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression (2021) (284)
- Expression Atlas: gene and protein expression across multiple studies and organisms (2017) (282)
- SpatialDE: identification of spatially variable genes (2017) (277)
- Multi-tissue DNA methylation age predictor in mouse (2017) (270)
- scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation (2019) (255)
- The Polygenic and Monogenic Basis of Blood Traits and Diseases (2020) (242)
- Haplotype-resolved diverse human genomes and integrated analysis of structural variation (2021) (239)
- MOFA+: a statistical framework for comprehensive integration of multi-modal single-cell data (2020) (229)
- Single-cell RNA-seq and computational analysis using temporal mixture modeling resolves TH1/TFH fate bifurcation in malaria (2017) (229)
- Multi-omics profiling of mouse gastrulation at single cell resolution (2019) (224)
- Genomic basis for RNA alterations in cancer (2020) (221)
- Longitudinal Multi-omics Analyses Identify Responses of Megakaryocytes, Erythroid Cells, and Plasmablasts as Hallmarks of Severe COVID-19 (2020) (205)
- Gaussian Process Robust Regression for Noisy Heart Rate Data (2008) (198)
- Comprehensive molecular characterization of mitochondrial genomes in human cancers (2017) (197)
- DNA Methylation and Transcription Patterns in Intestinal Epithelial Cells From Pediatric Patients With Inflammatory Bowel Diseases Differentiate Disease Subtypes and Associate With Outcome (2017) (168)
- Benchmarking single-cell RNA-sequencing protocols for cell atlas projects (2020) (147)
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression (2019) (146)
- Joint Modelling of Confounding Factors and Prominent Genetic Regulators Provides Increased Accuracy in Genetical Genomics Studies (2012) (138)
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data (2020) (133)
- Century-scale Methylome Stability in a Recently Diverged Arabidopsis thaliana Lineage (2014) (131)
- Cell2location maps fine-grained cell types in spatial transcriptomics (2022) (129)
- Computational principles and challenges in single-cell data integration (2021) (127)
- GWAS for executive function and processing speed suggests involvement of the CADM2 gene (2016) (125)
- Benchmarking single-cell RNA-sequencing protocols for cell atlas projects (2019) (120)
- Disease severity-specific neutrophil signatures in blood transcriptomes stratify COVID-19 patients (2020) (119)
- Probabilistic latent variable models for distinguishing between cause and effect (2010) (119)
- Estimation of Free-Living Energy Expenditure by Heart Rate and Movement Sensing: A Doubly-Labelled Water Study (2015) (117)
- Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits (2017) (110)
- LIMIX: genetic analysis of multiple traits (2014) (107)
- A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series (2009) (106)
- Modeling Cell-Cell Interactions from Spatial Molecular Data with Spatial Variance Component Analysis (2018) (105)
- DNA methylation defines regional identity of human intestinal epithelial organoids and undergoes dynamic changes during development (2017) (104)
- A Lasso multi-marker mixed model for association mapping with population structure correction (2012) (104)
- The Kipoi repository accelerates community exchange and reuse of predictive models for genomics (2019) (103)
- Predicting and understanding the stability of G-quadruplexes (2009) (102)
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation (2020) (101)
- Vireo: Bayesian demultiplexing of pooled single-cell RNA-seq data without genotype reference (2019) (101)
- A Pan-cancer Transcriptome Analysis Reveals Pervasive Regulation through Alternative Promoters (2019) (96)
- The single-cell eQTLGen consortium (2020) (95)
- f-scLVM: scalable and versatile factor analysis for single-cell RNA-seq (2017) (94)
- A linear mixed-model approach to study multivariate gene–environment interactions (2018) (90)
- Efficient set tests for the genetic analysis of correlated traits (2015) (88)
- Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types (2016) (88)
- LifeTime and improving European healthcare through cell-based interceptive medicine (2020) (87)
- Early IFN-α signatures and persistent dysfunction are distinguishing features of NK cells in severe COVID-19 (2021) (86)
- Limited Contribution of DNA Methylation Variation to Expression Regulation in Arabidopsis thaliana (2016) (86)
- Efficient inference in matrix-variate Gaussian models with \iid observation noise (2011) (85)
- A random forest approach to capture genetic effects in the presence of population structure (2015) (81)
- Genomic Determinants of Protein Abundance Variation in Colorectal Cancer Cells (2016) (81)
- easyGWAS: A Cloud-Based Platform for Comparing the Results of Genome-Wide Association Studies[OPEN] (2016) (77)
- Joint Genetic Analysis of Gene Expression Data with Inferred Cellular Phenotypes (2011) (76)
- Effects of the COVID-19 pandemic on life scientists (2020) (76)
- Genome-wide Studies of Verbal Declarative Memory in Nondemented Older People: The Cohorts for Heart and Aging Research in Genomic Epidemiology Consortium (2015) (75)
- It is all in the noise: Efficient multi-task Gaussian process inference with structured residuals (2013) (74)
- Genetic Variation in the Social Environment Contributes to Health and Disease (2017) (70)
- Genotype-Environment Interactions Reveal Causal Pathways That Mediate Genetic Effects on Phenotype (2013) (68)
- Accurate prediction of single-cell DNA methylation states using deep learning (2016) (68)
- Genome-Scale Oscillations in DNA Methylation during Exit from Pluripotency (2018) (67)
- A Toolbox for Predicting G-Quadruplex Formation and Stability (2010) (67)
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (2020) (65)
- Extensive cis-Regulatory Variation Robust to Environmental Perturbation in Arabidopsis[W] (2014) (63)
- Promoter shape varies across populations and affects promoter evolution and expression noise (2017) (63)
- The Organoid Cell Atlas (2020) (62)
- Genome-wide mapping of genetic determinants influencing DNA methylation and gene expression in human hippocampus (2017) (61)
- Combined single-cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneity (2018) (57)
- Screening for genes that accelerate the epigenetic aging clock in humans reveals a role for the H3K36 methyltransferase NSD1 (2019) (54)
- Genetic variants regulating expression levels and isoform diversity during embryogenesis (2016) (51)
- Properties of structural variants and short tandem repeats associated with gene expression and complex traits (2020) (50)
- Gaussian process product models for nonparametric nonstationarity (2008) (48)
- Platelet function is modified by common sequence variation in megakaryocyte super enhancers (2017) (46)
- Warped linear mixed models for the genetic analysis of transformed phenotypes (2014) (46)
- A Palaeolithic‐type diet causes strong tissue‐specific effects on ectopic fat deposition in obese postmenopausal women (2013) (45)
- A high-content platform to characterise human induced pluripotent stem cell lines (2016) (44)
- Identifying temporal and spatial patterns of variation from multimodal data using MEFISTO (2020) (44)
- Accurate detection of differential RNA processing (2013) (44)
- Sex differences in oncogenic mutational processes (2019) (41)
- Identification of rare and common regulatory variants in pluripotent cells using population-scale transcriptomics (2021) (37)
- Population-scale proteome variation in human induced pluripotent stem cells (2018) (36)
- A Single-Cell Transcriptomics CRISPR-Activation Screen Identifies Epigenetic Regulators of the Zygotic Genome Activation Program (2020) (35)
- Accounting for Non-genetic Factors Improves the Power of eQTL Studies (2008) (34)
- High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations (2020) (34)
- Germline determinants of the somatic mutation landscape in 2,642 cancer genomes (2017) (33)
- The germline genetic component of drug sensitivity in cancer cell lines (2018) (33)
- Structural rearrangements generate cell-specific, gene-independent CRISPR-Cas9 loss of fitness effects (2019) (32)
- Kipoi: accelerating the community exchange and reuse of predictive models for genomics (2018) (32)
- Cardelino: computational integration of somatic clonal substructure and single-cell transcriptomes (2020) (31)
- Cardelino: computational integration of somatic clonal substructure and single-cell transcriptomes (2020) (31)
- Identifying Extrinsic versus Intrinsic Drivers of Variation in Cell Behavior in Human iPSC Lines from Healthy Donors (2019) (29)
- Genomic basis for RNA alterations revealed by whole-genome analyses of 27 cancer types (2017) (27)
- Subclone-specific microenvironmental impact and drug response in refractory multiple myeloma revealed by single‐cell transcriptomics (2021) (27)
- Systematic genetic analysis of the MHC region reveals mechanistic underpinnings of HLA type associations with disease (2019) (26)
- A spatial multi-omics atlas of the human lung reveals a novel immune cell survival niche (2021) (26)
- Naive Pluripotent Stem Cells Exhibit Phenotypic Variability that Is Driven by Genetic Variation (2020) (26)
- Personalized medicine: from genotypes, molecular phenotypes and the quantified self, towards improved medicine. (2014) (25)
- Modelling local gene networks increases power to detect trans-acting genetic effects on gene expression (2016) (24)
- Statistical Tests for Detecting Differential RNA-Transcript Expression from Read Counts (2010) (24)
- An Introduction to Probabilistic modeling (2010) (23)
- MUON: multimodal omics analysis framework (2021) (23)
- Inference algorithms and learning theory for Bayesian sparse factor analysis (2009) (22)
- Detecting low-complexity unobserved causes (2011) (22)
- Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples (2020) (22)
- IceR improves proteome coverage and data completeness in global and single-cell proteomics (2020) (22)
- A linear mixed-model approach to study multivariate gene–environment interactions (2018) (21)
- Genetic associations at regulatory phenotypes improve fine-mapping of causal variants for 12 immune-mediated diseases (2020) (21)
- Discovery and quality analysis of a comprehensive set of structural variants and short tandem repeats (2019) (20)
- MOFA+: a probabilistic framework for comprehensive integration of structured single-cell data (2019) (20)
- Mitochondrial DNA variants modulate N-formylmethionine, proteostasis and risk of late-onset human diseases (2021) (20)
- Common genetic variation drives molecular heterogeneity in human iPSCs (2016) (19)
- Erratum to: DeepCpG: accurate prediction of single-cell DNA methylation states using deep learning (2017) (18)
- Joint genetic analysis using variant sets reveals polygenic gene-context interactions (2016) (18)
- GeneCodeq: quality score compression and improved genotyping using a Bayesian framework (2016) (18)
- Detecting regulatory gene-environment interactions with unmeasured environmental factors (2013) (16)
- Pan-cancer study of heterogeneous RNA aberrations (2017) (16)
- DNA methylation variation in Arabidopsis has a genetic basis and shows evidence of local adaptation (2014) (16)
- SpatialDE2: Fast and localized variance component analysis of spatial transcriptomics (2021) (15)
- Genomic Rearrangements in Arabidopsis Considered as Quantitative Traits (2017) (15)
- Scalable latent-factor models applied to single-cell RNA-seq data separate biological drivers from confounding effects (2016) (14)
- Using the past to estimate sensory uncertainty (2016) (14)
- Single cell multi-omics profiling reveals a hierarchical epigenetic landscape during mammalian germ layer specification (2019) (13)
- 12 Grand Challenges in Single-Cell Data Science (2019) (12)
- Cardelino: Integrating whole exomes and single-cell transcriptomes to reveal phenotypic impact of somatic variants (2018) (12)
- Erosion of human X chromosome inactivation causes major remodeling of the iPSC proteome (2020) (12)
- A kernel method for unsupervised structured network inference (2009) (11)
- Interactions between genetic variation and cellular environment in skeletal muscle gene expression (2017) (11)
- Systematic assessment of regulatory effects of human disease variants in pluripotent cells (2019) (11)
- Integrative Genome-wide Analysis of the Determinants of RNA Splicing in Kidney Renal Clear Cell Carcinoma (2014) (11)
- Author response: The Human Cell Atlas (2017) (10)
- easyGWAS: An integrated interspecies platform for performing genome-wide association studies (2012) (10)
- Vitamin A/ retinoic acid signaling regulates hematopoietic stem cell dormancy (2017) (10)
- CellRegMap: a statistical framework for mapping context‐specific regulatory variants using scRNA‐seq (2021) (10)
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data (2020) (10)
- Multi-Omics factor analysis disentangles heterogeneity in blood cancer (2017) (10)
- Framework and baseline examination of the German National Cohort (NAKO) (2022) (9)
- Characterization of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infection Clusters Based on Integrated Genomic Surveillance, Outbreak Analysis and Contact Tracing in an Urban Setting (2021) (9)
- Mapping interindividual dynamics of innate immune response at single-cell resolution (2021) (9)
- Publisher Correction: Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression (2020) (9)
- Lung, spleen and oesophagus tissue remains stable for scRNAseq in cold preservation (2019) (8)
- LiMMBo: a simple, scalable approach for linear mixed models in high-dimensional genetic association studies (2018) (8)
- De novo assembly of 64 haplotype-resolved human genomes of diverse ancestry and integrated analysis of structural variation (2020) (8)
- Single-cell Atlas of common variable immunodeficiency shows germinal center-associated epigenetic dysregulation in B-cell responses (2022) (8)
- A Pan-Cancer Transcriptome Analysis Reveals Pervasive Regulation through Tumor-Associated Alternative Promoters (2017) (7)
- Temporal mixture modelling of single-cell RNA-seq data resolves a CD4+ T cell fate bifurcation (2016) (7)
- Publisher Correction: LifeTime and improving European healthcare through cell-based interceptive medicine (2021) (7)
- Genetic Analyses of Blood Cell Structure for Biological and Pharmacological Inference (2020) (7)
- Multi-omics Characterization of Interaction-mediated Control of Human Protein Abundance levels. (2019) (6)
- ShapePheno: unsupervised extraction of shape phenotypes from biological image collections (2012) (6)
- Multi-omics characterization of interaction-mediated control of human protein abundance levels (2018) (5)
- Discovering Temporal Patterns of Differential Gene Expression in Microarray Time Series (2009) (5)
- Multi-omics Characterization of Interaction-mediated Control of Human Protein Abundance levels* (2019) (5)
- A pan cancer analysis of promoter activity highlights the regulatory role of alternative transcription start sites and their association with noncoding mutations (2017) (5)
- Genetic Analysis of Transformed Phenotypes (2014) (4)
- scDALI: modeling allelic heterogeneity in single cells reveals context-specific genetic regulation (2022) (4)
- Assessing the Gene Regulatory Landscape in 1,188 Human Tumors (2017) (4)
- Single cell multi-omics analysis of chromothriptic medulloblastoma highlights genomic and transcriptomic consequences of genome instability (2021) (4)
- Common genetic variation drives molecular heterogeneity in human iPSCs (vol 546, pg 370, 2017) (2017) (4)
- The Organoid Cell Atlas: A Rosetta Stone for Biomedical Discovery and Regenerative Therapy (2020) (4)
- Genomic Rearrangements Considered as Quantitative Traits (2016) (4)
- pycoMeth: a toolbox for differential methylation testing from Nanopore methylation calls (2022) (3)
- Personalized medicine: from genotypes and molecular phenotypes towards therapy- session introduction. (2013) (3)
- Spatially resolved single-cell multiomics map of human trophoblast differentiation in early pregnancy (2022) (3)
- Genomic properties of structural variants and short tandem repeats that impact gene expression and complex traits in humans (2019) (3)
- FISHFactor: A Probabilistic Factor Model for Spatial Transcriptomics Data with Subcellular Resolution (2021) (3)
- Dissecting indirect genetic effects from peers in laboratory mice (2021) (3)
- Author response: DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation (2015) (3)
- Tandem duplications lead to loss of fitness effects in CRISPR-Cas9 data (2018) (3)
- Efficient branch-and-bound techniques for two-locus association mapping (2011) (3)
- Structural variant classes and short tandem repeats differentially impact gene expression and complex traits (2019) (3)
- Genome-wide association study of social genetic effects on 170 phenotypes in laboratory mice (2018) (3)
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression (2020) (3)
- A spatially resolved atlas of the human lung characterizes a gland-associated immune niche (2022) (3)
- scDALI: Modelling allelic heterogeneity of DNA accessibility in single-cells reveals context-specific genetic regulation (2021) (2)
- Author Correction: Cell segmentation-free inference of cell types from in situ transcriptomics data (2021) (2)
- Genome-wide scale analyses identify novel BMI genotype-environment interactions using a conditional false discovery rate (2020) (2)
- Dissecting the mechanisms underlying indirect genetic effects on biomedical phenotypes: a study of 170 behavioural, physiological and morphological phenotypes measured in adult laboratory mice (2020) (2)
- A single-cell transcriptomics CRISPR-activation screen identifies new epigenetic regulators of zygotic genome activation (2019) (2)
- Comparative architectures of direct and social genetic effects from the genome-wide association study of 170 phenotypes in outbred laboratory mice (2018) (2)
- Identifying the genetic basis of variation in cell behaviour in human iPS cell lines from healthy donors (2018) (1)
- Structural rearrangements generate cell-specific, gene-independent CRISPR-Cas9 loss of fitness effects (2019) (1)
- Vireo: Bayesian demultiplexing of pooled single-cell RNA-seq data without genotype reference (2019) (1)
- LifeTime and improving European healthcare through cell-based interceptive medicine (2020) (1)
- Single-Cell Atlas of Common Variable Immunodeficiency reveals germinal center-associated epigenetic dysregulation in B cell responses (2021) (1)
- Abstract SY10-02: Pan-cancer study of recurrent and heterogeneous RNA aberrations and association with whole-genome variants (2017) (1)
- MUON: multimodal omics analysis framework (2022) (1)
- Accurate modeling of confounding variation in eQTL studies leads to a great increase in power to detect trans-regulatory effects (2011) (1)
- Genome-wide mapping of genetic determinants influencing DNA methylation and gene expression in human hippocampus (2017) (1)
- Robustness and applicability of functional genomics tools on scRNA-seq data (2019) (1)
- Relational models for generating labeled real-world graphs (2009) (1)
- Combined single-cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneity (2019) (1)
- scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells (2018) (1)
- Spatial multiomics map of trophoblast development in early pregnancy (2023) (1)
- Publisher Correction: Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression (2020) (1)
- PERSONALIZED MEDICINE: FROM GENOTYPES AND MOLECULAR PHENOTYPES TOWARDS COMPUTED THERAPY. (2013) (1)
- An Introduction to Graph Mining (2010) (1)
- PERSONALIZED MEDICINE: FROM GENOTYPES AND MOLECULAR PHENOTYPES TOWARDS COMPUTED THERAPY. (2011) (1)
- Warped Matrix Factorisation for Multi-view Data Integration (2016) (1)
- Dissecting indirect genetic effects from peers 1 in laboratory mice 2 3 (2021) (1)
- Properties of structural variants and short tandem repeats associated with gene expression and complex traits (2020) (1)
- Single cell DNA methylation ageing in mouse blood (2023) (1)
- Author Correction: Pan-cancer analysis of whole genomes (2023) (1)
- Multi-tissue DNA methylation age predictor in mouse (2017) (1)
- Discovery and quality analysis of a comprehensive set of structural variants and short tandem repeats (2020) (1)
- Mutation-Attention (MuAt): deep representation learning of somatic mutations for tumour typing and subtyping (2022) (1)
- Author response: The single-cell eQTLGen consortium (2020) (1)
- A mixed model approach for joint genetic analysis of alternatively spliced transcript isoforms using RNA-Seq data (2012) (1)
- Eleven grand challenges in single-cell data science (2020) (1)
- f-scLVM: scalable and versatile factor analysis for single-cell RNA-seq (2017) (1)
- Simultaneous cellular and molecular phenotyping of embryonic mutants using single-cell regulatory trajectories (2022) (1)
- A Comprehensive Analysis of Single-Cell Chromatin Accessibility and Gene Expression Identifies Intra-Tumor Heterogeneity and Molecular Treatment Responses in Relapsed/Refractory Multiple Myeloma (2019) (0)
- PERSONALIZED MEDICINE: FROM GENOTYPES AND MOLECULAR PHENOTYPES TOWARDS THERAPY. (2014) (0)
- The germline genetic component of drug sensitivity in cancer cell lines (2018) (0)
- Spatial and temporal transcriptomics of SHH-medulloblastoma with chromothripsis identifies multiple genetic clones that resist to treatment and lead to relapse (2023) (0)
- Explaining Confounding Factors in eQTL Studies using a Dictionary of Latent Variables (2010) (0)
- A novel IgA plasma cell niche in the human airways (2022) (0)
- Experimental design for genome-wide association studies (2010) (0)
- Genomic basis for RNA alterations in cancer (2020) (0)
- Long-read sequencing of diagnosis and post-therapy medulloblastoma reveals complex rearrangement patterns and epigenetic signatures (2022) (0)
- Session Introduction (2003) (0)
- Multi-omics profiling of mouse gastrulation at single-cell resolution (2019) (0)
- Genome-Scale Oscillation s in DNA Methylation during Exit from Pluripotency Graphical (2018) (0)
- Publisher Correction: LifeTime and improving European healthcare through cell-based interceptive medicine (2021) (0)
- Transition out of HSC Dormancy By a Continuous Upregulation of Metabolism Is Controlled Via Dietary Vitamin A/ Retinoic Acid Signaling (2016) (0)
- Epithelial cells of the intestine acquire cell-intrinsic inflammation signatures during ageing (2021) (0)
- Author Correction: Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples (2020) (0)
- Dissecting indirect genetic effects from peers in laboratory mice (2021) (0)
- Computationally resolving the bifurcation of Th1 and Tfh cell fates with single-cell RNA-sequencing (2017) (0)
- Erratum to: DeepCpG: accurate prediction of single-cell DNA methylation states using deep learning (2017) (0)
- DeepCpG: accurate prediction of single-cell DNA methylation states using deep learning (2017) (0)
- Association mapping of complex phenotypes using models at a systems level (2010) (0)
- Author Correction: Patterns of somatic structural variation in human cancer genomes (2020) (0)
- Author Correction: Genomic basis for RNA alterations in cancer (2023) (0)
- Author response: Using the past to estimate sensory uncertainty (2020) (0)
- The Kipoi repository accelerates community exchange and reuse of predictive models for genomics (2019) (0)
- An introduction to Gaussian processes (2010) (0)
- Single-Cell Multi-Omics Reveal Longitudinal Dynamics of Clonal Architecture and Microenvironment Interactions in Relapsed-Refractory Myeloma (2022) (0)
- Promoter shape varies across populations and affects promoter evolution and expression noise (2017) (0)
- Association mapping and prediction of complex structured phenotypes (2009) (0)
- scDALI: modeling allelic heterogeneity in single cells reveals context-specific genetic regulation (2022) (0)
- The Organoid Cell Atlas (2020) (0)
- Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types (2017) (0)
- Resource Genomic Determinants of Protein Abundance Variation in Colorectal Cancer Cells (2018) (0)
- Late Breaking Abstract - A multiomic micro- and macro-anatomical cell atlas of the human lungs and airways (2021) (0)
- Blastocyst Development in Mice: Single Cell TaqMan Arrays (2016) (0)
- Effects of the COVID-19 pandemic on life scientists (2020) (0)
- The Future of Genome-Based Medicine (2012) (0)
- Modelling local gene networks increases power to detect trans-acting genetic effects on gene expression (2016) (0)
- Population-scale proteome variation in 1 human induced pluripotent stem cells 2 3 (2018) (0)
- Exploiting NGS technologies for efficient and accurate genotype to phenotype mapping in plant systems (2012) (0)
- Author response: Population-scale proteome variation in human induced pluripotent stem cells (2020) (0)
- Cardelino: computational integration of somatic clonal substructure and single-cell transcriptomes (2020) (0)
- Detecting differential RNA-transcript expression (2010) (0)
- Cardelino: computational integration of somatic clonal substructure and single-cell transcriptomes (2020) (0)
- Multi-Omics Profiling of JMML HSPCs Reveals Onco-Fetal Reprogramming and Identifies Novel Prognostic Biomarkers and Therapeutic Targets in High-Risk JMML (2022) (0)
- Reply. (2018) (0)
- Author Correction: The evolutionary history of 2,658 cancers (2023) (0)
- Dissecting Heterogeneity of Tumor Cells and Their Microenvironment in Refractory Multiple Myeloma (2019) (0)
- OAB-007: Single-cell multiomic analysis identifies regulatory programs in relapsed/refractory multiple myeloma (2021) (0)
- Epigenetic variation in a nearly isogenic population. (2015) (0)
- Detecting Differential Transcript Expression from RNA-SEQ Experiments (2010) (0)
- Exit from HSC dormancy by a continuous upregulation of metabolism is controlled via vitamin A/ retinoic acid (2016) (0)
- Predicting related traits from SNP markers by multi-task learning (2009) (0)
- Erosion of human X chromosome inactivation alters proteome expression from genes across the X chromosome and all autosomes (2020) (0)
- In-depth genetic analysis of 6p21.3 reveals insights into associations between HLA types and complex traits and disease (2019) (0)
- Additional File 3_retina.xlsx (2017) (0)
- MOFA+: a statistical framework for comprehensive integration of multi-modal single-cell data (2020) (0)
- P-060: Subclone-specific microenvironmental impact and drug response in refractory multiple myeloma revealed by single cell transcriptomics (2021) (0)
- Author Correction: Inferring structural variant cancer cell fraction (2022) (0)
- ArabidopsisDefense againstBotrytis cinerea: Chronology and Regulation Deciphered by High-Resolution Temporal Transcriptomic AnalysisC (2013) (0)
- XClone: detection of allele-specific subclonal copy number variations from single-cell transcriptomic data (2023) (0)
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