Patrick D. Schloss
#133,916
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Microbiome researcher
Patrick D. Schloss's AcademicInfluence.com Rankings
Patrick D. Schlossbiology Degrees
Biology
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#12182
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Microbiology
#473
World Rank
#534
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Biology
Why Is Patrick D. Schloss Influential?
(Suggest an Edit or Addition)Patrick D. Schloss's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities (2009) (16682)
- Structure, Function and Diversity of the Healthy Human Microbiome (2012) (8630)
- Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform (2013) (4964)
- Introducing DOTUR, a Computer Program for Defining Operational Taxonomic Units and Estimating Species Richness (2005) (2524)
- A framework for human microbiome research (2012) (2113)
- Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies (2011) (1911)
- Metagenomics: genomic analysis of microbial communities. (2004) (1021)
- Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome (2012) (912)
- Dynamics and associations of microbial community types across the human body (2014) (689)
- Assessing and Improving Methods Used in Operational Taxonomic Unit-Based Approaches for 16S rRNA Gene Sequence Analysis (2011) (629)
- Comparison of the respiratory microbiome in healthy nonsmokers and smokers. (2013) (614)
- Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications (2011) (588)
- EPIGENETIC REGULATION OF CELLULAR MEMORY BY THE POLYCOMB AND TRITHORAX GROUP PROTEINS (2008) (579)
- The Gut Microbiome Modulates Colon Tumorigenesis (2013) (569)
- Decade-long bacterial community dynamics in cystic fibrosis airways (2012) (565)
- Status of the Microbial Census (2004) (557)
- Biotechnological prospects from metagenomics. (2003) (550)
- Toward a Census of Bacteria in Soil (2006) (438)
- Looking for a Signal in the Noise: Revisiting Obesity and the Microbiome (2016) (423)
- The Human Gut Microbiome as a Screening Tool for Colorectal Cancer (2014) (418)
- Metagenomics for studying unculturable microorganisms: cutting the Gordian knot (2005) (396)
- Integration of Microbial Ecology and Statistics: a Test To Compare Gene Libraries (2004) (365)
- The Effects of Alignment Quality, Distance Calculation Method, Sequence Filtering, and Region on the Analysis of 16S rRNA Gene-Based Studies (2010) (350)
- A High-Throughput DNA Sequence Aligner for Microbial Ecology Studies (2009) (296)
- Introducing SONS, a Tool for Operational Taxonomic Unit-Based Comparisons of Microbial Community Memberships and Structures (2006) (291)
- OptiClust, an Improved Method for Assigning Amplicon-Based Sequence Data to Operational Taxonomic Units (2017) (289)
- Evaluation of 16S rDNA-Based Community Profiling for Human Microbiome Research (2012) (282)
- Microbiome Data Distinguish Patients with Clostridium difficile Infection and Non-C. difficile-Associated Diarrhea from Healthy Controls (2014) (263)
- Microbiota-based model improves the sensitivity of fecal immunochemical test for detecting colonic lesions (2016) (236)
- The interplay between microbiome dynamics and pathogen dynamics in a murine model of Clostridium difficile Infection (2011) (233)
- Structure of the gut microbiome following colonization with human feces determines colonic tumor burden (2014) (228)
- De novo clustering methods outperform reference-based methods for assigning 16S rRNA gene sequences to operational taxonomic units (2015) (227)
- Novelty and Uniqueness Patterns of Rare Members of the Soil Biosphere (2008) (219)
- NLRP6 Protects Il10-/- Mice from Colitis by Limiting Colonization of Akkermansia muciniphila. (2017) (217)
- Intracellular Screen To Identify Metagenomic Clones That Induce or Inhibit a Quorum-Sensing Biosensor (2005) (214)
- Antibiotic-Induced Alterations of the Murine Gut Microbiota and Subsequent Effects on Colonization Resistance against Clostridium difficile (2015) (213)
- Evaluating different approaches that test whether microbial communities have the same structure (2008) (199)
- Changes in cystic fibrosis airway microbiota at pulmonary exacerbation. (2013) (196)
- Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system (2016) (188)
- Mathematical modeling of primary succession of murine intestinal microbiota (2013) (170)
- Bacteria Associated with the Guts of Two Wood-Boring Beetles: Anoplophora glabripennis and Saperda vestita (Cerambycidae) (2006) (144)
- Diagnostic Potential and Interactive Dynamics of the Colorectal Cancer Virome (2018) (144)
- Identifying and Overcoming Threats to Reproducibility, Replicability, Robustness, and Generalizability in Microbiome Research (2018) (139)
- The metatranscriptome of a deep-sea hydrothermal plume is dominated by water column methanotrophs and lithotrophs (2012) (138)
- The daily dynamics of cystic fibrosis airway microbiota during clinical stability and at exacerbation (2015) (128)
- Dynamics and Establishment of Clostridium difficile Infection in the Murine Gastrointestinal Tract (2014) (127)
- Robustness of the Bacterial Community in the Cabbage White Butterfly Larval Midgut (2009) (126)
- What is the extent of prokaryotic diversity? (2006) (119)
- Introducing TreeClimber, a Test To Compare Microbial Community Structures (2006) (119)
- Metabolic and Community Synergy of Oral Bacteria in Colorectal Cancer (2016) (119)
- Status of the Archaeal and Bacterial Census: an Update (2016) (118)
- A statistical toolbox for metagenomics: assessing functional diversity in microbial communities (2008) (114)
- Multicenter Comparison of Lung and Oral Microbiomes of HIV-infected and HIV-uninfected Individuals. (2015) (113)
- Stabilization of the murine gut microbiome following weaning (2012) (111)
- Clostridium difficile Colonizes Alternative Nutrient Niches during Infection across Distinct Murine Gut Microbiomes (2017) (107)
- Characterization of Gut-Associated Bacteria in Larvae and Adults of the Southern Pine Beetle, Dendroctonus frontalis Zimmermann (2006) (103)
- Manipulation of the Gut Microbiota Reveals Role in Colon Tumorigenesis (2015) (97)
- Gut Microbiota of an Invasive Subcortical Beetle, Agrilus planipennis Fairmaire, Across Various Life Stages (2008) (97)
- Reintroducing mothur: 10 Years Later (2019) (97)
- Tracking temporal changes of bacterial community fingerprints during the initial stages of composting. (2003) (96)
- The dynamics of a family’s gut microbiota reveal variations on a theme (2014) (95)
- Fecal Microbiota Signatures Are Associated with Response to Ustekinumab Therapy among Crohn’s Disease Patients (2018) (85)
- Bioinformatics for the Human Microbiome Project (2012) (84)
- Reporting guidelines for human microbiome research: the STORMS checklist (2021) (82)
- Psychrotrophic strain of Janthinobacterium lividum from a cold Alaskan soil produces prodigiosin. (2010) (81)
- The Impact of DNA Polymerase and Number of Rounds of Amplification in PCR on 16S rRNA Gene Sequence Data (2019) (80)
- Gut Microbiota Modulate CD8 T Cell Responses to Influence Colitis-Associated Tumorigenesis. (2020) (74)
- Molecular characterization of fungal community dynamics in the initial stages of composting. (2005) (72)
- Composition of the bacterial community in the gut of the pine engraver, Ips pini (Say) (Coloptera) colonizing red pine (2007) (65)
- Clostridium difficile Alters the Structure and Metabolism of Distinct Cecal Microbiomes during Initial Infection To Promote Sustained Colonization (2018) (65)
- Secondary structure improves OTU assignments of 16S rRNA gene sequences (2012) (63)
- A Framework for Effective Application of Machine Learning to Microbiome-Based Classification Problems (2020) (60)
- Impact of Enhanced Staphylococcus DNA Extraction on Microbial Community Measures in Cystic Fibrosis Sputum (2012) (59)
- Intra- and Interindividual Variations Mask Interspecies Variation in the Microbiota of Sympatric Peromyscus Populations (2014) (49)
- Amplicon Sequence Variants Artificially Split Bacterial Genomes into Separate Clusters (2021) (49)
- Spatial Variation of the Native Colon Microbiota in Healthy Adults (2017) (45)
- The Glucoamylase Inhibitor Acarbose Has a Diet-Dependent and Reversible Effect on the Murine Gut Microbiome (2019) (45)
- Leveraging Existing 16S rRNA Gene Surveys To Identify Reproducible Biomarkers in Individuals with Colorectal Tumors (2018) (45)
- Application of a Database-Independent Approach To Assess the Quality of Operational Taxonomic Unit Picking Methods (2016) (44)
- Toward unrestricted use of public genomic data (2019) (40)
- Normalization of the microbiota in patients after treatment for colonic lesions (2017) (40)
- Quantifying bacterial population dynamics in compost using 16S rRNA gene probes (2004) (40)
- Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis (2013) (38)
- Species Richness Taxonomic Units and Estimating Program for Defining Operational Introducing DOTUR , a Computer (2005) (38)
- The last word: books as a statistical metaphor for microbial communities. (2007) (37)
- DNA from fecal immunochemical test can replace stool for detection of colonic lesions using a microbiota-based model (2016) (37)
- Microbial community function and biomarker discovery in the human microbiome (2011) (36)
- Nonsteroidal Anti-inflammatory Drugs Alter the Microbiota and Exacerbate Clostridium difficile Colitis while Dysregulating the Inflammatory Response (2018) (34)
- Biogeography and environmental conditions shape bacteriophage-bacteria networks across the human microbiome (2017) (32)
- Erratum: NLRP6 Protects Il10−/− Mice from Colitis by Limiting Colonization of Akkermansia muciniphila (Cell Reports (2017) 19(4) (733–745) (S2211124717304576) (10.1016/j.celrep.2017.03.080)) (2017) (32)
- Effect of Sample Storage Conditions on Culture-Independent Bacterial Community Measures in Cystic Fibrosis Sputum Specimens (2011) (29)
- The use of the analysis of variance to assess the influence of mixing during composting (2000) (27)
- Microbiology: An integrated view of the skin microbiome (2014) (26)
- Fecal Short-Chain Fatty Acids Are Not Predictive of Colonic Tumor Status and Cannot Be Predicted Based on Bacterial Community Structure (2019) (24)
- Effective application of machine learning to microbiome-based classification problems (2019) (23)
- Measurement of process performance and variability in inoculated composting reactors using ANOVA and power analysis (2000) (22)
- mikropml: User-Friendly R Package for Supervised Machine Learning Pipelines (2021) (17)
- NLRP6 Protects Il10-/- Mice from Colitis by Limiting Colonization of Akkermansia muciniphila. (2017) (17)
- Microbial Characterization of Qatari Barchan Sand Dunes (2016) (17)
- Protection from Lethal Clostridioides difficile Infection via Intraspecies Competition for Cogerminant (2021) (16)
- Women Are Underrepresented and Receive Differential Outcomes at ASM Journals: a Six-Year Retrospective Analysis (2020) (15)
- Support Science by Publishing in Scientific Society Journals (2017) (12)
- The ASM Journals Committee Values the Contributions of Black Microbiologists (2020) (12)
- MOLECULAR ASSESSMENT OF INOCULUM EFFICACY AND PROCESS REPRODUCIBILITY IN COMPOSTING USING ARISA (2003) (11)
- Microbiota-based model improves the sensitivity of fecal immunochemical test for detecting colonic lesions (2016) (11)
- The Initial Gut Microbiota and Response to Antibiotic Perturbation Influence Clostridioides difficile Clearance in Mice (2020) (10)
- Removal of rare amplicon sequence variants from 16S rRNA gene sequence surveys biases the interpretation of community structure data (2020) (10)
- Low prevalence of Clostridium septicum fecal carriage in an adult population. (2015) (10)
- OptiClust: Improved method for assigning amplicon-based sequence data to operational taxonomic units (2016) (9)
- Association of bacterial community types, functional microbial processes and lung disease in cystic fibrosis airways (2021) (9)
- ASSESSMENT AND IMPROVEMENT OF PROCESS VARIABLE REPRODUCIBILITY IN COMPOSTING REACTORS (2000) (8)
- Preprinting Microbiology (2017) (8)
- Erratum for Sze and Schloss, “Looking for a Signal in the Noise: Revisiting Obesity and the Microbiome” (2017) (8)
- Clearance of Clostridioides difficile Colonization Is Associated with Antibiotic-Specific Bacterial Changes (2020) (7)
- Structures Community Memberships and Comparisons of Microbial Operational Taxonomic Unit-Based Introducing SONS , a Tool for (2006) (7)
- Normalization of the microbiota in patients after treatment for colonic lesions (2017) (6)
- An Osmotic Laxative Renders Mice Susceptible to Prolonged Clostridioides difficile Colonization and Hinders Clearance (2021) (6)
- Viral and Bacterial Communities of Colorectal Cancer (2017) (6)
- The Diagnostic Potential & Interactive Dynamics of the Colorectal Cancer Virome (2017) (5)
- Ten simple rules to increase computational skills among biologists with Code Clubs (2020) (5)
- A Goldilocks Principle for the Gut Microbiome: Taxonomic Resolution Matters for Microbiome-Based Classification of Colorectal Cancer (2021) (5)
- The proton pump inhibitor omeprazole does not promote Clostridium difficile colonization in a murine model (2019) (4)
- Consent insufficient for data release—Response (2019) (4)
- Microbial community function and biomarker discovery in the human microbiome (2011) (4)
- Erratum for Sze and Schloss, “Leveraging Existing 16S rRNA Gene Surveys To Identify Reproducible Biomarkers in Individuals with Colorectal Tumors” (2018) (4)
- The Riffomonas Reproducible Research Tutorial Series (2018) (4)
- The Gut Bacterial Community Potentiates Clostridioides difficile Infection Severity (2022) (4)
- Coding-Complete RNA Virus Genomes Assembled from Murine Cecal Metatranscriptomes (2020) (3)
- Metabolomics and the Microbiome: Characterizing Molecular Diversity in Complex Microbial Communities (2020) (3)
- The status of the microbial census: an update (2016) (3)
- The ASM Journals Committee Values the Contributions of Black Microbiologists (2020) (3)
- The Proton Pump Inhibitor Omeprazole Does Not Promote Clostridioides difficile Colonization in a Murine Model (2019) (2)
- Mo1796 The Gut Microbiome Differentiates Clinical Phenotypes in Moderate to Severe Crohn's Disease: Results From the CERTIFI Study (2015) (2)
- Top 10 research priorities in colorectal cancer: results from the Colorectal Cancer Priority-Setting Partnership (2022) (2)
- OptiFit: an Improved Method for Fitting Amplicon Sequences to Existing OTUs (2021) (2)
- Nurturing the microbiome field. (2015) (2)
- and Estimating Species Richness for Defining Operational Taxonomic Units Introducing DOTUR , a Computer Program (2005) (2)
- Clostridium difficile differentially alters the structure and metabolism of distinct cecal microbiomes to promote persistent colonization during infection (2017) (2)
- Intestinal Inflammation Reversibly Alters the Microbiota to Drive Susceptibility to Clostridioides difficile Colonization in a Mouse Model of Colitis (2022) (1)
- DNA from fecal immunochemical test can replace stool for microbiota-based colorectal cancer screening (2016) (1)
- Gut bacteria of bark and wood boring beetles (2007) (1)
- In Defense of an Academic Career in Microbiology (2018) (1)
- The ASM Journals Committee Values the Contributions of Black Microbiologists (2020) (1)
- The dynamics of a family’s gut microbiota reveal variations on a theme (2014) (1)
- Developing and deploying an integrated workshop curriculum teaching computational skills for reproducible research (2021) (1)
- Protection from lethal Clostridioides difficile infection via intraspecies competition for co-germinant (2021) (1)
- Diluted Fecal Community Transplant Restores Clostridioides difficile Colonization Resistance to Antibiotic-Perturbed Murine Communities (2022) (1)
- Application of database-independent approach to assess the quality of OTU picking methods (2016) (1)
- The ASM Journals Committee Values the Contributions of Black Microbiologists (2020) (1)
- The Fecal Microbiome as a Tool for Monitoring and Predicting Response Outcomes in Ustekinumab-Treated, Anti-TNFî‘ Refractory Crohn’s Disease Patients: Results from the Certifi Study (2017) (1)
- Erratum for Schloss et al., “Support Science by Publishing in Scientific Society Journals” (2017) (1)
- The ASM Journals Committee Values the Contributions of Black Microbiologists (2020) (1)
- Su562 DOES MUCOSAL AKKERMANSIA ABUNDANCE PREDICT OMEGA FATTY ACIDS AND PGE2 PRODUCTION AFTER DIETARY INTERVENTION? (2021) (0)
- The ASM Journals Committee Values the Contributions of Black Microbiologists (2020) (0)
- Streamlined implementation of a machine learning model to classify screen relevant neoplasia using reference-based OTU clustering (2022) (0)
- Erratum for Baxter et al., “The Glucoamylase Inhibitor Acarbose Has a Diet-Dependent and Reversible Effect on the Murine Gut Microbiome” (2019) (0)
- The ASM Journals Committee Values the Contributions of Black Microbiologists (2020) (0)
- The Decision To Publish Gutierrez-Alvarez et al., “Middle East Respiratory Syndrome Coronavirus Gene 5 Modulates Pathogenesis in Mice” (2020) (0)
- Characterizing changes in the intestinal microflora: Relation to exposure to enteral nutrients (2011) (0)
- The ASM Journals Committee Values the Contributions of Black Microbiologists (2020) (0)
- DOP053 The fecal microbiome as a tool for monitoring and predicting response outcomes in ustekinumab-treated, anti-TNFα refractory Crohn's disease patients: results from the CERTIFI study. (2017) (0)
- The ASM Journals Committee Values the Contributions of Black Microbiologists (2020) (0)
- The Riffomonas YouTube Channel: An Educational Resource To Foster Reproducible Research Practices (2023) (0)
- The ASM Journals Committee Values the Contributions of Black Microbiologists (2020) (0)
- The initial gut microbiota and response to antibiotic perturbation influence Clostridioides difficile colonization in mice (2020) (0)
- Erratum for Hagan et al., “Women Are Underrepresented and Receive Differential Outcomes at ASM Journals: a Six-Year Retrospective Analysis” (2021) (0)
- The ASM Journals Committee Values the Contributions of Black Microbiologists (2020) (0)
- Sociality does not predict oral microbiome composition or diversity in free-living prairie voles (2023) (0)
- Tu1540: COMPARING MICROBIOME COMPOSITION IN LYNCH SYNDROME PATIENTS WITH AND WITHOUT A HISTORY OF COLORECTAL NEOPLASIA (2022) (0)
- DNA from fecal immunochemical test can replace stool for detection of colonic lesions using a microbiota-based model (2016) (0)
- The ASM Journals Committee Values the Contributions of Black Microbiologists (2020) (0)
- The gut microbiome can contribute to colon tumor susceptibility via an effect on CD8+ T cell responses (2019) (0)
- Assigning 16 S rRNA gene sequences to operational taxonomic units ( OTUs ) allows microbial (2016) (0)
- The ASM Journals Committee Values the Contributions of Black Microbiologists (2020) (0)
- Intra-and inter-individual variation masks inter-species variation 1 in the microbiota of sympatric Peromyscus populations 2 3 Running title : Variation in the Peromyscus microbiota 4 5 (2014) (0)
- Clones That Induce or Inhibit a Quorum-Sensing 2005 . Intracellular Screen To Identify Metagenomic (2005) (0)
- StructuresMemberships and Comparisons of Microbial Operational Taxonomic Unit-Based Introducing SONS, a Tool for (2010) (0)
- User-Friendly R Package for Supervised Machine Learning Pipelines [R package mikropml version 0.0.2] (2020) (0)
- Jo Handelsman: Adviser, Teacher, Role Model, Friend (2018) (0)
- Machine learning classification by fitting amplicon sequences to existing OTUs (2023) (0)
- 54101 Characterizing Microbiota Features of Clostridioides difficile Infections (2021) (0)
- The ASM Journals Committee Values the Contributions of Black Microbiologists (2020) (0)
- Nlrp6 limits inflamation in mouse colon by regulating microbiota (2016) (0)
- Running title : Introducing mothur Appropriate Section : Methods (2009) (0)
- The ASM Journals Committee Values the Contributions of Black Microbiologists (2020) (0)
- The effect of treatment on the microbiota of patients diagnosed with colonic lesions (2017) (0)
- Structure of the gut microbiome following colonization with human feces determines colonic tumor burden (2014) (0)
- Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis (2013) (0)
- Explaining Order among Those Who Share Positions in the Author Byline (2019) (0)
- The daily dynamics of cystic fibrosis airway microbiota during clinical stability and at exacerbation (2015) (0)
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What Schools Are Affiliated With Patrick D. Schloss?
Patrick D. Schloss is affiliated with the following schools: