Patrick D. Schloss

Patrick D. Schloss's AcademicInfluence.com Rankings

Patrick D. Schloss

Biology

#9026

World Rank

#12182

Historical Rank

Microbiology

#473

World Rank

#534

Historical Rank

biology Degrees

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Biology

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Patrick D. Schloss's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities (2009) (16682)
Structure, Function and Diversity of the Healthy Human Microbiome (2012) (8630)
Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform (2013) (4964)
Introducing DOTUR, a Computer Program for Defining Operational Taxonomic Units and Estimating Species Richness (2005) (2524)
A framework for human microbiome research (2012) (2113)
Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies (2011) (1911)
Metagenomics: genomic analysis of microbial communities. (2004) (1021)
Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome (2012) (912)
Dynamics and associations of microbial community types across the human body (2014) (689)
Assessing and Improving Methods Used in Operational Taxonomic Unit-Based Approaches for 16S rRNA Gene Sequence Analysis (2011) (629)
Comparison of the respiratory microbiome in healthy nonsmokers and smokers. (2013) (614)
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications (2011) (588)
EPIGENETIC REGULATION OF CELLULAR MEMORY BY THE POLYCOMB AND TRITHORAX GROUP PROTEINS (2008) (579)
The Gut Microbiome Modulates Colon Tumorigenesis (2013) (569)
Decade-long bacterial community dynamics in cystic fibrosis airways (2012) (565)
Status of the Microbial Census (2004) (557)
Biotechnological prospects from metagenomics. (2003) (550)
Toward a Census of Bacteria in Soil (2006) (438)
Looking for a Signal in the Noise: Revisiting Obesity and the Microbiome (2016) (423)
The Human Gut Microbiome as a Screening Tool for Colorectal Cancer (2014) (418)
Metagenomics for studying unculturable microorganisms: cutting the Gordian knot (2005) (396)
Integration of Microbial Ecology and Statistics: a Test To Compare Gene Libraries (2004) (365)
The Effects of Alignment Quality, Distance Calculation Method, Sequence Filtering, and Region on the Analysis of 16S rRNA Gene-Based Studies (2010) (350)
A High-Throughput DNA Sequence Aligner for Microbial Ecology Studies (2009) (296)
Introducing SONS, a Tool for Operational Taxonomic Unit-Based Comparisons of Microbial Community Memberships and Structures (2006) (291)
OptiClust, an Improved Method for Assigning Amplicon-Based Sequence Data to Operational Taxonomic Units (2017) (289)
Evaluation of 16S rDNA-Based Community Profiling for Human Microbiome Research (2012) (282)
Microbiome Data Distinguish Patients with Clostridium difficile Infection and Non-C. difficile-Associated Diarrhea from Healthy Controls (2014) (263)
Microbiota-based model improves the sensitivity of fecal immunochemical test for detecting colonic lesions (2016) (236)
The interplay between microbiome dynamics and pathogen dynamics in a murine model of Clostridium difficile Infection (2011) (233)
Structure of the gut microbiome following colonization with human feces determines colonic tumor burden (2014) (228)
De novo clustering methods outperform reference-based methods for assigning 16S rRNA gene sequences to operational taxonomic units (2015) (227)
Novelty and Uniqueness Patterns of Rare Members of the Soil Biosphere (2008) (219)
NLRP6 Protects Il10-/- Mice from Colitis by Limiting Colonization of Akkermansia muciniphila. (2017) (217)
Intracellular Screen To Identify Metagenomic Clones That Induce or Inhibit a Quorum-Sensing Biosensor (2005) (214)
Antibiotic-Induced Alterations of the Murine Gut Microbiota and Subsequent Effects on Colonization Resistance against Clostridium difficile (2015) (213)
Evaluating different approaches that test whether microbial communities have the same structure (2008) (199)
Changes in cystic fibrosis airway microbiota at pulmonary exacerbation. (2013) (196)
Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system (2016) (188)
Mathematical modeling of primary succession of murine intestinal microbiota (2013) (170)
Bacteria Associated with the Guts of Two Wood-Boring Beetles: Anoplophora glabripennis and Saperda vestita (Cerambycidae) (2006) (144)
Diagnostic Potential and Interactive Dynamics of the Colorectal Cancer Virome (2018) (144)
Identifying and Overcoming Threats to Reproducibility, Replicability, Robustness, and Generalizability in Microbiome Research (2018) (139)
The metatranscriptome of a deep-sea hydrothermal plume is dominated by water column methanotrophs and lithotrophs (2012) (138)
The daily dynamics of cystic fibrosis airway microbiota during clinical stability and at exacerbation (2015) (128)
Dynamics and Establishment of Clostridium difficile Infection in the Murine Gastrointestinal Tract (2014) (127)
Robustness of the Bacterial Community in the Cabbage White Butterfly Larval Midgut (2009) (126)
What is the extent of prokaryotic diversity? (2006) (119)
Introducing TreeClimber, a Test To Compare Microbial Community Structures (2006) (119)
Metabolic and Community Synergy of Oral Bacteria in Colorectal Cancer (2016) (119)
Status of the Archaeal and Bacterial Census: an Update (2016) (118)
A statistical toolbox for metagenomics: assessing functional diversity in microbial communities (2008) (114)
Multicenter Comparison of Lung and Oral Microbiomes of HIV-infected and HIV-uninfected Individuals. (2015) (113)
Stabilization of the murine gut microbiome following weaning (2012) (111)
Clostridium difficile Colonizes Alternative Nutrient Niches during Infection across Distinct Murine Gut Microbiomes (2017) (107)
Characterization of Gut-Associated Bacteria in Larvae and Adults of the Southern Pine Beetle, Dendroctonus frontalis Zimmermann (2006) (103)
Manipulation of the Gut Microbiota Reveals Role in Colon Tumorigenesis (2015) (97)
Gut Microbiota of an Invasive Subcortical Beetle, Agrilus planipennis Fairmaire, Across Various Life Stages (2008) (97)
Reintroducing mothur: 10 Years Later (2019) (97)
Tracking temporal changes of bacterial community fingerprints during the initial stages of composting. (2003) (96)
The dynamics of a family’s gut microbiota reveal variations on a theme (2014) (95)
Fecal Microbiota Signatures Are Associated with Response to Ustekinumab Therapy among Crohn’s Disease Patients (2018) (85)
Bioinformatics for the Human Microbiome Project (2012) (84)
Reporting guidelines for human microbiome research: the STORMS checklist (2021) (82)
Psychrotrophic strain of Janthinobacterium lividum from a cold Alaskan soil produces prodigiosin. (2010) (81)
The Impact of DNA Polymerase and Number of Rounds of Amplification in PCR on 16S rRNA Gene Sequence Data (2019) (80)
Gut Microbiota Modulate CD8 T Cell Responses to Influence Colitis-Associated Tumorigenesis. (2020) (74)
Molecular characterization of fungal community dynamics in the initial stages of composting. (2005) (72)
Composition of the bacterial community in the gut of the pine engraver, Ips pini (Say) (Coloptera) colonizing red pine (2007) (65)
Clostridium difficile Alters the Structure and Metabolism of Distinct Cecal Microbiomes during Initial Infection To Promote Sustained Colonization (2018) (65)
Secondary structure improves OTU assignments of 16S rRNA gene sequences (2012) (63)
A Framework for Effective Application of Machine Learning to Microbiome-Based Classification Problems (2020) (60)
Impact of Enhanced Staphylococcus DNA Extraction on Microbial Community Measures in Cystic Fibrosis Sputum (2012) (59)
Intra- and Interindividual Variations Mask Interspecies Variation in the Microbiota of Sympatric Peromyscus Populations (2014) (49)
Amplicon Sequence Variants Artificially Split Bacterial Genomes into Separate Clusters (2021) (49)
Spatial Variation of the Native Colon Microbiota in Healthy Adults (2017) (45)
The Glucoamylase Inhibitor Acarbose Has a Diet-Dependent and Reversible Effect on the Murine Gut Microbiome (2019) (45)
Leveraging Existing 16S rRNA Gene Surveys To Identify Reproducible Biomarkers in Individuals with Colorectal Tumors (2018) (45)
Application of a Database-Independent Approach To Assess the Quality of Operational Taxonomic Unit Picking Methods (2016) (44)
Toward unrestricted use of public genomic data (2019) (40)
Normalization of the microbiota in patients after treatment for colonic lesions (2017) (40)
Quantifying bacterial population dynamics in compost using 16S rRNA gene probes (2004) (40)
Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis (2013) (38)
Species Richness Taxonomic Units and Estimating Program for Defining Operational Introducing DOTUR , a Computer (2005) (38)
The last word: books as a statistical metaphor for microbial communities. (2007) (37)
DNA from fecal immunochemical test can replace stool for detection of colonic lesions using a microbiota-based model (2016) (37)
Microbial community function and biomarker discovery in the human microbiome (2011) (36)
Nonsteroidal Anti-inflammatory Drugs Alter the Microbiota and Exacerbate Clostridium difficile Colitis while Dysregulating the Inflammatory Response (2018) (34)
Biogeography and environmental conditions shape bacteriophage-bacteria networks across the human microbiome (2017) (32)
Erratum: NLRP6 Protects Il10−/− Mice from Colitis by Limiting Colonization of Akkermansia muciniphila (Cell Reports (2017) 19(4) (733–745) (S2211124717304576) (10.1016/j.celrep.2017.03.080)) (2017) (32)
Effect of Sample Storage Conditions on Culture-Independent Bacterial Community Measures in Cystic Fibrosis Sputum Specimens (2011) (29)
The use of the analysis of variance to assess the influence of mixing during composting (2000) (27)
Microbiology: An integrated view of the skin microbiome (2014) (26)
Fecal Short-Chain Fatty Acids Are Not Predictive of Colonic Tumor Status and Cannot Be Predicted Based on Bacterial Community Structure (2019) (24)
Effective application of machine learning to microbiome-based classification problems (2019) (23)
Measurement of process performance and variability in inoculated composting reactors using ANOVA and power analysis (2000) (22)
mikropml: User-Friendly R Package for Supervised Machine Learning Pipelines (2021) (17)
NLRP6 Protects Il10-/- Mice from Colitis by Limiting Colonization of Akkermansia muciniphila. (2017) (17)
Microbial Characterization of Qatari Barchan Sand Dunes (2016) (17)
Protection from Lethal Clostridioides difficile Infection via Intraspecies Competition for Cogerminant (2021) (16)
Women Are Underrepresented and Receive Differential Outcomes at ASM Journals: a Six-Year Retrospective Analysis (2020) (15)
Support Science by Publishing in Scientific Society Journals (2017) (12)
The ASM Journals Committee Values the Contributions of Black Microbiologists (2020) (12)
MOLECULAR ASSESSMENT OF INOCULUM EFFICACY AND PROCESS REPRODUCIBILITY IN COMPOSTING USING ARISA (2003) (11)
Microbiota-based model improves the sensitivity of fecal immunochemical test for detecting colonic lesions (2016) (11)
The Initial Gut Microbiota and Response to Antibiotic Perturbation Influence Clostridioides difficile Clearance in Mice (2020) (10)
Removal of rare amplicon sequence variants from 16S rRNA gene sequence surveys biases the interpretation of community structure data (2020) (10)
Low prevalence of Clostridium septicum fecal carriage in an adult population. (2015) (10)
OptiClust: Improved method for assigning amplicon-based sequence data to operational taxonomic units (2016) (9)
Association of bacterial community types, functional microbial processes and lung disease in cystic fibrosis airways (2021) (9)
ASSESSMENT AND IMPROVEMENT OF PROCESS VARIABLE REPRODUCIBILITY IN COMPOSTING REACTORS (2000) (8)
Preprinting Microbiology (2017) (8)
Erratum for Sze and Schloss, “Looking for a Signal in the Noise: Revisiting Obesity and the Microbiome” (2017) (8)
Clearance of Clostridioides difficile Colonization Is Associated with Antibiotic-Specific Bacterial Changes (2020) (7)
Structures Community Memberships and Comparisons of Microbial Operational Taxonomic Unit-Based Introducing SONS , a Tool for (2006) (7)
Normalization of the microbiota in patients after treatment for colonic lesions (2017) (6)
An Osmotic Laxative Renders Mice Susceptible to Prolonged Clostridioides difficile Colonization and Hinders Clearance (2021) (6)
Viral and Bacterial Communities of Colorectal Cancer (2017) (6)
The Diagnostic Potential & Interactive Dynamics of the Colorectal Cancer Virome (2017) (5)
Ten simple rules to increase computational skills among biologists with Code Clubs (2020) (5)
A Goldilocks Principle for the Gut Microbiome: Taxonomic Resolution Matters for Microbiome-Based Classification of Colorectal Cancer (2021) (5)
The proton pump inhibitor omeprazole does not promote Clostridium difficile colonization in a murine model (2019) (4)
Consent insufficient for data release—Response (2019) (4)
Microbial community function and biomarker discovery in the human microbiome (2011) (4)
Erratum for Sze and Schloss, “Leveraging Existing 16S rRNA Gene Surveys To Identify Reproducible Biomarkers in Individuals with Colorectal Tumors” (2018) (4)
The Riffomonas Reproducible Research Tutorial Series (2018) (4)
The Gut Bacterial Community Potentiates Clostridioides difficile Infection Severity (2022) (4)
Coding-Complete RNA Virus Genomes Assembled from Murine Cecal Metatranscriptomes (2020) (3)
Metabolomics and the Microbiome: Characterizing Molecular Diversity in Complex Microbial Communities (2020) (3)
The status of the microbial census: an update (2016) (3)
The ASM Journals Committee Values the Contributions of Black Microbiologists (2020) (3)
The Proton Pump Inhibitor Omeprazole Does Not Promote Clostridioides difficile Colonization in a Murine Model (2019) (2)
Mo1796 The Gut Microbiome Differentiates Clinical Phenotypes in Moderate to Severe Crohn's Disease: Results From the CERTIFI Study (2015) (2)
Top 10 research priorities in colorectal cancer: results from the Colorectal Cancer Priority-Setting Partnership (2022) (2)
OptiFit: an Improved Method for Fitting Amplicon Sequences to Existing OTUs (2021) (2)
Nurturing the microbiome field. (2015) (2)
and Estimating Species Richness for Defining Operational Taxonomic Units Introducing DOTUR , a Computer Program (2005) (2)
Clostridium difficile differentially alters the structure and metabolism of distinct cecal microbiomes to promote persistent colonization during infection (2017) (2)
Intestinal Inflammation Reversibly Alters the Microbiota to Drive Susceptibility to Clostridioides difficile Colonization in a Mouse Model of Colitis (2022) (1)
DNA from fecal immunochemical test can replace stool for microbiota-based colorectal cancer screening (2016) (1)
Gut bacteria of bark and wood boring beetles (2007) (1)
In Defense of an Academic Career in Microbiology (2018) (1)
The ASM Journals Committee Values the Contributions of Black Microbiologists (2020) (1)
The dynamics of a family’s gut microbiota reveal variations on a theme (2014) (1)
Developing and deploying an integrated workshop curriculum teaching computational skills for reproducible research (2021) (1)
Protection from lethal Clostridioides difficile infection via intraspecies competition for co-germinant (2021) (1)
Diluted Fecal Community Transplant Restores Clostridioides difficile Colonization Resistance to Antibiotic-Perturbed Murine Communities (2022) (1)
Application of database-independent approach to assess the quality of OTU picking methods (2016) (1)
The ASM Journals Committee Values the Contributions of Black Microbiologists (2020) (1)
The Fecal Microbiome as a Tool for Monitoring and Predicting Response Outcomes in Ustekinumab-Treated, Anti-TNFî‘ Refractory Crohn’s Disease Patients: Results from the Certifi Study (2017) (1)
Erratum for Schloss et al., “Support Science by Publishing in Scientific Society Journals” (2017) (1)
The ASM Journals Committee Values the Contributions of Black Microbiologists (2020) (1)
Su562 DOES MUCOSAL AKKERMANSIA ABUNDANCE PREDICT OMEGA FATTY ACIDS AND PGE2 PRODUCTION AFTER DIETARY INTERVENTION? (2021) (0)
The ASM Journals Committee Values the Contributions of Black Microbiologists (2020) (0)
Streamlined implementation of a machine learning model to classify screen relevant neoplasia using reference-based OTU clustering (2022) (0)
Erratum for Baxter et al., “The Glucoamylase Inhibitor Acarbose Has a Diet-Dependent and Reversible Effect on the Murine Gut Microbiome” (2019) (0)
The ASM Journals Committee Values the Contributions of Black Microbiologists (2020) (0)
The Decision To Publish Gutierrez-Alvarez et al., “Middle East Respiratory Syndrome Coronavirus Gene 5 Modulates Pathogenesis in Mice” (2020) (0)
Characterizing changes in the intestinal microflora: Relation to exposure to enteral nutrients (2011) (0)
The ASM Journals Committee Values the Contributions of Black Microbiologists (2020) (0)
DOP053 The fecal microbiome as a tool for monitoring and predicting response outcomes in ustekinumab-treated, anti-TNFα refractory Crohn's disease patients: results from the CERTIFI study. (2017) (0)
The ASM Journals Committee Values the Contributions of Black Microbiologists (2020) (0)
The Riffomonas YouTube Channel: An Educational Resource To Foster Reproducible Research Practices (2023) (0)
The ASM Journals Committee Values the Contributions of Black Microbiologists (2020) (0)
The initial gut microbiota and response to antibiotic perturbation influence Clostridioides difficile colonization in mice (2020) (0)
Erratum for Hagan et al., “Women Are Underrepresented and Receive Differential Outcomes at ASM Journals: a Six-Year Retrospective Analysis” (2021) (0)
The ASM Journals Committee Values the Contributions of Black Microbiologists (2020) (0)
Sociality does not predict oral microbiome composition or diversity in free-living prairie voles (2023) (0)
Tu1540: COMPARING MICROBIOME COMPOSITION IN LYNCH SYNDROME PATIENTS WITH AND WITHOUT A HISTORY OF COLORECTAL NEOPLASIA (2022) (0)
DNA from fecal immunochemical test can replace stool for detection of colonic lesions using a microbiota-based model (2016) (0)
The ASM Journals Committee Values the Contributions of Black Microbiologists (2020) (0)
The gut microbiome can contribute to colon tumor susceptibility via an effect on CD8+ T cell responses (2019) (0)
Assigning 16 S rRNA gene sequences to operational taxonomic units ( OTUs ) allows microbial (2016) (0)
The ASM Journals Committee Values the Contributions of Black Microbiologists (2020) (0)
Intra-and inter-individual variation masks inter-species variation 1 in the microbiota of sympatric Peromyscus populations 2 3 Running title : Variation in the Peromyscus microbiota 4 5 (2014) (0)
Clones That Induce or Inhibit a Quorum-Sensing 2005 . Intracellular Screen To Identify Metagenomic (2005) (0)
StructuresMemberships and Comparisons of Microbial Operational Taxonomic Unit-Based Introducing SONS, a Tool for (2010) (0)
User-Friendly R Package for Supervised Machine Learning Pipelines [R package mikropml version 0.0.2] (2020) (0)
Jo Handelsman: Adviser, Teacher, Role Model, Friend (2018) (0)
Machine learning classification by fitting amplicon sequences to existing OTUs (2023) (0)
54101 Characterizing Microbiota Features of Clostridioides difficile Infections (2021) (0)
The ASM Journals Committee Values the Contributions of Black Microbiologists (2020) (0)
Nlrp6 limits inflamation in mouse colon by regulating microbiota (2016) (0)
Running title : Introducing mothur Appropriate Section : Methods (2009) (0)
The ASM Journals Committee Values the Contributions of Black Microbiologists (2020) (0)
The effect of treatment on the microbiota of patients diagnosed with colonic lesions (2017) (0)
Structure of the gut microbiome following colonization with human feces determines colonic tumor burden (2014) (0)
Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis (2013) (0)
Explaining Order among Those Who Share Positions in the Author Byline (2019) (0)
The daily dynamics of cystic fibrosis airway microbiota during clinical stability and at exacerbation (2015) (0)

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What Schools Are Affiliated With Patrick D. Schloss?

Patrick D. Schloss is affiliated with the following schools:

University of Michigan
University of Massachusetts

Patrick D. Schloss's Academic­Influence.com Rankings

Why Is Patrick D. Schloss Influential?

Patrick D. Schloss's Published Works

Published Works

What Schools Are Affiliated With Patrick D. Schloss?

Patrick D. Schloss's AcademicInfluence.com Rankings