Paul Babitzke
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American biology professor
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Biology
Paul Babitzke's Degrees
- PhD Biology Stanford University
- Masters Biology Stanford University
- Bachelors Biology Stanford University
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Why Is Paul Babitzke Influential?
(Suggest an Edit or Addition)According to Wikipedia, Paul Babitzke is a professor of biochemistry and molecular biology and director of the Center for RNA Molecular Biology at Pennsylvania State University. Education Paul Babitzke obtained his B.A. in biomedical science from St. Cloud State University in Minnesota in 1994. He earned his Ph.D. in genetics from the University of Georgia in 1991.
Paul Babitzke's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- New method for generating deletions and gene replacements in Escherichia coli (1989) (710)
- CsrB sRNA family: sequestration of RNA-binding regulatory proteins. (2007) (409)
- Positive regulation of motility and flhDC expression by the RNA‐binding protein CsrA of Escherichia coli (2001) (401)
- A novel sRNA component of the carbon storage regulatory system of Escherichia coli (2003) (352)
- CsrA post‐transcriptionally represses pgaABCD, responsible for synthesis of a biofilm polysaccharide adhesin of Escherichia coli (2005) (300)
- Regulatory Circuitry of the CsrA/CsrB and BarA/UvrY Systems of Escherichia coli (2002) (277)
- CsrA regulates glycogen biosynthesis by preventing translation of glgC in Escherichia coli (2002) (276)
- Identification of a novel regulatory protein (CsrD) that targets the global regulatory RNAs CsrB and CsrC for degradation by RNase E. (2006) (272)
- Post-transcriptional regulation on a global scale: form and function of Csr/Rsm systems. (2013) (268)
- Regulation of Bacterial Virulence by Csr (Rsm) Systems (2015) (252)
- RNA sequence and secondary structure participate in high-affinity CsrA-RNA interaction. (2005) (244)
- The Ams (altered mRNA stability) protein and ribonuclease E are encoded by the same structural gene of Escherichia coli. (1991) (201)
- CsrA Regulates Translation of the Escherichia coli Carbon Starvation Gene, cstA, by Blocking Ribosome Access to the cstA Transcript (2003) (194)
- Circuitry linking the Csr and stringent response global regulatory systems (2011) (169)
- CsrA activates flhDC expression by protecting flhDC mRNA from RNase E‐mediated cleavage (2013) (157)
- Complexity in regulation of tryptophan biosynthesis in Bacillus subtilis. (2005) (148)
- Integration of a complex regulatory cascade involving the SirA/BarA and Csr global regulatory systems that controls expression of the Salmonella SPI‐1 and SPI‐2 virulence regulons through HilD (2011) (134)
- Reconstitution of Bacillus subtilis trp attenuation in vitro with TRAP, the trp RNA-binding attenuation protein. (1993) (131)
- CsrA Inhibits Translation Initiation of Escherichia coli hfq by Binding to a Single Site Overlapping the Shine-Dalgarno Sequence (2007) (128)
- Analysis of mRNA decay and rRNA processing in Escherichia coli multiple mutants carrying a deletion in RNase III (1993) (127)
- Global role of the bacterial post-transcriptional regulator CsrA revealed by integrated transcriptomics (2017) (116)
- Regulation of translation initiation by RNA binding proteins. (2009) (111)
- Comprehensive Alanine-scanning Mutagenesis of Escherichia coli CsrA Defines Two Subdomains of Critical Functional Importance* (2006) (111)
- TRAP, the trp RNA-binding attenuation protein of Bacillus subtilis, is a multisubunit complex that appears to recognize G/UAG repeats in the trpEDCFBA and trpG transcripts. (1994) (110)
- Molecular geometry of CsrA (RsmA) binding to RNA and its implications for regulated expression. (2009) (105)
- Global Regulation by CsrA and Its RNA Antagonists. (2018) (100)
- trp RNA-binding attenuation protein (TRAP)-trp leader RNA interactions mediate translational as well as transcriptional regulation of the Bacillus subtilis trp operon (1995) (99)
- Regulatory Interactions of Csr Components: the RNA Binding Protein CsrA Activates csrB Transcription inEscherichia coli (2001) (98)
- CsrA of Bacillus subtilis regulates translation initiation of the gene encoding the flagellin protein (hag) by blocking ribosome binding (2007) (95)
- NusA-stimulated RNA polymerase pausing and termination participates in the Bacillus subtilis trp operon attenuation mechanism in vitro (2002) (87)
- trp RNA-binding Attenuation Protein-mediated Long Distance RNA Refolding Regulates Translation of trpE inBacillus subtilis * (1998) (85)
- A Genome-Wide Analysis of Small Regulatory RNAs in the Human Pathogen Group A Streptococcus (2009) (84)
- Regulation of tryptophan biosynthesis: Trp‐ing the TRAP or how Bacillus subtilis reinvented the wheel (1997) (84)
- CsrA–FliW interaction governs flagellin homeostasis and a checkpoint on flagellar morphogenesis in Bacillus subtilis (2011) (83)
- Posttranscription Initiation Control of Tryptophan Metabolism in Bacillus subtilis by thetrp RNA-Binding Attenuation Protein (TRAP), anti-TRAP, and RNA Structure (2001) (81)
- Mechanism of hcnA mRNA recognition in the Gac/Rsm signal transduction pathway of Pseudomonas fluorescens (2007) (80)
- Complex regulation of the global regulatory gene csrA: CsrA‐mediated translational repression, transcription from five promoters by Eσ70 and EσS, and indirect transcriptional activation by CsrA (2011) (76)
- TRAP, the trp RNA-binding attenuation protein of Bacillus subtilis, is a toroid-shaped molecule that binds transcripts containing GAG or UAG repeats separated by two nucleotides. (1995) (75)
- Regulation of transcription attenuation and translation initiation by allosteric control of an RNA-binding protein: the Bacillus subtilis TRAP protein. (2004) (71)
- The trp RNA-binding attenuation protein regulates TrpG synthesis by binding to the trpG ribosome binding site of Bacillus subtilis (1997) (68)
- The trp RNA-Binding Attenuation Protein of Bacillus subtilis Regulates Translation of the Tryptophan Transport Gene trpP (yhaG) by Blocking Ribosome Binding (2004) (65)
- NusA-dependent transcription termination prevents misregulation of global gene expression (2016) (62)
- Dual posttranscriptional regulation via a cofactor-responsive mRNA leader. (2013) (59)
- Function of the Bacillus subtilis transcription elongation factor NusG in hairpin-dependent RNA polymerase pausing in the trp leader (2008) (58)
- Effects of Mutations in the l-Tryptophan Binding Pocket of the trp RNA-binding Attenuation Protein ofBacillus subtilis * (2000) (57)
- Interaction of the trp RNA-Binding attenuation protein (TRAP) of Bacillus subtilis with RNA: effects of the number of GAG repeats, the nucleotides separating adjacent repeats, and RNA secondary structure (1996) (56)
- Translational Repression of NhaR, a Novel Pathway for Multi-Tier Regulation of Biofilm Circuitry by CsrA (2011) (55)
- The mtrAB operon of Bacillus subtilis encodes GTP cyclohydrolase I (MtrA), an enzyme involved in folic acid biosynthesis, and MtrB, a regulator of tryptophan biosynthesis (1992) (52)
- NusG Is a Sequence-specific RNA Polymerase Pause Factor That Binds to the Non-template DNA within the Paused Transcription Bubble* (2016) (51)
- Myotonic dystrophy: molecular windows on a complex etiology. (1998) (51)
- Regulatory Interactions of Csr Components: the RNA Binding Protein CsrA Activates csrB Transcription in Escherichia coli (2002) (51)
- CsrA Represses Translation of sdiA, Which Encodes the N-Acylhomoserine-l-Lactone Receptor of Escherichia coli, by Binding Exclusively within the Coding Region of sdiA mRNA (2011) (50)
- Global effects of the DEAD‐box RNA helicase DeaD (CsdA) on gene expression over a broad range of temperatures (2014) (49)
- Regulation of CsrB/C sRNA decay by EIIAGlc of the phosphoenolpyruvate: carbohydrate phosphotransferase system (2016) (48)
- FliW and FliS Function Independently To Control Cytoplasmic Flagellin Levels in Bacillus subtilis (2012) (47)
- The Anti-trp RNA-binding Attenuation Protein (Anti-TRAP), AT, Recognizes the Tryptophan-activated RNA Binding Domain of the TRAP Regulatory Protein* (2002) (47)
- Recycling of a regulatory protein by degradation of the RNA to which it binds. (2004) (44)
- Expression of the Bacillus subtilis trpEDCFBAOperon Is Influenced by Translational Coupling and Rho Termination Factor (2001) (44)
- Antagonistic control of the turnover pathway for the global regulatory sRNA CsrB by the CsrA and CsrD proteins (2016) (42)
- RNA polymerase pausing regulates translation initiation by providing additional time for TRAP-RNA interaction. (2006) (40)
- NusG/Spt5: are there common functions of this ubiquitous transcription elongation factor? (2014) (40)
- Structural Features of L-Tryptophan Required for Activation of TRAP, the trp RNA-binding Attenuation Protein of Bacillus subtilis(*) (1995) (38)
- Mechanism of NusG‐stimulated pausing, hairpin‐dependent pause site selection and intrinsic termination at overlapping pause and termination sites in the Bacillus subtilis trp leader (2010) (37)
- Circuitry Linking the Catabolite Repression and Csr Global Regulatory Systems of Escherichia coli (2016) (36)
- Gel mobility shift assays to detect protein-RNA interactions. (2012) (32)
- The Escherichia coli mrsC Gene Is Required for Cell Growth and mRNA Decay (1998) (32)
- Posttranscription Initiation Control of Gene Expression Mediated by Bacterial RNA-Binding Proteins. (2019) (31)
- A 5′ RNA Stem-Loop Participates in the Transcription Attenuation Mechanism That Controls Expression of theBacillus subtilis trpEDCFBA Operon (1999) (30)
- Diverse Mechanisms and Circuitry for Global Regulation by the RNA-Binding Protein CsrA (2020) (28)
- trp RNA-Binding Attenuation Protein-5′ Stem-Loop RNA Interaction Is Required for Proper Transcription Attenuation Control of the Bacillus subtilis trpEDCFBAOperon (2000) (28)
- Glyoxals as in vivo RNA structural probes of guanine base-pairing (2018) (27)
- NusG controls transcription pausing and RNA polymerase translocation throughout the Bacillus subtilis genome (2020) (26)
- The trp RNA‐binding attenuation protein (TRAP) of Bacillus subtilis regulates translation initiation of ycbK, a gene encoding a putative efflux protein, by blocking ribosome binding (2006) (26)
- Transcription attenuation. (2002) (25)
- CsrA Participates in a PNPase Autoregulatory Mechanism by Selectively Repressing Translation of pnp Transcripts That Have Been Previously Processed by RNase III and PNPase (2015) (25)
- FliW antagonizes CsrA RNA binding by a noncompetitive allosteric mechanism (2016) (24)
- In vivo RNA structural probing of uracil and guanine base-pairing by 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide (EDC) (2018) (24)
- A Mg2+-dependent RNA tertiary structure forms in the Bacillus subtilis trp operon leader transcript and appears to interfere with trpE translation control by inhibiting TRAP binding. (2003) (23)
- Aromatic Amino Acid Metabolism in Bacillus subtilis (2002) (23)
- Translational Repression of the RpoS Antiadapter IraD by CsrA Is Mediated via Translational Coupling to a Short Upstream Open Reading Frame (2017) (22)
- Regulation of Iron Storage by CsrA Supports Exponential Growth of Escherichia coli (2019) (20)
- Role of RNA structure in transcription attenuation in Bacillus subtilis: the trpEDCFBA operon as a model system. (2003) (19)
- csrR, a Paralog and Direct Target of CsrA, Promotes Legionella pneumophila Resilience in Water (2015) (19)
- Ribosomal protein L10(L12)4 autoregulates expression of the Bacillus subtilis rplJL operon by a transcription attenuation mechanism (2015) (17)
- TRAP-5' stem loop interaction increases the efficiency of transcription termination in the Bacillus subtilis trpEDCFBA operon leader region. (2007) (16)
- Translation Control of trpG from Transcripts Originating from the Folate Operon Promoter of Bacillus subtilis Is Influenced by Translation-Mediated Displacement of Bound TRAP, While Translation Control of Transcripts Originating from a Newly Identified trpG Promoter Is Not (2006) (15)
- Circuitry Linking the Global Csr- and σE-Dependent Cell Envelope Stress Response Systems (2017) (15)
- NusG is an intrinsic transcription termination factor that stimulates motility and coordinates gene expression with NusA (2021) (13)
- Structure-seq2 probing of RNA structure upon amino acid starvation reveals both known and novel RNA switches in Bacillus subtilis (2020) (11)
- NusG-Dependent RNA Polymerase Pausing and Tylosin-Dependent Ribosome Stalling Are Required for Tylosin Resistance by Inducing 23S rRNA Methylation in Bacillus subtilis (2019) (11)
- Examination of Csr regulatory circuitry using epistasis analysis with RNA-seq (Epi-seq) confirms that CsrD affects gene expression via CsrA, CsrB and CsrC (2018) (10)
- Molecular basis of TRAP-5'SL RNA interaction in the Bacillus subtilis trp operon transcription attenuation mechanism. (2008) (10)
- Modular Organization of the NusA- and NusG-Stimulated RNA Polymerase Pause Signal That Participates in the Bacillus subtilis trp Operon Attenuation Mechanism (2017) (10)
- CsrA-Mediated Translational Activation of ymdA Expression in Escherichia coli (2020) (9)
- Toxin MqsR cleaves single‐stranded mRNA with various 5' ends (2016) (9)
- NusG-dependent RNA polymerase pausing is a frequent function of this universally conserved transcription elongation factor (2020) (9)
- Expression of Bacillus subtilis ABCF antibiotic resistance factor VmlR is regulated by RNA polymerase pausing, transcription attenuation, translation attenuation and (p)ppGpp (2022) (8)
- Gene replacement method for determining conditions in which Bacillus subtilis genes are essential or dispensable for cell viability (2004) (8)
- An incoherent feedforward loop formed by SirA/BarA, HilE and HilD is involved in controlling the growth cost of virulence factor expression by Salmonella Typhimurium (2021) (7)
- CsrA regulation via binding to the base‐pairing small RNA Spot 42 (2021) (6)
- Comprehensive transcription terminator atlas for Bacillus subtilis (2022) (6)
- Phylogenetic conservation of RNA secondary and tertiary structure in the trpEDCFBA operon leader transcript in Bacillus. (2003) (5)
- Transcriptome-Wide Effects of NusA on RNA Polymerase Pausing in Bacillus subtilis (2022) (4)
- Noncanonical Translation Initiation Comes of Age (2017) (4)
- Csr (Rsm) System and Its Overlap and Interplay with Cyclic Di-GMP Regulatory Systems (2010) (4)
- Factor-stimulated intrinsic termination: getting by with a little help from some friends (2022) (2)
- Attenuation to Control Gene Expression (2008) (1)
- Correction: Corrigendum: NusA-dependent transcription termination prevents misregulation of global gene expression (2016) (1)
- Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase (2022) (1)
- NusG is an intrinsic transcription termination factor that stimulates motility and coordinates global gene expression with NusA (2020) (1)
- Analysis of mRNA Decay Intermediates in Bacillus subtilis 3′ Exoribonuclease and RNA Helicase Mutant Strains (2022) (1)
- Eliminating blurry bands in gels with a simple cost-effective repair to the gel cassette (2016) (1)
- Author response: NusG is an intrinsic transcription termination factor that stimulates motility and coordinates gene expression with NusA (1)
- Referees 1998 (1998) (0)
- Attenuation Of Transcription (2002) (0)
- ThemtrABOperonofBacillus subtilis Encodes GTPCyclohydrolase I (MtrA), an EnzymeInvolved inFolic AcidBiosynthesis, andMtrB,a Regulator ofTryptophan Biosynthesis (1992) (0)
- Global role of the bacterial post-transcriptional regulator CsrA revealed by integrated transcriptomics (2017) (0)
- Toeprint Assays for Detecting RNA Structure and Protein-RNA Interactions. (2022) (0)
- CsrA Participates in a PNPase Autoregulatory Mechanism by Selectively Repressing Translation of <italic toggle='yes'>pnp</italic> Transcripts That Have Been Previously Processed by RNase III and PNPase (2015) (0)
- Erratum: Regulatory interactions of Csr components: The RNA binding protein CsrA activates csrB transcription in Escherichia coli (Journal of Bacteriology (2001) 183:20 (6017-6027)) (2002) (0)
- Analysis ofmRNA DecayandrRNAProcessing in Escherichia coli Multiple Mutants Carrying aDeletion in (1993) (0)
- THE MOLECULAR EVOLUTION OF THE ARYL HYDROCARBON RECEPTOR AND THE EFFECTS OF IFNγ ON TRYPTOPHAN METABOLISM IN ORAL SQUAMOUS CARCINOMA CELLS (2018) (0)
- Examination of Csr regulatory circuitry using epistasis analysis with RNA-seq (Epi-seq) confirms that CsrD affects gene expression via CsrA, CsrB and CsrC (2018) (0)
- Antitermination Control of Gene Expression (2002) (0)
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