Philippe Lemey
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Biology
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(Suggest an Edit or Addition)Philippe Lemey's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10 (2018) (1923)
- RDP3: a flexible and fast computer program for analyzing recombination (2010) (1669)
- Bayesian Phylogeography Finds Its Roots (2009) (1452)
- Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty. (2012) (951)
- Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil (2021) (942)
- Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic (2020) (713)
- The early spread and epidemic ignition of HIV-1 in human populations (2014) (585)
- Phylogeography takes a relaxed random walk in continuous space and time. (2010) (565)
- Accurate model selection of relaxed molecular clocks in bayesian phylogenetics. (2012) (539)
- Mapping the Origins and Expansion of the Indo-European Language Family (2012) (522)
- The Phylogenetic Handbook: A Practical Approach to Phylogenetic Analysis and Hypothesis Testing (2009) (512)
- Evolution and epidemic spread of SARS-CoV-2 in Brazil (2020) (459)
- SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics (2011) (458)
- Complete Genomic Sequence of Human Coronavirus OC43: Molecular Clock Analysis Suggests a Relatively Recent Zoonotic Coronavirus Transmission Event (2005) (456)
- Tracing the origin and history of the HIV-2 epidemic (2003) (413)
- Improving Bayesian population dynamics inference: a coalescent-based model for multiple loci. (2013) (402)
- Global circulation patterns of seasonal influenza viruses vary with antigenic drift (2015) (402)
- The Phylogenetic Handbook: Assessing substitution saturation with DAMBE (2009) (373)
- SpreaD3: Interactive Visualization of Spatiotemporal History and Trait Evolutionary Processes. (2016) (325)
- Virus genomes reveal factors that spread and sustained the Ebola epidemic (2017) (319)
- Distinguishable Epidemics of Multidrug-Resistant Salmonella Typhimurium DT104 in Different Hosts (2013) (312)
- Unifying Viral Genetics and Human Transportation Data to Predict the Global Transmission Dynamics of Human Influenza H3N2 (2014) (289)
- Temporal signal and the phylodynamic threshold of SARS-CoV-2 (2020) (278)
- The emergence of SARS-CoV-2 in Europe and North America (2020) (277)
- Integrating influenza antigenic dynamics with molecular evolution (2013) (275)
- The Spread of Tomato Yellow Leaf Curl Virus from the Middle East to the World (2010) (264)
- The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time (2013) (252)
- Ancient Hybridization and an Irish Origin for the Modern Polar Bear Matriline (2011) (252)
- Phylodynamic analyses of rotavirus genotypes G9 and G12 underscore their potential for swift global spread. (2010) (247)
- Tracking virus outbreaks in the twenty-first century (2018) (246)
- HIV evolutionary dynamics within and among hosts. (2006) (241)
- Genomic and epidemiological monitoring of yellow fever virus transmission potential (2018) (232)
- Ancient DNA analyses exclude humans as the driving force behind late Pleistocene musk ox (Ovibos moschatus) population dynamics (2010) (223)
- Unifying the spatial epidemiology and molecular evolution of emerging epidemics (2012) (217)
- Genetic History of Hepatitis C Virus in East Asia (2008) (207)
- Evolutionary History of the Closely Related Group 2 Coronaviruses: Porcine Hemagglutinating Encephalomyelitis Virus, Bovine Coronavirus, and Human Coronavirus OC43 (2006) (205)
- Evolutionary Dynamics of Human Rotaviruses: Balancing Reassortment with Preferred Genome Constellations (2009) (191)
- Metagenomic sequencing at the epicenter of the Nigeria 2018 Lassa fever outbreak (2019) (183)
- Synonymous Substitution Rates Predict HIV Disease Progression as a Result of Underlying Replication Dynamics (2007) (174)
- Geographic and Temporal Trends in the Molecular Epidemiology and Genetic Mechanisms of Transmitted HIV-1 Drug Resistance: An Individual-Patient- and Sequence-Level Meta-Analysis (2015) (173)
- Genetic Variability and Molecular Evolution of the Human Respiratory Syncytial Virus Subgroup B Attachment G Protein (2005) (155)
- Ancient papillomavirus-host co-speciation in Felidae (2007) (154)
- Phylodynamic Reconstruction Reveals Norovirus GII.4 Epidemic Expansions and their Molecular Determinants (2010) (152)
- 1970s and ‘Patient 0’ HIV-1 genomes illuminate early HIV/AIDS history in North America (2016) (143)
- Phylodynamics and Human-Mediated Dispersal of a Zoonotic Virus (2010) (141)
- The Molecular Population Genetics of HIV-1 Group O (2004) (138)
- The global antigenic diversity of swine influenza A viruses (2016) (138)
- Molecular Evolution and Circulation Patterns of Human Respiratory Syncytial Virus Subgroup A: Positively Selected Sites in the Attachment G Glycoprotein (2004) (135)
- Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy. (2015) (133)
- The mode and tempo of hepatitis C virus evolution within and among hosts (2011) (131)
- U.S. Human Immunodeficiency Virus Type 1 Epidemic: Date of Origin, Population History, and Characterization of Early Strains (2003) (131)
- New Insights into Flavivirus Evolution, Taxonomy and Biogeographic History, Extended by Analysis of Canonical and Alternative Coding Sequences (2015) (128)
- Spatial Dynamics of Human-Origin H1 Influenza A Virus in North American Swine (2011) (128)
- Molecular typing and epidemiology of enteroviruses identified from an outbreak of aseptic meningitis in Belgium during the summer of 2000 (2003) (126)
- Natural selection in the evolution of SARS-CoV-2 in bats created a generalist virus and highly capable human pathogen (2021) (125)
- Simultaneously reconstructing viral cross-species transmission history and identifying the underlying constraints (2013) (124)
- Phylogeography and population dynamics of dengue viruses in the Americas. (2012) (121)
- The emergence and ongoing convergent evolution of the SARS-CoV-2 N501Y lineages (2021) (116)
- Analysing recombination in nucleotide sequences (2011) (115)
- Single Cell Analysis of Lymph Node Tissue from HIV-1 Infected Patients Reveals that the Majority of CD4+ T-cells Contain One HIV-1 DNA Molecule (2013) (113)
- Three roads diverged? Routes to phylogeographic inference. (2010) (112)
- Global migration of influenza A viruses in swine (2015) (111)
- BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics (2019) (111)
- Make the most of your samples: Bayes factor estimators for high-dimensional models of sequence evolution (2013) (110)
- Virus evolution and transmission in an ever more connected world (2015) (106)
- Recombination Confounds the Early Evolutionary History of Human Immunodeficiency Virus Type 1: Subtype G Is a Circulating Recombinant Form (2007) (100)
- Genealogical Working Distributions for Bayesian Model Testing with Phylogenetic Uncertainty. (2016) (96)
- Air Travel Is Associated with Intracontinental Spread of Dengue Virus Serotypes 1–3 in Brazil (2014) (96)
- HIV Rebound Is Predominantly Fueled by Genetically Identical Viral Expansions from Diverse Reservoirs. (2019) (96)
- An integrated map of HIV genome-wide variation from a population perspective (2015) (94)
- Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2 (2020) (94)
- Quantifying Differences in the Tempo of Human Immunodeficiency Virus Type 1 Subtype Evolution (2009) (94)
- SERAPHIM: studying environmental rasters and phylogenetically informed movements (2016) (92)
- The Huanan Seafood Wholesale Market in Wuhan was the early epicenter of the COVID-19 pandemic (2022) (89)
- Investigating the Origin and Spread of Hepatitis C Virus Genotype 5a (2006) (89)
- Emerging Concepts of Data Integration in Pathogen Phylodynamics (2016) (86)
- The emergence and ongoing convergent evolution of the N501Y lineages coincides with a major global shift in the SARS-CoV-2 selective landscape (2021) (86)
- Molecular dating of human-to-bovid host jumps by Staphylococcus aureus reveals an association with the spread of domestication (2012) (85)
- The Comparative Genomics of Human Respiratory Syncytial Virus Subgroups A and B: Genetic Variability and Molecular Evolutionary Dynamics (2013) (85)
- Untangling introductions and persistence in COVID-19 resurgence in Europe (2021) (85)
- Genetic Variability among Complete Human Respiratory Syncytial Virus Subgroup A Genomes: Bridging Molecular Evolutionary Dynamics and Epidemiology (2012) (81)
- Toward a quantitative understanding of viral phylogeography. (2011) (81)
- The Genealogical Population Dynamics of HIV-1 in a Large Transmission Chain: Bridging within and among Host Evolutionary Rates (2014) (81)
- Reconstructing the initial global spread of a human influenza pandemic: A Bayesian spatial-temporal model for the global spread of H1N1pdm. (2009) (80)
- Rates of Viral Evolution Are Linked to Host Geography in Bat Rabies (2012) (80)
- Phylogeography of Dengue Virus Serotype 4, Brazil, 2010–2011 (2012) (79)
- Bayesian evolutionary model testing in the phylogenomics era: matching model complexity with computational efficiency (2013) (78)
- Molecular Footprint of Drug-Selective Pressure in a Human Immunodeficiency Virus Transmission Chain (2005) (77)
- A counting renaissance: combining stochastic mapping and empirical Bayes to quickly detect amino acid sites under positive selection (2012) (76)
- Circulation of genetically distinct contemporary human coronavirus OC43 strains (2005) (76)
- High GUD Incidence in the Early 20th Century Created a Particularly Permissive Time Window for the Origin and Initial Spread of Epidemic HIV Strains (2010) (72)
- Distinct Effects of T-705 (Favipiravir) and Ribavirin on Influenza Virus Replication and Viral RNA Synthesis (2016) (71)
- Inferring Heterogeneous Evolutionary Processes Through Time: from Sequence Substitution to Phylogeography (2013) (71)
- Measles virus and rinderpest virus divergence dated to the sixth century BCE (2020) (70)
- Yellow Fever Virus Maintenance in Trinidad and Its Dispersal throughout the Americas (2010) (69)
- Evolutionary trajectory of the VP1 gene of human enterovirus 71 genogroup B and C viruses. (2010) (67)
- Reconstructing the History of Maize Streak Virus Strain A Dispersal To Reveal Diversification Hot Spots and Its Origin in Southern Africa (2011) (65)
- The emergence of SARS-CoV-2 in Europe and the US (2020) (65)
- Analysis of the Serotype and Genotype Correlation of VP1 and the 5′ Noncoding Region in an Epidemiological Survey of the Human Enterovirus B Species (2004) (65)
- Mannan-binding lectin (MBL) gene polymorphisms in ulcerative colitis and Crohn’s disease (2001) (64)
- Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable (2020) (63)
- Genomic characterization of novel dolphin papillomaviruses provides indications for recombination within the Papillomaviridae. (2008) (63)
- Geographical and Historical Patterns in the Emergences of Novel Highly Pathogenic Avian Influenza (HPAI) H5 and H7 Viruses in Poultry (2018) (62)
- Phylogeographical footprint of colonial history in the global dispersal of human immunodeficiency virus type 2 group A. (2012) (62)
- Genetic Diversity of Highly Pathogenic Avian Influenza A(H5N8/H5N5) Viruses in Italy, 2016–17 (2017) (60)
- Are hepatitis B virus "subgenotypes" defined accurately? (2010) (60)
- Phylodynamics of the HIV-1 CRF02_AG clade in Cameroon. (2012) (60)
- Bayesian Evaluation of Temporal Signal in Measurably Evolving Populations (2019) (59)
- Identifying recombinants in human and primate immunodeficiency virus sequence alignments using quartet scanning (2009) (58)
- Reconstructing the initial global spread of a human influenza pandemic (2009) (58)
- Correction: Geographic and Temporal Trends in the Molecular Epidemiology and Genetic Mechanisms of Transmitted HIV-1 Drug Resistance: An Individual-Patient- and Sequence-Level Meta-Analysis (2015) (57)
- Revealing the Micro-scale Signature of Endemic Zoonotic Disease Transmission in an African Urban Setting (2016) (57)
- Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak (2017) (56)
- Resurgence of Ebola virus in 2021 in Guinea suggests a new paradigm for outbreaks (2021) (56)
- Understanding Past Population Dynamics: Bayesian Coalescent-Based Modeling with Covariates. (2016) (56)
- Genomic Epidemiology, Evolution, and Transmission Dynamics of Porcine Deltacoronavirus (2020) (55)
- Complete genome sequence, taxonomic assignment, and comparative analysis of the untranslated regions of the Modoc virus, a flavivirus with no known vector. (2002) (55)
- Novel hepatitis B virus subgenotype A6 in African-Belgian patients. (2010) (53)
- Genomic Analysis of Hepatitis B Virus Reveals Antigen State and Genotype as Sources of Evolutionary Rate Variation (2011) (53)
- The global distribution of Banana bunchy top virus reveals little evidence for frequent recent, human-mediated long distance dispersal events (2015) (52)
- Virome characterization of game animals in China reveals a spectrum of emerging pathogens (2022) (52)
- Host ecology determines the dispersal patterns of a plant virus (2015) (51)
- Impact of CCR5delta32 host genetic background and disease progression on HIV-1 intrahost evolutionary processes: efficient hypothesis testing through hierarchical phylogenetic models. (2011) (50)
- Isolation and cloning of the raccoon (Procyon lotor) papillomavirus type 1 by using degenerate papillomavirus-specific primers. (2005) (49)
- Disentangling the role of Africa in the global spread of H5 highly pathogenic avian influenza (2019) (48)
- Using Viral Gene Sequences to Compare and Explain the Heterogeneous Spatial Dynamics of Virus Epidemics (2017) (48)
- Bayesian Inference Reveals Host-Specific Contributions to the Epidemic Expansion of Influenza A H5N1. (2015) (48)
- A genotypic resistance assay for the detection of drug resistance in the human immunodeficiency virus type 1 envelope gene. (2005) (47)
- Complete genome sequence of Montana Myotis leukoencephalitis virus, phylogenetic analysis and comparative study of the 3' untranslated region of flaviviruses with no known vector. (2002) (46)
- Limitations to contact tracing and phylogenetic analysis in establishing HIV type 1 transmission networks in Cuba. (2007) (45)
- A novel hepatitis B virus species discovered in capuchin monkeys sheds new light on the evolution of primate hepadnaviruses. (2018) (44)
- Estimation of an in vivo fitness landscape experienced by HIV-1 under drug selective pressure useful for prediction of drug resistance evolution during treatment (2008) (43)
- Molecular testing of multiple HIV-1 transmissions in a criminal case (2005) (43)
- ASSESSING PHENOTYPIC CORRELATION THROUGH THE MULTIVARIATE PHYLOGENETIC LATENT LIABILITY MODEL. (2014) (42)
- Phylogeography of Lassa Virus in Nigeria (2019) (42)
- The spread of type 2 Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) in North America: a phylogeographic approach. (2013) (41)
- Characterization of a Putative Ancestor of Coxsackievirus B5 (2010) (41)
- Phylogenetic analysis of hepatitis B virus full-length genomes reveals evidence for a large nosocomial outbreak in Belgium. (2009) (41)
- A large Finnish echovirus 30 outbreak was preceded by silent circulation of the same genotype (2011) (41)
- Phylodynamics of H5N1 avian influenza virus in Indonesia (2012) (39)
- Circulation of HRSV in Belgium: From Multiple Genotype Circulation to Prolonged Circulation of Predominant Genotypes (2013) (39)
- A Bayesian statistical analysis of human T-cell lymphotropic virus evolutionary rates. (2005) (39)
- HIV‐1 compartmentalization in diverse leukocyte populations during antiretroviral therapy (2004) (39)
- On the biogeography of Centipeda: a species-tree diffusion approach. (2014) (38)
- Molecular evolutionary analysis and mutational pattern of full‐length genomes of hepatitis B virus isolated from Belgian patients with different clinical manifestations (2010) (38)
- Genesis of avian-origin H7N9 influenza A viruses (2013) (38)
- Landscape attributes governing local transmission of an endemic zoonosis: Rabies virus in domestic dogs (2018) (38)
- Adaptive MCMC in Bayesian phylogenetics: an application to analyzing partitioned data in BEAST (2017) (37)
- Genome-Wide Evolutionary Analyses of G1P[8] Strains Isolated Before and After Rotavirus Vaccine Introduction (2015) (36)
- Differential Infection Patterns and Recent Evolutionary Origins of Equine Hepaciviruses in Donkeys (2016) (36)
- Bayesian Inference of Evolutionary Histories under Time-Dependent Substitution Rates (2019) (36)
- Exceptional Heterogeneity in Viral Evolutionary Dynamics Characterises Chronic Hepatitis C Virus Infection (2016) (35)
- Ecuador Paraiso Escondido Virus, a New Flavivirus Isolated from New World Sand Flies in Ecuador, Is the First Representative of a Novel Clade in the Genus Flavivirus (2015) (35)
- Natural selection in the evolution of SARS-CoV-2 in bats, not humans, created a highly capable human pathogen (2020) (34)
- The Phylogeography and Spatiotemporal Spread of South-Central Skunk Rabies Virus (2013) (34)
- Recent advances in computational phylodynamics. (2018) (33)
- Selection analysis identifies unusual clustered mutational changes in Omicron lineage BA.1 that likely impact Spike function (2022) (32)
- Plasma exchange-associated immunoglobulin m-negative hantavirus disease after a camping holiday in southern france. (2004) (32)
- Emergence in Japan of an HIV-1 Variant Associated with Transmission among Men Who Have Sex with Men (MSM) in China: First Indication of the International Dissemination of the Chinese MSM Lineage (2013) (32)
- Viral Characteristics Associated with the Clinical Nonprogressor Phenotype Are Inherited by Viruses from a Cluster of HIV-1 Elite Controllers (2018) (32)
- Role of viral evolutionary rate in HIV-1 disease progression in a linked cohort (2005) (31)
- Evolutionary analysis of HBV “S” antigen genetic diversity in Iranian blood donors: A nationwide study (2014) (31)
- A uniquely prevalent nonnucleoside reverse transcriptase inhibitor resistance mutation in Russian subtype A HIV-1 viruses (2014) (30)
- Phylogenetic Reconstruction of a Known HIV-1 CRF04_cpx Transmission Network Using Maximum Likelihood and Bayesian Methods (2004) (30)
- Analysis of the evolutionary relationships of HIV-1 and SIVcpz sequences using bayesian inference: implications for the origin of HIV-1. (2003) (29)
- Whole genome analysis of local Kenyan and global sequences unravels the epidemiological and molecular evolutionary dynamics of RSV genotype ON1 strains (2018) (29)
- Distinct rates and patterns of spread of the major HIV-1 subtypes in Central and East Africa (2019) (29)
- A Relaxed Directional Random Walk Model for Phylogenetic Trait Evolution. (2016) (29)
- Estimating the Relative Contribution of dNTP Pool Imbalance and APOBEC3G/3F Editing to HIV Evolution In Vivo (2007) (29)
- The recent ancestry of Middle East respiratory syndrome coronavirus in Korea has been shaped by recombination (2016) (28)
- Using phylogeographic approaches to analyse the dispersal history, velocity and direction of viral lineages — Application to rabies virus spread in Iran (2019) (28)
- Discovery and genome characterization of three new Jeilongviruses, a lineage of paramyxoviruses characterized by their unique membrane proteins (2018) (28)
- πBUSS: a parallel BEAST/BEAGLE utility for sequence simulation under complex evolutionary scenarios (2013) (28)
- Assessing the role of live poultry trade in community-structured transmission of avian influenza in China (2020) (27)
- Molecular characterization of hepatitis B virus strains circulating in Belgian patients co‐infected with HIV and HBV: Overt and occult infection (2011) (27)
- Covering all bases in HIV research: unveiling a hidden world of viral evolution. (2010) (27)
- Evolutionary dynamics of human retroviruses investigated through full-genome scanning. (2005) (27)
- Respiratory syncytial virus prevention within reach: the vaccine and monoclonal antibody landscape. (2022) (27)
- Full-genome analysis of a highly divergent simian T-cell lymphotropic virus type 1 strain in Macaca arctoides. (2005) (26)
- Genetic analyses reveal structured HIV-1 populations in serially sampled T lymphocytes of patients receiving HAART. (2006) (26)
- SlidingBayes: exploring recombination using a sliding window approach based on Bayesian phylogenetic inference (2005) (26)
- Enzootic Transmission of Yellow Fever Virus, Venezuela (2015) (25)
- Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function (2022) (25)
- On the importance of negative controls in viral landscape phylogeography (2018) (25)
- Genetic Variability of Human Respiratory Coronavirus OC43 (2005) (25)
- Evidence for a Complex Mosaic Genome Pattern in a Full-length Hepatitis C Virus Sequence (2008) (25)
- Combining phylogeography and spatial epidemiology to uncover predictors of H5N1 influenza A virus diffusion (2014) (25)
- Deep reinforcement learning for large-scale epidemic control (2020) (25)
- Genetically Different Highly Pathogenic Avian Influenza A(H5N1) Viruses in West Africa, 2015 (2016) (24)
- Contribution of Epidemiological Predictors in Unraveling the Phylogeographic History of HIV-1 Subtype C in Brazil (2015) (24)
- HBV subgenotype misclassification expands quasi-subgenotype A3. (2011) (24)
- Transmission dynamics of re-emerging rabies in domestic dogs of rural China (2018) (24)
- Simultaneously estimating evolutionary history and repeated traits phylogenetic signal: applications to viral and host phenotypic evolution (2015) (23)
- Spatio‐temporal analysis of Nova virus, a divergent hantavirus circulating in the European mole in Belgium (2016) (23)
- Dynamic features of the selective pressure on the human immunodeficiency virus type 1 (HIV-1) gp120 CD4-binding site in a group of long term non progressor (LTNP) subjects (2009) (23)
- Phylogenetic Factor Analysis. (2017) (22)
- Graph hierarchies for phylogeography (2013) (21)
- A near full-length HIV-1 genome from 1966 recovered from formalin-fixed paraffin-embedded tissue (2020) (21)
- The epidemic history of hepatitis C among injecting drug users in Flanders, Belgium (2008) (21)
- High intrapatient HIV-1 evolutionary rate is associated with CCR5-to-CXCR4 coreceptor switch. (2013) (21)
- The epidemic dynamics of hepatitis C virus subtypes 4a and 4d in Saudi Arabia (2017) (21)
- Large-scale inference of correlation among mixed-type biological traits with phylogenetic multivariate probit models (2019) (21)
- Mass migration to Europe: an opportunity for elimination of hepatitis B virus? (2019) (20)
- Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework (2020) (19)
- Proposal for a new subtype of the zoonotic genotype 3 Hepatitis E virus: HEV-3l. (2018) (19)
- Genomic Epidemiology of 2015–2016 Zika Virus Outbreak in Cape Verde (2020) (19)
- Online Bayesian Phylodynamic Inference in BEAST with Application to Epidemic Reconstruction (2020) (19)
- Phylogeography Reveals Association between Swine Trade and the Spread of Porcine Epidemic Diarrhea Virus in China and across the World (2021) (18)
- Disentangling the impact of within-host evolution and transmission dynamics on the tempo of HIV-1 evolution (2015) (18)
- Phylogenetic classification of TT virus groups based on the N22 region is unreliable. (2002) (18)
- The Phylogenetic Handbook: Introduction to recombination detection (2009) (18)
- Massive Parallelization Boosts Big Bayesian Multidimensional Scaling (2019) (18)
- Natural selection and adaptation of molecular sequences (2009) (17)
- Gradients do grow on trees: a linear-time 𝒪 (N)-dimensional gradient for statistical phylogenetics. (2020) (17)
- Tracing the Impact of Public Health Interventions on HIV-1 Transmission in Portugal Using Molecular Epidemiology (2019) (17)
- The introduction of fox rabies into Italy (2008-2011) was due to two viral genetic groups with distinct phylogeographic patterns. (2013) (17)
- Host Genetic Variation Does Not Determine Spatio-Temporal Patterns of European Bat 1 Lyssavirus (2017) (17)
- Comparing patterns and scales of plant virus phylogeography: Rice yellow mottle virus in Madagascar and in continental Africa (2019) (17)
- Genetic variation in mother–child acute seroconverter pairs from Zambia (2008) (17)
- Bayesian Best-Arm Identification for Selecting Influenza Mitigation Strategies (2017) (17)
- Time-measured phylogenies of gag, pol and env sequence data reveal the direction and time interval of HIV-1 transmission (2011) (17)
- Limited evolution of the yellow fever virus 17d in a mouse infection model (2019) (16)
- nosoi: A stochastic agent‐based transmission chain simulation framework in r (2020) (16)
- The Phylogenetic Handbook: List of contributors (2009) (16)
- Identifying the patterns and drivers of Puumala hantavirus enzootic dynamics using reservoir sampling (2019) (16)
- Quantifying Next Generation Sequencing Sample Pre-Processing Bias in HIV-1 Complete Genome Sequencing (2016) (16)
- Accurate quantification of within- and between-host HBV evolutionary rates requires explicit transmission chain modelling (2017) (16)
- Exploring full-genome sequences for phylogenetic support of HIV-1 transmission events. (2005) (16)
- Towards a unified classification for human respiratory syncytial virus genotypes (2020) (16)
- Iran's hepatitis elimination programme is under threat (2018) (16)
- Unlocking capacities of genomics for the COVID-19 response and future pandemics (2022) (16)
- Divergence dating using mixed effects clock modelling: An application to HIV-1 (2019) (16)
- Detection of Marburg Virus Disease in Guinea (2022) (15)
- Increasing importance of European lineages in seeding the hepatitis C virus subtype 1a epidemic in Spain (2019) (15)
- The Phylogenetic Handbook: Phylogenetic analysis using protein sequences (2009) (15)
- Relax, Keep Walking — A Practical Guide to Continuous Phylogeographic Inference with BEAST (2021) (14)
- Estimating the individualized HIV-1 genetic barrier to resistance using a nelfinavir fitness landscape (2010) (14)
- The multi-faceted dynamics of HIV-1 transmission in Northern Alberta: A combined analysis of virus genetic and public health data. (2017) (14)
- Earlier Initiation of Antiretroviral Treatment Coincides With an Initial Control of the HIV-1 Sub-Subtype F1 Outbreak Among Men-Having-Sex-With-Men in Flanders, Belgium (2019) (14)
- Cyclorraphan yolk proteins and lepidopteran minor yolk proteins originate from two unrelated lipase families (2004) (14)
- Molecular characterization of hepatitis B virus (HBV) strains circulating in the northern coast of the Persian Gulf and its comparison with worldwide distribution of HBV subgenotype D1 (2014) (14)
- SARS-CoV-2 European resurgence foretold: interplay of introductions and persistence by leveraging genomic and mobility data (2021) (13)
- Emergence of an early SARS-CoV-2 epidemic in the United States (2021) (13)
- Complete nucleotide sequence and evolutionary analysis of a gorilla foamy virus. (2011) (13)
- The evolution of human immunodeficiency virus type-1 (HIV-1) envelope molecular properties and coreceptor use at all stages of infection in an HIV-1 donor-recipient pair. (2012) (13)
- Identifying predictors of time-inhomogeneous viral evolutionary processes (2016) (13)
- The Phylogenetic Handbook: Molecular clock analysis (2009) (13)
- Relaxed Random Walks at Scale. (2019) (13)
- On Hepatitis C Virus Evolution: The Interaction between Virus and Host towards Treatment Outcome (2013) (13)
- Advances in Visualization Tools for Phylogenomic and Phylodynamic Studies of Viral Diseases (2019) (13)
- Accommodating individual travel history, global mobility, and unsampled diversity in phylogeography: a SARS-CoV-2 case study. (2020) (12)
- Spatial and temporal fluctuations in COVID-19 fatality rates in Brazilian hospitals (2022) (12)
- Site stripping based on likelihood ratio reduction is a useful tool to evaluate the impact of non-clock-like behavior on viral phylogenetic reconstructions. (2003) (11)
- A Comprehensive Molecular Epidemiological Analysis of SARS-CoV-2 Infection in Cyprus from April 2020 to January 2021: Evidence of a Highly Polyphyletic and Evolving Epidemic (2021) (11)
- In Search of Covariates of HIV-1 Subtype B Spread in the United States—A Cautionary Tale of Large-Scale Bayesian Phylogeography (2020) (11)
- The seasonal flight of influenza: a unified framework for spatiotemporal hypothesis testing (2012) (11)
- Bayesian Phylogeographic Analysis Incorporating Predictors and Individual Travel Histories in BEAST (2021) (11)
- Full-length HIV type 1 genome analysis showing evidence for HIV type 1 transmission from a nonprogressor to two recipients who progressed to AIDS. (2005) (11)
- Inferring Phenotypic Trait Evolution on Large Trees With Many Incomplete Measurements (2019) (10)
- Incorporating heterogeneous sampling probabilities in continuous phylogeographic inference - Application to H5N1 spread in the Mekong region (2019) (10)
- Efficient Bayesian inference of general Gaussian models on large phylogenetic trees (2020) (10)
- Hamiltonian Monte Carlo sampling to estimate past population dynamics using the skygrid coalescent model in a Bayesian phylogenetics framework (2020) (10)
- Phylogenetic analysis of two genotype 3 Hepatitis E viruses from wild boar, Italy (2018) (10)
- Emergency of Primary NNRTI Resistance Mutations without Antiretroviral Selective Pressure in a HAART-Treated Child (2009) (9)
- Virus genomes reveal the factors that spread and sustained the West African Ebola epidemic (2016) (9)
- Reassortment compatibility between PB1, PB2, and HA genes of the two influenza B virus lineages in mammalian cells (2016) (9)
- A comparative study of HIV-1 clade C env evolution in a Zambian infant with an infected rhesus macaque during disease progression (2009) (9)
- The Phylogenetic Handbook: Molecular adaptation (2009) (8)
- A Novel Series of Indole Alkaloid Derivatives Inhibit Dengue and Zika Virus Infection by Interference with the Viral Replication Complex (2021) (8)
- Phylogenetic relationships of the HA and NA genes between vaccine and seasonal influenza A(H3N2) strains in Korea (2017) (8)
- A systematic review on global RSV genetic data: Identification of knowledge gaps (2021) (8)
- Symptom evolution following the emergence of maize streak virus (2019) (8)
- Bayesian model selection in phylogenetics and genealogy-based population genetics (2014) (8)
- Predicting the evolution of the Lassa virus endemic area and population at risk over the next decades (2021) (8)
- Evaluating predictive markers for viral rebound and safety assessment in blood and lumbar fluid during HIV-1 treatment interruption. (2020) (8)
- Molecular detection and genomic characterization of diverse hepaciviruses in African rodents (2021) (7)
- HIV-1 evolution in patients undergoing immunotherapy with Tat, Rev, and Nef expressing dendritic cells followed by treatment interruption (2013) (7)
- Markov-Modulated Continuous-Time Markov Chains to Identify Site- and Branch-Specific Evolutionary Variation in BEAST (2019) (7)
- A near-full-length HIV-1 genome from 1966 recovered from formalin-fixed paraffin-embedded tissue (2019) (7)
- Updated vaccine protects from infection with SARS-CoV-2 variants, prevents transmission and is immunogenic against Omicron in hamsters (2022) (7)
- Bioinformatics Meets Virology: The European Virus Bioinformatics Center’s Second Annual Meeting (2018) (7)
- Evolutionary trajectory of the VP 1 gene of human enterovirus 71 genogroup B and C viruses (2010) (7)
- Low Postseroconversion CD4+ T-cell Level Is Associated with Faster Disease Progression and Higher Viral Evolutionary Rate in HIV-2 Infection (2019) (6)
- Global spatial dynamics and vaccine-induced fitness changes of Bordetella pertussis (2022) (6)
- Archival influenza virus genomes from Europe reveal genomic variability during the 1918 pandemic (2022) (6)
- Principled, practical, flexible, fast: A new approach to phylogenetic factor analysis (2021) (6)
- Epidemiological history and genomic characterization of non-D1 HBV strains identified in Iran. (2015) (6)
- HCV genotype distribution in Flanders and Brussels (Belgium): unravelling the spread of an uncommon HCV genotype 5a cluster (2010) (6)
- Scalable Bayesian divergence time estimation with ratio transformations (2021) (5)
- The history of measles: from a 1912 genome to an antique origin (2019) (5)
- High frequency of HIV-1 dual infections in Cameroon, West Central Africa. (2011) (5)
- The coalescent: population genetic inference using genealogies (2009) (5)
- Shrinkage-based random local clocks with scalable inference (2021) (5)
- Genome Sequence of Ruloma Virus, a Novel Paramyxovirus Clustering Basally to Members of the Genus Jeilongvirus (2021) (5)
- Bayesian nonparametric clustering in phylogenetics: modeling antigenic evolution in influenza (2017) (5)
- Phylogenetic analysis using protein sequences. Practice (2009) (5)
- Spatio-temporal Dynamics of Foot-and-Mouth Disease Virus in South America (2015) (5)
- High-Performance Computing in Bayesian Phylogenetics and Phylodynamics Using BEAGLE. (2019) (5)
- The Phylogenetic Handbook: References (2009) (5)
- Determinants of dengue virus dispersal in the Americas (2020) (5)
- Putative APOBEC3 deaminase editing in MPXV as evidence for sustained human transmission since at least 2016 (2023) (4)
- Genomic population structure associated with repeated escape of Salmonella enterica ATCC14028s from the laboratory into nature (2021) (4)
- Explorer Unifying Viral Genetics and Human Transportation Data to Predict the Global Transmission Dynamics of Human Influenza H 3 N 2 (2017) (4)
- Synonymous and nonsynonymous distances help untangle convergent evolution and recombination (2014) (4)
- Bayesian codon substitution modelling to identify sources of pathogen evolutionary rate variation (2016) (4)
- Archival influenza virus genomes from Europe reveal genomic and phenotypic variability during the 1918 pandemic (2021) (4)
- Rivers and landscape ecology of a plant virus, Rice yellow mottle virus along the Niger Valley (2021) (4)
- Generalized Linear Models for Identifying Predictors of the Evolutionary Diffusion of Viruses (2014) (4)
- Quantifying rates of HIV-1 flow between risk groups and geographic locations in Kenya: A country-wide phylogenetic study (2022) (3)
- Efficiently Analysing Large Viral Data Sets in Computational Phylogenomics (2020) (3)
- Sequence databases and database searching (2009) (3)
- Correction: Phylodynamics and Human-Mediated Dispersal of a Zoonotic Virus (2011) (3)
- A21 HIV-1 sub-subtype F1 outbreak among MSM in Belgium (2017) (3)
- Report 46: Factors driving extensive spatial and temporal fluctuations in COVID-19 fatality rates in Brazilian hospitals (2021) (3)
- The phylodynamics of SARS-CoV-2 during 2020 in Finland (2021) (3)
- Reconstruction of the origin and dispersal of the worldwide dominant Hepatitis B Virus subgenotype D1 (2022) (3)
- Molecular and genomic investigation of an urban outbreak of dengue virus serotype 2 in Angola, 2017–2019 (2022) (3)
- HIV-1 p24Gag adaptation to modern and archaic HLA-allele frequency differences in ethnic groups contributes to viral subtype diversification (2020) (3)
- Characterization of persistent HIV-1 in a broad spectrum of CD4+T cells isolated from peripheral blood and gut associated lymphoid tissue from patients on long-term suppressive therapy (2012) (3)
- Phylogeographic and phylodynamic approaches to epidemiological hypothesis testing (2020) (3)
- The Phylogenetic Handbook: Multiple sequence alignment (2009) (3)
- Scalable Bayesian phylogenetics (2022) (3)
- Explorer SPREAD : spatial phylogenetic reconstruction of evolutionary dynamics (2011) (3)
- Data from: Integrating influenza antigenic dynamics with molecular evolution (2014) (3)
- Accommodating sampling location uncertainty in continuous phylogeography (2022) (3)
- Spatial dynamics and vaccine-induced fitness changes of Bordetella pertussis (2021) (2)
- Global origins of African highly pathogenic avian influenza H5Nx viruses and intracontinental spread (2019) (2)
- Phylogenomic Characterization of Lopma Virus and Praja Virus, Two Novel Rodent-Borne Arteriviruses (2021) (2)
- In Vivo Therapy with M2e-Specific IgG Selects for an Influenza A Virus Mutant with Delayed Matrix Protein 2 Expression (2021) (2)
- Endogenous Viral Elements in Shrew Genomes Provide Insights into Pestivirus Ancient History (2022) (2)
- Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1 (2023) (2)
- High-quality RNA purification with on-column DNase treatment from tissue specimens v1 (2020) (2)
- Mannan-binding lectin gene polymorphisms in ulcerative colitis and Crohn's disease (2001) (2)
- Phycova — a tool for exploring covariates of pathogen spread (2022) (2)
- Air conditioning system usage and SARS-CoV-2 transmission dynamics in Iran (2020) (2)
- Gradients do grow on trees: a linear-time ${\cal O}\hspace{-0.2em}\left( N \right)$-dimensional gradient for statistical phylogenetics (2019) (2)
- Many-core algorithms for high-dimensional gradients on phylogenetic trees. (2023) (1)
- High-throughput HIV sequencing: evolution in 2D (2011) (1)
- Tracking virus outbreaks in the 21st century 1 (2018) (1)
- BEAGLE 3 High-performance Computational Library for Phylogenetic Inference (2020) (1)
- Hamiltonian zigzag speeds up large-scale learning of direct effects among mixed-type biological traits (2022) (1)
- Unravelling the evolutionary relationships of hepaciviruses within and across rodent hosts (2020) (1)
- Transmission cluster of dual-class resistant HIV-1 in untreated patients (2007) (1)
- Make the most of your samples: Bayes factor estimators for high-dimensional models of sequence evolution (2013) (1)
- Total virome characterizations of game animals in China reveals a spectrum of emerging viral pathogens (2021) (1)
- Establishment and early spread of the AIDS pandemic (2014) (1)
- Accelerated evolution of SARS-CoV-2 in free-ranging white-tailed deer (2023) (1)
- Updated vaccine protects against SARS-CoV-2 variants including Omicron (B.1.1.529) and prevents transmission in hamsters (2022) (1)
- Discovery of Flaviviridae-derived endogenous viral elements in shrew genomes provide novel insights into Pestivirus ancient history (2022) (1)
- Genomic Epidemiology of the SARS-CoV-2 Epidemic in Cyprus from November 2020 to October 2021: The Passage of Waves of Alpha and Delta Variants of Concern (2022) (1)
- Estimating an In Vivo Fitness Landscape During Protease and Reverse Transcriptase Treatment from Observed Genetic Evolution to Predict Accumulation of Mutations under Selective Pressure (2007) (1)
- Accelerating Bayesian inference of dependency between complex biological traits (2022) (1)
- The role of high-risk geographies in the perpetuation of the HIV epidemic in rural South Africa: A spatial molecular epidemiology study (2022) (1)
- Data Integration in Bayesian Phylogenetics (2022) (1)
- Viral Genome Dynamics During Antiviral Resistance Selection: A First Glimpse into Viral Evolution (2011) (1)
- Phylogenetic analysis of two genotype 3 Hepatitis E viruses from wild boar, Italy (2018) (1)
- Predicting ordered accumulation of mutations of HIV under treatment using an estimate of the HIV in vivo fitness function during treatment (2006) (1)
- Evolution of influenza A virus hemagglutinin H1 and H3 across host species (2022) (1)
- Combined Phylogeographic Analyses and Epidemiologic Contact Tracing to Characterize Atypically Pathogenic Avian Influenza (H3N1) Epidemic, Belgium, 2019 (2023) (1)
- Consecutive Transmission of Dual-Class Resistant HIV-1 in Untreated Patients (2006) (1)
- The International Virus Bioinformatics Meeting 2022 (2022) (1)
- Adaptive MCMC for multi-partite data in Bayesian Phylogenetics (2018) (1)
- and after rotavirus vaccine introduction (2015) (1)
- Track A Basic Science (2012) (1)
- Faria populations The early spread and epidemic ignition of HIV-1 in human (2014) (1)
- T-705 and ribavirin induce lethal mutagenesis of influenza virus (2015) (1)
- SPREAD 4: online visualisation of pathogen phylogeographic reconstructions (2022) (1)
- πBUSS: a parallel BEAST/BEAGLE utility for sequence simulation under complex evolutionary scenarios (2014) (1)
- Author Correction: Spatial and temporal fluctuations in COVID-19 fatality rates in Brazilian hospitals (2022) (1)
- The Phylogenetic Handbook: Preface (2009) (1)
- Geographic and temporal trends in the molecular epidemiology and genetic mechanisms of transmitted HIV-1 drug resistance (2015) (0)
- A4 An amplicon-based approach for universal amplification, sequencing, and assembly of full-length HIV-1 samples from the DRC (2019) (0)
- Phylodynamics of the CRF02_AG clade in Cameroon (2011) (0)
- phylogeography/SARS-CoV-2_EUR_PHYLOGEOGRAPHY: First release (2021) (0)
- Edinburgh Explorer Inferring heterogeneous evolutionary processes through time (2014) (0)
- Toward a quantitative understan ding of viral phylogeography (2011) (0)
- Edinburgh Research Explorer Phylogenetic surveillance of viral genetic diversity and the evolving molecular epidemiology of human immunodeficiency virus type 1 (2018) (0)
- Reconstruction of an HIV Transmission History in a Bayesian Coalescent Framework (2013) (0)
- International BioInformatics Workshop on Virus Evolution and Molecular Epidemiology. (2013) (0)
- Title Spatial Dynamics of Human-Origin H 1 Influenza A Virus in NorthAmerican Swine (2011) (0)
- Scanning the PTLV genome for a molecular clock, evolutionary rates and selective pressures (2003) (0)
- HIV-2 diffusion patterns using Bayesian phylogeography (2009) (0)
- Enzootic Transmission of Yellow Fever Virus , Venezuela Technical Appendix (2014) (0)
- A Forward Agent-Based Transmission Chain Simulator [R package nosoi version 1.0.3] (2020) (0)
- Explorer Toward a quantitative understanding of viral phylogeography (2017) (0)
- Consecutive Transmission of Dual-Class Resistant HIV-1 With the Development of a Secondary Protease Mutation in Untreated Patients (2006) (0)
- Sequence databases and database searching: Practice (2009) (0)
- Reconstruction of SARS-CoV-2 outbreaks in a primary school using epidemiological and genomic data (2022) (0)
- Accurate model selection while accommodating phylogenetic uncertainty in Bayesian phylogenetics (2012) (0)
- HIV genome-wide diversity in large-scale patient populations (2013) (0)
- An integrated map of HIV genome-wide variation from a population perspective (2015) (0)
- Vandamme in the Attachment G Glycoprotein Virus Subgroup A : Positively Selected Sites Patterns of Human Respiratory Syncytial Molecular Evolution and Circulation (2004) (0)
- Simulating the origin of HIV-1 group M in Kinshasa: why did the epidemic emerge when it did? (2009) (0)
- Evaluating recombination patterns in human and primate immunodeficiency viruses evolution using a statistical quartet scanning approach (2007) (0)
- Population genomic analysis of within-host HIV diversity (2007) (0)
- Phylogenetic analysis and molecular characterization of strains circulating in HIV/HBV co infected patients with occult and overt infections in Belgium (2010) (0)
- Comparative genomics in AIDS research (2008) (0)
- Whole genome analysis of local Kenyan and global sequences unravels the epidemiological and molecular evolutionary dynamics of RSV genotype ON1 strains (2018) (0)
- Full protection against all four SARS-CoV-2 variants of concern (VOC) in hamsters requires revision of spike antigen used for vaccination (2021) (0)
- Efficient phylogeographic hypothesis testing in viral epidemic histories (2010) (0)
- Promiscuous Sex and Genital Ulcer Diseases Explain the Pandemic Emergence of HIV Pandemic Emergence of HIV (2007) (0)
- Hamiltonian zigzag accelerates large-scale inference for conditional dependencies between complex biological traits (2022) (0)
- Population dynamics of subsequent epidemic norovirus lineages; the GII.4 strains further explored (2008) (0)
- Unifying RSV Evolutionary Dynamics and Epidemiology Through Phylodynamic Analyses (2015) (0)
- The origin of epidemic HIVs by GUD-facilitated heterosexual transmission (2009) (0)
- Evolution under drug selective pressure can disturb phylogenetic inferences for HIV transmission chains (2004) (0)
- PLOS Pathogens 2017 Reviewer and Editorial Board Thank You (2018) (0)
- Explorer Bayesian Phylogeography Finds Its Roots (2017) (0)
- The VP7 gene segments of different rotavirus genotypes are evolving at the same rate (2006) (0)
- Parasite hybridization promotes spreading of endosymbiotic viruses (2023) (0)
- A genome-wide analysis reveals complex patterns of directional selection in SIVcpz/HIV-1 with few instances of human-host adaptation (2009) (0)
- A Flexible Bayesian Framework to Study Viral Trait Evolution (2019) (0)
- A comparative analysis of the HCV genotype 5a molecular epidemiology in Belgium and South Africa (2006) (0)
- Towards Realtime Bayesian Inference for Pathogen Phylodynamics (2019) (0)
- Understanding the adenine richness of the HIV genome through the estimation of misincorporation rates in viv (2007) (0)
- The worldwide spread and evolution of HCV genotype 5a (2009) (0)
- The Origins of Epidemic HIV Date to a Unique Window of Opportunity for the Initial Spread of SIV Infections Transmitted to Human Populations (2009) (0)
- The emergence and early dissemination of pandemic Human Immunodeficiency virus type 1 (2012) (0)
- A large-scale screening for hepaciviruses in African rodents (2018) (0)
- Software for Systematics and Evolution (2016) (0)
- Molecular HIV evidence backs accused medics - Expert opinion (2006) (0)
- Phylogenetic modelling of temporal heterogeneity in the circulation of human influenza lineages (2015) (0)
- Rotavirus genotype diversity in Belgium from 1999 to 2003: molecular characterization and evolutionary rate of emerging G9 strains (2004) (0)
- Tracing virus migration using Bayesian phylogeographic inference (2007) (0)
- Bayesian phylogeographic reconstruction of HIV-1 diffusion dynamics (2009) (0)
- Summarizing introductions and persistence using Markov jumps inferred by BEAST (2021) (0)
- Transmission of subtype C HIV-1 during acute infection in mother-infant pairs in Zambia (2007) (0)
- Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak (2018) (0)
- Investigating the origin and nature of epidemics in the history of HIV-1 (2007) (0)
- Variant-specific introduction and dispersal dynamics of SARS-CoV-2 in New York City-from Alpha to Omicron. (2023) (0)
- Reconciling host and pathogen trees for a large HIV transmission chain (2013) (0)
- Random-effects substitution models for phylogenetics via scalable gradient approximations. (2023) (0)
- Bayesian framework to identify the determinants of viral cross-species transmission and host shifts (2012) (0)
- Evolutionary Dynamics of HIV-2 Infection in a Community Cohort of West Africa (2009) (0)
- Tracking virus outbreaks in the twenty-first century (2018) (0)
- Phylogenetic and statistical analysis of an unexpected HCV genotype 5a cluster in Belgium (2005) (0)
- A63 Quantifying the dynamics of evolutionary rates through time (2019) (0)
- Combining phylogeography and spatial epidemiology to uncover predictors of H5N1 influenza A virus diffusion (2014) (0)
- HIV-1 intra-host evolutionary processes: efficient hypothesis testing through (2010) (0)
- Early Genomic Surveillance and Phylogeographic Analysis of Getah Virus, a Reemerging Arbovirus, in Livestock in China (2022) (0)
- A Relaxed Drift Diffusion Model for Phylogenetic Trait Evolution (2015) (0)
- Special Issue for the Workshop on Phylogenetics for Infectious Diseases - With a focus on DNA viruse (2013) (0)
- Author response: Integrating influenza antigenic dynamics with molecular evolution (2013) (0)
- Edinburgh Research Explorer Integrating influenza antigenic dynamics with molecular evolution (2014) (0)
- Discovery and genome characterization of three new Jeilongviruses, a lineage of paramyxoviruses characterized by their unique membrane proteins (2018) (0)
- Analysis of the HCV genotype 5a molecular epidemiology in Belgium using a Bayesian approach (2005) (0)
- Reconstructing the history of Maize streak virus 1 strain-A dispersal to reveal diversification 2 hotspots and its origin in southern Africa 3 4 (2011) (0)
- A spatiotemporal reconstruction of HIV-1 CRF02_AG epidemic history in Cameroon (2010) (0)
- Bayesian spatiotemporal reconstruction of the HIV-2 epidemic history (2010) (0)
- Coalescent-Based Modeling with Covariates (2016) (0)
- Detecting second-order neighboring effects in primate ancestral sequences (2013) (0)
- Fatal brain necrosis in primary HIV-1 infection despite treatment: viral characterization (2006) (0)
- Corrigendum to “Epidemiological history and genomic characterization of non-D1 HBV strains identified in Iran”[J. Clin. Virol. 63 (2015) 38–41] (2015) (0)
- Uncovering HIV-2 diffusion patterns using Bayesian phylogeographic analyses (2009) (0)
- P1191 HETEROGENEOUS EVOLUTIONARY DYNAMICS OF CHRONIC HEPATITIS-C INFECTION PREDICT LONG-TERM PERSISTENCE OF VIRUS THROUGH TREATMENT (2014) (0)
- Estimating evolutionary rates and divergence times ... . ... and a bit of model testing (2018) (0)
- Comparison of human T-cell lymphotropic virus introductions and evolutionary rates using Bayesian methods (2005) (0)
- Quantification of the evolutionary rate in the VP7 gene segment of human G9 rotaviruses (2004) (0)
- An integrated map of HBV genome-wide variation from the world population perspective (2015) (0)
- Generalized Polya Urn Process Models for Bayesian Phylogenetic Inference (2019) (0)
- Phylodynamic reconstruction of hepatitis B virus D1, D2 and D3 strains in Iran (2015) (0)
- Inferring large-scale heterogeneous evolutionary processes through time (2013) (0)
- Nature Microbiology Review (2018) (0)
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What Schools Are Affiliated With Philippe Lemey?
Philippe Lemey is affiliated with the following schools:
