Piero Carninci

Q: What Schools Are Affiliated With Piero Carninci

Piero Carninci is affiliated with the following schools: University of Bologna, University of Cambridge, University of Trieste, University of Tokyo, Riken

Piero Carninci's AcademicInfluence.com Rankings

Piero Carninci

Biology

#8752

World Rank

#11880

Historical Rank

Computational Biology

#167

World Rank

#168

Historical Rank

Genetics

#883

World Rank

#979

Historical Rank

Molecular Biology

#1136

World Rank

#1162

Historical Rank

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Biology

Piero Carninci's Degrees

PhD Molecular Biology University of Bologna

Why Is Piero Carninci Influential?

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According to Wikipedia, Piero Carninci is an Italian geneticist who graduated from the University of Trieste in 1989 and from 1990 to 1995 was an inventor of various DNA sequences and extractions. Later on he moved to Japan where he worked in RIKEN. He became Omics Science Center director in 2008 which was RIKEN division. Currently he specializes CAGE, leads the FANTOM project, and is also a writer of over 200 scientific papers. In 2014, he won the Chen Award of Excellence. In 2016, he became a recipient of the Shimadzu Prize. From 2020 is Head of the Genomics Research Centre, Functional Genomics Programme, of Human Technopole.

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Piero Carninci's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project (2007) (5196)
Initial sequencing and comparative analysis of the mouse genome. (2002) (4609)
Landscape of transcription in human cells (2012) (4392)
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression (2012) (4237)
The Transcriptional Landscape of the Mammalian Genome (2005) (3394)
An atlas of active enhancers across human cell types and tissues (2014) (2106)
An integrated encyclopedia of DNA elements in the human genome (2012) (2080)
Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray. (2002) (1985)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences (2002) (1846)
A promoter-level mammalian expression atlas (2014) (1664)
Antisense Transcription in the Mammalian Transcriptome (2005) (1642)
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs (2002) (1543)
A User's Guide to the Encyclopedia of DNA Elements (ENCODE) (2011) (1467)
Insights into social insects from the genome of the honeybee Apis mellifera (2006) (1356)
Genome-wide analysis of mammalian promoter architecture and evolution (2006) (1317)
The Human Cell Atlas (2017) (1285)
Monitoring the Expression Pattern of 1300 Arabidopsis Genes under Drought and Cold Stresses by Using a Full-Length cDNA Microarray (2001) (1169)
Direct generation of functional dopaminergic neurons from mouse and human fibroblasts (2011) (966)
Empirical Analysis of Transcriptional Activity in the Arabidopsis Genome (2003) (951)
Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice (2003) (882)
Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana. (2003) (880)
Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat (2012) (827)
An atlas of human long non-coding RNAs with accurate 5′ ends (2017) (783)
Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage (2003) (757)
The regulated retrotransposon transcriptome of mammalian cells (2009) (735)
Functional annotation of a full-length mouse cDNA collection (2001) (682)
Functional Annotation of a Full-Length Arabidopsis cDNA Collection (2002) (681)
Somatic retrotransposition alters the genetic landscape of the human brain (2011) (647)
A fast method for high-quality genomic DNA extraction from whole human blood. (1991) (620)
Gateways to the FANTOM5 promoter level mammalian expression atlas (2015) (611)
An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man (2010) (592)
A draft network of ligand–receptor-mediated multicellular signalling in human (2015) (580)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (2004) (565)
Diversity and dynamics of the Drosophila transcriptome (2014) (558)
Mammalian RNA polymerase II core promoters: insights from genome-wide studies (2007) (533)
Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells (2015) (502)
Metazoan promoters: emerging characteristics and insights into transcriptional regulation (2012) (473)
Site-specific DICER and DROSHA RNA products control the DNA damage response (2012) (469)
CAGE: cap analysis of gene expression (2006) (466)
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line (2009) (441)
The Reality of Pervasive Transcription (2011) (418)
Small RNAs derived from snoRNAs. (2009) (415)
Tiny RNAs associated with transcription start sites in animals (2009) (370)
Comparative genomics of Physcomitrella patens gametophytic transcriptome and Arabidopsis thaliana: Implication for land plant evolution (2003) (363)
An integrated expression atlas of miRNAs and their promoters in human and mouse (2017) (361)
Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones (2004) (346)
Endogenous Retrotransposition Activates Oncogenic Pathways in Hepatocellular Carcinoma (2013) (344)
High-efficiency full-length cDNA cloning by biotinylated CAP trapper. (1996) (319)
Genome-wide analysis of cancer/testis gene expression (2008) (315)
Complex Loci in Human and Mouse Genomes (2006) (304)
Hidden layers of human small RNAs (2008) (303)
Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. (2000) (291)
Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation (2015) (289)
Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages (2012) (278)
Monitoring the expression pattern of around 7,000 Arabidopsis genes under ABA treatments using a full-length cDNA microarray (2002) (262)
Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance (2014) (258)
A code for transcription initiation in mammalian genomes. (2007) (254)
Monitoring the expression pattern of around 7,000 Arabidopsis genes under ABA treatments using a full-length cDNA microarray (2002) (234)
Thermostabilization and thermoactivation of thermolabile enzymes by trehalose and its application for the synthesis of full length cDNA. (1998) (232)
High-efficiency cloning of Arabidopsis full-length cDNA by biotinylated CAP trapper. (1998) (229)
Genome-wide analysis of promoter architecture in Drosophila melanogaster. (2011) (228)
Delineating developmental and metabolic pathways in vivo by expression profiling using the RIKEN set of 18,816 full-length enriched mouse cDNA arrays (2001) (222)
Unexpected expression of α- and β-globin in mesencephalic dopaminergic neurons and glial cells (2009) (220)
5′ end–centered expression profiling using cap-analysis gene expression and next-generation sequencing (2012) (219)
The Abundance of Short Proteins in the Mammalian Proteome (2006) (213)
The Drosophila gene collection: identification of putative full-length cDNAs for 70% of D. melanogaster genes. (2002) (211)
Transcriptome analysis of the aphid bacteriocyte, the symbiotic host cell that harbors an endocellular mutualistic bacterium, Buchnera. (2005) (206)
Chromatin signatures and retrotransposon profiling in mouse embryos reveal regulation of LINE-1 by RNA (2013) (200)
High-efficiency full-length cDNA cloning. (1999) (195)
A molecular neuroethological approach for identifying and characterizing a cascade of behaviorally regulated genes (2006) (195)
CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analyses (2015) (191)
Tag-based approaches for transcriptome research and genome annotation (2005) (190)
Transcript Annotation in FANTOM3: Mouse Gene Catalog Based on Physical cDNAs (2006) (189)
Unamplified cap analysis of gene expression on a single-molecule sequencer. (2011) (186)
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression (2013) (178)
Targeting a complex transcriptome: the construction of the mouse full-length cDNA encyclopedia. (2003) (176)
Discovery and functional analysis of lncRNAs: Methodologies to investigate an uncharacterized transcriptome. (2016) (176)
Amphioxus functional genomics and the origins of vertebrate gene regulation (2018) (173)
Understanding transcriptional regulation by integrative analysis of transcription factor binding data (2012) (170)
Clusters of Internally Primed Transcripts Reveal Novel Long Noncoding RNAs (2006) (168)
Redefinition of the human mast cell transcriptome by deep-CAGE sequencing. (2014) (166)
An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man (2010) (165)
Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan (2010) (162)
NMDA Receptor Regulation Prevents Regression of Visual Cortical Function in the Absence of Mecp2 (2012) (162)
Two independent transcription initiation codes overlap on vertebrate core promoters (2014) (159)
FANTOM5 CAGE profiles of human and mouse samples (2017) (153)
Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data (2009) (151)
Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE. (2009) (149)
Detecting expressed genes using CAGE. (2014) (147)
Molecular mechanisms of pituitary organogenesis: In search of novel regulatory genes (2010) (143)
Single-cell transcriptomics reveals expansion of cytotoxic CD4 T cells in supercentenarians (2019) (142)
Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries. (2010) (142)
Genetic control of the innate immune response (2003) (142)
Long non-coding RNA modifies chromatin (2011) (139)
Noncoding RNA transcription beyond annotated genes. (2007) (136)
Update of the FANTOM web resource: expansion to provide additional transcriptome atlases (2018) (136)
Transcription and enhancer profiling in human monocyte subsets. (2014) (136)
Comparative validation of the D. melanogaster modENCODE transcriptome annotation (2014) (134)
Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis (2004) (132)
Chromatin-associatedRNA interference components contribute to transcriptional regulation in Drosophila (2011) (131)
Transcriptional network dynamics in macrophage activation. (2006) (128)
Antisense transcripts with rice full-length cDNAs (2003) (124)
Mice and Men: Their Promoter Properties (2006) (124)
Transcriptional and structural impact of TATA-initiation site spacing in mammalian core promoters (2006) (122)
PAPD5-mediated 3′ adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease (2014) (122)
Genome sequence and analysis of the Japanese morning glory Ipomoea nil (2016) (119)
Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis (2013) (115)
Heterotachy in Mammalian Promoter Evolution (2006) (112)
Discrimination of Non-Protein-Coding Transcripts from Protein-Coding mRNA (2006) (111)
Biased allelic expression in human primary fibroblast single cells. (2015) (110)
Expression analysis of the long non-coding RNA antisense to Uchl1 (AS Uchl1) during dopaminergic cells' differentiation in vitro and in neurochemical models of Parkinson's disease (2015) (109)
Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation (2014) (107)
The complexity of the mammalian transcriptome (2006) (106)
A novel feature of microsatellites in plants: a distribution gradient along the direction of transcription (2003) (105)
A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE. (2008) (104)
The genome sequence of the spontaneously hypertensive rat: Analysis and functional significance. (2010) (101)
Tagging mammalian transcription complexity. (2006) (101)
Chromatin-associated RNAi components contribute to transcriptional regulation in Drosophila (2011) (100)
High efficiency selection of full-length cDNA by improved biotinylated cap trapper. (1997) (98)
Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing (2014) (97)
Dynamic usage of transcription start sites within core promoters (2006) (95)
Placental expression profiling in preeclampsia: local overproduction of hemoglobin may drive pathological changes. (2008) (93)
Functional annotation of human long noncoding RNAs via molecular phenotyping (2019) (91)
Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals (2016) (91)
Complementing tissue characterization by integrating transcriptome profiling from the Human Protein Atlas and from the FANTOM5 consortium (2015) (90)
CAGE (cap analysis of gene expression): a protocol for the detection of promoter and transcriptional networks. (2012) (90)
The ORFeome Collaboration: a genome-scale human ORF-clone resource (2016) (89)
The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation (2009) (89)
Multifaceted mammalian transcriptome. (2008) (89)
Analysis of the human monocyte-derived macrophage transcriptome and response to lipopolysaccharide provides new insights into genetic aetiology of inflammatory bowel disease (2017) (88)
CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis (2005) (88)
LOCATE: a mouse protein subcellular localization database (2005) (88)
Paradigm shifts in genomics through the FANTOM projects (2015) (86)
RADICL-seq identifies general and cell type–specific principles of genome-wide RNA-chromatin interactions (2019) (85)
Transcriptional profiling of genes responsive to abscisic acid and gibberellin in rice: phenotyping and comparative analysis between rice and Arabidopsis. (2004) (84)
Evolutionary turnover of mammalian transcription start sites. (2006) (83)
Alternate transcription of the Toll-like receptor signaling cascade (2006) (82)
Transcriptional Dynamics Reveal Critical Roles for Non-coding RNAs in the Immediate-Early Response (2015) (81)
Solution Structure of the SEA Domain from the Murine Homologue of Ovarian Cancer Antigen CA125 (MUC16)* (2004) (80)
A Simple Physical Model Predicts Small Exon Length Variations (2006) (79)
Analysis of the DNA methylome and transcriptome in granulopoiesis reveals timed changes and dynamic enhancer methylation. (2014) (79)
Balanced-size and long-size cloning of full-length, cap-trapped cDNAs into vectors of the novel lambda-FLC family allows enhanced gene discovery rate and functional analysis. (2001) (79)
Antisense Transcription in the Mammalian Transcriptome RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium (2005) (79)
A damaged genome’s transcriptional landscape through multilayered expression profiling around in situ-mapped DNA double-strand breaks (2017) (78)
Gene discovery in genetically labeled single dopaminergic neurons of the retina. (2004) (77)
Comparative analysis of plant and animal calcium signal transduction element using plant full-length cDNA data. (2004) (74)
DNA damage response inhibition at dysfunctional telomeres by modulation of telomeric DNA damage response RNAs (2017) (73)
The enhancer and promoter landscape of human regulatory and conventional T-cell subpopulations. (2014) (72)
Trehalose-enhanced isolation of neuronal sub-types from adult mouse brain. (2012) (71)
Multiple tissue-specific promoters control expression of the murine tartrate-resistant acid phosphatase gene. (2003) (71)
FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions (2009) (71)
Transcriptome Analysis of Recurrently Deregulated Genes across Multiple Cancers Identifies New Pan-Cancer Biomarkers. (2016) (70)
SINEUPs are modular antisense long non-coding RNAs that increase synthesis of target proteins in cells (2015) (70)
Genomic organization of transcriptomes in mammals: Coregulation and cofunctionality. (2007) (70)
Pseudo–Messenger RNA: Phantoms of the Transcriptome (2006) (69)
Solution structure of the RWD domain of the mouse GCN2 protein (2004) (69)
RNA Dust: Where are the Genes? (2010) (69)
Transcriptional landscape of Mycobacterium tuberculosis infection in macrophages (2018) (69)
MOIRAI: a compact workflow system for CAGE analysis (2014) (67)
Prevention of hepatocellular carcinoma by targeting MYCN-positive liver cancer stem cells with acyclic retinoid (2018) (66)
SINEUPs: A new class of natural and synthetic antisense long non-coding RNAs that activate translation (2015) (66)
Discovery of transcriptional regulators and signaling pathways in the developing pituitary gland by bioinformatic and genomic approaches. (2009) (65)
Genomics approach to abscisic acid- and gibberellin-responsive genes in rice. (2003) (64)
FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki (2016) (64)
RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. (2000) (63)
NanoCAGE: a high-resolution technique to discover and interrogate cell transcriptomes. (2011) (63)
Update of the FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation (2010) (61)
Corrigendum: DNA damage response inhibition at dysfunctional telomeres by modulation of telomeric DNA damage response RNAs (2017) (61)
On biased distribution of introns in various eukaryotes. (2002) (60)
FANTOM5 CAGE profiles of human and mouse reprocessed for GRCh38 and GRCm38 genome assemblies (2017) (60)
NET-CAGE characterizes the dynamics and topology of human transcribed cis-regulatory elements (2019) (59)
Altruistic functions for selfish DNA (2009) (59)
Krimper Enforces an Antisense Bias on piRNA Pools by Binding AGO3 in the Drosophila Germline. (2015) (59)
Suppression of artifacts and barcode bias in high-throughput transcriptome analyses utilizing template switching (2012) (58)
Cytoskeletal Rearrangements in Synovial Fibroblasts as a Novel Pathophysiological Determinant of Modeled Rheumatoid Arthritis (2005) (58)
Gene Organization in Rice Revealed by Full-Length cDNA Mapping and Gene Expression Analysis through Microarray (2007) (56)
Digital expression profiling of the compartmentalized translatome of Purkinje neurons (2014) (56)
RECLU: a pipeline to discover reproducible transcriptional start sites and their alternative regulation using capped analysis of gene expression (CAGE) (2014) (55)
The Human Cell Atlas White Paper (2018) (55)
From "Cellular" RNA to "Smart" RNA: Multiple Roles of RNA in Genome Stability and Beyond. (2018) (55)
Promoter architecture of mouse olfactory receptor genes. (2012) (55)
C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution (2018) (54)
Solution structure of a BolA‐like protein from Mus musculus (2004) (54)
Whole genome transcriptome analysis (2009) (52)
Redefining the transcriptional regulatory dynamics of classically and alternatively activated macrophages by deepCAGE transcriptomics (2015) (52)
Computational promoter analysis of mouse, rat and human antimicrobial peptide-coding genes (2006) (52)
Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas (2004) (52)
Cloning full-length, cap-trapper-selected cDNAs by using the single-strand linker ligation method. (2001) (52)
Genome-wide review of transcriptional complexity in mouse protein kinases and phosphatases (2006) (51)
Identification of antisense long noncoding RNAs that function as SINEUPs in human cells (2016) (51)
Molecular biology: The long and short of RNAs (2009) (51)
Construction of a full-length cDNA library from young spikelets of hexaploid wheat and its characterization by large-scale sequencing of expressed sequence tags. (2004) (50)
Constructing the landscape of the mammalian transcriptome (2007) (50)
Characterization of gene expression in mouse blastocyst using single-pass sequencing of 3995 clones. (1998) (50)
CAGE profiling of ncRNAs in hepatocellular carcinoma reveals widespread activation of retroviral LTR promoters in virus-induced tumors (2015) (49)
Mesencephalic dopaminergic neurons express a repertoire of olfactory receptors and respond to odorant-like molecules (2014) (48)
The frequent evolutionary birth and death of functional promoters in mouse and human (2015) (48)
Temporal dynamics and transcriptional control using single-cell gene expression analysis (2013) (47)
Continued discovery of transcriptional units expressed in cells of the mouse mononuclear phagocyte lineage. (2003) (46)
The FANTOM5 collection, a data series underpinning mammalian transcriptome atlases in diverse cell types (2017) (45)
Nuclear Pore Complex Protein Mediated Nuclear Localization of Dicer Protein in Human Cells (2011) (45)
The effect of genetic variation on promoter usage and enhancer activity (2017) (43)
G alpha14 is a candidate mediator of sweet/umami signal transduction in the posterior region of the mouse tongue. (2008) (42)
Diversity and dynamics of the Drosophila (2014) (41)
Differential Expression of Genes within the Cochlea as Defined by a Custom Mouse Inner Ear Microarray (2005) (41)
The devil in the details of RNA-seq (2014) (40)
refTSS: A Reference Data Set for Human and Mouse Transcription Start Sites. (2019) (40)
A framework for integrating the songbird brain (2002) (39)
Correlation between sequence conservation of the 5' untranslated region and codon usage bias in Mus musculus genes. (2001) (38)
Genome Network and FANTOM3: Assessing the Complexity of the Transcriptome (2006) (38)
Comparative evaluation of 5'-end-sequence quality of clones in CAP trapper and other full-length-cDNA libraries. (2001) (38)
A computer-based method of selecting clones for a full-length cDNA project: simultaneous collection of negligibly redundant and variant cDNAs. (2002) (37)
Arabidopsis encyclopedia using full-length cDNAs and its application (2001) (37)
Differential Use of Signal Peptides and Membrane Domains Is a Common Occurrence in the Protein Output of Transcriptional Units (2006) (37)
The Short Non-Coding Transcriptome of the Protozoan Parasite Trypanosoma cruzi (2011) (37)
Core promoter structure and genomic context reflect histone 3 lysine 9 acetylation patterns (2010) (37)
SCPortalen: human and mouse single-cell centric database (2017) (36)
Remodeling of retrotransposon elements during epigenetic induction of adult visual cortical plasticity by HDAC inhibitors (2015) (36)
DeepCAGE Transcriptomics Reveal an Important Role of the Transcription Factor MAFB in the Lymphatic Endothelium. (2015) (35)
High-throughput verification of transcriptional starting sites by Deep-RACE. (2009) (35)
Simple and rapid preparation of plasmid template by a filtration method using microtiter filter plates. (1997) (35)
FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs (2020) (35)
DEIVA: a web application for interactive visual analysis of differential gene expression profiles (2017) (35)
Increased specificity of reverse transcription priming by trehalose and oligo-blockers allows high-efficiency window separation of mRNA display. (1999) (35)
Transcriptional, post-transcriptional and chromatin-associated regulation of pri-miRNAs, pre-miRNAs and moRNAs (2015) (35)
Non-coding RNA transcription: turning on neighbours (2008) (34)
Engineering mammalian cell factories with SINEUP noncoding RNAs to improve translation of secreted proteins. (2015) (34)
Analysis of the mouse transcriptome for genes involved in the function of the nervous system. (2003) (33)
Reduction of non-insert sequence reads by dimer eliminator LNA oligonucleotide for small RNA deep sequencing. (2010) (33)
Transcriptional sequencing: A method for DNA sequencing using RNA polymerase. (1998) (33)
Diversity of Ca2+-activated K+ channel transcripts in inner ear hair cells. (2007) (33)
Integration of genetics and miRNA–target gene network identified disease biology implicated in tissue specificity (2018) (32)
Widespread genome transcription: new possibilities for RNA therapies. (2014) (32)
The DT40 web site: sampling and connecting the genes of a B cell line (2002) (32)
Expression Specificity of Disease-Associated lncRNAs: Toward Personalized Medicine. (2016) (32)
Is sequencing enlightenment ending the dark age of the transcriptome? (2009) (32)
Automated filtration-based high-throughput plasmid preparation system. (1999) (31)
Characterization of piRNAs across postnatal development in mouse brain (2016) (31)
Promoter-level expression clustering identifies time development of transcriptional regulatory cascades initiated by ErbB receptors in breast cancer cells (2015) (31)
Regional differences in gene expression and promoter usage in aged human brains (2013) (31)
Multiplicity of 5′ Cap Structures Present on Short RNAs (2014) (30)
On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase (2016) (30)
Extra-long first-strand cDNA synthesis. (2002) (30)
Development of a DNA barcode tagging method for monitoring dynamic changes in gene expression by using an ultra high-throughput sequencer. (2008) (30)
Computer-based methods for the mouse full-length cDNA encyclopedia: real-time sequence clustering for construction of a nonredundant cDNA library. (2001) (30)
Dual-initiation promoters with intertwined canonical and TCT/TOP transcription start sites diversify transcript processing (2020) (29)
The Human Cell Atlas: Technical approaches and challenges (2017) (29)
Constructing ORFeome resources with removable termination codons. (2006) (29)
SLIC-CAGE: high-resolution transcription start site mapping using nanogram-levels of total RNA (2018) (29)
Automated Workflow for Preparation of cDNA for Cap Analysis of Gene Expression on a Single Molecule Sequencer (2012) (28)
Structural determinants of the SINE B2 element embedded in the long non-coding RNA activator of translation AS Uchl1 (2018) (28)
Functional annotation of the vlinc class of non-coding RNAs using systems biology approach (2016) (27)
SINEUP Non-coding RNA Targeting GDNF Rescues Motor Deficits and Neurodegeneration in a Mouse Model of Parkinson’s Disease (2019) (27)
Building a high-quality Human Cell Atlas (2021) (27)
Systematic analysis of transcription start sites in avian development (2017) (27)
Inferring alternative splicing patterns in mouse from a full-length cDNA library and microarray data. (2002) (26)
Computational analysis suggests that alternative first exons are involved in tissue-specific transcription in rice (Oryza sativa) (2005) (26)
Telomerase Reverse Transcriptase Regulates microRNAs (2015) (25)
Whole transcriptome analysis: what are we still missing? (2011) (25)
Transcriptional Dynamics During Human Adipogenesis and Its Link to Adipose Morphology and Distribution (2016) (25)
Comparative transcriptomics of primary cells in vertebrates (2020) (24)
Absolute expression values for mouse transcripts: re‐annotation of the READ expression database by the use of CAGE and EST sequence tags (2004) (24)
Safety and efficacy of the Russian COVID-19 vaccine: more information needed (2020) (24)
CTAB-urea method purifies RNA from melanin for cDNA microarray analysis. (2004) (24)
Subcellular Localization of Mammalian Type II Membrane Proteins (2006) (24)
SINEUP non-coding RNAs rescue defective frataxin expression and activity in a cellular model of Friedreich's Ataxia (2019) (23)
Application of Gene Expression Trajectories Initiated from ErbB Receptor Activation Highlights the Dynamics of Divergent Promoter Usage (2015) (23)
Comparison of RNA- or LNA-hybrid oligonucleotides in template-switching reactions for high-speed sequencing library preparation (2013) (23)
piRNAs Warrant Investigation in Rett Syndrome: An Omics Perspective (2012) (22)
From bench to bedside: The long journey of long non-coding RNAs (2017) (22)
Broad Heterochromatic Domains Open in Gonocyte Development Prior to De Novo DNA Methylation. (2019) (22)
Single-Nucleotide Resolution Mapping of Hepatitis B Virus Promoters in Infected Human Livers and Hepatocellular Carcinoma (2016) (21)
YY1 binding association with sex-biased transcription revealed through X-linked transcript levels and allelic binding analyses (2016) (21)
Transcriptome Analysis Uncovers a Growth-Promoting Activity of Orosomucoid-1 on Hepatocytes (2017) (21)
Population transcriptomics with single-cell resolution: A new field made possible by microfluidics: A technology for high throughput transcript counting and data-driven definition of cell types (2012) (21)
SINEUP long non-coding RNA acts via PTBP1 and HNRNPK to promote translational initiation assemblies (2019) (20)
Large-scale collection and characterization of promoters of human and mouse genes (2004) (20)
Integrative CAGE and DNA Methylation Profiling Identify Epigenetically Regulated Genes in NSCLC (2017) (19)
Identification of unique transcripts from a mouse full-length, subtracted inner ear cDNA library. (2004) (19)
Building promoter aware transcriptional regulatory networks using siRNA perturbation and deepCAGE (2010) (19)
Nuclear AGO1 Regulates Gene Expression by Affecting Chromatin Architecture in Human Cells. (2019) (19)
Dynamics of cardiomyocyte transcriptome and chromatin landscape demarcates key events of heart development (2018) (19)
Comprehensive sequence analysis of translation termination sites in various eukaryotes. (2002) (19)
Rapidly evolving human promoter regions (2008) (18)
Recounting the FANTOM CAGE-Associated Transcriptome (2019) (18)
The RNA-binding protein ILF3 binds to transposable element sequences in SINEUP lncRNAs (2019) (18)
Identification of functional features of synthetic SINEUPs, antisense lncRNAs that specifically enhance protein translation (2018) (18)
Long non-coding RNAs: definitions, functions, challenges and recommendations. (2023) (18)
Specific Mesothelial Signature Marks the Heterogeneity of Mesenchymal Stem Cells From High‐Grade Serous Ovarian Cancer (2014) (17)
Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines (2014) (17)
The FANTOM5 Computation Ecosystem: Genomic Information Hub for Promoters and Active Enhancers. (2017) (17)
Technical Advance: Transcription factor, promoter, and enhancer utilization in human myeloid cells (2015) (17)
Transcriptome analysis of periodontitis-associated fibroblasts by CAGE sequencing identified DLX5 and RUNX2 long variant as novel regulators involved in periodontitis (2016) (17)
Simplified ontologies allowing comparison of developmental mammalian gene expression (2007) (16)
Systematic assessment of long-read RNA-seq methods for transcript identification and quantification (2021) (16)
Antisense Transcription in Loci Associated to Hereditary Neurodegenerative Diseases (2019) (16)
MicroRNA-27a/b-3p and PPARG regulate SCAMP3 through a feed-forward loop during adipogenesis (2019) (16)
Protein-protein interactions of the hyperthermophilic archaeon Pyrococcus horikoshii OT3 (2005) (16)
DeepCAGE transcriptomics identify HOXD10 as a transcription factor regulating lymphatic endothelial responses to VEGF-C (2016) (15)
Removal of polyA tails from full-length cDNA libraries for high-efficiency sequencing. (2001) (15)
Cytoplasmic RNA extraction from fresh and frozen mammalian tissues. (2002) (15)
Deficiency of multidrug resistance 2 contributes to cell transformation through oxidative stress (2015) (15)
Genetics, Gene Expression and Bioinformatics of the Pituitary Gland (2009) (15)
An NMR-based approach reveals the core structure of the functional domain of SINEUP lncRNAs (2020) (14)
Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease (2018) (14)
Systemic identification of estrogen-regulated genes in breast cancer cells through cap analysis of gene expression mapping. (2014) (14)
A simple discontinuous buffer system for increased resolution and speed in gel electrophoretic analysis of DNA sequence (1990) (13)
Subtraction of cap-trapped full-length cDNA libraries to select rare transcripts. (2003) (13)
CAGE-defined promoter regions of the genes implicated in Rett Syndrome (2014) (13)
Nuclear transcriptome profiling of induced pluripotent stem cells and embryonic stem cells identify non-coding loci resistant to reprogramming (2015) (13)
A Resource for Transcriptomic Analysis in the Mouse Brain (2008) (12)
[Cap analysis gene expression: CAGE]. (2004) (12)
Linking FANTOM5 CAGE peaks to annotations with CAGEscan (2017) (12)
Multiple Zinc Finger Motifs with Comparison of Plant and Insect (2001) (12)
Genomics: Mice in the ENCODE spotlight (2014) (12)
Genome-Wide Technologies to Study RNA–Chromatin Interactions (2020) (12)
Corrigendum: A draft network of ligand-receptor-mediated multicellular signalling in human (2016) (12)
Recombination of repeat elements generates somatic complexity in human genomes (2021) (11)
FXYD6, a Na,K-ATPase Regulator, Is Expressed in Type II Taste Cells (2011) (11)
Cap Analysis of Gene Expression (CAGE): A Quantitative and Genome-Wide Assay of Transcription Start Sites. (2020) (11)
NanoCAGE analysis of the mouse olfactory epithelium identifies the expression of vomeronasal receptors and of proximal LINE elements (2013) (11)
Cap-Analysis Gene Expression (CAGE) : The Science of Decoding Genes Transcription (2009) (11)
Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements (2022) (10)
A comprehensive promoter landscape identifies a novel promoter for CD133 in restricted tissues, cancers, and stem cells (2013) (10)
Synthetic in vitro transcribed lncRNAs (SINEUPs) with chemical modifications enhance target mRNA translation (2020) (10)
Annotating non-coding transcription using functional genomics strategies. (2009) (10)
Author response: The Human Cell Atlas (2017) (10)
Isoforms of the Erythropoietin receptor in dopaminergic neurons of the Substantia Nigra (2016) (10)
STAP cells are derived from ES cells (2015) (10)
Mapping Mammalian Cell-type-specific Transcriptional Regulatory Networks Using KD-CAGE and ChIP-seq Data in the TC-YIK Cell Line (2015) (10)
Large-scale clustering of CAGE tag expression data (2007) (9)
Hunting hidden transcripts (2008) (9)
Promoter Usage and Dynamics in Vascular Smooth Muscle Cells Exposed to Fibroblast Growth Factor-2 or Interleukin-1β (2018) (9)
LETR1 is a lymphatic endothelial-specific lncRNA governing cell proliferation and migration through KLF4 and SEMA3C (2021) (9)
High Sensitivity TSS Prediction: Estimates of Locations Where TSS Cannot Occur (2010) (9)
Target-enrichment sequencing for detailed characterization of small RNAs (2018) (9)
Wavelet profiles: their application in Oryza sativa DNA sequence analysis (2002) (8)
HSA21 Single-Minded 2 (Sim2) Binding Sites Co-Localize with Super-Enhancers and Pioneer Transcription Factors in Pluripotent Mouse ES Cells (2015) (8)
Profiling transcription initiation in human aged brain using deep-CAGE (2011) (8)
George MW, Gene ER. Insights into social insects from the genome of the honeybee Apis mellifera. Nature (2006) (8)
Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network (2020) (7)
Antisense RNAs during early vertebrate development are divided in groups with distinct features (2020) (7)
A human minisatellite hosts an alternative transcription start site for NPRL3 driving its expression in a repeat number‐dependent manner (2020) (7)
The Secret Life of lncRNAs: Conserved, yet Not Conserved (2020) (7)
A discontinuous buffer system increasing resolution and reproducibility in DNA sequencing on high voltage horizontal ultrathin‐layer electrophoresis (1995) (7)
A novel control system for polymerase chain reaction using a RIKEN GS384 thermalcycler. (1997) (7)
Comprehensive Characterization of Transcriptional Activity during Influenza A Virus Infection Reveals Biases in Cap-Snatching of Host RNA Sequences (2020) (6)
Conserved temporal ordering of promoter activation implicates common mechanisms governing the immediate early response across cell types and stimuli (2018) (6)
Decoding Neuronal Diversification by Multiplexed Single-cell RNA-Seq (2021) (6)
Characterization of Novel Transcripts of Human Papillomavirus Type 16 Using Cap Analysis Gene Expression Technology (2014) (6)
Multi-year whole-blood transcriptome data for the study of onset and progression of Parkinson’s Disease (2019) (6)
Monitoring transcription initiation activities in rat and dog (2017) (6)
Correction: Transcriptional Dynamics Reveal Critical Roles for Non-coding RNAs in the Immediate-Early Response (2017) (6)
Profiling of transcribed cis-regulatory elements in single cells (2021) (6)
Cell Based Assays of SINEUP Non-coding RNAs That Can Specifically Enhance mRNA Translation. (2019) (6)
Integrated annotation and analysis of genomic features reveal new types of functional elements and large-scale epigenetic phenomena in the developing zebrafish (2021) (6)
Splicing bypasses 3' end formation signals to allow complex gene architectures. (2007) (6)
Identification of novel cerebellar developmental transcriptional regulators with motif activity analysis (2019) (6)
SINEUPs: a novel toolbox for RNA therapeutics (2021) (5)
Expanded ENCODE delivers invaluable genomic encyclopedia (2020) (5)
MIACA – Minimum Information About a Cellular Assay: Standardized description of cell-based functional assay projects (2013) (4)
Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system (2017) (4)
Corrigendum: Genome-wide analysis of mammalian promoter architecture and evolution (2007) (4)
Whole-genome sequencing of chronic lymphocytic leukemia identifies subgroups with distinct biological and clinical features (2022) (4)
Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease (2016) (4)
A Method for Similarity Search of Genomic Positional Expression Using CAGE (2006) (4)
Tunable fractionation of nucleic acids. (2009) (4)
Mapping of 19032 mouse cDNAs on mouse chromosomes (2004) (4)
Functional annotation of human long noncoding RNAs using chromatin conformation data (2021) (4)
Structure by sequencing: discovery of hidden messages in the noncoding RNA fraction. (2012) (4)
Low Quantity Single Strand CAGE (LQ-ssCAGE) Maps Regulatory Enhancers and Promoters. (2021) (3)
CAGE-TSSchip: promoter-based expression profiling using the 5'-leading label of capped transcripts (2007) (3)
Prediction of the cell-type-specific transcription of non-coding RNAs from genome sequences via machine learning. (2022) (3)
Generation of full-length cDNA libraries: focus on plants. (2009) (3)
Informatic and genomic analysis of melanocyte cDNA libraries as a resource for the study of melanocyte development and function. (2007) (3)
The piRNA pathway sustains adult neurogenesis by repressing protein synthesis (2020) (3)
Discovery of Transcription Factors Novel to Mouse Cerebellar Granule Cell Development Through Laser-Capture Microdissection (2018) (3)
Predicting cell-type-specific non-coding RNA transcription from genome sequence (2020) (3)
Human genome meeting 2016 (2016) (3)
Complexity of Mammalian Transcriptome Analyzed by RNA Deep Sequencing (2015) (3)
Analysis of splice variants of the human protein disulfide isomerase (P4HB) gene (2020) (3)
AGO1 in association with NEAT1 lncRNA contributes to nuclear and 3D chromatin architecture in human cells (2019) (3)
Inducing human retinal pigment epithelium-like cells from somatic tissue (2020) (3)
Low Quantity single strand CAGE (LQ-ssCAGE) maps regulatory enhancers and promoters (2020) (3)
TeraFly: real-time three-dimensional visualization and annotation of terabytes of multidimensional volumetric images (2017) (3)
A Transcriptional Switch Point During Hematopoietic Stem and Progenitor Cell Ontogeny. (2017) (3)
Single-cell transcriptomes of fluorescent, ubiquitination-based cell cycle indicator cells (2016) (3)
Correction: Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones (2004) (2)
Distinctive exercise-induced inflammatory response and exerkine induction in skeletal muscle of people with type 2 diabetes (2022) (2)
The Gene Regulation Knowledge Commons: The action area of GREEKC. (2021) (2)
Analysis of Enhancer-Promoter Interactions using CAGE and RADICL-Seq Technologies. (2021) (2)
MONITORING GENE EXPRESSION PATTERN UNDER DEHYDRATION AND COLD STRESS USING ARABIDOPSIS FULL-LENGTH cDNA MICROARRAY (2000) (2)
Corrigendum: Tiny RNAs associated with transcription start sites in animals (2009) (2)
Decoding neuronal diversity by single-cell Convert-seq (2019) (2)
Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network (2021) (2)
Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network (2021) (2)
Sequence-level instructions direct transcription at polyT short tandem repeats (2019) (2)
Epi-drivers and cancer-testis genes (2016) (2)
Solution structure of the SWIB domain of mouse BRG1-associated factor 60a (2004) (1)
SCAFE: a software suite for analysis of transcribed cis-regulatory elements in single cells (2022) (1)
From identification to validation to gene count (2010) (1)
LESR2 is a lymphatic endothelial-specific lncRNA that governs cell proliferation and migration through KLF4 and SEMA3C (2020) (1)
Embryonic LTR retrotransposons supply promoter modules to somatic tissues (2021) (1)
Mesencephalic dopaminergic neurons express a repertoire of olfactory receptors and respond to odorant-like molecules (2014) (1)
Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs (2022) (1)
RECLU: a pipeline to discover reproducible transcriptional start sites and their alternative regulation using capped analysis of gene expression (CAGE) (2014) (1)
Lessons from the functional characterization of lncRNAs: introduction to mammalian genome special issue (2022) (1)
Long non-coding antisense RNA to UCHL1 identifies a new class of natural and synthetic activator of translation (SINEUPs) (2012) (1)
Gene expression profiling using a mouse full-length 20 K cDNA microarray (1999) (1)
Non-allelic homologous recombination of Alu and LINE-1 elements generates somatic complexity in human genomes (2020) (1)
DEIVA: a web application for interactive visual analysis of differential gene expression profiles (2017) (1)
Systematic identification of cis-interacting lncRNAs and their targets (2022) (1)
Analysis and functional significance The genome sequence of the spontaneously hypertensive rat : Material Supplemental (2010) (1)
Towards SINEUP-based therapeutics: Design of an in vitro synthesized SINEUP RNA (2022) (1)
Comparison of RNA- or LNA-hybrid oligonucleotides in template-switching reactions for high-speed sequencing library preparation (2013) (1)
Systematic Analyses on Mouse Genome Encyclopedia (1999) (1)
Comprehensive characterisation of molecular host-pathogen interactions in influenza A virus-infected human macrophages (2019) (1)
Use of Cap Analysis Gene Expression to detect human papillomavirus promoter activity patterns at different disease stages (2020) (1)
Genome-wide analysis of mammalian promoter architecture and evolution (vol 38, pg 626, 2006) (2007) (1)
MOIRAI: a compact workflow system for CAGE analysis (2014) (1)
Author Correction: RADICL-seq identifies general and cell type–specific principles of genome-wide RNA-chromatin interactions (2020) (1)
Inducing Human Retinal Pigment Epithelium-like Cells (2020) (1)
Transcriptional landscape of Mycobacterium tuberculosis infection in macrophages (2018) (1)
Low Quantity single strand CAGE protocol v1 (2020) (1)
CAGE-defined promoter regions of the genes implicated in Rett Syndrome (2014) (1)
Evidence of transcription at polyT short tandem repeats (2019) (1)
Paradigm shifts in genomics through the FANTOM projects (2015) (1)
Correction: Cytoskeletal Rearrangements in Synovial Fibroblasts as a Novel Pathophysiological Determinant of Modeled Rheumatoid Arthritis (2005) (1)
Explorer Promoter architecture of mouse olfactory receptor genes (2017) (0)
Régulation épigénétique de la plasticité du cerveau (2008) (0)
Promoter Usage and Dynamics in Vascular Smooth Muscle Cells Exposed to Fibroblast Growth Factor-2 or Interleukin-1β (2018) (0)
Intertwined canonical and non-canonical initiation in dual promoters are pervasive and differentially regulate Polymerase II transcription (2018) (0)
The transcriptome of HBV in the human hepatocellular carcinoma (2016) (0)
Regulatory Enhancers and (2021) (0)
Japan: prize diversity, not conformity, to boost research (2021) (0)
ゲノム解析プロトコール(3)包括的完全長cDNAライブラリー作製(2) (1999) (0)
Digital expression profiling of Purkinje neurons and dendrites in subcellular resolution (2015) (0)
Epigenetic regulation of critical period plasticity in visual cortex (2007) (0)
RNA extraction from sorted neuronal subtypes (2017) (0)
ゲノム解析プロトコール(19)包括的完全長cDNAライブラリー作製(3) (2000) (0)
FANTOM4 エッジエクスプレスDB:プロモーター、遺伝子、microRNA、発現ダイナミクスおよび調節的相互作用の統合データベース (2009) (0)
Single-cell transcriptomics, scRNA-Seq and C1 CAGE discovered distinct phases of pluripotency during naïve-to-primed conversion in mice (2020) (0)
Solution structure of the DEP domain of mouse pleckstrin2 (2004) (0)
Author Correction: Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network (2022) (0)
Author Correction: RADICL-seq identifies general and cell type–specific principles of genome-wide RNA-chromatin interactions (2021) (0)
single nucleotide resolution during vertebrate embryogenesis Dynamic regulation of the transcription initiation landscape at Material Supplemental (2013) (0)
Construction of CAGE Libraries (2009) (0)
Look for methods, not conclusions (2019) (0)
Author Correction: Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system (2018) (0)
RNA Dust: Where are the Genes? (2010) (0)
Transcriptional analysis of neuronal model of ASD-associated CNV (2017) (0)
Human genome meeting 2016 (2016) (0)
A role for YY1 in sex-biased transcription revealed through X-linked promoter activity and allelic binding analyses (2016) (0)
ゲノム解析プロトコール(2)包括的完全長cDNAライブラリー作製(1) (1999) (0)
Trehalose Plays Role in cDNA Research (2010) (0)
Identification of epigenomic regulatory networks of heart development (2018) (0)
involved in tissue-specific transcription in rice (Oryza sativa) (2005) (0)
完全長cDNAライブラリ-の作製法(ヒト--cDNAからのアプロ-チ) (ゲノムサイエンス--生命の全体像の解明をめざして) -- (第1部日本におけるヒト・ゲノム研究の最前線) (1997) (0)
Multi-year whole-blood transcriptome data for the study of onset and progression of Parkinson’s Disease (2019) (0)
reveal timed changes and dynamic enhancer methylation Analysis of the DNA methylome and transcriptome in granulopoiesis (2014) (0)
genomic coordinates of the mouse CAGE peaks (2017) (0)
Genome-wide analysis of mammalian promoter architecture and evolution based upon human and mouse CAGE data, Supplementary Data (2006) (0)
Single-Cell Convert-Seq Decodes Regulatory Factors Driving Neuronal Diversity (2019) (0)
Identification of novel cerebellar developmental transcriptional regulators with motif activity analysis (2019) (0)
Amphioxus functional genomics and the origins of vertebrate gene regulation (2018) (0)
S2d2-4 New complexities of transcription start site usage in mammals(S2-d2: "Bioinformatics of Transcriptional Regulation",Symposia,Abstract,Meeting Program of EABS & BSJ 2006) (2006) (0)
Dynamics and Topology of Human Transcribed Cis-regulatory Elements (2019) (0)
Author Correction: Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network (2022) (0)
Bidirectional transcript pairs divided into five categories according to their patterns of exon-intron structure (2011) (0)
CONSTRUCTION OF A FULL-LENGTH cDNA LIBRARY OF Arabidopsis thaliana USING BIOTINYLATED CAP TRAPPER (1998) (0)
Piwil2 (Mili) sustains neurogenesis and prevents cellular senescence in the postnatal hippocampus (2022) (0)
Machine-driven parameter screen of biochemical reactions (2020) (0)
In grateful recognition of our Editorial Board (2016) (0)
Remodeling of retrotransposon elements during epigenetic induction of adult visual cortical plasticity by HDAC inhibitors (2015) (0)
Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines (2014) (0)
Studying the role of nuclear AGO1 in Chromatin Organisation (2017) (0)
Correlation between Sequence Conservation of 5' UTR and Codon Usage Bias (2000) (0)
The status of the human gene catalogue (2023) (0)
Discovery of Transcription Factors Novel to Mouse Cerebellar Granule Cell Development Through Laser-Capture Microdissection (2018) (0)
Title Genome sequence and analysis of the Japanese morning gloryIpomoea nil (2018) (0)
Microarray expression profiling of osteoclast-like cells differentiated with lipopolysaccharide. (2002) (0)
Analysis of monoallelic gene expression during conversion process from naïve-to-primed pluripotent stem cells using single cell RNA sequencing (2017) (0)
Data from: Monitoring transcription initiation activities in rat and dog (2017) (0)
Solution Structure of Mouse Hypothetical Gene (2610100B20Rik) Product Homologous to Myb DNA-binding Domain (2004) (0)
Proposal : Survey of Climate Data Mining (2001) (0)
The role of 3D localization of long non-coding RNAs in the nucleus on their function (2017) (0)
The choice of negative control antisense oligonucleotides dramatically impacts downstream analysis depending on the cellular background (2021) (0)
RT-PCR Method t o Quantify Vascula r Endothelial Growth Factor Expression (2001) (0)
Beyond the FANTOM4 (2010) (0)
ZENBU-reports: Interactive data visualization for whole genome analyses (2017) (0)
The effect of genetic variation on promoter usage and enhancer activity (2017) (0)
Abstract 2897: Recurrent transcriptome alterations across multiple cancer types (2016) (0)
Antisense oligonucleotide-mediated perturbation of long non-coding RNA reveals functional features in stem cells and across cell types (2022) (0)
CAGE-based genome-wide transcriptome analysis in FANTOM4: role of repetitive sequences in the genome for the regulation of gene expression (2010) (0)
Unrevealing biological functions of thousands of long non-coding RNAs in human (2017) (0)
Author Correction: Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system (2018) (0)
Genomics dissection of the zebrafish heart (2017) (0)
Antisense Transcription in Loci Associated to Hereditary Neurodegenerative Diseases (2019) (0)
sample information of the human samples (2017) (0)
Meeting Report: 14th International Mouse Genome Conference (2001) (0)
Author Correction: Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network (2022) (0)
Relaxation of transposon-rich chromosomal domains in germ cells (2017) (0)
NMR structure of the R3H domain from Poly(A)-specific Ribonuclease (2004) (0)
Solution structure of mouse homeodomain-only protein HOP (2004) (0)
CAGE--シークエンスベースの発現解析 (ゲノムネットワーク) -- (横断的解析方法とデータ発現プロファイル) (2004) (0)
FANTOM6: Functional annotation of long non-coding RNAs in mammals (2017) (0)
[New approach for an analysis of full-length cDNA library]. (1997) (0)
Solution structure of four helical up-and-down bundle domain of the hypothetical protein 2610208M17Rik similar to the protein FLJ12806 (2004) (0)
Bigger brains help birds in new environments (2005) (0)
Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements (2022) (0)
Noncoding RNA: The Major Output of Gene Expression (2013) (0)
Transcriptomics resources for functional genomics. (2007) (0)
Profiling gene expression patterns under drought, cold and salt stress using Arabidopsis full-length cDNA microarray (2001) (0)
Edinburgh Research Explorer Genetic control of the innate immune response (2018) (0)
Diversity and dynamics of the Drosophila transcriptome Please share how this access benefits you. Your story matters (2014) (0)
TOWARDS THE CONSTRUCTION OF ARABIDOPSIS FULL-LENGTH cDNA ENCYCLOPEDIA (2001) (0)
Retraction notice to “Discovery of transcriptional regulators and signaling pathways in the developing pituitary gland by bioinformatic and genomic approaches” [Genomics 93 (2009) 449–460] (2011) (0)
C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution (2019) (0)
Correction to: Relatively frequent switching of transcription start sites during cerebellar development (2018) (0)
Tagging Transcription Starting Sites with CAGE (2019) (0)
DeepCAGE: Genome‐Wide Mapping of Transcription Start Sites (2012) (0)
Large Scale Functional Analysis of Mammalian Long Noncoding Antisense Transcripts (2008) (0)
Analysis of splice variants of the human protein disulfide isomerase (P4HB) gene (2020) (0)
Results for 8,032 Multi-Protein TUs from the IPS Set (2006) (0)
Transcriptional landscape of Mycobacterium tuberculosis-infected macrophages (2017) (0)
3D chromosome relaxation with TE-rich heterochromatin opening during de novo DNA methylation in gonocyte (2018) (0)
SINEUP non-coding RNA activity depends on specific N6-methyladenosine nucleotides. (2023) (0)
Solution Structure of the murine ubiquitin-like 5 protein from RIKEN cDNA 0610031K06 (2003) (0)
Machine-driven parameter optimisation of biochemical reactions (2019) (0)
A new approach for screening cervical cancer by characterization of transcripts using CAGE technology. (2015) (0)
Human genome meeting 2016 (2016) (0)
CONSTRUCTION OF ARABIDOPSIS FULL-LENGTH cDNA LIBRARIES BY BIOTINYLATED CAP TRAPPER (1999) (0)
Corrigendum (2018) (0)
Human genome meeting 2016 (2016) (0)
Solution structure of a murine hypothetical protein from RIKEN cDNA 2310057J16 (2004) (0)
Solution structure of the first Murine BAG domain of Bcl2-associated athanogene 5 (2004) (0)
Complete Transcriptome Analysis by 5'-End Single-Cell RNA-Seq with Random Priming. (2022) (0)
Capture-seq protocol and TE-reX pipeline guidelines for detection of recombination of repeat elements in short- and long-DNA reads libraries (2023) (0)
FULL-LENGTH cDNA ACTIVATION SYSTEM OF PHYSCOMITRELLA PATENS TO STUDY AUXIN AND CYTOKININ FUNCTION (2001) (0)
Definition of Promotome–Transcriptome Architecture Using CAGEscan (2012) (0)
Abundant capped RNAs are derived from mRNA cleavage at 3’UTR G-Quadruplexes (2023) (0)
genomic coordinates of the human CAGE peaks (2017) (0)
Procédé d'augmentation de la réactivité enzymatique (2009) (0)
The choice of negative control antisense oligonucleotides dramatically impacts downstream analysis depending on the cellular background (2021) (0)
assay information of the mouse qualitycontrol samples for HeliScopeCAGE (2017) (0)
A new layer of complexity in the human genome: Somatic recombination of repeat elements (2023) (0)
Human genome meeting 2016 (2016) (0)
Correction to: Relatively frequent switching of transcription start sites during cerebellar development (2018) (0)
Comparison of the length distributions of bursal cDNAs and public database sequences (2011) (0)
expression table of the human CAGE peaks (2017) (0)
Temporal dynamics and transcriptional control using single-cell gene expression analysis (2013) (0)
新規塩基配列決定法 : Transcriptional Sequencing (1998) (0)
Subject Index Vol. 71, Suppl. 2, 2009 (2009) (0)
Solution structure of the SAND domain of the putative nuclear protein homolog (5830484A20Rik) (2004) (0)
RNA: Reviewers for Volume 21, 2015. (2015) (0)
Assessment of Redundancy and Full-Length Rate of Full-Length Enriched cDNA Libraries (2000) (0)
A brief introduction to proteome complexity using high-throughput transcriptome data (2012) (0)
Structural determinants of the SINE B2 element embedded in the long non-coding RNA activator of translation AS Uchl1 (2018) (0)
Chromatin associated RNAi components take part in active transcriptional regulation in Drosophila (2011) (0)
How many new genes are there (2006) (0)
From CAGE to DeepCAGE: High‐Throughput Transcription Start Site and Promoter Identification for Gene Network Analysis (2008) (0)
Development of in vitro and in vivo evaluation systems for novel non-coding RNA, SINEUP, to enhance translation level of target genes as a nucleic acid medicine (2016) (0)
Functional screening of long non-coding RNA for pluripotency regulation (2017) (0)
Gateways to the FANTOM5 promoter level mammalian expression atlas (2015) (0)
FANTOM5 web resource for the large-scale genome-wide transcription start site activity profiles of wide-range of mammalian cells (2016) (0)

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