Pierre Baldi

Q: What Schools Are Affiliated With Pierre Baldi

Pierre Baldi is affiliated with the following schools: University of California, Irvine, California Institute of Technology, National University of Rosario, University of Southern California

Pierre Baldi's AcademicInfluence.com Rankings

Pierre Baldi

Computer Science

#740

World Rank

#762

Historical Rank

#400

USA Rank

Database

#405

World Rank

#425

Historical Rank

#175

USA Rank

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Computer Science

Pierre Baldi's Degrees

PhD Computer Science University of Southern California

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Why Is Pierre Baldi Influential?

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According to Wikipedia, Pierre Baldi is a distinguished professor of computer science at University of California Irvine and the director of its Institute for Genomics and Bioinformatics. Education and early life Born in Rome , Pierre Baldi received his Bachelor of Science and Master of Science degrees at the University of Paris, in France. He then obtained his Ph.D. degree in mathematics at the California Institute of Technology in 1986 supervised by R. M. Wilson.

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Pierre Baldi's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Assessing the accuracy of prediction algorithms for classification: an overview (2000) (1938)
A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes (2001) (1750)
Bayesian surprise attracts human attention (2005) (1513)
Neural networks and principal component analysis: Learning from examples without local minima (1989) (1429)
Autoencoders, Unsupervised Learning, and Deep Architectures (2011) (1204)
Searching for exotic particles in high-energy physics with deep learning (2014) (1046)
SCRATCH: a protein structure and structural feature prediction server (2005) (902)
Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles (2002) (795)
Mitochondrial mutations in cancer (2006) (776)
Prediction of protein stability changes for single‐site mutations using support vector machines (2005) (760)
Bioinformatics: the machine learning approach (2002) (599)
An enhanced MITOMAP with a global mtDNA mutational phylogeny (2006) (575)
Reprogramming of the Circadian Clock by Nutritional Challenge (2013) (530)
Highly Accurate Machine Fault Diagnosis Using Deep Transfer Learning (2019) (514)
Hidden Markov models of biological primary sequence information. (1994) (504)
Exploiting the past and the future in protein secondary structure prediction (1999) (503)
MITOMAP: a human mitochondrial genome database—2004 update (2004) (488)
Understanding Dropout (2013) (476)
Graph kernels for chemical informatics (2005) (456)
Deep Learning Localizes and Identifies Polyps in Real Time With 96% Accuracy in Screening Colonoscopy. (2018) (445)
How delays affect neural dynamics and learning (1994) (436)
A principled approach to detecting surprising events in video (2005) (436)
A prospective analysis of the Ab response to Plasmodium falciparum before and after a malaria season by protein microarray (2010) (413)
Learning Activation Functions to Improve Deep Neural Networks (2014) (412)
Improved Statistical Inference from DNA Microarray Data Using Analysis of Variance and A Bayesian Statistical Framework (2001) (406)
Deep Architectures and Deep Learning in Chemoinformatics: The Prediction of Aqueous Solubility for Drug-Like Molecules (2013) (403)
Profiling the humoral immune response to infection by using proteome microarrays: high-throughput vaccine and diagnostic antigen discovery. (2005) (400)
Coordination of the transcriptome and metabolome by the circadian clock (2012) (364)
Global landscape of recent inferred Darwinian selection for Homo sapiens (2006) (347)
A Tandem Affinity Tag for Two-step Purification under Fully Denaturing Conditions (2006) (342)
SOLpro: accurate sequence-based prediction of protein solubility (2009) (340)
Inferring Ground Truth from Subjective Labelling of Venus Images (1994) (338)
Global Gene Expression Profiling in Escherichia coli K12 (2003) (330)
SSpro/ACCpro 5: almost perfect prediction of protein secondary structure and relative solvent accessibility using profiles, machine learning and structural similarity (2014) (319)
Muscle insulin sensitivity and glucose metabolism are controlled by the intrinsic muscle clock★ (2013) (310)
Deep architectures for protein contact map prediction (2012) (279)
Learning in linear neural networks: a survey (1995) (277)
Development of a Novel Cross-linking Strategy for Fast and Accurate Identification of Cross-linked Peptides of Protein Complexes* (2010) (277)
A survey, classification and comparative analysis of medium access control protocols for ad hoc networks (2004) (275)
High-throughput prediction of protein antigenicity using protein microarray data (2010) (274)
Profiling humoral immune responses to P. falciparum infection with protein microarrays (2008) (264)
Prediction of coordination number and relative solvent accessibility in proteins (2002) (263)
Of bits and wows: A Bayesian theory of surprise with applications to attention (2010) (263)
The architecture of pre-mRNAs affects mechanisms of splice-site pairing. (2005) (260)
The dropout learning algorithm (2014) (258)
Deep-Learning Convolutional Neural Networks Accurately Classify Genetic Mutations in Gliomas (2018) (244)
Countering GATTACA: efficient and secure testing of fully-sequenced human genomes (2011) (242)
Sourcerer: a search engine for open source code supporting structure-based search (2006) (242)
Improved residue contact prediction using support vector machines and a large feature set (2007) (241)
DNA Microarrays and Gene Expression - From Experiments to Data Analysis and Modeling (2002) (240)
The Biology of Eukaryotic Promoter Prediction - A Review (1999) (237)
Partitioning Circadian Transcription by SIRT6 Leads to Segregated Control of Cellular Metabolism (2014) (236)
A machine learning information retrieval approach to protein fold recognition (2006) (226)
Gradient descent learning algorithm overview: a general dynamical systems perspective (1995) (225)
PEPITO: improved discontinuous B-cell epitope prediction using multiple distance thresholds and half sphere exposure (2008) (222)
The Principled Design of Large-Scale Recursive Neural Network Architectures--DAG-RNNs and the Protein Structure Prediction Problem (2003) (216)
Sourcerer: mining and searching internet-scale software repositories (2009) (211)
The Neuron-specific Chromatin Regulatory Subunit BAF53b is Necessary for Synaptic Plasticity and Memory (2013) (211)
Accurate Prediction of Protein Disordered Regions by Mining Protein Structure Data (2005) (208)
Atlas of Circadian Metabolism Reveals System-wide Coordination and Communication between Clocks (2018) (208)
Adaptive Low Power Listening for Wireless Sensor Networks (2007) (200)
Jet Substructure Classification in High-Energy Physics with Deep Neural Networks (2016) (198)
Kernels for small molecules and the prediction of mutagenicity, toxicity and anti-cancer activity (2005) (198)
Circadian clock regulates the host response to Salmonella (2013) (196)
Deep Underground Neutrino Experiment (DUNE), Far Detector Technical Design Report, Volume II: DUNE Physics (2020) (187)
Lung Adenocarcinoma Distally Rewires Hepatic Circadian Homeostasis (2016) (185)
Deep autoencoder neural networks for gene ontology annotation predictions (2014) (182)
Parameterized neural networks for high-energy physics (2016) (181)
A Burkholderia pseudomallei protein microarray reveals serodiagnostic and cross-reactive antigens (2009) (180)
ChemDB: a public database of small molecules and related chemoinformatics resources (2005) (171)
Modeling the Internet and the Web: Probabilistic Method and Algorithms (2003) (168)
Neural Networks for Fingerprint Recognition (1993) (168)
First measurement of neutrino oscillation parameters using neutrinos and antineutrinos by NOvA. (2019) (166)
COBEpro: a novel system for predicting continuous B-cell epitopes. (2009) (165)
Beep: 3D indoor positioning using audible sound (2005) (164)
Extensive gene gain associated with adaptive evolution of poxviruses (2003) (163)
Jet flavor classification in high-energy physics with deep neural networks (2016) (161)
MotifMap: integrative genome-wide maps of regulatory motif sites for model species (2011) (158)
Prediction of contact maps by GIOHMMs and recurrent neural networks using lateral propagation from all four cardinal corners (2002) (158)
Defining the Independence of the Liver Circadian Clock (2019) (158)
Cyber-T web server: differential analysis of high-throughput data (2012) (155)
Detecting Cardiovascular Disease from Mammograms With Deep Learning (2017) (153)
A Genome-Wide Proteome Array Reveals a Limited Set of Immunogens in Natural Infections of Humans and White-Footed Mice with Borrelia burgdorferi (2008) (152)
Global gene expression profiling in Escherichia coli K12: effects of oxygen availability and ArcA. (2005) (151)
DNA microarrays and gene expression (2002) (147)
Guidelines for Genome-Scale Analysis of Biological Rhythms (2017) (146)
Sterile Protective Immunity to Malaria is Associated with a Panel of Novel P. falciparum Antigens* (2011) (144)
Learning to Predict Chemical Reactions (2011) (141)
A theory of aspects as latent topics (2008) (141)
Large‐scale prediction of disulphide bridges using kernel methods, two‐dimensional recursive neural networks, and weighted graph matching (2005) (141)
Enforcing Analytic Constraints in Neural Networks Emulating Physical Systems. (2019) (137)
Global gene expression profiling in Escherichia coli K12. The effects of leucine-responsive regulatory protein. (2002) (135)
Circadian acetylome reveals regulation of mitochondrial metabolic pathways (2013) (135)
Three-stage prediction of protein ?-sheets by neural networks, alignments and graph algorithms (2005) (135)
Smooth On-Line Learning Algorithms for Hidden Markov Models (1994) (132)
Differential analysis of DNA microarray gene expression data (2003) (131)
Distinct Circadian Signatures in Liver and Gut Clocks Revealed by Ketogenic Diet. (2017) (130)
MotifMap: a human genome-wide map of candidate regulatory motif sites (2009) (129)
Time of Exercise Specifies the Impact on Muscle Metabolic Pathways and Systemic Energy Homeostasis. (2019) (127)
Modeling The Internet And The Web (2003) (125)
On Normal Approximations of Distributions in Terms of Dependency Graphs (1989) (125)
The Stability and Complexity of Antibody Responses to the Major Surface Antigen of Plasmodium falciparum Are Associated with Age in a Malaria Endemic Area* (2011) (121)
Solving the Rubik’s cube with deep reinforcement learning and search (2019) (118)
ReactionPredictor: Prediction of Complex Chemical Reactions at the Mechanistic Level Using Machine Learning (2012) (118)
Mining concepts from code with probabilistic topic models (2007) (116)
Leptin engages a hypothalamic neurocircuitry to permit survival in the absence of insulin. (2013) (116)
Decorrelated jet substructure tagging using adversarial neural networks (2017) (113)
Machine Learning Methods for Protein Structure Prediction (2008) (111)
MITOMASTER: a bioinformatics tool for the analysis of mitochondrial DNA sequences (2009) (111)
ChemDB update - full-text search and virtual chemical space (2007) (111)
DOMpro: Protein Domain Prediction Using Profiles, Secondary Structure, Relative Solvent Accessibility, and Recursive Neural Networks (2006) (111)
Battery Lifetime Estimation and Optimization for Underwater Sensor Networks (2004) (111)
Oreo: detection of clones in the twilight zone (2018) (110)
Computing with Arrays of Coupled Oscillators: An Application to Preattentive Texture Discrimination (1990) (110)
Data structures and compression algorithms for genomic sequence data (2009) (109)
Gut microbiota directs PPARγ‐driven reprogramming of the liver circadian clock by nutritional challenge (2016) (107)
Structure-based inhibitor design of AccD5, an essential acyl-CoA carboxylase carboxyltransferase domain of Mycobacterium tuberculosis. (2006) (106)
CircadiOmics: integrating circadian genomics, transcriptomics, proteomics and metabolomics (2012) (105)
Why are complementary DNA strands symmetric? (2002) (105)
Cycles in spatial and temporal chromosomal organization driven by the circadian clock (2013) (105)
Deep learning for chemical reaction prediction (2018) (104)
Development and Validation of a Deep Neural Network Model for Prediction of Postoperative In-hospital Mortality (2018) (103)
Long-baseline neutrino oscillation physics potential of the DUNE experiment (2020) (102)
A CROC stronger than ROC: measuring, visualizing and optimizing early retrieval (2010) (102)
Volume I. Introduction to DUNE (2020) (99)
DNA structure in human RNA polymerase II promoters. (1998) (99)
Oscillations and Synchronizations in Neural Networks: an Exploration of the Labeling Hypothesis (1991) (98)
Enhanced Higgs boson to τ(+)τ(-) search with deep learning. (2014) (98)
Identification of humoral immune responses in protein microarrays using DNA microarray data analysis techniques (2006) (98)
A multi-resolution approach for spinal metastasis detection using deep Siamese neural networks (2017) (96)
Population-wide analysis of differences in disease progression patterns in men and women (2019) (95)
CodeGenie: using test-cases to search and reuse source code (2007) (93)
Fasting Imparts a Switch to Alternative Daily Pathways in Liver and Muscle. (2018) (93)
Retroviruses and yeast retrotransposons use overlapping sets of host genes. (2005) (92)
Bounds and Algorithms for Fast Exact Searches of Chemical Fingerprints in Linear and Sublinear Time (2007) (91)
Mitochondrial Mutations and Polymorphisms in Psychiatric Disorders (2012) (91)
From protein microarrays to diagnostic antigen discovery: a study of the pathogen Francisella tularensis (2007) (89)
Prospects for beyond the Standard Model physics searches at the Deep Underground Neutrino Experiment (2020) (88)
Epigenetic regulation of the circadian gene Per1 contributes to age-related changes in hippocampal memory (2018) (86)
When is Chemical Similarity Significant? The Statistical Distribution of Chemical Similarity Scores and Its Extreme Values (2010) (83)
Computational Prediction and Experimental Verification of New MAP Kinase Docking Sites and Substrates Including Gli Transcription Factors (2010) (81)
An Application of Latent Dirichlet Allocation to Analyzing Software Evolution (2008) (79)
Naturally occurring nucleosome positioning signals in human exons and introns. (1996) (79)
Modeling and optimization of UWB communication networks through a flexible cost function (2002) (79)
GRHL3/GET1 and Trithorax Group Members Collaborate to Activate the Epidermal Progenitor Differentiation Program (2012) (77)
Mathematical Correction for Fingerprint Similarity Measures to Improve Chemical Retrieval (2007) (76)
Deep Underground Neutrino Experiment (DUNE) Near Detector Conceptual Design Report (2021) (74)
Serological Profiling of a Candida albicans Protein Microarray Reveals Permanent Host-Pathogen Interplay and Stage-Specific Responses during Candidemia (2010) (73)
Neural networks, orientations of the hypercube, and algebraic threshold functions (1988) (73)
Supernova neutrino burst detection with the Deep Underground Neutrino Experiment (2020) (71)
Bidirectional Dynamics for Protein Secondary Structure Prediction (2001) (71)
A Normal Approximation for the Number of Local Maxima of a Random Function on a Graph (1989) (71)
Deep Learning in Biomedical Data Science (2018) (69)
TMBpro: secondary structure, beta-contact and tertiary structure prediction of transmembrane beta-barrel proteins (2008) (69)
Sherpa: Robust Hyperparameter Optimization for Machine Learning (2020) (68)
Mining Eclipse Developer Contributions via Author-Topic Models (2007) (68)
Modeling the Internet and the Web: Probabilistic Methods and Algorithms: Baldi/Probabilistic (2002) (68)
A theory of local learning, the learning channel, and the optimality of backpropagation (2015) (66)
Sequence Assembly of Yarrowia lipolytica Strain W29/CLIB89 Shows Transposable Element Diversity (2016) (65)
Assessment of predictions submitted for the CASP7 domain prediction category (2007) (65)
LineUp: statistical detection of chromosomal homology with application to plant comparative genomics. (2003) (65)
Discovery of Power-Laws in Chemical Space (2008) (64)
Characterization of Prokaryotic and Eukaryotic Promoters Using Hidden Markov Models (1996) (63)
Deep Underground Neutrino Experiment (DUNE), Far Detector Technical Design Report, Volume IV Far Detector Single-phase Technology (2020) (62)
First results on ProtoDUNE-SP liquid argon time projection chamber performance from a beam test at the CERN Neutrino Platform (2020) (62)
Complex-Valued Autoencoders (2011) (61)
Computational and single-molecule force studies of a macro domain protein reveal a key molecular determinant for mechanical stability (2010) (60)
Improved prediction of the number of residue contacts in proteins by recurrent neural networks (2001) (60)
User contribution and trust in Wikipedia (2009) (60)
Circadian Control of Fatty Acid Elongation by SIRT1 Protein-mediated Deacetylation of Acetyl-coenzyme A Synthetase 1* (2014) (59)
Learning in the machine: Random backpropagation and the deep learning channel (2016) (58)
Genomic splice-site analysis reveals frequent alternative splicing close to the dominant splice site. (2006) (57)
Sequence analysis by additive scales: DNA structure for sequences and repeats of all lengths (2000) (57)
Modeling user reputation in wikis (2010) (57)
One- to Four-Dimensional Kernels for Virtual Screening and the Prediction of Physical, Chemical, and Biological Properties (2007) (56)
Mapping the Structural Topology of the Yeast 19S Proteasomal Regulatory Particle Using Chemical Cross-linking and Probabilistic Modeling* (2012) (56)
Hybrid Modeling, HMM/NN Architectures, and Protein Applications (1996) (55)
Genome-Wide Identification of Bcl11b Gene Targets Reveals Role in Brain-Derived Neurotrophic Factor Signaling (2011) (55)
Large-Scale Prediction of Disulphide Bond Connectivity (2004) (54)
No Electron Left Behind: A Rule-Based Expert System To Predict Chemical Reactions and Reaction Mechanisms (2009) (54)
Influence Relevance Voting: An Accurate And Interpretable Virtual High Throughput Screening Method (2009) (53)
Metabolic changes associated with methionine stress sensitivity in MDA-MB-468 breast cancer cells (2016) (53)
Distribution patterns of over-represented k-mers in non-coding yeast DNA (2002) (53)
Contrastive Learning and Neural Oscillations (1991) (53)
Atlas of exercise metabolism reveals time-dependent signatures of metabolic homeostasis. (2020) (53)
Volume IV. The DUNE far detector single-phase technology (2020) (53)
ICBS: a database of interactions between protein chains mediated by ?-sheet formation (2004) (53)
UWB ad-hoc networks (2002) (52)
ClusterCAD: a computational platform for type I modular polyketide synthase design (2017) (52)
What time is it? Deep learning approaches for circadian rhythms (2016) (52)
Biomimetic Design of Protein Nanomaterials for Hydrophobic Molecular Transport (2012) (52)
Data structures and compression algorithms for high-throughput sequencing technologies (2010) (52)
Comparative Circadian Metabolomics Reveal Differential Effects of Nutritional Challenge in the Serum and Liver* (2015) (52)
SIDEpro: A novel machine learning approach for the fast and accurate prediction of side‐chain conformations (2012) (52)
Visual adaptation and novelty responses in the superior colliculus (2011) (51)
Localization of off-the-shelf mobile devices using audible sound: architectures, protocols and performance assessment (2006) (51)
A Fortran-Keras Deep Learning Bridge for Scientific Computing (2020) (50)
SourcererDB: An aggregated repository of statically analyzed and cross-linked open source Java projects (2009) (49)
Lossless Compression of Chemical Fingerprints Using Integer Entropy Codes Improves Storage and Retrieval (2007) (49)
A WNT/p21 Circuit Directed by the C-Clamp, a Sequence-Specific DNA Binding Domain in TCFs (2012) (49)
Matching Protein b-Sheet Partners by Feedforward and Recurrent Neural Networks (2000) (48)
Synergies Between Quantum Mechanics and Machine Learning in Reaction Prediction (2016) (46)
Deep Learning Analysis of Vibrational Spectra of Bacterial Lysate for Rapid Antimicrobial Susceptibility Testing. (2020) (46)
Functional census of mutation sequence spaces: the example of p53 cancer rescue mutants (2006) (46)
U-MAC: a proactive and adaptive UWB medium access control protocol (2005) (46)
SIRT6 Suppresses Cancer Stem-like Capacity in Tumors with PI3K Activation Independently of Its Deacetylase Activity (2017) (44)
Combining protein secondary structure prediction models with ensemble methods of optimal complexity (2004) (43)
Identification of Immunodominant Antigens by Probing a Whole Chlamydia trachomatis Open Reading Frame Proteome Microarray Using Sera from Immunized Mice (2010) (43)
Temporal Evolution of Generalization during Learning in Linear Networks (1991) (43)
The capacity of feedforward neural networks (2019) (43)
Identification of immunodominant antigens of Chlamydia trachomatis using proteome microarrays. (2010) (42)
Bioinformatics - the machine learning approach (2. ed.) (2001) (42)
The DNA modification N6-methyl-2’-deoxyadenosine (m6dA) drives activity-induced gene expression and is required for fear extinction (2019) (42)
Large Scale Immune Profiling of Infected Humans and Goats Reveals Differential Recognition of Brucella melitensis Antigens (2010) (41)
A GRHL3-regulated repair pathway suppresses immune-mediated epidermal hyperplasia. (2014) (41)
Mapping the Protein Interaction Network of the Human COP9 Signalosome Complex Using a Label-free QTAX Strategy* (2012) (40)
Speeding Up Chemical Database Searches Using a Proximity Filter Based on the Logical Exclusive OR (2008) (40)
Deep Spatio-Temporal Architectures and Learning for Protein Structure Prediction (2012) (40)
Deep Learning for Drug Discovery and Cancer Research: Automated Analysis of Vascularization Images (2019) (39)
Mining the coherence of GNOME bug reports with statistical topic models (2009) (39)
Hidden Markov Models of the G-Protein-Coupled Receptor Family (1994) (39)
Longitudinal Monitoring of Biofilm Formation via Robust Surface-Enhanced Raman Scattering Quantification of Pseudomonas aeruginosa-Produced Metabolites. (2018) (39)
ENERGY-AWARE ADAPTIVE LOW POWER LISTENING FOR SENSOR NETWORKS (2005) (39)
Mitochondrial Mutations in Subjects with Psychiatric Disorders (2015) (39)
A bottom-up model of spatial attention predicts human error patterns in rapid scene recognition. (2007) (37)
An automated machine learning-based model predicts postoperative mortality using readily-extractable preoperative electronic health record data. (2019) (37)
The TCF C-clamp DNA binding domain expands the Wnt transcriptome via alternative target recognition (2014) (37)
Linear Learning: Landscapes and Algorithms (1988) (36)
The fixed-size Luria-Delbruck model with a nonzero death rate. (2007) (36)
Deep Underground Neutrino Experiment (DUNE), Far Detector Technical Design Report, Volume III DUNE Far Detector Technical Coordination (2020) (36)
The circadian dynamics of the hippocampal transcriptome and proteome is altered in experimental temporal lobe epilepsy (2020) (35)
Software Acoustic Modems for Short Range Mote-based Underwater Sensor Networks (2006) (35)
Pipeline PSRO: A Scalable Approach for Finding Approximate Nash Equilibria in Large Games (2020) (35)
A Computational Theory of Surprise (2002) (34)
Computational Applications of DNA Structural Scales (1998) (34)
Parameterized Machine Learning for High-Energy Physics (2016) (33)
Statistical detection of chromosomal homology using shared-gene density alone (2005) (33)
The Absence of Favorable Aromatic Interactions between β-Sheet Peptides (2005) (33)
A Framework for Modeling Sensor Networks (2004) (33)
Ty3 Capsid Mutations Reveal Early and Late Functions of the Amino-Terminal Domain (2007) (32)
Solving the Rubik's Cube Without Human Knowledge (2018) (32)
Matching protein beta-sheet partners by feedforward and recurrent neural networks. (2000) (32)
Revealing Fundamental Physics from the Daya Bay Neutrino Experiment Using Deep Neural Networks (2016) (32)
Polymodal Sensory Function of the Caenorhabditis elegans OCR-2 Channel Arises from Distinct Intrinsic Determinants within the Protein and Is Selectively Conserved in Mammalian TRPV Proteins (2005) (32)
Neutrino interaction classification with a convolutional neural network in the DUNE far detector (2020) (31)
Retrotransposon profiling of RNA polymerase III initiation sites. (2012) (31)
Hashing Algorithms and Data Structures for Rapid Searches of Fingerprint Vectors (2010) (31)
Deep Learning, Dark Knowledge, and Dark Matter (2014) (31)
The pervasiveness and plasticity of circadian oscillations: the coupled circadian-oscillators framework (2015) (30)
Prediction of Contact Maps by Recurrent Neural Network Architectures and Hidden Context Propagation From All Four Cardinal Corners (2002) (30)
Hidden Markov Models in Molecular Biology: New Algorithms and Applications (1992) (30)
Phylogenetic analysis, genome evolution and the rate of gene gain in the Herpesviridae. (2007) (30)
Mining Internet-Scale Software Repositories (2007) (30)
S-adenosyl-l-homocysteine hydrolase links methionine metabolism to the circadian clock and chromatin remodeling (2020) (29)
Combining docking site and phosphosite predictions to find new substrates: identification of smoothelin-like-2 (SMTNL2) as a c-Jun N-terminal kinase (JNK) substrate. (2013) (29)
Learning to play Go using recursive neural networks (2008) (29)
SELECTpro: effective protein model selection using a structure-based energy function resistant to BLUNDERs (2008) (29)
Mir-132/212 is required for maturation of binocular matching of orientation preference and depth perception (2017) (29)
Asymptotic normality of some Graph-Related statistics (1989) (28)
SVM and pattern-enriched common fate graphs for the game of go (2005) (28)
Synthesis Explorer : A Chemical Reaction Tutorial System for Organic Synthesis Design and Mechanism Prediction (2008) (28)
On the Use of Bayesian Methods for Evaluating Compartmental Neural Models (1998) (28)
CircadiOmics: circadian omic web portal (2018) (28)
Improved energy reconstruction in NOvA with regression convolutional neural networks (2018) (28)
Erratum to "Muscle insulin sensitivity and glucose metabolism are controlled by the intrinsic muscle clock" [Mol Metab 3 (2014) 29-41]. (2014) (28)
A 3-Dimensional Trimeric β-Barrel Model for Chlamydia MOMP Contains Conserved and Novel Elements of Gram-Negative Bacterial Porins (2013) (28)
Distinct metabolic adaptation of liver circadian pathways to acute and chronic patterns of alcohol intake (2019) (27)
TMBpro : Secondary Structure , β-contact , and Tertiary Structure Prediction of Transmembrane β-Barrel Proteins (2007) (26)
Modular DAG-RNN Architectures for Assembling Coarse Protein Structures (2006) (26)
Structural basis for triplet repeat disorders: a computational analysis (1999) (26)
Data-Driven High-Throughput Prediction of the 3-D Structure of Small Molecules: Review and Progress (2011) (25)
Sherpa: Hyperparameter Optimization for Machine Learning Models (2018) (25)
Programmed interactions in higher-order neural networks: Maximal capacity (1991) (25)
XDO: A Double Oracle Algorithm for Extensive-Form Games (2021) (25)
Large scale study of multiple-molecule queries (2009) (25)
Speeding Up Chemical Searches Using the Inverted Index: The Convergence of Chemoinformatics and Text Search Methods (2012) (25)
On the convergence of a clustering algorithm for protein-coding regions in microbial genomes (2000) (24)
Accurate and efficient target prediction using a potency-sensitive influence-relevance voter (2015) (24)
ReactionMap: An Efficient Atom-Mapping Algorithm for Chemical Reactions (2013) (24)
Solving the Rubik's Cube with Approximate Policy Iteration (2018) (24)
Classifying shoulder implants in X-ray images using deep learning (2020) (23)
Training and Validation of Deep Neural Networks for the Prediction of 90-Day Post-Liver Transplant Mortality Using UNOS Registry Data. (2020) (23)
Permutationless Many-Jet Event Reconstruction with Symmetry Preserving Attention Networks (2020) (23)
Software Modems for Underwater Sensor Networks (2007) (23)
Hippocampal gene expression patterns linked to late-life physical activity oppose age and AD-related transcriptional decline (2019) (22)
ISMB 2016 Proceedings (2016) (22)
Computing with Arrays of Coupled Oscillators (1990) (22)
Atmospheric Oxidation of Squalene: Molecular Study Using COBRA Modeling and High-Resolution Mass Spectrometry. (2015) (22)
Computing with Arrays of Bell-Shaped and Sigmoid Functions (1990) (22)
On the relationship between deterministic and probabilistic directed Graphical models: From Bayesian networks to recursive neural networks (2005) (22)
Genome Architecture Mediates Transcriptional Control of Human Myogenic Reprogramming (2018) (22)
Mutation of neuron-specific chromatin remodeling subunit BAF53b: rescue of plasticity and memory by manipulating actin remodeling. (2017) (21)
The Shattered Self - The End of Natural Evolution (2001) (21)
A Scalable Machine Learning Approach to Go (2006) (21)
Learning in the machine: The symmetries of the deep learning channel (2017) (21)
VIRALpro: a tool to identify viral capsid and tail sequences (2016) (21)
Experiment Simulation Configurations Approximating DUNE TDR (2021) (20)
An Intersection Inequality Sharper than the Tanimoto Triangle Inequality for Efficiently Searching Large Databases (2009) (20)
From Reinforcement Learning to Deep Reinforcement Learning: An Overview (2017) (20)
Functional Conservation of lncRNA JPX despite Sequence and Structural Divergence. (2020) (20)
Rationally selected single-site mutants of the Thermoascus aurantiacus endoglucanase increase hydrolytic activity on cellulosic substrates. (2012) (20)
SPLASH: Learnable Activation Functions for Improving Accuracy and Adversarial Robustness (2020) (20)
Learning in the Machine: Random Backpropagation and the Learning Channel (2016) (19)
A Machine-Learning Strategy for Protein Analysis (2002) (19)
Searching for Higgs Boson Decay Modes with Deep Learning (2014) (19)
MotifMap‐RNA: a genome‐wide map of RBP binding sites (2017) (19)
Curiosity-Driven Multi-Criteria Hindsight Experience Replay (2019) (19)
White Paper: ARIANNA-200 high energy neutrino telescope (2020) (19)
Global Gene Expression Profiling in Escherichia coli K12 (2005) (19)
BLASTing small molecules—statistics and extreme statistics of chemical similarity scores (2008) (19)
Reshaping circadian metabolism in the suprachiasmatic nucleus and prefrontal cortex by nutritional challenge (2020) (19)
Adjusting neutrino interaction models and evaluating uncertainties using NOvA near detector data (2020) (17)
Flexibility of the genetic code with respect to DNA structure (2001) (17)
Embeddings of ultrametric spaces in finite dimensional structures (1987) (17)
Development and validation of a deep neural network model to predict postoperative mortality, acute kidney injury, and reintubation using a single feature set (2020) (17)
Function and Regulation of Cph2 in Candida albicans (2015) (17)
A Machine Learning Approach to Predict Chemical Reactions (2011) (17)
Integration of feeding behavior by the liver circadian clock reveals network dependency of metabolic rhythms (2021) (17)
Development and validation of an interpretable neural network for prediction of postoperative in-hospital mortality (2021) (17)
The Shattered Self (2001) (17)
Small-Molecule 3D Structure Prediction Using Open Crystallography Data (2013) (16)
A machine learning strategy for protein analysis (2002) (16)
Gap Junction Channels of Innexins and Connexins: Relations and Computational Perspectives (2019) (16)
How pervasive are circadian oscillations? (2014) (16)
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AN EXPERIMENT FOR ZSCAN EFFICIENCY IN SURFACE MONITORING (2009) (0)
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EXPLORING CHEMICAL SPACE WITH COMPUTERS: INFORMATICS CHALLENGES FOR AI AND MACHINE LEARNING (2006) (0)
The inner and outer approaches to the design of recursive neural architectures (2017) (0)
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Metabolomic and transcriptomic signatures of prenatal excessive methionine support nature rather than nurture in schizophrenia pathogenesis (2020) (0)
Deep Learning from Four Vectors (2022) (0)
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Interpretable Joint Event-Particle Reconstruction for Neutrino Physics at NOvA with Sparse CNNs and Transformers (2023) (0)
Real-time reconstruction of high energy, ultrafast laser pulses using deep learning (2022) (0)
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Epigenetic regulation of the circadian gene Per1 contributes to age-related changes in hippocampal memory (2018) (0)
Light Entrains Diurnal Cha nges in Insulin Sensitivity of Skeletal Muscle via Ventromedial Hypothalamic Neurons Graphical (2019) (0)
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Attention: Bits Versus Wows (2005) (0)
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DNA Microarrays and Gene Expression: Experimental protocols (2002) (0)
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Detecting Pulmonary Coccidioidomycosis (Valley fever) with Deep Convolutional Neural Networks (2021) (0)
Deep learning techniques for a real-time neutrino classifier (2021) (0)
Population dynamics of transposable element insertions in Arabidopsis thaliana and Arabidopsis lyrata (2005) (0)

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