Purvesh Khatri
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Computer Science
Purvesh Khatri's Degrees
- PhD Computer Science Stanford University
- Masters Computer Science Stanford University
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(Suggest an Edit or Addition)Purvesh Khatri's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges (2012) (1325)
- A systems biology approach for pathway level analysis. (2007) (1054)
- Ontological analysis of gene expression data: current tools, limitations, and open problems (2005) (906)
- A novel signaling pathway impact analysis (2009) (901)
- Systems biological assessment of immunity to mild versus severe COVID-19 infection in humans (2020) (778)
- Reliability and reproducibility issues in DNA microarray measurements. (2006) (617)
- Global functional profiling of gene expression. (2003) (520)
- Spermatozoal RNA profiles of normal fertile men (2002) (504)
- Profiling gene expression using onto-express. (2002) (484)
- Cell type–specific gene expression differences in complex tissues (2010) (460)
- NetPath: a public resource of curated signal transduction pathways (2010) (449)
- Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate (2003) (364)
- Global functional profiling of gene expression ? ? This work was funded in part by a Sun Microsystem (2003) (361)
- Combined inhibition of BET family proteins and histone deacetylases as a potential epigenetics-based therapy for pancreatic ductal adenocarcinoma (2015) (311)
- SMYD3 links lysine methylation of MAP3K2 to Ras-driven cancer (2014) (309)
- A drug repositioning approach identifies tricyclic antidepressants as inhibitors of small cell lung cancer and other neuroendocrine tumors. (2013) (301)
- Genome-wide expression for diagnosis of pulmonary tuberculosis: a multicohort analysis. (2016) (294)
- A comprehensive time-course–based multicohort analysis of sepsis and sterile inflammation reveals a robust diagnostic gene set (2015) (255)
- A clinically meaningful metric of immune age derived from high-dimensional longitudinal monitoring (2019) (245)
- Robust classification of bacterial and viral infections via integrated host gene expression diagnostics (2016) (241)
- Onto-Tools: an ensemble of web-accessible, ontology-based tools for the functional design and interpretation of high-throughput gene expression experiments (2004) (235)
- Single-Cell Chromatin Modification Profiling Reveals Increased Epigenetic Variations with Aging (2018) (223)
- Systems vaccinology of the BNT162b2 mRNA vaccine in humans (2021) (213)
- CD22 blockade restores homeostatic microglial phagocytosis in aging brains (2019) (206)
- Antigen Identification for Orphan T Cell Receptors Expressed on Tumor-Infiltrating Lymphocytes (2017) (203)
- A common rejection module (CRM) for acute rejection across multiple organs identifies novel therapeutics for organ transplantation (2013) (194)
- Unsupervised Analysis of Transcriptomics in Bacterial Sepsis Across Multiple Datasets Reveals Three Robust Clusters (2018) (170)
- A multi-cohort study of the immune factors associated with M. tuberculosis infection outcomes (2018) (156)
- Integrated, Multi-cohort Analysis Identifies Conserved Transcriptional Signatures across Multiple Respiratory Viruses (2015) (150)
- A community approach to mortality prediction in sepsis via gene expression analysis (2018) (144)
- A meta-analysis of lung cancer gene expression identifies PTK7 as a survival gene in lung adenocarcinoma. (2014) (127)
- Cell-centred meta-analysis reveals baseline predictors of anti-TNFα non-response in biopsy and blood of patients with IBD (2018) (127)
- Increased monocyte count as a cellular biomarker for poor outcomes in fibrotic diseases: a retrospective, multicentre cohort study (2019) (126)
- A Peripheral Blood Diagnostic Test for Acute Rejection in Renal Transplantation (2012) (119)
- Recent additions and improvements to the Onto-Tools (2005) (118)
- Methods to increase reproducibility in differential gene expression via meta-analysis (2016) (115)
- Gene annotation bias impedes biomedical research (2017) (106)
- Multicohort analysis reveals baseline transcriptional predictors of influenza vaccination responses (2017) (105)
- Onto-Tools: new additions and improvements in 2006 (2007) (104)
- Leveraging heterogeneity across multiple datasets increases cell-mixture deconvolution accuracy and reduces biological and technical biases (2018) (104)
- Complement pathway amplifies caspase-11–dependent cell death and endotoxin-induced sepsis severity (2016) (103)
- Discovery of Distinct Immune Phenotypes Using Machine Learning in Pulmonary Arterial Hypertension (2019) (102)
- Host-response-based gene signatures for tuberculosis diagnosis: A systematic comparison of 16 signatures (2019) (102)
- An integrative approach unveils FOSL1 as an oncogene vulnerability in KRAS-driven lung and pancreatic cancer (2017) (100)
- Emergent high fatality lung disease in systemic juvenile arthritis (2019) (97)
- Progressive histological damage in renal allografts is associated with expression of innate and adaptive immunity genes. (2011) (97)
- Empowering Multi-Cohort Gene Expression Analysis to Increase Reproducibility (2016) (95)
- Cross-species functional analysis of cancer-associated fibroblasts identifies a critical role for CLCF1 and IL-6 in non-small cell lung cancer in vivo. (2012) (94)
- T cell-inducing vaccine durably prevents mucosal SHIV infection even with lower neutralizing antibody titers (2020) (92)
- Integrated multi-cohort transcriptional meta-analysis of neurodegenerative diseases (2014) (83)
- Non-HLA antibodies to immunogenic epitopes predict the evolution of chronic renal allograft injury. (2012) (83)
- The center for expanded data annotation and retrieval (2015) (82)
- Biomarkers in solid organ transplantation: establishing personalized transplantation medicine (2011) (81)
- Assessment of Validity of a Blood-Based 3-Gene Signature Score for Progression and Diagnosis of Tuberculosis, Disease Severity, and Treatment Response (2018) (81)
- Interpretation of biological experiments changes with evolution of the Gene Ontology and its annotations (2018) (76)
- Mechanisms of innate and adaptive immunity to the Pfizer-BioNTech BNT162b2 vaccine (2022) (72)
- Benchmarking Sepsis Gene Expression Diagnostics Using Public Data* (2017) (69)
- A semantic analysis of the annotations of the human genome (2005) (68)
- The single-cell epigenomic and transcriptional landscape of immunity to influenza vaccination (2021) (68)
- Coordination of stress signals by the lysine methyltransferase SMYD2 promotes pancreatic cancer (2016) (63)
- A generalizable 29-mRNA neural-network classifier for acute bacterial and viral infections (2020) (63)
- Integrated, multicohort analysis of systemic sclerosis identifies robust transcriptional signature of disease severity. (2016) (59)
- The immunoregulatory landscape of human tuberculosis granulomas (2022) (58)
- Sex Differences in the Blood Transcriptome Identify Robust Changes in Immune Cell Proportions with Aging and Influenza Infection (2019) (56)
- Chemical Space Mimicry for Drug Discovery (2017) (52)
- Babel's tower revisited: a universal resource for cross-referencing across annotation databases (2006) (49)
- Transcriptomic similarities and differences in host response between SARS-CoV-2 and other viral infections (2020) (47)
- Predicting Novel Human Gene Ontology Annotations Using Semantic Analysis (2010) (46)
- A 20-Gene Set Predictive of Progression to Severe Dengue (2019) (45)
- KLRD1-expressing natural killer cells predict influenza susceptibility (2018) (45)
- Cellular senescence impairs the reversibility of pulmonary arterial hypertension (2020) (44)
- Generalizable Biomarkers in Critical Care: Toward Precision Medicine. (2017) (43)
- A System Biology Approach for the Steady-State Analysis of Gene Signaling Networks (2007) (42)
- Future Research Directions in Pneumonia. NHLBI Working Group Report (2018) (40)
- Unique transcriptomic response to sepsis is observed among patients of different age groups (2017) (40)
- Pregnancy-Induced Alterations in NK Cell Phenotype and Function (2019) (39)
- FHIT, a Novel Modifier Gene in Pulmonary Arterial Hypertension (2019) (36)
- Using gene arrays in diagnosis of rejection (2009) (34)
- Validation of the Sepsis MetaScore for Diagnosis of Neonatal Sepsis (2018) (33)
- Multi-cohort analysis of host immune response identifies conserved protective and detrimental modules associated with severity across viruses (2021) (32)
- Pediatric Sepsis Endotypes Among Adults With Sepsis (2017) (29)
- Multicohort Analysis of Whole-Blood Gene Expression Data Does Not Form a Robust Diagnostic for Acute Respiratory Distress Syndrome (2018) (28)
- Comparison of multiplex meta analysis techniques for understanding the acute rejection of solid organ transplants (2010) (26)
- Diversity in immunogenomics: the value and the challenge (2020) (26)
- Inflammatory macrophage-associated 3-gene signature predicts subclinical allograft injury and graft survival. (2018) (26)
- Single-cell technologies — studying rheumatic diseases one cell at a time (2019) (25)
- New Onto-Tools: Promoter-Express, nsSNPCounter and Onto-Translate (2006) (25)
- Integrated, multi-cohort analysis reveals unified signature of systemic lupus erythematosus. (2020) (23)
- Gene Expression Analysis to Assess the Relevance of Rodent Models to Human Lung Injury (2017) (21)
- Diagnostic Accuracy Study of a Novel Blood-Based Assay for Identification of Tuberculosis in People Living with HIV (2020) (21)
- Single-cell epigenetics - Chromatin modification atlas unveiled by mass cytometry. (2018) (20)
- Comprehensive Validation of the FAIM3:PLAC8 Ratio in Time-matched Public Gene Expression Data. (2015) (19)
- Assessing the functional bias of commercial microarrays using the onto-compare database. (2003) (18)
- REPRESSION OF CTSG, ELANE, AND PRTN3-MEDIATED HISTONE H3 PROTEOLYTIC CLEAVAGE PROMOTES MONOCYTE-TO-MACROPHAGE DIFFERENTIATION (2021) (17)
- Macrophage-derived IL-6 trans-signalling as a novel target in the pathogenesis of bronchopulmonary dysplasia (2021) (17)
- Signatures of immune dysfunction in HIV and HCV infection share features with chronic inflammation in aging and persist after viral reduction or elimination (2021) (17)
- A microarray analysis of the effects of moderate hypothermia and rewarming on gene expression by human hepatocytes (HepG2) (2010) (17)
- Disease characteristics and serological responses in patients with differing severity of COVID-19 infection: A longitudinal cohort study in Dhaka, Bangladesh. (2022) (16)
- Multiplexed imaging of human tuberculosis granulomas uncovers immunoregulatory features conserved across tissue and blood (2020) (14)
- Semantic Analysis of Genome Annotations using Weighting Schemes (2007) (14)
- Blood-based host biomarker diagnostics in active case finding for pulmonary tuberculosis: A diagnostic case-control study (2021) (14)
- Programmable antivirals targeting critical conserved viral RNA secondary structures from influenza A virus and SARS-CoV-2 (2022) (11)
- Integrated, multicohort analysis reveals unified signature of systemic lupus erythematosus (2020) (11)
- Applications of Translational Bioinformatics in Transplantation (2011) (10)
- A B-Cell Gene Signature Correlates With the Extent of Gluten-Induced Intestinal Injury in Celiac Disease (2017) (10)
- Leveraging heterogeneity across multiple data sets increases accuracy of cell-mixture deconvolution and reduces biological and technical biases (2017) (10)
- A comparison of existing tools for ontological analysis of gene expression data (2005) (9)
- Identification of Genomic Signatures for the Design of Assays for the Detection and Monitoring of Anthrax Threats (2004) (9)
- CD38 contributes to human natural killer cell responses through a role in immune synapse formation (2018) (9)
- Profiling of autoantibodies in IgA nephropathy, an integrative antibiomics approach. (2011) (9)
- A molecular atlas of innate immunity to adjuvanted and live attenuated vaccines, in mice (2022) (9)
- Comprehensive Analysis of the Unfolded Protein Response in Breast Cancer Subtypes. (2017) (9)
- Serum proteome analysis of systemic JIA and related lung disease identifies distinct inflammatory programs and biomarkers. (2022) (8)
- A GMR-based assay for quantification of the human response to influenza. (2022) (8)
- iPSC–endothelial cell phenotypic drug screening and in silico analyses identify tyrphostin-AG1296 for pulmonary arterial hypertension (2021) (8)
- An 8-gene machine learning model improves clinical prediction of severe dengue progression (2022) (8)
- Blood transcriptional signatures for tuberculosis diagnosis: a glass half-empty perspective - Authors' reply. (2016) (8)
- Single cell immune profiling in transplantation research (2019) (8)
- A multi-scale integrated analysis identifies KRT8 as a pan-cancer early biomarker (2020) (8)
- CD38 is a key regulator of enhanced NK cell immune responses during pregnancy through its role in immune synapse formation (2018) (8)
- SIMON: Open-Source Knowledge Discovery Platform (2020) (7)
- Mortality prediction in sepsis via gene expression analysis: a community approach (2016) (7)
- High-throughput quantitative histology in systemic sclerosis skin disease using computer vision (2020) (7)
- Identifying uncertainty regions in Support Vector Machines using geometric margin and convex hulls (2008) (7)
- T cell-inducing vaccine durably prevents mucosal SHIV infection even with lower neutralizing antibody titers (2020) (7)
- Early life immunity in the era of systems biology: understanding development and disease (2018) (7)
- Diagnostic accuracy study of a novel blood-based assay# for identification of TB in people living with HIV (2020) (6)
- Evolution of Cytomegalovirus-Responsive T Cell Clonality following Solid Organ Transplantation (2021) (6)
- A novel blood-based assay for treatment monitoring of tuberculosis (2021) (6)
- Increases in ambient air pollutants during pregnancy are linked to increases in methylation of IL4, IL10, and IFNγ (2022) (6)
- Multi-cohort analysis of host immune response identifies conserved protective and detrimental modules associated with severity irrespective of virus (2020) (6)
- Gene Expression–Based Diagnosis of Infections in Critically Ill Patients—Prospective Validation of the SepsisMetaScore in a Longitudinal Severe Trauma Cohort (2021) (6)
- Integrated molecular, clinical, and ontological analysis identifies overlooked disease relationships (2018) (5)
- Comparison of the Transcriptomic Signatures in Pediatric and Adult CML (2020) (5)
- Computational drug repositioning of atorvastatin for ulcerative colitis (2021) (5)
- Rapid GPR183-mediated recruitment of eosinophils to the lung after Mycobacterium tuberculosis infection (2022) (5)
- Meta-Analysis of Continuous Phenotypes Identifies a Gene Signature that Correlates with COPD Disease Status (2017) (4)
- Author Correction: A multi-cohort study of the immune factors associated with M. tuberculosis infection outcomes (2018) (4)
- A 6-mRNA host response classifier in whole blood predicts outcomes in COVID-19 and other acute viral infections (2022) (4)
- Malaria-driven expansion of adaptive-like functional CD56-negative NK cells correlates with clinical immunity to malaria (2023) (4)
- Septic Cardiomyopathy: Getting to the Heart of the Matter. (2017) (4)
- Prospective validation of an 11-gene mRNA host response score for mortality risk stratification in the intensive care unit (2021) (4)
- A Novel Bioinformatics Technique For Predicting Condition-Specific Transcription Factor Binding Sites (2005) (4)
- Functional Consequences of Memory Inflation after Solid Organ Transplantation (2021) (4)
- Integrated multi-cohort transcriptional meta-analysis of neurodegenerative diseases (2014) (4)
- A robust gene expression signature for NASH in liver expression data (2021) (3)
- Hospital-acquired Pneumonia: A Host of Factors. (2016) (3)
- Integrated molecular and clinical analysis for understanding human disease relationships (2017) (3)
- Identification of Distinct Inflammatory Programs and Biomarkers in Systemic Juvenile Idiopathic Arthritis and Related Lung Disease by Serum Proteome Analysis (2022) (3)
- Comparison of the Transcriptomic Signature of Pediatric Vs. Adult CML and Normal Bone Marrow Stem Cells (2018) (3)
- Multicohort Analysis Identifies Monocyte Gene Signatures to Accurately Monitor Subset-Specific Changes in Human Diseases (2021) (3)
- A Human Genome-Wide RNAi Screen Reveals Diverse Modulators that Mediate IRE1α–XBP1 Activation (2018) (3)
- Combined use of metagenomic sequencing and host response profiling for the diagnosis of suspected sepsis (2019) (3)
- P082 A cell-centred meta-analysis reveals baseline predictors of anti-TNFα non-response in biopsy and blood of IBD patients (2018) (3)
- Identification and targeting of a pan-genotypic influenza A virus RNA structure that mediates packaging and disease (2021) (2)
- Extracting cell-type-specific gene expression differences from complex tissues (144.30) (2010) (2)
- Abstract 4610: A drug repositioning approach identifies tricyclic antidepressants as inhibitors of small cell lung cancer and other neuroendocrine tumors (2014) (2)
- Author Correction: The immunoregulatory landscape of human tuberculosis granulomas (2022) (2)
- Cytokine signatures differentiate systemic sclerosis patients at high versus low risk for pulmonary arterial hypertension (2022) (2)
- Response to: ‘Effectiveness and safety of ruxolitinib for the treatment of refractory systemic idiopathic juvenile arthritis like associated with interstitial lung disease: case report’ by Bader-Meunier et al (2020) (2)
- Single-cell analysis of the epigenomic and transcriptional landscape of innate immunity to seasonal and adjuvanted pandemic influenza vaccination in humans (2021) (2)
- Functional Pathway Analysis for Understanding Immunologic Signature of Rejection: Current Approaches and Outstanding Challenges (2011) (2)
- Ancestry-based differences in the immune system are associated with lupus severity (2021) (2)
- A robust host-response-based signature distinguishes bacterial and viral infections across diverse global populations (2022) (2)
- Crosstalk of Histone Modifications in the Healthy Human Immune System (2022) (2)
- Host protease activity classifies pneumonia etiology (2022) (2)
- Pilot study of a novel serum mRNA gene panel for diagnosis of acute septic arthritis (2019) (2)
- Single-cell RNA-seq methods to interrogate virus-host interactions (2022) (2)
- Mechanisms driving altered v delta 2+gamma delta t cell function during recurrent malaria infection (2019) (2)
- Complementing single-cell RNA-seq using bulk transcriptional profiles (2017) (2)
- Data Heterogeneity: The Enzyme to Catalyze Translational Bioinformatics? (2020) (2)
- Software Tool for Analysis of Variance of DNA Microarray Data (2006) (1)
- Increases in ambient air pollutants during pregnancy are linked to increases in methylation of IL4, IL10, and IFNγ (2022) (1)
- A community approach to mortality prediction in sepsis via gene expression analysis (2018) (1)
- The authors reply. (2017) (1)
- The immunoregulatory landscape of human tuberculosis granulomas (2022) (1)
- Bioconductor’s SPIA package (2009) (1)
- 1002: A COMPREHENSIVE TIME-BASED META-ANALYSIS OF SIRS AND SEPSIS REVEALS A ROBUST DISCRIMINATORY GENE SET (2014) (1)
- Comprehensive multi-cohort transcriptional meta-analysis of muscle diseases identifies a signature of disease severity (2022) (1)
- 630. A 5-mRNA host response whole-blood classifier trained using patients with non-COVID-19 viral infections accurately predicts severity of COVID-19 (2020) (1)
- Abstract B20: Identification of novel biomarkers for early detection of ovarian cancer (2013) (1)
- A Multi-mRNA Prognostic Signature for Anti-TNFα Therapy Response in Patients with Inflammatory Bowel Disease (2021) (1)
- Multisite validation of a host response signature for predicting likelihood of bacterial and viral infections in patients with suspected influenza (2023) (1)
- Multiplex Meta-Analysis of Medulloblastoma Expression Studies with External Controls (2013) (1)
- Gene annotation bias impedes biomedical research (2018) (1)
- The Prognostic Value of Monocyte Count in Idiopathic Pulmonary Fibrosis: A Multi-Omic Cohort Study (2019) (0)
- Systems biological assessment of the temporal dynamics of immunity to a viral infection in the first weeks and months of life (2023) (0)
- 2016. TaqMan Multiplex PCR of a Seven-Gene Host Biomarker to Discriminate Bacterial from Viral Infections (2018) (0)
- A systems biology approach for pathway level analysis data (2007) (0)
- Blood-based host biomarker diagnostics in active case finding for pulmonary tuberculosis: a diagnostic accuracy study (2021) (0)
- Comparison of the Transcriptomic Signatures in Pediatric and Adult CML (2021) (0)
- A multi-cohort study of the immune factors associated with M. tuberculosis infection outcomes (2018) (0)
- Abstract 172: Detection of Novel Cancer Subpopulations Through Integration of Public Microarray Data with Single Cell Gene Expression Profiling. (2015) (0)
- Disease Tolerance Acquired Through Repeated Plasmodium Infection Involves Epigenetic Reprogramming of Innate Immune Cells (2023) (0)
- KLRD1-expressing natural killer cells predict influenza susceptibility (2018) (0)
- Gene Expression Can Robustly Separate Infectious and Non-Infectious Inflammation (2014) (0)
- 2347. Blood Transcriptional Correlates of Vaccine-Induced Protection Against TB in Macaques (2022) (0)
- Gene Expression Analysis of CML Patients across the Age Spectrum (2021) (0)
- Abstract IA02: A drug repositioning approach identifies tricyclic antidepressants as inhibitors of small cell lung cancer. (2014) (0)
- Early life immunity in the era of systems biology: understanding development and disease (2018) (0)
- Interpretation of biological experiments changes with evolution of the Gene Ontology and its annotations (2017) (0)
- Prediction of HLA genotypes from single-cell transcriptome data (2022) (0)
- Validation of a 12-mRNA Score for Mortality Risk Stratification in Critically Ill Patients (2019) (0)
- Abstract 14482: High-Throughput Drug Screening of iPSC-Derived Vascular Cells to Reverse PAH Phenotype (2017) (0)
- Characterising the autoantibody repertoire in systemic sclerosis following myeloablative haematopoietic stem cell transplantation (2023) (0)
- Lamc2 Regulates Key Transcriptional and Targetable Effectors to Support Pancreatic Cancer Growth. (2023) (0)
- Single-Cell ChromatinModification Profiling Reveals Increased Epigenetic Variations with Aging Graphical Abstract Highlights (2018) (0)
- Author Correction: A multi-cohort study of the immune factors associated with M. tuberculosis infection outcomes (2018) (0)
- 2565. A Novel Prognostic Gene Set for the Prediction of Severe Dengue (2018) (0)
- Abstract A41: SOX11 transcriptionally regulates a cytokine-based gene signature in lung cancer-associated fibroblasts (LCAF) to promote tumor growth (2012) (0)
- Abstract PO-089: Identification of a LAMC2-regulated network featuring targetable effectors for dual therapies in pancreatic cancer (2021) (0)
- 1539. A Nine-Gene Blood-Based Signature Meets the World Health Organization Target Product Profiles for Diagnosis of Active Tuberculosis and Predicting Progression from Latent to Active Disease (2022) (0)
- Advances and potential of omics studies for understanding the development of food allergy (2023) (0)
- 521. Similarities and Differences in Transcriptomic Host Response between SARS-CoV-2 and Other Viral Infections (2020) (0)
- A clinically meaningful metric of immune age derived from high-dimensional longitudinal monitoring (2019) (0)
- A Unified Molecular Signature of Systemic Lupus Erythematosus Revealed by Integrated, Multi-Cohort Transcriptomic Analysis (2019) (0)
- A molecular atlas of innate immunity to adjuvanted and live attenuated vaccines, in mice (2022) (0)
- 997: A PARSIMONIOUS TRANSCRIPTIONAL SIGNATURE CAN ROBUSTLY DISTINGUISH VIRAL FROM BACTERIAL INFECTIONS (2015) (0)
- Increasing reproducibility, robustness, and generalizability of biomarker selection from meta-analysis using Bayesian methodology (2022) (0)
- Towards Equitable Patient Subgroup Performance by Gene-Expression-Based Diagnostic Classifiers of Acute Infection (2022) (0)
- Diverse nephron cell type‐specific adaptation to furosemide by morphometry and single cell RNA sequencing (2019) (0)
- Response to: ‘Successful treatment of plasma exchange for refractory systemic juvenile idiopathic arthritis complicated with macrophage activation syndrome and severe lung disease’ by Sato et al (2020) (0)
- A generalizable 29-mRNA neural-network classifier for acute bacterial and viral infections (2020) (0)
- Abstract 449: Transplantation Alters Function and Clonality of Cytomegalovirus-Responsive T Cells (2019) (0)
- Formulating a gene signature for diagnosis of autoimmune and infectious diseases (2021) (0)
- Imputing abundances and inferring direction of associations between histone modifications using neural processes (2022) (0)
- Integration of Next–Generation Sequencing, Viral Sequencing, and Host-Response Profiling for the Diagnosis of Acute Infections (2017) (0)
- LCK Knockdown in Pulmonary Artery Endothelial Cells Impairs BMPR2 Signaling and Potentiates Endothelial to Mesenchymal Transition (2019) (0)
- Inferring direction of associations between histone modifications using a neural processes-based framework (2022) (0)
- Abstract PR002: Cytokines surge in the blood years prior to a cancer diagnosis in elderly individuals (2023) (0)
- An 8-gene machine learning model improves clinical prediction of severe dengue progression (2022) (0)
- Molecular and Clinical Data Integration Identifies an Association Between Decreased Colectomy Rates and Atorvastatin Exposure in Ulcerative Colitis Patients: A Retrospective Cohort Study (2021) (0)
- Computational and Systems Immunology: A Student's Perspective. (2019) (0)
- Integration of Public Microarray Data with Single Cell Gene Expression Profiling Facilitates Identification of Transcriptionally-Defined Subpopulations in Small Cell Lung Cancer (2014) (0)
- Multicohort Analysis of Publicly-available Monocyte Expression Data Identifies Gene Signatures to Accurately Monitor Subset-specific Changes in Human Diseases (2020) (0)
- The authors reply. (2017) (0)
- Abstract A23: SMYD3 links methylation of MAP3K2 to Ras-driven tumors (2015) (0)
- The Single Cell Transcriptomic and Epigenomic Map of the Innate Immune Response to Vaccination in Lymph Nodes (2022) (0)
- Author Correction: The immunoregulatory landscape of human tuberculosis granulomas (2022) (0)
- Global functional profiling using onto-express: design and implementation (2006) (0)
- A 6-mRNA host response classifier in whole blood predicts outcomes in COVID-19 and other acute viral infections (2022) (0)
- Multisystem inflammatory syndrome in children: a microcosm of challenges and opportunities for translational bioinformatics in pediatric research (2021) (0)
- Lipidomic profiling reveals age-dependent changes in complex plasma membrane lipids that regulate neural stem cell aging (2022) (0)
- Data Heterogeneity: The Enzyme to Catalyze Translational Bioinformatics? (Preprint) (2020) (0)
- 119. Prospective Validation of a 3-Gene Signature for Tuberculosis Diagnosis, Predicting Progression and Evaluating Treatment Response (2018) (0)
- Years of Pathway Analysis : Current Approaches and Outstanding Challenges-Supplementary Notes (2011) (0)
- Proximal and Distal Nephron-specific Adaptation to Furosemide (2021) (0)
- Single cell transcriptomics of human prenatal anterior foregut-derived organs identifies distinct developmental signatures directing commitment and specialization of the thymic epithelial stroma (2023) (0)
- A Common Rejection Module (CRM) across Multiple Transplant Organs Identifies Novel Therapeutics for Treatment of Acute Rejection in Solid Organ Transplantation (2013) (0)
- The impacts of ambient air pollution exposure during pregnancy on maternal and neonatal inflammatory biomarkers (2023) (0)
- A 6-mRNA host response whole-blood classifier trained on pre-pandemic data accurately predicts severity in COVID-19 and other acute viral infections (2020) (0)
- Blood Transcriptional Correlates of BCG-Induced Protection Against Tuberculosis in Rhesus Macaques (2022) (0)
- in human neutrophils Effects of 30 min of aerobic exercise on gene expression (2015) (0)
- Multicohort Analysis of Effect of Ionizing Radiation on Transcription Identifies Conserved Gene Signature and Clinically Relevant Novel Radiosensitizers (2016) (0)
- Specific miRNAʼs and their Downstream Targets Are Associated with Acute Rejection in Pediatric Renal Allografts: 2047 (2012) (0)
- Leveraging heterogeneity across multiple datasets increases cell-mixture deconvolution accuracy and reduces biological and technical biases (2018) (0)
- Data analytics for precision medicine (2019) (0)
- Title: Diagnostic accuracy study of a novel blood-based assay # for identification of TB in people living with HIV (2020) (0)
- 299. Systems immunology profiling of treatment-naïve children with multisystem inflammatory syndrome (2022) (0)
- A novel blood-based assay for treatment monitoring of tuberculosis (2021) (0)
- Mass-Cytometry-Based Quantification of Global Histone Post-Translational Modifications at Single-Cell Resolution Across Peripheral Immune Cells in IBD (2022) (0)
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