Qing Nie | Academic Influence

Qing Nie's AcademicInfluence.com Rankings

Qing Nie

Mathematics

#6597

World Rank

#9111

Historical Rank

Measure Theory

#1843

World Rank

#2252

Historical Rank

mathematics Degrees

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Mathematics

Qing Nie's Degrees

PhD Mathematics University of California, Berkeley
Masters Mathematics University of California, Berkeley
Bachelors Mathematics Peking University

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Why Is Qing Nie Influential?

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According to Wikipedia, Qing Nie is a mathematician and systems biology researcher. He is a Chancellor's Professor of Mathematics, Developmental and Cell Biology, and Biomedical Engineering at University of California, Irvine. He is also the director of the Center for Mathematical and Computational Biology and the NSF-Simons Center for Multiscale Cell Fate Research at the University.

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Qing Nie's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Inference and analysis of cell-cell communication using CellChat (2020) (928)
DifferentialEquations.jl – A Performant and Feature-Rich Ecosystem for Solving Differential Equations in Julia (2017) (772)
Do morphogen gradients arise by diffusion? (2002) (426)
Evolutionary history, potential intermediate animal host, and cross‐species analyses of SARS‐CoV‐2 (2020) (371)
Mouse cardiac surgery: comprehensive techniques for the generation of mouse models of human diseases and their application for genomic studies. (2004) (317)
Nonlinear simulation of tumor growth (2003) (297)
Cell Lineages and the Logic of Proliferative Control (2009) (294)
Single-cell analysis reveals fibroblast heterogeneity and myeloid-derived adipocyte progenitors in murine skin wounds (2019) (260)
Complex Regulation of cyp26a1 Creates a Robust Retinoic Acid Gradient in the Zebrafish Embryo (2007) (237)
Sparsity based denoising of spectral domain optical coherence tomography images (2012) (212)
An Ovol2-Zeb1 Mutual Inhibitory Circuit Governs Bidirectional and Multi-step Transition between Epithelial and Mesenchymal States (2015) (205)
Fast Acquisition and Reconstruction of Optical Coherence Tomography Images via Sparse Representation (2013) (189)
Long-term effects of exogenous silicon on cadmium translocation and toxicity in rice (Oryza sativa L.) (2008) (186)
Formation of the BMP activity gradient in the Drosophila embryo. (2005) (177)
Free Extracellular Diffusion Creates the Dpp Morphogen Gradient of the Drosophila Wing Disc (2012) (136)
Inferring spatial and signaling relationships between cells from single cell transcriptomic data (2020) (123)
Efficient semi-implicit schemes for stiff systems (2006) (123)
Diverse feather shape evolution enabled by coupling anisotropic signalling modules with self-organizing branching programme (2017) (123)
Myocardin Expression Is Regulated by Nkx2.5, and Its Function Is Required for Cardiomyogenesis (2003) (113)
Robust Spatial Sensing of Mating Pheromone Gradients by Yeast Cells (2008) (112)
Feedback regulation in multistage cell lineages. (2008) (109)
Transcriptional mechanisms link epithelial plasticity to adhesion and differentiation of epidermal progenitor cells. (2014) (106)
Defining Epidermal Basal Cell States during Skin Homeostasis and Wound Healing Using Single-Cell Transcriptomics (2019) (98)
Dynamics and precision in retinoic acid morphogen gradients. (2012) (88)
Noise drives sharpening of gene expression boundaries in the zebrafish hindbrain (2012) (87)
Cell lineage and communication network inference via optimization for single-cell transcriptomics (2019) (85)
Multiscale Modeling of Inflammation-Induced Tumorigenesis Reveals Competing Oncogenic and Oncoprotective Roles for Inflammation. (2017) (80)
A theoretical framework for specificity in cell signaling (2005) (80)
Phylogenetic and phylodynamic analyses of SARS-CoV-2 (2020) (79)
The measure of success: constraints, objectives, and tradeoffs in morphogen-mediated patterning. (2009) (77)
scEpath: energy landscape-based inference of transition probabilities and cellular trajectories from single-cell transcriptomic data (2018) (75)
Integrative multicellular biological modeling: a case study of 3D epidermal development using GPU algorithms (2010) (73)
scAI: an unsupervised approach for the integrative analysis of parallel single-cell transcriptomic and epigenomic profiles (2020) (72)
Single cell transcriptomics of human epidermis identifies basal stem cell transition states (2020) (71)
Mathematical models of specificity in cell signaling. (2007) (69)
Nonlinear three-dimensional simulation of solid tumor growth (2007) (65)
Operator splitting implicit integration factor methods for stiff reaction-diffusion-advection systems (2011) (65)
Mathematical model of adult stem cell regeneration with cross-talk between genetic and epigenetic regulation (2014) (63)
Intermediate cell states in epithelial-to-mesenchymal transition (2019) (63)
Cellular retinoic acid-binding proteins are essential for hindbrain patterning and signal robustness in zebrafish (2012) (62)
scMC learns biological variation through the alignment of multiple single-cell genomics datasets (2021) (62)
Exploring intermediate cell states through the lens of single cells (2018) (59)
Biosilicified structures for cooling plant leaves: A mechanism of highly efficient midinfrared thermal emission (2005) (59)
Transcriptome Analysis of Shell Color-Related Genes in the Clam Meretrix meretrix (2015) (56)
Primary visual cortex shows laminar‐specific and balanced circuit organization of excitatory and inhibitory synaptic connectivity (2016) (54)
A retinal vessel boundary tracking method based on Bayesian theory and multi-scale line detection (2014) (53)
Ovol2 Suppresses Cell Cycling and Terminal Differentiation of Keratinocytes by Directly Repressing c-Myc and Notch1* (2009) (52)
The landscape of cell-cell communication through single-cell transcriptomics. (2021) (52)
CA1-Projecting Subiculum Neurons Facilitate Object-Place Learning (2019) (51)
Nonlinear Growth Kinetics of Breast Cancer Stem Cells: Implications for Cancer Stem Cell Targeted Therapy (2013) (51)
A combination of multisite phosphorylation and substrate sequestration produces switchlike responses. (2010) (50)
ADAPTIVE METHODS FOR STOCHASTIC DIFFERENTIAL EQUATIONS VIA NATURAL EMBEDDINGS AND REJECTION SAMPLING WITH MEMORY. (2017) (49)
Three isoforms of anti-lipopolysaccharide factor identified from eyestalk cDNA library of swimming crab Portunus trituberculatus. (2011) (47)
A Critical Quantity for Noise Attenuation in Feedback Systems (2010) (46)
Quantifying the landscape and kinetic paths for epithelial-mesenchymal transition from a core circuit. (2016) (45)
A multi-scale model for hair follicles reveals heterogeneous domains driving rapid spatiotemporal hair growth patterning (2017) (45)
A reaction–diffusion mechanism influences cell lineage progression as a basis for formation, regeneration, and stability of intestinal crypts (2012) (45)
Spatial dynamics of multistage cell lineages in tissue stratification. (2010) (44)
Wingless Directly Represses DPP Morphogen Expression via an Armadillo/TCF/Brinker Complex (2007) (41)
UFold: fast and accurate RNA secondary structure prediction with deep learning (2020) (41)
Membrane-Associated Non-Receptors and Morphogen Gradients (2007) (40)
Incorporating Existing Network Information into Gene Network Inference (2009) (40)
Spatially distributed morphogen production and morphogen gradient formation. (2005) (39)
Network Topologies That Can Achieve Dual Function of Adaptation and Noise Attenuation. (2019) (38)
Computational analysis of BMP gradients in dorsal-ventral patterning of the zebrafish embryo. (2007) (37)
Nonessential sites improve phosphorylation switch. (2010) (37)
Two- and three-dimensional equilibrium morphology of a misfitting particle and the Gibbs-Thomson effect (2004) (37)
Noise modulation in retinoic acid signaling sharpens segmental boundaries of gene expression in the embryonic zebrafish hindbrain (2016) (36)
Inference and multiscale model of epithelial-to-mesenchymal transition via single-cell transcriptomic data (2020) (36)
A mathematical model of mechanotransduction reveals how mechanical memory regulates mesenchymal stem cell fate decisions (2017) (35)
Protein Scaffolds Can Enhance the Bistability of Multisite Phosphorylation Systems (2012) (34)
Numerical methods for stiff reaction-diffusion systems (2007) (34)
Effects of Sog on Dpp-Receptor Binding (2005) (34)
Dissecting transition cells from single-cell transcriptome data through multiscale stochastic dynamics (2021) (33)
Modeling Robustness Tradeoffs in Yeast Cell Polarization Induced by Spatial Gradients (2008) (33)
A comparative runtime analysis of heuristic algorithms for satisfiability problems (2009) (33)
Compact integration factor methods for complex domains and adaptive mesh refinement (2010) (32)
Array-representation integration factor method for high-dimensional systems (2014) (31)
Shaping organs by a wingless-int/Notch/nonmuscle myosin module which orients feather bud elongation (2013) (31)
MicroRNA filters Hox temporal transcription noise to confer boundary formation in the spinal cord (2017) (30)
Circadian control of interferon-sensitive gene expression in murine skin (2020) (29)
Internalization and end flux in morphogen gradient formation (2006) (29)
Genomic epidemiology of a densely sampled COVID-19 outbreak in China (2020) (29)
Nanog induced intermediate state in regulating stem cell differentiation and reprogramming (2018) (28)
Computational modelling of epidermal stratification highlights the importance of asymmetric cell division for predictable and robust layer formation (2014) (27)
Stem cell niche structure as an inherent cause of undulating epithelial morphologies. (2013) (27)
Visualizing retinoic acid morphogen gradients. (2016) (26)
The nonlinear evolution of vortex sheets with surface tension in axisymmetric flows (2001) (26)
Noise filtering tradeoffs in spatial gradient sensing and cell polarization response (2011) (25)
Keratinocyte-Macrophage Crosstalk by the Nrf2/Ccl2/EGF Signaling Axis Orchestrates Tissue Repair. (2020) (25)
Characterization of a transferable bcrABC and cadAC genes-harboring plasmid in Listeria monocytogenes strain isolated from food products of animal origin. (2016) (24)
The Interplay between Wnt Mediated Expansion and Negative Regulation of Growth Promotes Robust Intestinal Crypt Structure and Homeostasis (2015) (24)
An Ovol2‐Zeb1 transcriptional circuit regulates epithelial directional migration and proliferation (2018) (24)
Size-normalized Robustness of Dpp Gradient in Drosophila Wing Imaginal Disc. (2011) (24)
A moment-convergence method for stochastic analysis of biochemical reaction networks. (2016) (24)
Seroprevalence of antibodies to pertussis and diphtheria among healthy adults in China. (2011) (23)
Semiautomatic Segmentation of Rim Area Focal Hyperautofluorescence Predicts Progression of Geographic Atrophy Due to Dry Age-Related Macular Degeneration (2016) (23)
Gene Expression Noise Enhances Robust Organization of the Early Mammalian Blastocyst (2017) (23)
Kidney-targeted baicalin-lysozyme conjugate ameliorates renal fibrosis in rats with diabetic nephropathy induced by streptozotocin (2020) (23)
Murine interfollicular epidermal differentiation is gradualistic with GRHL3 controlling progression from stem to transition cell states (2020) (23)
Induction and application of ferroptosis in cancer therapy (2022) (22)
Cell Sorting and Noise-Induced Cell Plasticity Coordinate to Sharpen Boundaries between Gene Expression Domains (2017) (22)
Cycling Stem Cells Are Radioresistant and Regenerate the Intestine. (2020) (21)
Ultrasensitive Responses and Specificity in Cell Signaling (2010) (21)
Fus3-triggered Tec1 degradation modulates mating transcriptional output during the pheromone response (2008) (21)
Low-Rank Regularization for Learning Gene Expression Programs (2013) (20)
A hybrid continuous-discrete method for stochastic reaction–diffusion processes (2016) (20)
ROBUSTNESS OF SIGNALING GRADIENT IN DROSOPHILA WING IMAGINAL DISC. (2011) (20)
Aggregation of a Distributed Source in Morphogen Gradient Formation (2005) (20)
Multiscale modeling of layer formation in epidermis (2018) (20)
Scaling a Dpp Morphogen Gradient through Feedback Control of Receptors and Co-receptors. (2020) (20)
Deciphering principles of morphogenesis from temporal and spatial patterns on the integument (2015) (19)
Semi-implicit integration factor methods on sparse grids for high-dimensional systems (2015) (19)
Robust and precise morphogen-mediated patterning: trade-offs, constraints and mechanisms (2015) (19)
Semi-permeable Diffusion Barriers Enhance Patterning Robustness in the C. elegans Germline. (2015) (18)
Predicting transcription factor binding in single cells through deep learning. (2020) (18)
Microstructure evolution in three-dimensional inhomogeneous elastic media (2003) (18)
Mean-Independent Noise Control of Cell Fates via Intermediate States (2018) (18)
Development of Vibrio spp. infection resistance related SNP markers using multiplex SNaPshot genotyping method in the clam Meretrix meretrix. (2015) (18)
Modeling Yeast Cell Polarization Induced by Pheromone Gradients (2007) (17)
High resolution molecular and histological analysis of renal disease progression in ZSF1 fa/faCP rats, a model of type 2 diabetic nephropathy (2017) (17)
Revealing Dynamic Mechanisms of Cell Fate Decisions From Single-Cell Transcriptomic Data (2019) (17)
Controlling Stochasticity in Epithelial-Mesenchymal Transition Through Multiple Intermediate Cellular States. (2016) (16)
Can morphogen activity be enhanced by its inhibitors (2003) (16)
Stability-Optimized High Order Methods and Stiffness Detection for Pathwise Stiff Stochastic Differential Equations (2018) (16)
DNA Methylation and Regulatory Elements during Chicken Germline Stem Cell Differentiation (2018) (15)
Deciphering tissue structure and function using spatial transcriptomics (2022) (15)
Confederated Modular Differential Equation APIs for Accelerated Algorithm Development and Benchmarking (2018) (15)
Three vibrio-resistance related EST-SSR markers revealed by selective genotyping in the clam Meretrix meretrix. (2013) (15)
Antimicrobial Resistance and Resistance Genes in Aerobic Bacteria Isolated from Pork at Slaughter. (2016) (15)
Histone Deacetylases Inhibit the Snail2-Mediated EMT During Metastasis of Hepatocellular Carcinoma Cells (2020) (15)
A robust and efficient method for steady state patterns in reaction-diffusion systems (2012) (15)
An integration factor method for stochastic and stiff reaction-diffusion systems (2015) (14)
ROBUSTNESS OF MORPHOGEN GRADIENTS WITH "BUCKET BRIGADE" TRANSPORT THROUGH MEMBRANE-ASSOCIATED NON-RECEPTORS. (2012) (14)
A multiscale hybrid mathematical model of epidermal‐dermal interactions during skin wound healing (2019) (14)
Inference of Intercellular Communications and Multilayer Gene-Regulations of Epithelial–Mesenchymal Transition From Single-Cell Transcriptomic Data (2021) (14)
Multiple Paths to Morphogen Gradient Robustness (2005) (14)
Localized Ectopic Expression of Dpp Receptors in a Drosophila Embryo (2009) (14)
An Adaptive Hybrid Algorithm for Global Network Alignment (2016) (13)
Modelling of Yeast Mating Reveals Robustness Strategies for Cell-Cell Interactions (2016) (13)
Role of glutamine and its metabolite ammonia in crosstalk of cancer-associated fibroblasts and cancer cells (2021) (13)
Signaling regulated endocytosis and exocytosis lead to mating pheromone concentration dependent morphologies in yeast (2012) (13)
Single-cell transcriptomic analysis of zebrafish cranial neural crest reveals spatiotemporal regulation of lineage decisions during development (2021) (13)
DEEPsc: A Deep Learning-Based Map Connecting Single-Cell Transcriptomics and Spatial Imaging Data (2021) (13)
External noise control in inherently stochastic biological systems. (2012) (13)
Inference of the Xenopus tropicalis embryonic regulatory network and spatial gene expression patterns (2014) (12)
A retinal vessel tracking method based on Bayesian theory (2013) (12)
The Msi1-mTOR pathway drives the pathogenesis of mammary and extramammary Paget’s disease (2020) (12)
Wound healing in aged skin exhibits systems-level alterations in cellular composition and cell-cell communication (2022) (12)
Modeling spatial population dynamics of stem cell lineage in tissue growth (2012) (12)
Landscape reveals critical network structures for sharpening gene expression boundaries (2018) (12)
On an elastically induced splitting instability (2001) (12)
Epithelial Migration and Non-adhesive Periderm Are Required for Digit Separation during Mammalian Development. (2020) (12)
Landscape and kinetic path quantify critical transitions in epithelial-mesenchymal transition (2021) (11)
A self-enhanced transport mechanism through long noncoding RNAs for X chromosome inactivation (2016) (11)
Modeling craniofacial development reveals spatiotemporal constraints on robust patterning of the mandibular arch (2018) (10)
Noise control and utility: From regulatory network to spatial patterning (2020) (10)
An effective method for computing the noise in biochemical networks. (2013) (10)
scRCMF: Identification of Cell Subpopulations and Transition States From Single-Cell Transcriptomes (2020) (10)
A multiscale model via single-cell transcriptomics reveals robust patterning mechanisms during early mammalian embryo development (2021) (9)
CORRIGENDUM: Nonlinear Growth Kinetics of Breast Cancer Stem Cells: Implications for Cancer Stem Cell Targeted Therapy (2013) (9)
Lepr+ mesenchymal cells sense diet to modulate intestinal stem/progenitor cells via Leptin–Igf1 axis (2022) (9)
Mathematical modeling of histone modifications reveals the formation mechanism and function of bivalent chromatin (2021) (9)
Single cell transcriptomics of human epidermis reveals basal stem cell transition states (2019) (8)
SAILER: scalable and accurate invariant representation learning for single-cell ATAC-seq processing and integration (2021) (8)
Screening cell–cell communication in spatial transcriptomics via collective optimal transport (2022) (8)
Inferring latent temporal progression and regulatory networks from cross-sectional transcriptomic data of cancer samples (2020) (8)
A delay model for noise-induced bi-directional switching (2009) (8)
Stem cells: a window of opportunity in low-dimensional EMT space (2018) (8)
Human Umbilical Cord Mesenchymal Stem Cells Therapy for Insulin Resistance: A Novel Strategy in Clinical Implication. (2018) (8)
Predicting transcription factor binding in single cells through deep learning (2020) (7)
A single-cell epigenetic model for paternal psychological stress-induced transgenerational reprogramming in offspring† (2018) (7)
Ovol 2 Suppresses Cell Cycling and Terminal Differentiation of Keratinocytes by Directly Repressing c-Myc and Notch 1 * (2009) (7)
Single-Cell RNA-Seq Analysis Reveals the Acquisition of Cancer Stem Cell Traits and Increase of Cell–Cell Signaling during EMT Progression (2021) (7)
spliceJAC: transition genes and state‐specific gene regulation from single‐cell transcriptome data (2022) (7)
SOMSC: Self-Organization-Map for High-Dimensional Single-Cell Data of Cellular States and Their Transitions (2017) (6)
Interactions and tradeoffs between cell recruitment, proliferation, and differentiation affect CNS regeneration. (2014) (6)
Topographer Reveals Dynamic Mechanisms of Cell Fate Decisions from Single-Cell Transcriptomic Data (2018) (6)
Nursing Management of Severe COVID-19 Patients Undergoing Extracorporeal Membrane Oxygenation Combined with Prone Position Ventilation. (2020) (6)
Single-cell analysis of human basal cell carcinoma reveals novel regulators of tumor growth and the tumor microenvironment (2022) (6)
Single-cell analysis reveals fibroblast heterogeneity and myeloid-derived adipocyte progenitors in murine skin wounds (2019) (6)
A high-order boundary integral method for surface diffusions on elastically stressed axisymmetric rods (2009) (6)
Hedgehog signaling reprograms hair follicle niche fibroblasts to a hyper-activated state. (2022) (6)
DNF: A differential network flow method to identify rewiring drivers for gene regulatory networks (2020) (6)
SoptSC: Similarity matrix optimization for clustering, lineage, and signaling inference (2018) (5)
STOCHASTIC DYNAMICS OF CELL LINEAGE IN TISSUE HOMEOSTASIS. (2019) (5)
Numerical Methods for Two-Dimensional Stem Cell Tissue Growth (2013) (5)
Mathematical analysis of steady-state solutions in compartment and continuum models of cell polarization. (2011) (5)
Identifying multicellular spatiotemporal organization of cells with SpaceFlow (2022) (5)
How can Waddington-like landscapes facilitate insights beyond developmental biology? (2022) (5)
Multimodal analyses of vitiligo skin idenitfy tissue characteristics of stable disease (2022) (5)
Machine learning of swimming data via wisdom of crowd and regression analysis. (2016) (5)
Robust Population Single Neuronal Calcium Signal Extraction Using SCOUT Allows for Longitudinal Analysis of Behavior-associated Neural Ensemble Dynamics (2020) (4)
Regulatory Feedbacks on Receptor and Non-receptor Synthesis for Robust Signaling (2019) (4)
Kernel Differential Subgraph Analysis to Reveal the Key Period Affecting Glioblastoma (2020) (4)
Low-rank Similarity Matrix Optimization Identifies Subpopulation Structure and Orders Single Cells in Pseudotime (2017) (4)
Divergent Resistance Mechanisms to Immunotherapy Explain Responses in Different Skin Cancers (2020) (4)
Multiple morphogens and rapid elongation promote segmental patterning during development (2021) (4)
Mathematical models of morphogen dynamics and growth control (2016) (4)
DIRECT-NET: An efficient method to discover cis-regulatory elements and construct regulatory networks from single-cell multiomics data (2022) (4)
Magnitude and breadth of antibody cross-reactivity induced by recombinant influenza hemagglutinin trimer vaccine is enhanced by combination adjuvants (2021) (4)
Inferring spatial and signaling relationships between cells from single cell transcriptomic data (2020) (4)
Semi-adaptive response and noise attenuation in bone morphogenetic protein signalling (2015) (3)
Graphics processing unit-based alignment of protein interaction networks. (2015) (3)
Improved urine DNA methylation panel for early bladder cancer detection (2021) (3)
Kernel differential subgraph reveals dynamic changes in biomolecular networks (2017) (3)
Surface Diffusion on Stressed Solid Surface (2007) (3)
A Study of Gene Expression, Structure, and Contractility of iPSC-Derived Cardiac Myocytes from a Family with Heart Disease due to LMNA Mutation (2021) (3)
Diverse Paths to Morphogen Gradient Robustness (2005) (3)
Identifying age-specific gene signatures of the human cerebral cortex with joint analysis of transcriptomes and functional connectomes. (2020) (3)
Plasmodium yoelii 17XL infection modified maturation and function of dendritic cells by skewing Tregs and amplificating Th17 (2020) (3)
A HYBRID METHOD FOR STIFF REACTION-DIFFUSION EQUATIONS. (2019) (3)
A Modified L-Iterative Algorithm for Fast Computation of Pseudo-Zernike Moments (2009) (2)
Differential cell composition and split epidermal differentiation in human palm, sole, and hip skin (2023) (2)
Correction: Low-Rank Regularization for Learning Gene Expression Programs (2014) (2)
A single center retrospective study of paraneoplastic neurological syndromes with positive onconeural antibodies (2021) (2)
Inferring neuron-neuron communications from single-cell transcriptomics through NeuronChat (2023) (2)
Prediction of Essential Genes in Comparison States Using Machine Learning (2020) (2)
Alternative cell polarity behaviours arise from changes in G-protein spatial dynamics. (2015) (2)
Object Recognition Based on Efficient Sub-window Search (2009) (2)
Single-cell transcriptomic analysis unveils spinal motor neuron subtype diversity underpinning the water-to-land transition in vertebrates (2021) (2)
Modeling the effects of EMT-immune dynamics on carcinoma disease progression (2021) (1)
1 Supporting Information Spatial Dynamics of Multi-stage Cell Lineages in Tissue Stratification (2010) (1)
Pre-neoplastic stromal cells drive BRCA1-mediated breast tumorigenesis (2021) (1)
[Blighted ovum in subfertile patients undergoing assisted reproductive technology]. (2017) (1)
[Suggestions to strengthen quality management of herbal decoction pieces--based on production chain of herbal decoction pieces]. (2015) (1)
Preneoplastic stromal cells promote BRCA1-mediated breast tumorigenesis (2023) (1)
Examining age-dependent DNA methylation patterns and gene expression in the male and female mouse hippocampus (2021) (1)
Single-cell analysis of basal cell carcinoma reveals heat shock proteins promote tumor growth in response to WNT5A-mediated inflammatory signals (2021) (1)
974 Single-cell analysis identifies heterogeneity of fibroblasts and myeloid-derived adipocytes in regenerating mouse skin wounds (2019) (1)
Effect of fermentation by Pediococcus pentosaceus and Staphylococcus carnosus on the metabolite profile of sausages. (2022) (1)
Efficient and Robust Methods for Steady-State Patterns in Reaction-Diffusion Systems (2011) (1)
KVM Combined with Hadoop Application based-on CPSE-Bio (2013) (1)
Equal opportunities in stemness (2019) (1)
PLOS Computational Biology 2017 Reviewer and Editorial Board Thank You (2018) (1)
scAI: an unsupervised approach for the integrative analysis of parallel single-cell transcriptomic and epigenomic profiles (2020) (1)
Single-cell transcriptomic analysis reveals diversity within mammalian spinal motor neurons (2023) (1)
The role of feedback in the formation of morphogen territories. (2008) (1)
Inferring neuron-neuron communications from single-cell transcriptomics through NeuronChat (2023) (1)
Identification of the MmeHairy gene and expression analysis affected by two SNPs in the 3'-untranslated region in the clam Meretrix meretrix. (2016) (1)
Modeling spatial intercellular communication and multilayer signaling regulations using stMLnet (2022) (1)
Feedback control of morphogen gradient scale (2019) (1)
Supervised Optimal Transport (2022) (1)
Active Shape Model for Contour Detection of Anatomical Structure (2015) (0)
Brief Report: Genomic epidemiology 1 of a densely sampled COVID19 2 outbreak in China 3 (2020) (0)
The integration research of pre-multicast method and adaptive routing protocol with random network coding based on the OMNeT++ platform (2018) (0)
Concurrent Session 2: Regulatory Networks (2010) (0)
exFINDER: identify external communication signals using single-cell transcriptomics data (2023) (0)
AVIDA: Alternating method for Visualizing and Integrating Data (2022) (0)
Leveraging gene correlations in single cell transcriptomic data (2023) (0)
Interdisciplinary Case Study: How Mathematicians and Biologists Found Order in Cellular Noise (2018) (0)
DURIAN: an integrative deconvolution and imputation method for robust signaling analysis of single-cell transcriptomics data (2022) (0)
Integrated analysis of multimodal single-cell data with structural similarity (2022) (0)
Modeling the competing effects of the immune system and EMT on tumor development (2019) (0)
exFINDER: identify external communication signals using single-cell transcriptomics data (2023) (0)
hindbrain patterning and signal robustness in zebrafish (2012) (0)
[Reduction of ADRs of essential traditional Chinese medicines]. (2016) (0)
Analyses the Existing Problems and Development Countermeasures of Jiangxi University of Traditional Chinese Medicine (2011) (0)
The Development and Application of Chinese Wolfberry in Garden (2020) (0)
3D Printed Drug Delivery: An Appealing Trend for Chinese Medicines (2021) (0)
Graph based optic nerve head segmentation (2014) (0)
Ophthalmic Imaging Semiautomatic Segmentation of Rim Area Focal Hyperautofluorescence Predicts Progression of Geographic Atrophy Due to Dry Age-Related Macular Degeneration (2016) (0)
Robust, easy-to-use, semiautomated software quantifies lesion rim area hyperautofluorescence and predicts progression of geographic atrophy. (2015) (0)
Computational study of signaling specificity and epigenetic regulation (2011) (0)
Multidisciplinary Ophthalmic Imaging Semiautomatic Segmentation of Rim Area Focal Hyperautofluorescence Predicts Progression of Geographic Atrophy Due to Dry Age-Related Macular Degeneration (2016) (0)
Machine Learning of Single Cell Transcriptomic Data From anti-PD-1 Responders and Non-responders Reveals Distinct Resistance Mechanisms in Skin Cancers and PDAC (2022) (0)
Detection and Quantification of Autofluorescence Abnormalities in Patients with Neovascular Macular Degeneration using a Fully Automated Image Analysis Algorithm (2013) (0)
Computer-assisted evaluation of longitudinal changes in optic nerve head morphology in children (2013) (0)
Virtual technology on CPSE-Bio (2012) (0)
Prediction on Performance of Age Group Swimming Using Machine Learning (2015) (0)
Tracking longitudinal population dynamics of single neuronal calcium signal using SCOUT (2021) (0)
Stem Cells and Regeneration: Feedback, Niche, and Epigenetic Regulation (2014) (0)
Editors & Editorial Board (2012) (0)
Works Title The Interplay between Wnt Mediated Expansion and Negative Regulation of Growth Promotes Robust Intestinal Crypt Structure and Homeostasis Permalink (2015) (0)
Analyzing network diversity of cell–cell interactions in COVID-19 using single-cell transcriptomics (2022) (0)
CA1-projecting subiculum neurons facilitate object–place learning (2019) (0)
Multimodal Analyses of Stable Vitiligo Skin Identify Tissue Interactions That Control Disease Persistence (2021) (0)
Sfrp2 is a multifunctional regulator of rodent coat patterns (2023) (0)
The Msi1-mTOR pathway drives the pathogenesis of mammary and extramammary Paget’s disease (2020) (0)
Single cell transcriptomics of human skin equivalent organoids (2022) (0)
Single-cell and spatial transcriptomics identify a macrophage population associated with skeletal muscle fibrosis (2023) (0)
The Heterogeneity Landscape of Mesenchymal Stem/Stromal Cell-Derived Extracellular Vesicles (2022) (0)
Modeling the effects of EMT-immune dynamics on epithelial cancer progression (2019) (0)
Regulation of intestinal crypt homoeostasis : A balance between Wnt mediated expansion and proliferation inhibition (2015) (0)
Morphogen-mediated Patterning The Measure of Success : Constraints , Objectives , and Tradeoffs in (2009) (0)
robust layer formation the importance of asymmetric cell division for predictable and Computational modelling of epidermal stratification highlights (2014) (0)
Multi-scale Modelling for Threshold Dependent Differentiation. (2009) (0)
A follistatin-BMP7 feedback circuit controls taste papillae development and patterning in mouse tongue (2009) (0)
LB999 Role of transcription factor Ovol2 in skin epithelial regeneration and repair (2017) (0)
Systems Biology of Cell Signaling (2022) (0)
Theoretical and computational tools to model multistable gene regulatory networks (2023) (0)
Rapidly cycling stem cells regenerate the intestine independent of Lgr5high cells (2019) (0)
Computational studies of morphogen gradients (2006) (0)
Transcriptomics reveals complex kinetics of dorsal–ventral patterning gene expression in the mandibular arch (2018) (0)
PNAS Plus Significance Statements (2014) (0)
Modeling of histone modifications reveals formation mechanism and function of bivalent chromatin (2021) (0)
Supplementary material : A single-cell epigenetic model for parental psychological stress-induced transgenerational reprogramming in offspring (2018) (0)
Cell Biology Modeling Development (2011) (0)
Lepr+ Mesenchymal Cells Sense Diet to Modulate Intestinal Stem Cells Via Leptin-Igf1 Axis (2021) (0)
Multiscale Modeling of the Competing Roles of the Immune System in EMT-Mediated Cancer (2019) (0)
The diverse landscape of modeling in single-cell biology (2021) (0)
A global biomolecular network alignment method based on network flow model (2017) (0)
Numerical Methods for Two-Dimensional Stem Cell Tissue Growth (2013) (0)
Spatial-temporal order-disorder transition in angiogenic NOTCH signaling controls cell fate specification (2022) (0)
Elucidation of the endoderm gene regulatory network by integrating computational methods and perturbation analyses in Xenopus (2010) (0)
1337 Single cell transcriptome profiling of human interfollicular epidermis reveals robust heterogeneity and divergent differentiation lineages (2018) (0)
1458 EMT-inhibiting transcription factor Ovol2 regulates directional cell migration and proliferation in adult skin epithelia (2018) (0)
Title A self-enhanced transport mechanism through long noncoding RNAs for X chromosome inactivation (2016) (0)
Morphogen Cellular retinoic acid-binding proteins are essential for hindbrain patterning and signal robustness in (2012) (0)
In-vivo optical microscopy and single cell transcriptomics approaches provide insights into therapeutic response of vitiligo (2021) (0)
Classification Based on SPACT and Visual Saliency (2009) (0)
MULTISTAGE CELL LINEAGES (2008) (0)
Transcriptome Analysis of Shell Color-Related Genes in the Clam Meretrix meretrix (2015) (0)
Text detection based on wavelet transform (2008) (0)
Contour Based Multi-object Classification Technology (2008) (0)
Image Classification Technology Based on Mining of Frequent Item Sets (2008) (0)
SPATIALLY-LOCALIZED SCAFFOLD PROTEINS MAY FACILITATE TO TRANSMIT LONG-RANGE SIGNALS ! Dedicated to Professor James Glimm on the occasion of his 75th birthday (2009) (0)
Induction and application of ferroptosis in cancer therapy (2022) (0)
[Effect of luteinizing hormone variation on clinical outcomes in patients with polycystic ovarian syndrome undergoing in vitro fertilization-embryo transfer using standard long protocol]. (2016) (0)
miR-16 Regulates Chicken Growth via Targeting FOXO1A and ACVR2A (2014) (0)
Noise control and utility: From regulatory network to spatial patterning (2020) (0)
[S100A4, a potential therapeutic target on bladder cancer stem cells]. (2017) (0)
Global Identification of Growth-Related Non-Coding RNAs in Chicken Breast Muscle (2015) (0)
RIPK1 is a potential therapeutic target of bladder cancer stem cells (2017) (0)
Functional Characterization of miR-16 in Regulating Chicken Growth via Targeting FOXO1A and ACVR2A (2014) (0)
154 Dissecting the keratinocyte lineage of basal cell carcinoma using single cell RNA sequencing (2019) (0)
A dictionary based survival error compensation for robust adaptive filtering (2016) (0)

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