Rafael Irizarry
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American professor of biostatistics
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Rafael Irizarry mathematics Degrees
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Mathematics
Rafael Irizarry 's Degrees
- Bachelors Mathematics University of Puerto Rico
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Why Is Rafael Irizarry Influential?
(Suggest an Edit or Addition)According to Wikipedia, Rafael Irizarry is a professor of biostatistics at the Harvard T.H. Chan School of Public Health and professor of biostatistics and computational biology at the Dana–Farber Cancer Institute. Irizarry is known as one of the founders of the Bioconductor project.
Rafael Irizarry 's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Bioconductor: open software development for computational biology and bioinformatics (2004) (12224)
- Exploration, normalization, and summaries of high density oligonucleotide array probe level data. (2003) (10847)
- ggplot2 (2019) (10253)
- A comparison of normalization methods for high density oligonucleotide array data based on variance and bias (2003) (8295)
- Summaries of Affymetrix GeneChip probe level data. (2003) (5248)
- affy - analysis of Affymetrix GeneChip data at the probe level (2004) (4861)
- Salmon provides fast and bias-aware quantification of transcript expression (2017) (4116)
- Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays (2014) (2686)
- Orchestrating high-throughput genomic analysis with Bioconductor (2015) (2623)
- Bioinformatics and Computational Biology Solutions Using R and Bioconductor (Statistics for Biology and Health) (2005) (2247)
- Epigenetic memory in induced pluripotent stem cells (2010) (2191)
- Salmon: fast and bias-aware quantification of transcript expression using dual-phase inference (2017) (2091)
- The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores (2009) (2028)
- A Model-Based Background Adjustment for Oligonucleotide Expression Arrays (2004) (1944)
- Tackling the widespread and critical impact of batch effects in high-throughput data (2010) (1635)
- A framework for oligonucleotide microarray preprocessing (2010) (1255)
- MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens (2014) (1246)
- Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts (2009) (1174)
- Multiple-laboratory comparison of microarray platforms (2005) (898)
- Accounting for cellular heterogeneity is critical in epigenome-wide association studies (2014) (849)
- Intra-individual change over time in DNA methylation with familial clustering. (2008) (689)
- A comprehensive methylome map of lineage commitment from hematopoietic progenitors (2010) (626)
- BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions (2012) (588)
- Meta-analysis of gut microbiome studies identifies disease-specific and shared responses (2017) (573)
- Frozen robust multiarray analysis (fRMA). (2010) (557)
- Removing technical variability in RNA-seq data using conditional quantile normalization (2012) (545)
- Large histone H3 lysine 9 dimethylated chromatin blocks distinguish differentiated from embryonic stem cells (2009) (539)
- Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies. (2012) (538)
- On the utility of pooling biological samples in microarray experiments. (2005) (496)
- Stochastic epigenetic variation as a driving force of development, evolutionary adaptation, and disease (2010) (484)
- Travelling waves in the occurrence of dengue haemorrhagic fever in Thailand (2004) (457)
- The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models (2010) (456)
- Nucleocytosolic acetyl-coenzyme a synthetase is required for histone acetylation and global transcription. (2006) (400)
- Mortality in Puerto Rico after Hurricane Maria (2018) (399)
- Preprocessing of oligonucleotide array data (2004) (392)
- Comparison of Affymetrix GeneChip expression measures (2006) (355)
- Personalized Epigenomic Signatures That Are Stable Over Time and Covary with Body Mass Index (2010) (337)
- Recommendations for the design and analysis of epigenome-wide association studies (2013) (336)
- Missing data and technical variability in single‐cell RNA‐sequencing experiments (2018) (336)
- A benchmark for Affymetrix GeneChip expression measures (2004) (329)
- Excess deaths associated with covid-19 pandemic in 2020: age and sex disaggregated time series analysis in 29 high income countries (2021) (313)
- Stochastic models inspired by hybridization theory for short oligonucleotide arrays (2004) (301)
- Electrocorticographic gamma activity during word production in spoken and sign language (2001) (282)
- The External RNA Controls Consortium: a progress report (2005) (278)
- DNA hypomethylation arises later in prostate cancer progression than CpG island hypermethylation and contributes to metastatic tumor heterogeneity. (2008) (258)
- Comprehensive high-throughput arrays for relative methylation (CHARM). (2008) (251)
- Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data. (2006) (250)
- Intensity normalization improves color calling in SOLiD sequencing (2010) (245)
- DNA Methylation Alterations Exhibit Intraindividual Stability and Interindividual Heterogeneity in Prostate Cancer Metastases (2013) (236)
- Robust decomposition of cell type mixtures in spatial transcriptomics (2020) (229)
- Challenges and emerging directions in single-cell analysis (2017) (223)
- A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB (2006) (212)
- Sequencing technology does not eliminate biological variability (2011) (197)
- On time series analysis of public health and biomedical data. (2006) (191)
- Genome-wide methylation analysis of human colon cancer reveals similar hypo- and hypermethylation at conserved tissue-specific CpG island shores (2008) (185)
- Gene set enrichment analysis made simple (2009) (185)
- The Analysis of Gene Expression Data (2003) (180)
- Gene expression analysis of ischemic and nonischemic cardiomyopathy: shared and distinct genes in the development of heart failure. (2005) (179)
- The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes (2010) (177)
- SMARCB1 is required for widespread BAF complex-mediated activation of enhancers and bivalent promoters (2017) (176)
- Estimation and assessment of raw copy numbers at the single locus level (2008) (173)
- Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model (2019) (169)
- Large hypomethylated blocks as a universal defining epigenetic alteration in human solid tumors (2014) (164)
- Redefining CpG islands using hidden Markov models. (2010) (160)
- Global synthetic-lethality analysis and yeast functional profiling. (2006) (159)
- A benchmark for RNA-seq quantification pipelines (2016) (147)
- S-phase checkpoint genes safeguard high-fidelity sister chromatid cohesion. (2004) (142)
- IVT-seq reveals extreme bias in RNA sequencing (2014) (140)
- Experimental design and low-level analysis of microarray data. (2004) (138)
- The Analysis of Gene Expression Data: Methods and Software (2013) (136)
- Genome-Wide DNA Methylation Scan in Major Depressive Disorder (2012) (134)
- Modeling of RNA-seq fragment sequence bias reduces systematic errors in transcript abundance estimation (2015) (133)
- A gene expression bar code for microarray data (2007) (132)
- Progressive immune dysfunction with advancing disease stage in renal cell carcinoma. (2021) (129)
- Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model (2019) (129)
- Orthologous gene-expression profiling in multi-species models: search for candidate genes (2004) (126)
- Chicken welfare is influenced more by housing conditions than by stocking density (2004) (125)
- Quality Assessment of Affymetrix GeneChip Data (2005) (125)
- Using the R Package crlmm for Genotyping and Copy Number Estimation. (2011) (125)
- Outcomes of Adults with Cystic Fibrosis Infected with Antibiotic-Resistant Pseudomonas aeruginosa (2006) (120)
- Influence of Host Gene Transcription Level and Orientation on HIV-1 Latency in a Primary-Cell Model (2011) (119)
- Identification of a Gene Expression Profile That Differentiates Between Ischemic and Nonischemic Cardiomyopathy (2004) (115)
- Promoter hypermethylation in MLL-r infant acute lymphoblastic leukemia: biology and therapeutic targeting. (2010) (114)
- NID2 and HOXA9 Promoter Hypermethylation as Biomarkers for Prevention and Early Detection in Oral Cavity Squamous Cell Carcinoma Tissues and Saliva (2011) (114)
- Detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes (2020) (109)
- An R Package for Analyses of Affymetrix Oligonucleotide Arrays (2003) (105)
- Functional dissection of lysine deacetylases reveals that HDAC1 and p300 regulate AMPK (2011) (104)
- Age and sun exposure-related widespread genomic blocks of hypomethylation in nonmalignant skin (2015) (100)
- Measuring cell-type specific differential methylation in human brain tissue (2013) (96)
- Overcoming bias and systematic errors in next generation sequencing data (2010) (95)
- Significance analysis and statistical dissection of variably methylated regions. (2012) (94)
- On the widespread and critical impact of systematic bias and batch effects in single-cell RNA-Seq data (2015) (93)
- Processing of Agilent microRNA array data (2010) (91)
- The Analysis of Gene Expression Data: An Overview of Methods and Software (2003) (89)
- Use of Mixture Models in a Microarray-Based Screening Procedure for Detecting Differentially Represented Yeast Mutants (2003) (89)
- Detection and accurate False Discovery Rate control of differentially methylated regions from Whole Genome Bisulfite Sequencing (2017) (86)
- A summarization approach for Affymetrix GeneChip data using a reference training set from a large, biologically diverse database (2006) (83)
- High‐throughput identification of RNA nuclear enrichment sequences (2017) (79)
- SNP-specific array-based allele-specific expression analysis. (2008) (76)
- Accurate genome-scale percentage DNA methylation estimates from microarray data. (2011) (75)
- Large-Scale Topological Changes Restrain Malignant Progression in Colorectal Cancer (2020) (74)
- Salmon provides accurate, fast, and bias-aware transcript expression estimates using dual-phase inference (2016) (73)
- Model‐Based Quality Assessment and Base‐Calling for Second‐Generation Sequencing Data (2010) (73)
- Serum protein MALDI profiling to distinguish upper aerodigestive tract cancer patients from control subjects. (2003) (72)
- Empirical Bayes Analysis of a Microarray Experiment (2008) (72)
- Assessing affymetrix GeneChip microarray quality (2011) (71)
- quantro: a data-driven approach to guide the choice of an appropriate normalization method (2015) (69)
- DNA methylation shows genome-wide association of NFIX, RAPGEF2 and MSRB3 with gestational age at birth. (2012) (68)
- The Gene Expression Barcode 3.0: improved data processing and mining tools (2013) (68)
- Large organized chromatin K9-modifications (LOCKs) distinguish differentiated from embryonic stem cells (2008) (67)
- A Guide to Teaching Data Science (2016) (66)
- Chromosome-wide mapping of DNA methylation patterns in normal and malignant prostate cells reveals pervasive methylation of gene-associated and conserved intergenic sequences (2011) (65)
- Improved microarray methods for profiling the yeast knockout strain collection (2005) (64)
- Quantifying uncertainty in genotype calls (2010) (63)
- Smooth Quantile Normalization (2016) (62)
- The psychophysiology of the maternal-fetal relationship. (2004) (61)
- Every Body Counts: Measuring Mortality From the COVID-19 Pandemic (2020) (61)
- Preprocessing High-density Oligonucleotide Arrays (2005) (59)
- A species-generalized probabilistic model-based definition of CpG islands (2009) (58)
- Cross-correlation of fetal cardiac and somatic activity as an indicator of antenatal neural development. (2001) (57)
- R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips (2009) (53)
- Flexible expressed region analysis for RNA-seq with derfinder (2016) (53)
- Circadian rhythm variation in activity, body temperature, and heart rate between C3H/HeJ and C57BL/6J inbred strains. (2002) (52)
- Correcting for cell-type heterogeneity in epigenome-wide association studies: revisiting previous analyses (2017) (52)
- Transposon insertion site profiling chip (TIP-chip) (2006) (50)
- Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips (2011) (50)
- Gene expression in giant cell myocarditis: Altered expression of immune response genes. (2005) (50)
- Air pollution sources and childhood asthma attacks in Catano, Puerto Rico. (2007) (48)
- Differential expression analysis of RNA-seq data at single-base resolution (2014) (47)
- A multilevel model to address batch effects in copy number estimation using SNP arrays. (2011) (47)
- Feature-level exploration of a published Affymetrix GeneChip control dataset (2006) (47)
- Proceedings of the second international molecular pathological epidemiology (MPE) meeting (2015) (45)
- Stem-like intestinal Th17 cells give rise to pathogenic effector T cells during autoimmunity (2021) (44)
- Gene expression anti-profiles as a basis for accurate universal cancer signatures (2012) (44)
- Oligonucleotide-microarray analysis of peripheral-blood lymphocytes in severe asthma. (2005) (44)
- Thawing Frozen Robust Multi-array Analysis (fRMA) (2011) (43)
- Discovery with Data: Leveraging Statistics with Computer Science to Transform Science and Society (2014) (42)
- Validation and extension of an empirical Bayes method for SNP calling on Affymetrix microarrays (2008) (41)
- Leydig cell gene expression: effects of age and caloric restriction (2004) (41)
- A statistical framework for the analysis of microarray probe-level data (2007) (40)
- A multi-omic analysis of human naïve CD4+ T cells (2015) (40)
- In vitro identification and in silico utilization of interspecies sequence similarities using GeneChip® technology (2005) (39)
- Consolidated strategy for the analysis of microarray spike-in data (2008) (39)
- Prenatal development of intrafetal and maternal-fetal synchrony. (2006) (39)
- Deficiency of different nitric oxide synthase isoforms activates divergent transcriptional programs in cardiac hypertrophy. (2003) (38)
- fRMA ST: frozen robust multiarray analysis for Affymetrix Exon and Gene ST arrays (2012) (38)
- Overlapping euchromatin/heterochromatin- associated marks are enriched in imprinted gene regions and predict allele-specific modification. (2008) (36)
- Performance evaluation of commercial miRNA expression array platforms (2010) (34)
- Bisulfite-independent analysis of CpG island methylation enables genome-scale stratification of single cells (2017) (34)
- Generalized Additive Selection Models for the Analysis of Studies with Potentially Nonignorable Missing Outcome Data (2003) (34)
- An investigation of the second- and higher-order spectra of music (1998) (30)
- The Role of Academia in Data Science Education (2020) (30)
- Analysis of Affymetrix GeneChip data using amplified RNA. (2006) (27)
- Genome-wide methylation profiling reveals Zinc finger protein 516 (ZNF516) and FK-506-binding protein 6 (FKBP6) promoters frequently methylated in cervical neoplasia, associated with HPV status and ethnicity in a Chilean population (2014) (27)
- Improved base-calling and quality scores for 454 sequencing based on a Hurdle Poisson model (2012) (24)
- Accounting for GC-content bias reduces systematic errors and batch effects in ChIP-seq data (2016) (24)
- Unstable heart rate and temperature regulation predict mortality in AKR/J mice. (2003) (24)
- Corrigendum: Differential expression analysis of RNA-seq data at single-base resolution (2014) (23)
- Top-down standards will not serve systems biology (2006) (23)
- Estimating Genome-Wide Copy Number Using Allele-Specific Mixture Models (2008) (22)
- Performance assessment of copy number microarray platforms using a spike-in experiment (2011) (22)
- FROZEN ROBUST MULTI-ARRAY ANALYSIS (fRMA) (2009) (22)
- Editor's note on Zheng et al. and Rahmani et al. (2017) (21)
- From CEL Files to Annotated Lists of Interesting Genes (2005) (20)
- When to use Quantile Normalization? (2014) (20)
- A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs (2018) (19)
- Local Harmonic Estimation in Musical Sound Signals (2001) (19)
- Quantile normalization of single-cell RNA-seq read counts without unique molecular identifiers (2019) (19)
- Erratum: A benchmark for RNA-seq quantification pipelines [Genome Biol. (2016), 17, 74], DOI: 10.1186/s13059-016-0940-1 (2016) (18)
- Information and Posterior Probability Criteria for Model Selection in Local Likelihood Estimation (2001) (18)
- Quantifying the dynamics of migration after Hurricane Maria in Puerto Rico (2020) (17)
- Global mRNA expression analysis in myosin II deficient strains of Saccharomyces cerevisiae reveals an impairment of cell integrity functions (2008) (16)
- Assessing Homeostasis Through Circadian Patterns (2001) (16)
- Introduction to Data Science (2019) (16)
- Genome-wide repressive capacity of promoter DNA methylation is revealed through epigenomic manipulation (2018) (16)
- ChIP-PED enhances the analysis of ChIP-seq and ChIP-chip data (2013) (15)
- Statistics and Music: Fitting a Local Harmonic Model to Musical Sound Signals (1998) (15)
- Detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes (2020) (15)
- Stochastic Models Based on Molecular Hybridization Theory for Short Oligonucleotide Microarrays (2003) (15)
- High-resolution spatial normalization for microarrays containing embedded technical replicates (2006) (15)
- Weighted Estimation of Harmonic Components in a Musical Sound Signal (2002) (15)
- Effectiveness estimates of three COVID-19 vaccines based on observational data from Puerto Rico (2022) (15)
- Proceedings of the third international molecular pathological epidemiology (MPE) meeting (2016) (15)
- BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions (2012) (14)
- Cell type-specific inference of differential expression in spatial transcriptomics (2021) (13)
- Interpretable Convolution Methods for Learning Genomic Sequence Motifs (2018) (12)
- Assessments of Affymetrix GeneChip Microarray Quality for Laboratories and Single Samples (2011) (12)
- Improved statistical analysis of budding yeast TAG microarrays revealed by defined spike-in pools (2005) (12)
- A Flexible Statistical Framework for Estimating Excess Mortality (2022) (11)
- Time-Varying Effectiveness of Three COVID-19 Vaccines in Puerto Rico (2021) (11)
- derfinder: Software for annotation-agnostic RNA-seq differential expression analysis (2015) (11)
- Monitoring Health Systems by Estimating Excess Mortality (2020) (9)
- Varying-Censoring Aware Matrix Factorization for Single Cell RNA-Sequencing (2017) (9)
- Missing Data and Technical Variability in Single-Cell RNA-Sequencing Experiments (2017) (9)
- Selection Corrected Statistical Inference for Region Detection with High-throughput Assays (2016) (9)
- Multiple Lab Comparison of Microarray Platforms (2004) (9)
- methylCC: technology-independent estimation of cell type composition using differentially methylated regions (2019) (9)
- Reply to “Reassessing the abundance of H3K9me2 chromatin domains in embryonic stem cells” (2010) (8)
- Transcriptomics: Translation of Global Expression Analysis to Genomic Medicine (2009) (8)
- Analysis of genetic interactions on a genome-wide scale in budding yeast: diploid-based synthetic lethality analysis by microarray. (2008) (8)
- Fast Wavelet Based Functional Models for Transcriptome Analysis with Tiling Arrays (2010) (8)
- A probabilistic gene expression barcode for annotation of cell types from single-cell RNA-seq data. (2022) (8)
- Post-Hurricane Vital Statistics Expose Fragility of Puerto Rico’s Health System (2018) (7)
- Corrigendum: Multiple-laboratory comparison of microarray platforms (2005) (7)
- Probabilistic gene expression signatures identify cell-types from single cell RNA-seq data (2020) (7)
- ASYMPTOTIC DISTRIBUTION OF ESTIMATES FOR A TIME- VARYING PARAMETER IN A HARMONIC MODEL WITH MULTIPLE FUNDAMENTALS (2000) (7)
- ASSOCIATON TESTS THAT ACCOMMODATE GENOTYPING ERRORS (2009) (7)
- The partitioned LASSO-patternsearch algorithm with application to gene expression data (2012) (7)
- Machine learning in practice (2019) (6)
- Time-varying effectiveness of the mRNA-1273, BNT162b2 and Ad26.COV2.S vaccines against SARS-CoV-2 infections and COVID-19 hospitalizations and deaths: an analysis based on observational data from Puerto Rico (2021) (6)
- Response to Shields: 'MIAME, we have a problem'. (2006) (6)
- A benchmark for RNAseq quantification pipelines (2016) (6)
- Stacking the deck: double-tiled DNA microarrays (2006) (5)
- Significance Analysis for Clustering with Single-Cell RNA-Sequencing Data (2022) (5)
- Data Analysis for the Life Sciences (2015) (5)
- FEATURE-LEVEL EXPLORATION OF THE CHOE ET AL. AFFYMETRIX GENECHIP CONTROL DATASET (2006) (5)
- A Statistical Analysis of Radiolabeled Gene Expression Data (2001) (5)
- Some wavelet-based analyses of Markov chain data (2000) (5)
- Meta analysis of microbiome studies identifies shared and disease-specific patterns (2017) (5)
- Functional genomics of sleep and circadian rhythm selected contribution: Circadian rhythm variation in activity, body temperature, and heart rate between C3H/HeJ and C57BL/6J inbred strains. Commentary (2002) (5)
- Processing and Analyzing Affymetrix SNP Chips with Bioconductor (2009) (5)
- Meta-analysis of gut microbiome studies identifies disease-specific and shared responses (2017) (5)
- Local Regression With Meaningful Parameters (2001) (5)
- Visualization and probability-based scoring of structural variants within repetitive sequences (2014) (4)
- Automatic methods for generating seismic intensity maps (2001) (4)
- Author Correction: Detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes (2020) (4)
- To Pool or Not to Pool: A Question of Microarray Experimental Design (2004) (4)
- Erratum to: A benchmark for RNA-seq quantification pipelines (2016) (4)
- KRLMM: an adaptive genotype calling method for common and low frequency variants (2014) (4)
- Statistical analysis of fitness data determined by TAG hybridization on microarrays. (2008) (4)
- Author Correction: Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model (2020) (3)
- Wavelet-based functional mixed models for transcriptome analysis (2009) (3)
- Vaginal microbiome topic modeling of laboring Ugandan women with and without fever (2021) (3)
- Mortality in Puerto Rico after Hurricane (2018) (3)
- A benchmark for RNA-seq quantification pipelines (2016) (3)
- Promoter Hypermethylation in MLL-r Leukemia: Biology and Therapeutic Targeting. (2009) (3)
- The Additive Sinusoidal Plus Residual Model: A Statistical Analysis (1998) (3)
- Retraction: Functional dissection of lysine deacetylases reveals that HDAC1 and p300 regulate AMPK (2013) (3)
- Choosing Smoothness Parameters for Smoothing Splines by Minimizing and Estimate of Risk (2004) (2)
- Erratum: Gene set enrichment analysis made simple (Statistical Methods in Medical Research (2009) 18:6 (565-575)) (2011) (2)
- The analysis of tiling array data using wavelet based functional mixed models (2009) (2)
- The bright future of applied statistics (2014) (2)
- Erratum to: A benchmark for RNA-seq quantification pipelines (2016) (2)
- IVT-seq reveals extreme bias in RNA sequencing (2014) (2)
- Hands-On : A Framework for Oligonucleotide Microarrays Preprocessing (2010) (2)
- Data Analysis for the Life Sciences with R (2016) (2)
- Importing data (2019) (2)
- methylCC: technology-independent estimation of cell type composition using differentially methylated regions (2017) (2)
- Using the charm package to estimate DNA methylation levels and find differentially methylated regions (2010) (2)
- Context Aware Group Nearest Shrunken Centroids in Large-Scale Genomic Studies (2014) (2)
- Capturing discrete latent structures: choose LDs over PCs. (2021) (2)
- KRLMM: an adaptive genotype calling method for common and low frequency variants (2014) (1)
- Gene Expression Barcodes Based on Data from 8,277 Microarrays (2009) (1)
- Measuring cell-type specific differential methylation in human brain tissue (2013) (1)
- Detection of allele-specific expression in spatial transcriptomics with spASE (2021) (1)
- MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens (2014) (1)
- Differential richness inference for 16S rRNA marker gene surveys (2022) (1)
- The caret package (2019) (1)
- Reshaping data (2019) (1)
- Measures of gene expression for affymetrix high density oligonucleotide arrays (2003) (1)
- Large hypomethylated blocks as a universal defining epigenetic alteration in human solid tumors (2014) (1)
- Gene expression anti-profiles as a basis for accurate universal cancer signatures (2012) (1)
- Git and GitHub (2019) (1)
- Validating Complex Biology: How Arrays Can Complement Your Next-Gen Data (2012) (1)
- Parameters with Musical Interpretations (2004) (1)
- Quantifying the Dynamics of Migration after a Disaster: Impact of Hurricane Maria in Puerto Rico (2020) (1)
- A MULTILEVEL MODEL TO ADDRESS BATCH EFFECTS IN COPY NUMBER USING SNP ARRAYS (2009) (1)
- development of heart failure cardiomyopathy : shared and distinct genes in the Gene expression analysis of ischemic and nonischemic (2005) (1)
- Parsing dates and times (2019) (0)
- Quantile normalization of single-cell RNA-seq read counts without unique molecular identifiers (2020) (0)
- Proceedings of the third international molecular pathological epidemiology (MPE) meeting (2017) (0)
- Organizing with Unix (2019) (0)
- Identification of a Gene Expression Profile That Differentiates Between Ischemic and Nonischemic Cardiomyopathy Heart Failure (2004) (0)
- Aryee Interindividual Heterogeneity in Prostate Cancer Metastases DNA Methylation Alterations Exhibit Intraindividual Stability and (2013) (0)
- Probabilistic gene signatures identify cell-types in single-cell RNAseq data (2020) (0)
- Text mining (2019) (0)
- 2 Preprocessing High-density Oligonucleotide Arrays (2005) (0)
- Linear models (2019) (0)
- Random variables (2019) (0)
- Additional file 19: Figure S10. of A multi-omic analysis of human naĂŻve CD4+ T cells (2015) (0)
- Identifying Methylation Changes Driving Evolution of Relapse in MLL-Rearranged Acute Lymphoblastic Leukemias (2014) (0)
- Introduction to productivity tools (2019) (0)
- Gene expression Comparison of Affymetrix GeneChip expression measures (2005) (0)
- Erratum to: A benchmark for RNA-seq quantification pipelines (2016) (0)
- Introduction to machine learning (2019) (0)
- Data visualization principles (2019) (0)
- C3H/HeJ and C57BL/6J inbred strains activity, body temperature, and heart rate between Selected Contribution: Circadian rhythm variation in (2015) (0)
- Erratum (2011) (0)
- Getting started with R and RStudio (2019) (0)
- Reproducible projects with RStudio and R markdown (2019) (0)
- Abstract 2924: Genome-wide microarray platforms uncover novel hypermethylated genes in an oral squamous cell carcinoma case-control study: A phase I preclinical biomarker development study (2010) (0)
- String processing (2019) (0)
- 1 Preprocessing Overview (0)
- 5-22-2009 FROZEN ROBUST MULTI-ARRAY ANALYSIS ( f RMA ) (2013) (0)
- Proceedings of the second international molecular pathological epidemiology (MPE) meeting (2015) (0)
- R basics (2019) (0)
- NO . 1166 August 23 , 2011 The Partitioned LASSO-Pattersearch Algorithm With Application to Gene Expression Data (2011) (0)
- huex.1.0.st.v2frmavecs (2017) (0)
- Basic Machine Learning (2016) (0)
- Programming basics (2019) (0)
- Joining tables (2019) (0)
- Inference for High Dimensional Data (2016) (0)
- 2-3-2010 WAVELET BASED FUNCTIONAL MODELS FOR TRANSCRIPTOME ANALYSIS WITH TILING ARRAYS (2013) (0)
- Age and sun exposure-related widespread genomic blocks of hypomethylation in nonmalignant skin (2015) (0)
- Regression (2019) (0)
- Probability (2019) (0)
- S IGNIFICANCE A NALYSIS FOR C LUSTERING WITH S INGLE -C ELL RNA-S EQUENCING D ATA (2022) (0)
- Statistical Analysis of Sound Signals Using a Local Harmonic Model (1998) (0)
- Author Correction: Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model (2020) (0)
- Characterizing batch effects and binding site-specific variability in ChIP-seq data (2021) (0)
- 1-29-2009 ASSOCIATON TESTS THAT ACCOMMODATE GENOTYPING ERRORS (2018) (0)
- Correcting for cell-type heterogeneity in epigenome-wide association studies: premature analyses and conclusions (2017) (0)
- Clustering (2019) (0)
- ABSTRACTS FROM THE TWENTY-SECOND ANNUAL MEETING OF THE INTERNATIONAL GENETIC EPIDEMIOLOGY SOCIETY (2013) (0)
- Improved base-calling and quality scores for 454 sequencing based on a Hurdle Poisson model (2012) (0)
- Large datasets (2019) (0)
- Association is not causation (2019) (0)
- De novo detection and accurate False Discovery Rate control of differentially methylated regions from Whole Genome Bisulfite Sequencing : Supplementary Materials (2017) (0)
- Abstract 2658: Genome-wide mistargeting of oncogenic SWI/SNF(BAF) complexes in SMARCB1(BAF47)-deficient sarcomas (2016) (0)
- Assessing homeostasis through circadian patterns: an application of REACT (2000) (0)
- Title A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs . Running title lncRNAs in Drosophila neurogenesis (2018) (0)
- Web scraping (2019) (0)
- Distance and Dimension Reduction (2016) (0)
- Data visualization in practice (2019) (0)
- Statistical inference (2019) (0)
- All-cause excess mortality across 90 municipalities in Gujarat, India, during the COVID-19 pandemic (March 2020-April 2021) (2022) (0)
- Estimating Genome-Wide Copy Number Using Allele Specific Mixture Models (2007) (0)
- 4-21-2009 GENE SET ENRICHMENT ANALYSIS MADE SIMPLE (2018) (0)
- Introduction to statistics with R (2019) (0)
- Smoothing (2019) (0)
- Robust summaries (2019) (0)
- Vaginal microbiome topic modeling of laboring Ugandan women with and without fever (2020) (0)
- Examples of algorithms (2019) (0)
- Erratum to: A benchmark for RNA-seq quantification pipelines (2016) (0)
- hugene.1.0.st.v1frmavecs (2017) (0)
- Introduction to data visualization (2019) (0)
- Lecture 5 : Model selection and assessment (2010) (0)
- Visualizing data distributions (2019) (0)
- Accounting for cellular heterogeneity is critical in epigenome-wide association studies (2014) (0)
- Gene expression analysis of ischemic and nonischemic cardiomyopathy : Shared and distinct genes in the development of heart failure Kittleson : Gene expression by heart failure etiology (2005) (0)
- Additional file 25. of A multi-omic analysis of human naĂŻve CD4+ T cells (2015) (0)
- Genotype Calls and Copy Number Analysis with the oligo Package (2008) (0)
- Introduction to data wrangling (2019) (0)
- nEMD on Spatio-Temporal Data: A Case Study of Geographical Dengue Epidemics (2006) (0)
- quantro: a data-driven approach to guide the choice of an appropriate normalization method (2015) (0)
- REDEFINING CpG ISLANDS USING A HIDEEN MARKOV MODEL (2018) (0)
- Statistical models (2019) (0)
- Cross validation (2019) (0)
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