Ramón Doallo
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Ramón Doallocomputer-science Degrees
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Parallel Computing
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Computer Science
Ramón Doallo's Degrees
- PhD Computer Science University of A Coruña
- Masters Computer Science University of A Coruña
- Bachelors Computer Science University of A Coruña
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(Suggest an Edit or Addition)Ramón Doallo's Published Works
Published Works
- jModelTest 2: more models, new heuristics and parallel computing (2012) (12740)
- ProtTest 3: fast selection of best-fit models of protein evolution (2011) (2294)
- ProtTest-HPC: Fast Selection of Best-Fit Models of Protein Evolution (2010) (466)
- Parallel Programming with Polaris (1996) (382)
- Parameter estimation in large-scale systems biology models: a parallel and self-adaptive cooperative strategy (2017) (139)
- Java in the High Performance Computing arena: Research, practice and experience (2013) (105)
- Performance analysis of HPC applications in the cloud (2013) (100)
- Performance Evaluation of MPI, UPC and OpenMP on Multicore Architectures (2009) (100)
- High performance genetic algorithm for land use planning (2013) (91)
- High-performance VLSI architecture for the Viterbi algorithm (1997) (72)
- Adaptive line placement with the set balancing cache (2009) (69)
- Automatic analytical modeling for the estimation of cache misses (1999) (66)
- Advanced Program Restructuring for High-Performance Computers with Polaris (2000) (65)
- CPPC: a compiler‐assisted tool for portable checkpointing of message‐passing applications (2010) (55)
- Research Article: A GIS-embedded system to support land consolidation plans in Galicia (2003) (54)
- F-MPJ: scalable Java message-passing communications on parallel systems (2012) (46)
- Enhanced parallel Differential Evolution algorithm for problems in computational systems biology (2015) (44)
- CPPC: a compiler-assisted tool for portable checkpointing of message-passing applications (2010) (41)
- XARK: An extensible framework for automatic recognition of computational kernels (2008) (41)
- Java Fast Sockets: Enabling high-speed Java communications on high performance clusters (2008) (39)
- A population-based iterated greedy algorithm for the delimitation and zoning of rural settlements (2013) (39)
- Java for high performance computing: assessment of current research and practice (2009) (35)
- Probabilistic Miss Equations: Evaluating Memory Hierarchy Performance (2003) (33)
- High performance air pollution modeling for a power plant environment (2003) (32)
- Implementing Parallel Differential Evolution on Spark (2016) (30)
- General‐purpose computation on GPUs for high performance cloud computing (2013) (28)
- Performance analysis of Java message-passing libraries on fast Ethernet, Myrinet and SCI clusters (2003) (28)
- A multi‐GPU shallow‐water simulation with transport of contaminants (2013) (27)
- NPB-MPJ: NAS Parallel Benchmarks Implementation for Message-Passing in Java (2009) (27)
- Automated and accurate cache behavior analysis for codes with irregular access patterns (2007) (23)
- A cloud-based enhanced differential evolution algorithm for parameter estimation problems in computational systems biology (2017) (21)
- Modeling set associative caches behavior for irregular computations (1998) (21)
- Evaluation of Java for General Purpose GPU Computing (2013) (21)
- Analysis of I/O Performance on an Amazon EC2 Cluster Compute and High I/O Platform (2013) (21)
- Evaluation of UPC programmability using classroom studies (2009) (21)
- A GSA-based compiler infrastructure to extract parallelism from complex loops (2003) (20)
- Parallel Architecture for Fast Transforms with Trigonometric Kernel (1994) (19)
- COPA: a GIS-based tool for land consolidation projects (2001) (19)
- An Inspector-Executor Algorithm for Irregular Assignment Parallelization (2004) (18)
- A compiler tool to predict memory hierarchy performance of scientific codes (2004) (18)
- Precise automatable analytical modeling of the cache behavior of codes with indirections (2007) (18)
- FastMPJ: a scalable and efficient Java message-passing library (2014) (17)
- Solving Large Problem Sizes of Index-Digit Algorithms on GPU: FFT and Tridiagonal System Solvers (2018) (16)
- Parallel Metaheuristics in Computational Biology: An Asynchronous Cooperative Enhanced Scatter Search Method (2015) (15)
- A simulated annealing algorithm for zoning in planning using parallel computing (2016) (15)
- Cache probabilistic modeling for basic sparse algebra kernels involving matrices with a non-uniform distribution (1998) (14)
- Using the Cloud for Parameter Estimation Problems: Comparing Spark vs MPI with a Case-Study (2017) (14)
- Memory Hierarchy Performance Prediction for Blocked Sparse Algorithms (1999) (14)
- Gaussian elimination with pivoting on hypercubes (1990) (14)
- Adaptive Set-Granular Cooperative Caching (2012) (13)
- High Performance Air Pollution Simulation Using OpenMP (2002) (13)
- UPC performance evaluation on a multicore system (2009) (13)
- A Fast Solver for Large Tridiagonal Systems on Multi-Core Processors (Lass Library) (2019) (13)
- Evaluation of messaging middleware for high-performance cloud computing (2013) (12)
- Compiler support for parallel code generation through kernel recognition (2004) (12)
- Cache Misses Prediction for High Performance Sparse Algorithms (1998) (12)
- High Performance Java Sockets for Parallel Computing on Clusters (2007) (12)
- UPCBLAS: a library for parallel matrix computations in Unified Parallel C (2012) (12)
- A parallel metaheuristic for large mixed-integer dynamic optimization problems, with applications in computational biology (2017) (11)
- Designing Efficient Index-Digit Algorithms for CUDA GPU Architectures (2016) (11)
- Influence of memory access patterns to small-scale FFT performance (2013) (11)
- The STEM-II air quality model on a distributed memory system (2001) (11)
- Accurate prediction of the behavior of multithreaded applications in shared caches (2013) (11)
- A middleware architecture for distributed systems management (2004) (10)
- Evaluation of Parallel Differential Evolution Implementations on MapReduce and Spark (2016) (10)
- Big data storage technologies: a case study for web-based LiDAR visualization (2018) (10)
- BPLG: A Tuned Butterfly Processing Library for GPU Architectures (2015) (10)
- Big Data Geospatial Processing for Massive Aerial LiDAR Datasets (2020) (10)
- Performance Evaluation of Unified Parallel C Collective Communications (2009) (9)
- Automated and accurate cache behavior analysis for codes with irregular access patterns: Research Articles (2007) (9)
- GVLiDAR: an interactive web-based visualization framework to support geospatial measures on lidar data (2017) (9)
- Analytical modeling of codes with arbitrary data-dependent conditional structures (2006) (9)
- Efficient parallel numerical solver for the elastohydrodynamic Reynolds-Hertz problem (2001) (9)
- FFT Implementation on a Streaming Architecture (2011) (9)
- Efficient parallel implementations for surface subdivision (2002) (9)
- Efficient Java Communication Protocols on High-speed Cluster Interconnects (2006) (9)
- Device level communication libraries for high‐performance computing in Java (2011) (8)
- Design and Implementation of MapReduce Using the PGAS Programming Model with UPC (2011) (8)
- Designing efficient Java communications on clusters (2005) (8)
- Design of efficient Java message-passing collectives on multi-core clusters (2011) (8)
- High-performance computing selection of models of DNA substitution for multicore clusters (2014) (8)
- Progressive radiosity method on clusters using a new clipping algorithm (2004) (8)
- Reducing capacity and conflict misses using Set Saturation Levels (2010) (8)
- Web-GIS tool for the management of rural land markets (2013) (8)
- Towards cloud-based parallel metaheuristics (2018) (8)
- Hierarchical Radiosity on Multicomputers: a Load-Balanced Approach (2001) (8)
- Software tools for multiprocessor simulation and programming (1990) (7)
- Design of scalable Java message-passing communications over InfiniBand (2012) (7)
- New Tridiagonal Systems Solvers on GPU Architectures (2015) (7)
- Parallel Sparse Modified Gram-Schmidt QR Decomposition (1996) (7)
- A Parallel Differential Evolution Algorithm for Parameter Estimation in Dynamic Models of Biological Systems (2014) (7)
- Parallel global illumination method based on a nonuniform partitioning of the scene (2005) (6)
- Characterization of message-passing overhead on the AP3000 multicomputer (2001) (6)
- On Processing Extreme Data (2016) (6)
- Automatic Generation of Optimized OpenCL Codes Using OCLoptimizer (2015) (6)
- Spark implementation of the enhanced Scatter Search metaheuristic: Methodology and assessment (2020) (6)
- Performance Evaluation and Modeling of the Fujitsu AP3000 Message-Passing Libraries (1999) (6)
- Fault-tolerant solutions for a MPI compute intensive application (2007) (6)
- A framework focus on configuration modeling and integration with transparent persistence (2005) (6)
- Optimizing Monte Carlo radiosity on graphics hardware (2011) (5)
- Program Behavior Characterization Through Advanced Kernel Recognition (2007) (5)
- Modeling Execution Time of Selected Computation and Communication Kernels on Grids (2005) (5)
- A Parallel Numerical Library for UPC (2009) (5)
- Sparse Householder QR factorization on a mesh (1996) (5)
- A Compiler Framework to Detect Parallelism in Irregular Codes (2001) (5)
- Performance evaluation of GPU memory hierarchy using the FFT (2012) (5)
- Modeling MPI Collective Communications on the AP3000 Multicomputer (1999) (5)
- Towards a High Level Approach for the Programming of Heterogeneous Clusters (2016) (5)
- Efficient Scan Operator Methods on a GPU (2014) (5)
- Developing adaptive multi-device applications with the Heterogeneous Programming Library (2015) (5)
- A Grid-Enabled Air Quality Simulation (2003) (5)
- Design of Scalable Java Communication Middleware for Multi-Core Systems (2013) (5)
- Simulation of pollutant transport in shallow water on a CUDA architecture (2011) (5)
- Optimizing parcel exchange among landowners: A soft alternative to land consolidation (2020) (5)
- Scalable Java Communication Middleware for Hybrid Shared/Distributed Memory Architectures (2011) (5)
- Static Prediction of Worst-Case Data Cache Performance in the Absence of Base Address Information (2009) (5)
- A VLSI systolic architecture for fuzzy clustering (1988) (5)
- Parallelization of the STEM-II Air Quality Model (2001) (5)
- Performance analysis of message-passing libraries on high-speed clusters (2010) (4)
- Performance Evaluation of Data-Intensive Computing Applications on a Public IaaS Cloud (2016) (4)
- ACLE: A Software Package for SIMD Computer Simulation (1990) (4)
- Design and Implementation of an Extended Collectives Library for Unified Parallel C (2013) (4)
- A VLSI Systolic Architecture for Solving DBT-Transformed Fuzzy Clustering Problems of Arbitrary Size (1990) (4)
- Compiler-Assisted Checkpointing of Parallel Codes: The Cetus and LLVM Experience (2013) (4)
- Direct mapped cache performance modeling for sparse matrix operations (1999) (4)
- A GIS web-based tool for the management of the PGI potato of Galicia (2004) (4)
- High Performance Global Illumination on Multi-core Architectures (2009) (4)
- High productivity multi-device exploitation with the Heterogeneous Programming Library (2017) (4)
- Performance Modeling and Evaluation of MPI-I/O on a Cluster (2002) (4)
- Writing Self-adaptive Codes for Heterogeneous Systems (2014) (4)
- Tree Partitioning Reduction: A New Parallel Partition Method for Solving Tridiagonal Systems (2019) (4)
- Performance Modeling and Evaluation of Java Message-Passing Primitives on a Cluster (2003) (3)
- Heterogeneous distributed computing based on high‐level abstractions (2018) (3)
- Semisystolic architecture for fast Hartley transform: decimation in frequency and radix 2 (1991) (3)
- A parallel algorithm based on simulated annealing for land use zoning plans (2011) (3)
- HPF-2 Support for Dynamic Sparse Computations (1998) (3)
- A fine‐grained thread‐aware management policy for shared caches (2014) (3)
- HPC selection of models of DNA substitution (2011) (3)
- Running scientific codes on amazon EC2: a performance analysis of five high-end instances (2013) (3)
- Dynamic Load-Balancing for the STEM-II Air Quality Model (2006) (3)
- Cache Behavior Modelling for Codes Involving Banded Matrices (2006) (3)
- Set Associative Cache Behavior Optimization (1999) (3)
- A Hierarchical Radiosity Method with Scene Distribution (2007) (3)
- Multimethod optimization in the cloud: A case‐study in systems biology modelling (2018) (3)
- Cache Behavior Modeling of Codes with Data-Dependent Conditionals (2003) (3)
- Tree Partitioning Reduction (2019) (2)
- Special Issue: Current Trends in Compilers for Parallel Computers (2007) (2)
- A Cluster-Based Solution for a High Performance Air Quality Simulation (2002) (2)
- High Performance Computing of an Industrial Problem in Tribology (1998) (2)
- CPPC-G: Fault-Tolerant Parallel Applications on the Grid (2007) (2)
- A PVM-Based Library for Sparse Matrex Factorizations (1998) (2)
- Efficient Java Communication Libraries over InfiniBand (2009) (2)
- Analysis of interval‐grouped data in weed science: The binnednp Rcpp package (2019) (2)
- BPLG–BMCS: GPU-sorting algorithm using a tuning skeleton library (2015) (2)
- A parallel algorithm for an elastohydrodynamic piezoviscous lubrication problem (1999) (2)
- Facilitating the development of stencil applications using the Heterogeneous Programming Library (2017) (2)
- Irregular Assignment Computations on cc-NUMA Multiprocessors (2002) (2)
- Non-blocking Java Communications Support on Clusters (2006) (2)
- Improving the Performance of Visibility Determination in Global Illumination Methods (2005) (2)
- Hybrid parallel multimethod hyperheuristic for mixed-integer dynamic optimization problems in computational systems biology (2019) (2)
- Address-Independent Estimation of the Worst-Case Memory Performance (2010) (2)
- SPLG: A Tuned Signal Processing Library for GPU Architectures (2013) (2)
- Parallel prefix operations on GPU: tridiagonal system solvers and scan operators (2018) (2)
- A Meshing Scheme for Real Time Surface Subdivision (2002) (2)
- Ontological Configuration Management for Wireless Mesh Routers (2009) (2)
- An efficient ant colony optimization framework for HPC environments (2021) (2)
- A High-Performance Progressive Radiosity Method Based on Scene Partitioning (2002) (2)
- Modeling the Cache Behavior of Codes with Arbitrary Data-Dependent Conditional Structures (2004) (1)
- Land consolidation through parcel exchange among landowners using a distributed Spark-based genetic algorithm (2022) (1)
- An automatic optimizer for heterogeneous devices (2020) (1)
- High performance computing of an industrial problem in tribology : (Best student paper award : First prize) (1999) (1)
- Static analysis of the worst-case memory performance for irregular codes with indirections (2012) (1)
- Synthesis of Multiresolution Scenes with Global Illumination on a GPU (2016) (1)
- Graphics processing unit computing and exploitation of hardware accelerators (2013) (1)
- Towards Detection of Coarse-Grain Loop-Level Parallelism in Irregular Computations (2002) (1)
- A DBT-based VLSI systolic architecture for hard squared error clustering (1989) (1)
- On designing portable checkpointing tools for large-scale parallel applications (2005) (1)
- Parallel Monte Carlo radiosity using scene partitioning (2013) (1)
- Implementing cloud-based parallel metaheuristics: an overview (2018) (1)
- Multimethod Optimization for Reverse Engineering of Complex Biological Networks (2018) (1)
- Sparse Matrix Operations In Vector And ParallelProcessors (1997) (1)
- An Approach to Decrease Fill-in in Sparse Orthogonalizations on aMIMD Computer (1996) (1)
- Hierarchical Radiosity for Multiresolution Systems Based on Normal Tests (2010) (1)
- Performance analysis of MPI-I/O primitives on a PC cluster (2002) (1)
- Multicore cache hierarchies: design and programmability issues (2014) (1)
- A Grid Portal to Support High-Performance Scientific Computing on Distributed Resources (2004) (1)
- A Parallel Approach for Solving a Lubrication Problem in Industrial Devices (1999) (1)
- Address independent estimation of the boundaries of cache performance (2014) (1)
- High Performance Air Quality Simulation in the European CrossGrid Project (2006) (1)
- A Java-based parallel genetic algorithm for the land use planning problem (2011) (1)
- Special issue editorial: Exploitation of hardware accelerators (2012) (0)
- Analysis of I/O Performance on an Amazon EC2 Cluster Compute and High I/O Platform (2013) (0)
- FastMPJ: a scalable and efficient Java message-passing library (2014) (0)
- BPLG: A Tuned Butterfly Processing Library for GPU Architectures (2014) (0)
- Technology Independent Power Estimation in CMOS Integrated Circuits (1998) (0)
- Low‐latency Java communication devices on RDMA‐enabled networks (2015) (0)
- Increasing the throughput of available resources using management tools based on Grid technologies (2003) (0)
- Special issue editorial: Accelerators for high-performance computing (2012) (0)
- Advanced Program Restructuring for High-Performance (1996) (0)
- Message from HPSEC Workshop Co-chairs (2006) (0)
- Parallel hierarchical radiosity on hybrid platforms (2011) (0)
- Efficient high-precision integer multiplication on the GPU (2022) (0)
- Using an Analytical Model of Shared Caches for Selecting the Optimal Parallelization Scheme (2012) (0)
- HPC Selection of Models of DNA Substitution for Multicore Clusters (2012) (0)
- Efficient Solving of Scan Primitive on Multi-GPU Systems (2018) (0)
- Guiding the Optimization of Parallel Codes on Multicores Using an Analytical Cache Model (2018) (0)
- High-performance Monte Carlo radiosity on GPU based on scene partitioning (2012) (0)
- Virtually split cache (2013) (0)
- Evaluation of messaging middleware for high-performance cloud computing (2012) (0)
- Desing of a pattern fuzzy cluster using systolic array (1985) (0)
- Topic 4: High-Performance Architectures and Compilers - (Introduction) (2013) (0)
- Solving the Least Squares Problem for Sparse Matriceson the AP 1000 (2007) (0)
- Uniform partitioning of Monte Carlo radiosity on GPUs (2010) (0)
- Air Pollution Modeling in the CrossGrid Project (2004) (0)
- Bayesian image restoration: Parallel implementation on a SGI origin multiprocessor (2000) (0)
- Towards Low-Latency Model-Oriented Distributed Systems Management (2007) (0)
- F-MPJ: scalable Java message-passing communications on parallel systems (2009) (0)
- Influence of memory access patterns to small-scale FFT performance (2012) (0)
- Design of scalable Java message-passing communications over InfiniBand (2011) (0)
- Special Issue: Current Trends in Compilers for Parallel Computers: Editorials (2007) (0)
- High performance air pollution simulation on shared memory systems (2004) (0)
- Developing adaptive multi-device applications with the Heterogeneous Programming Library (2015) (0)
- Design of a constant geometry fast Hartley transformer (1991) (0)
- Design and Implementation of an Extended Collectives Library for Unified Parallel C (2013) (0)
- Systolic architecture for the calculation of the correlation coefficients (1990) (0)
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