Rasmus Nielsen | Academic Influence

Rasmus Nielsen 's AcademicInfluence.com Rankings

Rasmus Nielsen

Biology

#2729

World Rank

#4300

Historical Rank

Evolutionary Biology

#71

World Rank

#85

Historical Rank

Molecular Biology

#237

World Rank

#241

Historical Rank

Genetics

#251

World Rank

#301

Historical Rank

biology Degrees

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Biology

Rasmus Nielsen 's Degrees

PhD Genetics University of California, Berkeley
Masters Biology University of Copenhagen
Bachelors Biology University of Copenhagen

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Why Is Rasmus Nielsen Influential?

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According to Wikipedia, Rasmus Nielsen is a Danish biologist and professor in the Department of Integrative Biology at the University of California, Berkeley. His research focuses on statistical genetics and computational genomics as they relate to evolutionary biology. Much of his research has focused on the molecular mechanisms of evolutionary adaptations. For example, in 2010, his research group discovered the variant in the EPAS1 gene that allows Tibetanss to live at high altitudes. His research has also identified an evolved genetic adaptation among the Inuit that allows them to metabolize fatty acids.

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Rasmus Nielsen 's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

A metagenome-wide association study of gut microbiota in type 2 diabetes (2012) (4798)
A Draft Sequence of the Neandertal Genome (2010) (3419)
Bayesian Inference of Phylogeny and Its Impact on Evolutionary Biology (2001) (2638)
Codon-substitution models for heterogeneous selection pressure at amino acid sites. (2000) (2270)
Bayes empirical bayes inference of amino acid sites under positive selection. (2005) (2049)
Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. (2005) (1633)
Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. (1998) (1628)
ANGSD: Analysis of Next Generation Sequencing Data (2014) (1578)
Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. (2000) (1516)
Molecular signatures of natural selection. (2005) (1467)
Multilocus Methods for Estimating Population Sizes, Migration Rates and Divergence Time, With Applications to the Divergence of Drosophila pseudoobscura and D. persimilis (2004) (1448)
Distinguishing migration from isolation: a Markov chain Monte Carlo approach. (2001) (1327)
Genotype and SNP calling from next-generation sequencing data (2011) (1318)
Evolutionary and Biomedical Insights from the Rhesus Macaque Genome (2007) (1309)
Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages. (2002) (1235)
Population genomics of Bronze Age Eurasia (2015) (1059)
The evolution of gene expression levels in mammalian organs (2011) (1052)
The sequence and de novo assembly of the giant panda genome (2010) (1018)
Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics (2007) (990)
The diploid genome sequence of an Asian individual (2008) (977)
A Scan for Positively Selected Genes in the Genomes of Humans and Chimpanzees (2005) (935)
Genomic scans for selective sweeps using SNP data. (2005) (888)
Natural selection on protein-coding genes in the human genome (2005) (784)
Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes (2011) (755)
Ancient human genome sequence of an extinct Palaeo-Eskimo (2010) (754)
Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans (2013) (744)
Altitude adaptation in Tibet caused by introgression of Denisovan-like DNA (2014) (740)
Stochastic mapping of morphological characters. (2003) (732)
Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse (2013) (706)
Statistical tests of selective neutrality in the age of genomics (2001) (696)
An Aboriginal Australian Genome Reveals Separate Human Dispersals into Asia (2011) (675)
Inferring Nonneutral Evolution from Human-Chimp-Mouse Orthologous Gene Trios (2003) (652)
Assessing the Evolutionary Impact of Amino Acid Mutations in the Human Genome (2008) (609)
Accuracy and Power of Statistical Methods for Detecting Adaptive Evolution in Protein Coding Sequences and for Identifying Positively Selected Sites (2004) (575)
Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution. (2005) (548)
Patterns of Positive Selection in Six Mammalian Genomes (2008) (538)
Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites. (2003) (536)
Species-specific responses of Late Quaternary megafauna to climate and humans (2011) (534)
The Use of Coded PCR Primers Enables High-Throughput Sequencing of Multiple Homolog Amplification Products by 454 Parallel Sequencing (2007) (515)
Recent and ongoing selection in the human genome (2007) (487)
Ascertainment bias in studies of human genome-wide polymorphism. (2005) (485)
Tracing the peopling of the world through genomics (2017) (479)
Pervasive adaptive evolution in mammalian fertilization proteins. (2003) (478)
Signatures of Environmental Genetic Adaptation Pinpoint Pathogens as the Main Selective Pressure through Human Evolution (2011) (478)
Localizing Recent Adaptive Evolution in the Human Genome (2007) (477)
Synonymous and nonsynonymous rate variation in nuclear genes of mammals (1998) (466)
The genome of a Late Pleistocene human from a Clovis burial site in western Montana (2014) (464)
Genomic evidence for the Pleistocene and recent population history of Native Americans (2015) (428)
Genome-Wide Patterns of Nucleotide Polymorphism in Domesticated Rice (2007) (425)
Ancient Biomolecules from Deep Ice Cores Reveal a Forested Southern Greenland (2007) (409)
Evidence for archaic adaptive introgression in humans (2015) (404)
Linkage Disequilibrium as a Signature of Selective Sweeps (2004) (403)
Proportionally more deleterious genetic variation in European than in African populations (2008) (386)
Early Divergent Strains of Yersinia pestis in Eurasia 5,000 Years Ago (2015) (385)
Models of amino acid substitution and applications to mitochondrial protein evolution. (1998) (384)
Estimation of population parameters and recombination rates from single nucleotide polymorphisms. (2000) (366)
Greenlandic Inuit show genetic signatures of diet and climate adaptation (2015) (363)
A genomic history of Aboriginal Australia (2016) (355)
The sequence and de novo assembly of the giant panda genome (2010) (341)
Simultaneous inference of selection and population growth from patterns of variation in the human genome (2005) (333)
Convergent evolution of the genomes of marine mammals (2015) (331)
A recent bottleneck of Y chromosome diversity coincides with a global change in culture (2015) (329)
Radiation of Extant Cetaceans Driven by Restructuring of the Oceans (2009) (328)
Mapping mutations on phylogenies. (2002) (323)
Complete Resequencing of 40 Genomes Reveals Domestication Events and Genes in Silkworm (Bombyx) (2009) (323)
Unlocking the vault: next‐generation museum population genomics (2013) (322)
Resequencing of 200 human exomes identifies an excess of low-frequency non-synonymous coding variants (2010) (322)
SNP Calling, Genotype Calling, and Sample Allele Frequency Estimation from New-Generation Sequencing Data (2012) (320)
Population Genomics Reveal Recent Speciation and Rapid Evolutionary Adaptation in Polar Bears (2014) (319)
Ascertainment biases in SNP chips affect measures of population divergence. (2010) (318)
Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European (2014) (314)
Mutation-selection models of codon substitution and their use to estimate selective strengths on codon usage. (2008) (309)
Genomic analyses inform on migration events during the peopling of Eurasia (2016) (309)
A common Greenlandic TBC1D4 variant confers muscle insulin resistance and type 2 diabetes (2014) (305)
Postglacial viability and colonization in North America’s ice-free corridor (2016) (300)
The cost of inbreeding in Arabidopsis (2002) (299)
137 ancient human genomes from across the Eurasian steppes (2018) (287)
The Genetic Cost of Neanderthal Introgression (2015) (287)
The genetic prehistory of the New World Arctic (2014) (285)
Genomic structure in Europeans dating back at least 36,200 years (2014) (285)
On Detecting Incomplete Soft or Hard Selective Sweeps Using Haplotype Structure (2014) (276)
Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques (2011) (276)
Statistical inferences in phylogeography (2009) (269)
Targets of balancing selection in the human genome. (2009) (261)
Ancient bacteria show evidence of DNA repair (2007) (251)
Ancient DNA reveals late survival of mammoth and horse in interior Alaska (2009) (245)
Adaptation and possible ancient interspecies introgression in pigs identified by whole-genome sequencing (2015) (243)
The first horse herders and the impact of early Bronze Age steppe expansions into Asia (2018) (243)
Prehistoric genomes reveal the genetic foundation and cost of horse domestication (2014) (241)
Statistical methods in molecular evolution (2005) (240)
Adaptive genic evolution in the Drosophila genomes (2007) (239)
Population genetic inference from genomic sequence variation. (2010) (235)
Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans (2018) (230)
Taxon sampling and the accuracy of large phylogenies. (1998) (228)
Inferring Demographic History from a Spectrum of Shared Haplotype Lengths (2013) (226)
Urinary Proteomics for Early Diagnosis in Diabetic Nephropathy (2012) (225)
Estimating effective paternity number in social insects and the effective number of alleles in a population (2003) (221)
The ancestry and affiliations of Kennewick Man (2015) (220)
Balancing Selection Maintains a Form of ERAP2 that Undergoes Nonsense-Mediated Decay and Affects Antigen Presentation (2010) (220)
Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers (2017) (213)
ngsTools: methods for population genetics analyses from next-generation sequencing data (2014) (203)
Classic Selective Sweeps Revealed by Massive Sequencing in Cattle (2014) (197)
Statistical assignment of DNA sequences using Bayesian phylogenetics. (2008) (196)
Early human dispersals within the Americas (2018) (195)
Calculation of Tajima’s D and other neutrality test statistics from low depth next-generation sequencing data (2013) (194)
Maternal age effect and severe germ-line bottleneck in the inheritance of human mitochondrial DNA (2014) (192)
Massive haplotypes underlie ecotypic differentiation in sunflowers (2019) (189)
Ancient DNA chronology within sediment deposits: are paleobiological reconstructions possible and is DNA leaching a factor? (2007) (185)
Quantifying Population Genetic Differentiation from Next-Generation Sequencing Data (2013) (180)
POPULATION SIZE CHANGES RESHAPE GENOMIC PATTERNS OF DIVERSITY (2007) (180)
Estimation of allele frequency and association mapping using next-generation sequencing data (2011) (179)
The discovery of single-nucleotide polymorphisms--and inferences about human demographic history. (2001) (177)
Demographic Histories and Patterns of Linkage Disequilibrium in Chinese and Indian Rhesus Macaques (2007) (175)
Distinguishing between Selective Sweeps from Standing Variation and from a De Novo Mutation (2012) (172)
Speciation with gene flow in equids despite extensive chromosomal plasticity (2014) (172)
Genetic Signatures Reveal High-Altitude Adaptation in a Set of Ethiopian Populations (2013) (172)
Inference of Historical Changes in Migration Rate From the Lengths of Migrant Tracts (2009) (171)
Genomic Analyses from Non-invasive Prenatal Testing Reveal Genetic Associations, Patterns of Viral Infections, and Chinese Population History (2018) (170)
In defence of model‐based inference in phylogeography (2010) (170)
A Likelihood-Ratio Test of Monophyly (1996) (170)
Correcting for ascertainment biases when analyzing SNP data: applications to the estimation of linkage disequilibrium. (2003) (163)
Reconstituting the Frequency Spectrum of Ascertained Single-Nucleotide Polymorphism Data (2004) (161)
SweepFinder2: increased sensitivity, robustness and flexibility (2015) (160)
Estimating the distribution of selection coefficients from phylogenetic data with applications to mitochondrial and viral DNA. (2003) (159)
The Population Structure of African Cultivated Rice Oryza glaberrima (Steud.) (2004) (158)
Darwinian and demographic forces affecting human protein coding genes. (2009) (156)
Statistical approaches for DNA barcoding. (2006) (154)
A Model-Based Approach for Identifying Signatures of Ancient Balancing Selection in Genetic Data (2014) (147)
Estimation of 2Nes From Temporal Allele Frequency Data (2008) (146)
Natural Selection Affects Multiple Aspects of Genetic Variation at Putatively Neutral Sites across the Human Genome (2011) (145)
A scientific note on the revised estimates of effective paternity frequency in Apis (2004) (145)
Emergence and Spread of Basal Lineages of Yersinia pestis during the Neolithic Decline (2019) (140)
The population history of northeastern Siberia since the Pleistocene (2019) (138)
Statistical approaches to paternity analysis in natural populations and applications to the North Atlantic humpback whale. (2001) (136)
Bacterial natural transformation by highly fragmented and damaged DNA (2013) (135)
Whole-exome sequencing of 2,000 Danish individuals and the role of rare coding variants in type 2 diabetes. (2013) (134)
Pervasive introgression facilitated domestication and adaptation in the Bos species complex (2018) (133)
Population genetic analysis of ascertained SNP data (2004) (132)
Exome sequencing-driven discovery of coding polymorphisms associated with common metabolic phenotypes (2012) (129)
Exome sequencing-driven discovery of coding polymorphisms associated with common metabolic phenotypes (2012) (129)
Peptide YY and glucagon-like peptide-1 contribute to decreased food intake after Roux-en-Y gastric bypass surgery (2016) (128)
The origin and evolution of maize in the Southwestern United States (2015) (127)
An Introduction to Population Genetics: Theory and Applications (2013) (122)
Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments (2015) (122)
Rational Design of DNA Sequence-Based Strategies for Subtyping Listeria monocytogenes (2002) (121)
Neutrophil Gelatinase‐Associated Lipocalin (NGAL) and Kidney Injury Molecule 1 (KIM1) in patients with diabetic nephropathy: a cross‐sectional study and the effects of lisinopril (2010) (119)
Evolution of the integral membrane desaturase gene family in moths and flies. (2002) (119)
Genetic Architecture of Vitamin B12 and Folate Levels Uncovered Applying Deeply Sequenced Large Datasets (2013) (115)
Modeling gene expression evolution with an extended Ornstein-Uhlenbeck process accounting for within-species variation. (2014) (115)
Detecting Selection in Noncoding Regions of Nucleotide Sequences (2004) (109)
A likelihood approach to populations samples of microsatellite alleles. (1997) (107)
Urinary Liver-Type Fatty Acid-Binding Protein Predicts Progression to Nephropathy in Type 1 Diabetic Patients (2010) (107)
Using nuclear haplotypes with microsatellites to study gene flow between recently separated Cichlid species (2004) (107)
Physiological and Genetic Adaptations to Diving in Sea Nomads (2018) (107)
Genome-wide signatures of complex introgression and adaptive evolution in the big cats (2017) (106)
Natural selection on the Arabidopsis thaliana genome in present and future climates (2019) (104)
Detecting recent selective sweeps while controlling for mutation rate and background selection (2015) (103)
A likelihood ratio test for species membership based on DNA sequence data (2005) (101)
Relatedness mapping and tracts of relatedness for genome‐wide data in the presence of linkage disequilibrium (2009) (101)
The Lengths of Admixture Tracts (2014) (99)
Natural Selection and the Distribution of Identity-by-Descent in the Human Genome (2010) (99)
A conserved RNA structure element involved in the regulation of bacterial riboflavin synthesis genes (98)
A Selective Sweep on a Deleterious Mutation in CPT1A in Arctic Populations. (2014) (98)
Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals. (2008) (97)
Radiation and speciation of pelagic organisms during periods of global warming: the case of the common minke whale, Balaenoptera acutorostrata (2007) (97)
Parallel adaptation of rabbit populations to myxoma virus (2019) (97)
Tubular markers do not predict the decline in glomerular filtration rate in type 1 diabetic patients with overt nephropathy. (2011) (96)
An investigation of the statistical power of neutrality tests based on comparative and population genetic data. (2009) (95)
DISCERNING BETWEEN RECURRENT GENE FLOW AND RECENT DIVERGENCE UNDER A FINITE‐SITE MUTATION MODEL APPLIED TO NORTH ATLANTIC AND MEDITERRANEAN SEA FIN WHALE (BALAENOPTERA PHYSALUS) POPULATIONS (2004) (93)
The Evolutionary Pathway to Virulence of an RNA Virus (2017) (93)
Natural Selection Reduced Diversity on Human Y Chromosomes (2013) (92)
Archaic Adaptive Introgression in TBX15/WARS2 (2015) (92)
Design of association studies with pooled or un‐pooled next‐generation sequencing data (2010) (90)
Maximum likelihood estimation of ancestral codon usage bias parameters in Drosophila. (2006) (89)
Error-prone polymerase activity causes multinucleotide mutations in humans (2013) (87)
RTX toxin genotypes and phenotypes in Actinobacillus pleuropneumoniae field strains (1994) (87)
Tubular markers are associated with decline in kidney function in proteinuric type 2 diabetic patients. (2012) (86)
Linkage disequilibrium and inference of ancestral recombination in 538 single-nucleotide polymorphism clusters across the human genome. (2003) (86)
The population history of northeastern Siberia since the Pleistocene (2018) (85)
Asian wild rice is a hybrid swarm with extensive gene flow and feralization from domesticated rice. (2017) (82)
A Hidden Markov Model Approach for Simultaneously Estimating Local Ancestry and Admixture Time Using Next Generation Sequence Data in Samples of Arbitrary Ploidy (2016) (82)
The Power of Inbreeding: NGS-Based GWAS of Rice Reveals Convergent Evolution during Rice Domestication. (2016) (81)
Detecting Site-Specific Physicochemical Selective Pressures: Applications to the Class I HLA of the Human Major Histocompatibility Complex and the SRK of the Plant Sporophytic Self-Incompatibility System (2005) (81)
Estimating inbreeding coefficients from NGS data: Impact on genotype calling and allele frequency estimation (2013) (79)
Uncovering the Genetic History of the Present-Day Greenlandic Population (2014) (77)
Phylogenetic ANOVA: The Expression Variance and Evolution Model for Quantitative Trait Evolution. (2015) (77)
Fast phylogenetic DNA barcoding (2008) (76)
Population genomics of finless porpoises reveal an incipient cetacean species adapted to freshwater (2018) (74)
Spironolactone diminishes urinary albumin excretion in patients with type 1 diabetes and microalbuminuria: a randomized placebo‐controlled crossover study (2012) (73)
Synonymous mutations and the molecular evolution of SARS-CoV-2 origins (2020) (71)
Microsatellite Mutation Models (2004) (71)
The Genetic Basis of Adaptation following Plastic Changes in Coloration in a Novel Environment (2018) (69)
Natural Selection on Genes Related to Cardiovascular Health in High-Altitude Adapted Andeans. (2017) (69)
A maximum likelihood method for analyzing pseudogene evolution: implications for silent site evolution in humans and rodents. (2002) (68)
Selection in Europeans on Fatty Acid Desaturases Associated with Dietary Changes (2017) (68)
Human Disease Variation in the Light of Population Genomics (2019) (67)
An approximate full-likelihood method for inferring selection and allele frequency trajectories from DNA sequence data (2019) (67)
Tubular and Glomerular Injury in Diabetes and the Impact of ACE Inhibition (2009) (67)
Evidence for Positive Selection on a Number of MicroRNA Regulatory Interactions during Recent Human Evolution (2012) (66)
A saturated map of common genetic variants associated with human height (2022) (65)
De novo assembly of a haplotype-resolved human genome (2015) (65)
Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil (2014) (64)
A genome-wide scan for signatures of directional selection in domesticated pigs (2015) (63)
Detecting coevolving amino acid sites using Bayesian mutational mapping (2005) (63)
The PPARgamma2 polymorphism pro12Ala is associated with better insulin sensitivity in the offspring of type 2 diabetic patients. (2000) (62)
Bottleneck and selection in the germline and maternal age influence transmission of mitochondrial DNA in human pedigrees (2019) (62)
Suppression of systemic, intramuscular, and subcutaneous adipose tissue lipolysis by insulin in humans. (2000) (61)
Diabetic intestinal growth adaptation and glucagon-like peptide 2 in the rat: effects of dietary fibre (1999) (60)
MAXIMUM‐LIKELIHOOD ESTIMATION OF POPULATION DIVERGENCE TIMES AND POPULATION PHYLOGENY IN MODELS WITHOUT MUTATION (1998) (60)
Mapping mutations on phylogenies (2005) (59)
LIKELIHOOD ANALYSIS OF ONGOING GENE FLOW AND HISTORICAL ASSOCIATION (2000) (58)
Adaptive evolution of cytochrome c oxidase: Infrastructure for a carnivorous plant radiation (2004) (58)
The effect of ancient DNA damage on inferences of demographic histories. (2008) (58)
CCR5-Δ32 is deleterious in the homozygous state in humans (2019) (57)
Origins and genetic legacies of the Caribbean Taino (2018) (57)
Patterns of mutation and selection at synonymous sites in Drosophila. (2007) (56)
The age of nonsynonymous and synonymous mutations in animal mtDNA and implications for the mildly deleterious theory. (1999) (55)
Maximum likelihood estimation of population divergence times and population phylogenies under the infinite sites model. (1998) (53)
Lipolysis in skeletal muscle is rapidly regulated by low physiological doses of insulin (1999) (52)
A method for detecting IBD regions simultaneously in multiple individuals--with applications to disease genetics. (2011) (50)
Effect of nonindependent substitution on phylogenetic accuracy. (1999) (50)
Temporal genomic contrasts reveal rapid evolutionary responses in an alpine mammal during recent climate change (2019) (50)
Maximum likelihood and Bayesian methods for estimating the distribution of selective effects among classes of mutations using DNA polymorphism data. (2003) (49)
Costs and benefits of mutational robustness in RNA viruses. (2014) (48)
Genomic Takeover by Transposable Elements in the Strawberry Poison Frog (2014) (48)
Genome-wide Ancestry Patterns in Rapanui Suggest Pre-European Admixture with Native Americans (2014) (46)
Detecting Positively Selected Amino Acid Sites Using Posterior Predictive P-Values (2001) (44)
The impact of founder events on chromosomal variability in multiply mating species. (2008) (43)
In defense of statistical methods for detecting positive selection (2009) (41)
REPdenovo: Inferring De Novo Repeat Motifs from Short Sequence Reads (2016) (40)
VolcanoFinder: Genomic scans for adaptive introgression (2019) (40)
Correcting Estimators of θ and Tajima's D for Ascertainment Biases Caused by the Single-Nucleotide Polymorphism Discovery Process (2009) (40)
bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS) (2014) (40)
Assessing Uncertainty in the Rooting of the SARS-CoV-2 Phylogeny (2020) (40)
Positive selection on apoptosis related genes (2010) (40)
The history and evolution of the Denisovan-EPAS1 haplotype in Tibetans (2020) (39)
Segregation distortion in chicken and the evolutionary consequences of female meiotic drive in birds (2010) (39)
Clinical features and outcome in a Danish cohort of juvenile dermatomyositis patients. (2010) (37)
Human adaptation to extreme environmental conditions. (2018) (36)
Identification of physicochemical selective pressure on protein encoding nucleotide sequences (2006) (36)
Disentangling selection on genetically correlated polygenic traits via whole-genome genealogies. (2021) (34)
Ancient hybridization with an unknown population facilitated high altitude adaptation of canids. (2020) (34)
Genomics: In search of rare human variants (2010) (34)
Positive selection in the human genome inferred from human-chimp-mouse orthologous gene alignments. (2003) (34)
Looking for Darwin in genomic sequences--validity and success of statistical methods. (2012) (33)
Variation and association to diabetes in 2000 full mtDNA sequences mined from an exome study in a Danish population (2014) (33)
Variation in the Pattern of Nucleotide Substitution Across Sites (1999) (33)
A Population Phylogenetic View of Mitochondrial Heteroplasmy (2017) (33)
Reticulate Speciation and Barriers to Introgression in the Anopheles gambiae Species Complex (2015) (33)
Estimating IBD tracts from low coverage NGS data (2016) (32)
Site-by-site estimation of the rate of substitution and the correlation of rates in mitochondrial DNA. (1997) (32)
Estimating the Timing of Multiple Admixture Pulses During Local Ancestry Inference (2018) (30)
Bayesian Estimation of Genomic Distance (2004) (30)
Fast admixture analysis and population tree estimation for SNP and NGS data (2017) (29)
A draft genome sequence of the elusive giant squid, Architeuthis dux (2020) (28)
Single-locus tests of microsatellite evolution: multi-step mutations and constraints on allele size. (1999) (28)
Genetic rescue and the maintenance of native ancestry (2019) (27)
24-hour central aortic systolic pressure and 24-hour central pulse pressure are related to diabetic complications in type 1 diabetes – a cross-sectional study (2013) (27)
Authoritative subspecies diagnosis tool for European honey bees based on ancestry informative SNPs (2021) (27)
The genetic architecture of sporadic and multiple consecutive miscarriage (2020) (27)
Correction: Signatures of Environmental Genetic Adaptation Pinpoint Pathogens as the Main Selective Pressure through Human Evolution (2011) (26)
Mutations as missing data: inferences on the ages and distributions of nonsynonymous and synonymous mutations. (2001) (26)
PATRI-paternity inference using genetic data (2002) (26)
Detecting adaptive trait loci in nonmodel systems: divergence or admixture mapping? (2013) (25)
Bayesian Estimation of the Number of Inversions in the History of Two Chromosomes (2002) (25)
The ratio of replacement to silent divergence and tests of neutrality (1997) (25)
Levels of NT-proBNP, markers of low-grade inflammation, and endothelial dysfunction during spironolactone treatment in patients with diabetic kidney disease (2013) (24)
Genetic evaluation of the captive breeding program of the Persian wild ass (2007) (24)
Novel Method To Identify Source-Associated Phylogenetic Clustering Shows that Listeria monocytogenes Includes Niche-Adapted Clonal Groups with Distinct Ecological Preferences (2006) (23)
Effects of five different alcoholic drinks on patients with Crohn's disease (2007) (23)
Detecting Selection in Multiple Populations by Modeling Ancestral Admixture Components (2019) (23)
Acquired generalized lipoatrophy (AGL): Highly selective MR lipid imaging and localized 1H‐MRS (2000) (22)
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments (2005) (21)
Composite likelihood method for inferring local pedigrees (2017) (21)
Molecular Footprints of Aquatic Adaptation Including Bone Mass Changes in Cetaceans (2018) (21)
Detecting Natural Selection (2019) (21)
Reverend Bayes meets Darwin : Bayesian inference of phylogeny and its impact on evolutionary biology ( Supplemental Material ) (2001) (20)
Urinary Neutrophil Gelatinase-Associated Lipocalin and Progression of Diabetic Nephropathy in Type 1 Diabetic Patients in a Four-Year Follow-Up Study (2010) (20)
A Scan for Human-Specific Relaxation of Negative Selection Reveals Unexpected Polymorphism in Proteasome Genes (2013) (20)
Life in Deserts: The Genetic Basis of Mammalian Desert Adaptation. (2021) (19)
Estimating population divergence time and phylogeny from single‐nucleotide polymorphisms data with outgroup ascertainment bias (2012) (19)
On the Distribution of Tract Lengths During Adaptive Introgression (2019) (19)
The effect of RAAS blockade on markers of renal tubular damage in diabetic nephropathy: u-NGAL, u-KIM1 and u-LFABP (2012) (19)
Evolutionary genomics: Detecting selection needs comparative data (2005) (19)
A Bayesian Multilocus Association Method: Allowing for Higher-Order Interaction in Association Studies (2007) (19)
Exploring Variation in the dN/dS Ratio Among Sites and Lineages Using Mutational Mappings: Applications to the Influenza Virus (2007) (18)
Evolution of GOUNDRY, a cryptic subgroup of Anopheles gambiae s.l., and its impact on susceptibility to Plasmodium infection (2016) (17)
Why Sex? (2006) (17)
Pronounced somatic bottleneck in mitochondrial DNA of human hair (2019) (17)
Is haplotype block identification useful for association mapping studies? (2004) (16)
Dependence of paracentric inversion rate on tract length (2007) (16)
CpG + CpNpG analysis of protein-coding sequences from tomato. (2006) (16)
Understanding Admixture Fractions (2014) (15)
New policies may call for new approaches: the case of the Swedish Norway lobster (Nephrops norvegicus) fisheries in the Kattegat and Skagerrak (2017) (15)
No statistical evidence for an effect of CCR5-∆32 on lifespan in the UK Biobank cohort (2019) (15)
Robustness of the estimator of the index of dispersion for DNA sequences. (1997) (15)
Population Genomics of Stone Age Eurasia (2022) (15)
Passage adaptation correlates with the reduced efficacy of the influenza vaccine. (2019) (15)
Changes in ds/dn in the HIV-1 env gene. (1999) (15)
Number of genes controlling a quantitative trait in a hybrid zone of the aposematic frog Ranitomeya imitator (2015) (14)
Author Correction: 137 ancient human genomes from across the Eurasian steppes (2018) (14)
The CALeDNA program: Citizen scientists and researchers inventory California's biodiversity (2021) (13)
Inferring Adaptive Introgression Using Hidden Markov Models (2020) (13)
The California environmental DNA “CALeDNA” program (2019) (13)
Finding cis-regulatory modules in Drosophila using phylogenetic hidden Markov models (2007) (13)
On the number of siblings and p-th cousins in a large population sample (2017) (11)
No association between vitamin D levels around time of birth and later risk of developing oligo- and polyarticular juvenile idiopathic arthritis: a Danish case–cohort study (2017) (11)
The origin and evolution of maize in the American Southwest (2015) (11)
Disentangling selection on genetically correlated polygenic traits using whole-genome genealogies (2020) (11)
A likelihood method for estimating present-day human contamination in ancient male samples using low-depth X-chromosome data (2019) (10)
Whole-genome sequence analysis unveils different origins of European and Asiatic mouflon and domestication-related genes in sheep (2021) (10)
Phenotypic convergence is not mirrored at the protein level in a lizard adaptive radiation. (2020) (10)
The genomics of mimicry: Gene expression throughout development provides insights into convergent and divergent phenotypes in a Müllerian mimicry system (2019) (10)
Comparative genomics: Difference of expression (2006) (10)
A map of climate change-driven natural selection in Arabidopsis thaliana (2018) (10)
Regulation of motilin release from isolated perfused pig duodenum. (1996) (9)
polymorphism Ascertainment bias in studies of human genome-wide data (2005) (9)
A selective sweep on a deleterious mutation in the CPT1A gene in Arctic populations (2014) (9)
Urinary liver-type fatty acid-binding protein (u-LFABP) predicts progression to nephropathy in type 1 diabetic patients. Running title: The tubular marker u-LFABP in type 1 diabetes (2010) (8)
Q&A: Who is H. sapiens really, and how do we know? (2011) (8)
Retraction Note: CCR5-∆32 is deleterious in the homozygous state in humans (2019) (7)
Phylogenetic ANOVA: The Expression Variance and Evolution (EVE) model for quantitative trait evolution (2015) (7)
Inferring the ancestry of parents and grandparents from genetic data (2018) (7)
Divergence, gene flow, and the origin of leapfrog geographic distributions: The history of colour pattern variation in Phyllobates poison‐dart frogs (2020) (7)
Vasoactive Intestinal Peptide Tumor (2009) (7)
A Bayesian Framework for Inferring the Influence of Sequence Context on Point Mutations (2019) (6)
Opening of the Norway pout box: will it change the ecological impacts of the North Sea Norway pout fishery? (2018) (6)
Orlistat (Xenical®) improves insulin sensitivity (IS) in obese intentionally weight maintaining subjects (2000) (6)
Population Structure and Diversity in European Honey Bees (Apis mellifera L.)—An Empirical Comparison of Pool and Individual Whole-Genome Sequencing (2022) (6)
The genetic architecture of phenotypic diversity in the Betta fish (Betta splendens) (2021) (6)
A multi-layer functional genomic analysis to understand noncoding genetic variation in lipids (2021) (6)
Erratum: The origin and evolution of maize in the Southwestern United States (2015) (6)
Mechanisms of change in human behaviour (2014) (6)
Archaeology Augments Tibet's Genetic History--Response (2010) (6)
SCONCE: A method for profiling Copy Number Alterations in Cancer Evolution using Single Cell Whole Genome Sequencing (2021) (5)
Detection of genetic variation affecting milk coagulation properties in Danish Holstein dairy cattle by analyses of pooled whole-genome sequences from phenotypically extreme samples (pool-seq). (2016) (5)
The distribution of waiting distances in ancestral recombination graphs. (2021) (5)
Human-Mediated Admixture and Selection Shape the Diversity on the Modern Swine (Sus scrofa) Y Chromosomes (2021) (5)
Ohana, a tool set for population genetic analyses of admixture components (2016) (5)
Bayesian and maximum likelihood estimation of genetic maps. (2005) (5)
A model-based approach for identifying signatures of balancing selection in genetic data (2013) (4)
Estimating the timing of multiple admixture events using 3-locus linkage disequilibrium (2016) (4)
Estimating the history of mutations on a phylogeny (2007) (4)
REDUCING AN INTELLECTUAL DEFICIT: COALESCENT THEORY FOR (ALMOST) EVERYONE1 (2006) (4)
The distribution of waiting distances in ancestral recombination graphs and its applications (2020) (4)
Human genomics: Disclosure of variation (2005) (4)
Convergent evolution of increased urine concentrating ability in desert mammals (2020) (4)
Reticulate speciation and adaptive introgression in the Anopheles gambiae species complex (2014) (4)
GIP affects hepatic fat and brown adipose tissue thermogenesis, but not white adipose tissue transcriptome in T1D. (2022) (3)
Joint Estimation of Pedigrees and Effective Population Size Using Markov Chain Monte Carlo. (2019) (3)
AncestralClust: Clustering of Divergent Nucleotide Sequences by Ancestral Sequence Reconstruction using Phylogenetic Trees (2021) (3)
The Selection Landscape and Genetic Legacy of Ancient Eurasians (2022) (3)
Evaluation of methods for estimating coalescence times using ancestral recombination graphs (2021) (3)
DISCERNING BETWEEN RECURRENT GENE FLOW AND RECENT DIVERGENCE UNDER A FINITE-SITE MUTATION MODEL APPLIED TO NORTH ATLANTIC AND MEDITERRANEAN SEA FIN WHALE (BALAENOPTERA PHYSALUS) POPULATIONS (2004) (3)
Ascertainment bias in studies of human genome-wide Material Supplemental (2005) (3)
Non-additive polygenic models improve predictions of fitness traits in three eukaryote model species (2020) (3)
Q&A: Where did the Neanderthals go? (2017) (3)
Estimating the relative proportions of SARS-CoV-2 strains from wastewater samples (2022) (3)
Divergence, gene flow and the origin of leapfrog geographic distributions: The history of color pattern variation in Phyllobates poison-dart frogs (2020) (2)
The molecular clock is gone but not forgotten: What about Molecular Clocks? Symposium at the Annual Meeting of the Society for the Study of Evolution (SSE), Madison, Wisconsin, USA, 22–26 June 1999 (1999) (2)
and the Role of Rare Coding Variants in Type 2 Diabetes (2013) (2)
Fitting the Balding-Nichols model to forensic databases. (2015) (2)
Deviations from Hardy Weinberg Equilibrium at CCR5-Δ32 in Large Sequencing Data Sets (2019) (2)
Estimating the distribution of selection coefficients from phylogenetic data with applications to mtDNA (2003) (2)
Erratum: Author Correction: 137 ancient human genomes from across the Eurasian steppes (Nature (2018) 557 7705 (369-374)) (2018) (2)
Erratum: Author Correction: 137 ancient human genomes from across the Eurasian steppes (Nature (2018) 557 7705 (369-374)) (2018) (2)
Identifying adaptive and plastic gene expression levels using a unified model for expression variance between and within species (2014) (2)
Bayesian inference of admixture graphs on Native American and Arctic populations (2022) (2)
Inferring person-to-person networks of pathogen transmission: is routine surveillance data up to the task? (2020) (2)
The genetic architecture of sporadic and recurrent miscarriage (2019) (2)
Studies of association of AGPAT6 variants with type 2 diabetes and related metabolic phenotypes in 12,068 Danes (2013) (2)
The effect of 6-day subcutaneous glucose-dependent insulinotropic polypeptide infusion on time in glycaemic range in patients with type 1 diabetes: a randomised, double-blind, placebo-controlled crossover trial (2021) (2)
Publisher Correction: Natural selection on the Arabidopsis thaliana genome in present and future climates (2019) (2)
107-OR: Six-Day Subcutaneous GIP Infusion Increases Circulating Free Fatty Acids without Altering the Adipose Tissue Transcriptome, Adipocyte GIP Receptor Levels, or Circulating Inflammation Markers in Patients with Type 1 Diabetes (2021) (2)
Composite likelihood estimation applied to Single Nucleotide Polymorphism ( SNP ) data (2005) (2)
Low pass genomes of 141,431 Chinese reveal patterns of viral infection, novel phenotypic associations, and the genetic history of China (2019) (2)
Population Genomics of Variegated Toad-Headed Lizard Phrynocephalus versicolor and Its Adaptation to the Colorful Sand of the Gobi Desert (2022) (2)
Identifying rare genetic variants of milk genes (2009) (1)
Joint Estimation of Pedigrees and Effective Population Size Using Markov Chain Monte Carlo (2019) (1)
Demography: Peopling the Americas (2005) (1)
Covariance of pairwise differences on a multi-species coalescent tree and implications for FST (2022) (1)
Selection on the FADS region in Europeans (2016) (1)
Glucose-dependent insulinotropic polypeptide (GIP) induces lipolysis during stable basal insulin substitution and hyperglycemia in men with type 1 diabetes: a randomized, double-blind, placebo-controlled, crossover clinical trial. (2021) (1)
A Computational Analysis of Human Genetic Variation Highlights Signatures of Natural Selection in the Human Genome (2010) (1)
THU0229 Is There A Difference in The Presentation of Diffuse and Limited Subtype in Childhood? Results from The Juvenile Scleroderma Inception Cohort (2016) (1)
Patterns of positive selection on the mammalian tree Supplementary Material (2008) (1)
Special Session: Coupled Economic-Ecological Models for Ecosystem-Based Fishery Management: Exploration of Trade-offs Between Model Complexity and Management Needs (2012) (1)
Recognizing the unconscious (2014) (1)
SCONCE: a method for profiling copy number alterations in cancer evolution using single-cell whole genome sequencing (2022) (1)
Evolution of the genetic architecture of local adaptations under genetic rescue is determined by mutational load and polygenicity (2020) (1)
Estimating population split times and migration rates from historical effective population sizes (2022) (1)
SAT0502 High Participation in School and Physical Education in Children in a Nordic Juvenile Idiopathic Arthritis Cohort (2015) (1)
PReS-FINAL-2334: Chronic recurrent multifocal osteomyelitis and tnf-αlfa inhibitors (2013) (1)
Purifying Selection: Action on Silent Sites (2007) (1)
Erratum: Whole-exome sequencing of 2,000 Danish individuals and the role of rare coding variants in type 2 diabetes (The American Journal of Human Genetics (2013) 93 (1072-1086)) (2014) (1)
8.3 Disease patterns in Danish Juvenile Dermatomyositis patients (2008) (1)
Inferring person-to-person networks of Plasmodium falciparum transmission: are analyses of routine surveillance data up to the task? (2022) (1)
Adaptation to High Altitude Sequencing of 50 Human Exomes Reveals (2010) (1)
67 FIRST EVER 24-HOUR CENTRAL BLOOD PRESSURE IN PATIENTS WITH TYPE 1 DIABETES (2012) (1)
JIA affected sibling pairs present high correlation for ANA and ILAR category (2011) (1)
A likelihood method for estimating present-day human contamination in ancient DNA samples using low-depth haploid chromosome data (2019) (1)
The Rowland Universal Dementia Assessment Scale (RUDAS) in an Arabic speaking population with limited schooling (2013) (1)
Glucose‐dependent insulinotropic polypeptide induces lipolysis during stable basal insulin substitution and hyperglycaemia in men with type 1 diabetes: A randomized, double‐blind, placebo‐controlled, crossover clinical trial (2022) (1)
Association Mapping for Compound Heterozygous Traits Using Phenotypic Distance and Integer Programming (2015) (1)
Demián Cazalla Noncoding RNA Herpesvirus saimiri Down-Regulation of a Host MicroRNA by a (2010) (0)
Potential impacts of abiotic and biotic parameters on stock-recruitment and distribution : comparative study of North Sea and Baltic Sea assessed stocks (2013) (0)
AnAutosomalAnalysisGivesNoGeneticEvidence forComplex Speciation of Humans and Chimpanzees (2012) (0)
Q U E S T I O N & A N S W E R Open Access (2011) (0)
High altitude adaptation and adaptive introgression in humans (2015) (0)
Author Correction: Population genomics of the Viking world (2021) (0)
Fitting the Balding-Nichols model to forensic databases (2014) (0)
Population genomics of finless porpoises reveal an incipient cetacean species adapted to freshwater (2018) (0)
Adaptive maintenance of ancient alleles: likelihood approaches for detecting balancing selection (2016) (0)
Qingyou Xia ) Bombyx Events and Genes in Silkworm ( Complete Resequencing of 40 Genomes Reveals Domestication (2011) (0)
The origin of Aboriginal Australians as inferred from the genomic sequence of a hundred-year-old lock of hair (2011) (0)
Integrating economics into fisheries science and advice: progress, needs, and future opportunities (2023) (0)
Correction for Johnson et al., Ancient bacteria show evidence of DNA repair (2008) (0)
A Bayesian framework for inferring the influence of sequence context on single base modifications (2019) (0)
Response to: ”Ancient Yersinia pestis genomes provide no evidence for the origins or spread of the Justinianic Plague” (2019) (0)
DB120348 3304..3313 (2012) (0)
Genomics and the Biological Concept of Race (2015) (0)
First ever 24-hour central blood pressure in patients with type 1 diabetes (2012) (0)
Polar Bears Genomics and Its Association with Cardiomyopathy and Vascular Disease (2015) (0)
Joint Estimation of Pedigrees and Effective Population Size Using Markov Chain Monte Carlo (2018) (0)
Improved MCMC Methods for Some Population Genetic Models (2000) (0)
Abstract 2173: Robust estimation of mutation burden (2015) (0)
SS3.01: SYstematic Memory screening Beholding Other Languages, SYMBOL – Final results and a comparison with Denmark and Turkey (2014) (0)
COAL_PHYRE: A Composite Likelihood Method for Estimating Species Tree Parameters from Genomic Data Using Coalescent Theory (2020) (0)
Bone mineral density, kidney function and arterial stiffness in long-standing type 1 diabetic patients with or without diabetic nephropathy (2012) (0)
Human-Chimp-Mouse Orthologous Gene Trios Inferring Nonneutral Evolution (2009) (0)
sequences from multiple individuals Population genetic analysis of shotgun assemblies of genomic Material Supplemental (2008) (0)
Benthis. Final Report (2017) (0)
A Likelihood-Ratio Test of Monophyly Author ( s ) : (2010) (0)
Bay es Empir i cal Bay es Infer ence of Amino A c i d S i t es under P os i t i ve S ele c t i on (2005) (0)
distAngsd: Fast and Accurate Inference of Genetic Distances for Next-Generation Sequencing Data (2022) (0)
Inferring person-to-person networks of Plasmodium falciparum transmission: are analyses of routine surveillance data up to the task? (2022) (0)
Ancient bacteria show evidence of DNA repair (vol 104, pg 14401, 2007) (2008) (0)
648-P: Glucose-Dependent Insulinotropic Polypeptide (GIP) Induces Lipolysis during Stable Basal Insulin Substitution and Hyperglycemia in Men with Type 1 Diabetes (2021) (0)
351-OR: Six-Day Subcutaneous GIP Infusion Increases Glycemic Time-in-Range in Patients with Type 1 Diabetes (2020) (0)
Toll-like receptor 2 polymorphism in juvenile dermatomyositis (2011) (0)
Incidence and classification of childhood vasculitides in Denmark 1976–1998 according to the consensus criteria for the classification of childhood vasculitides (2008) (0)
Society of Systematic Biologists Stochastic Mapping of Morphological Characters (2003) (0)
1 Talks 1 Quantifying The Bias In Disease Risk Estimates Associated With A Deleterious Mutation Using Families Ascertained Through One Affected Individual (2006) (0)
THU0507 Self-Reported Pain 6 Months After Onset of Juvenile Idiopathic Arthritis is Related to Pain Score and Disease Outcome After 8 Years (2015) (0)
Mouse Orthologous Gene Alignments − Chimp − Positive Selection in the Human Genome Inferred from Human (0)
PReS-FINAL-2016: Bone mineral status in a long-term follow up of juvenile dermatomyositis patients (2013) (0)
Fumio Tajima and the Origin of Modern Population Genetics (2016) (0)
OP0173 HLA-B27 and classification of enthesitis-related arthritis in an eight year follow up study of nordic patients with juvenile idiopathic arthritis (2013) (0)
Detecting Selection in Protein Coding Genes Using the Rate of Nonsynonymous and Synonymous Divergence (2002) (0)
Plasma TNF‐Binding Capacity and Soluble TNF Receptors in Patients with Juvenile Idiopathic Arthritis (2004) (0)
Evolution (EVE) model for quantitative trait evolution (2015) (0)
Revised SOM 06.24.2015 (2015) (0)
AB0997 Children with Psoriasis and Arthritis – an Important Clinical and Prognostic Issue That Challenges the Ilar-Classification (2015) (0)
PReS-FINAL-2063: Proposed criteria for activity, damage and impact of juvenile idiopathic arthritis associated uveitis: consensus effort from the multinational interdisciplinary working group for uveitis in childhood (MIWGUC) (2013) (0)
discovery using Next Generation Sequencing in Atlantic herring (Clupea harengus). (2012) (0)
A genome-wide scan for signatures of directional selection in domesticated pigs (2015) (0)
Genetic rescue and the maintenance of native ancestry (2019) (0)
Authoritative subspecies diagnosis tool for European honey bees based on ancestry informative SNPs (2021) (0)
Abstracts from the 52nd European Society of Human Genetics (ESHG) Conference: Oral Presentations (2019) (0)
Estimating the relative proportions of SARS-CoV-2 haplotypes from wastewater samples (2022) (0)
Insights from the largest genetic study of sporadic and recurrent miscarriage (2019) (0)
SCONCE2: jointly inferring single cell copy number profiles and tumor evolutionary distances (2022) (0)
A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets (2022) (0)
On the number of siblings and p-th cousins in a large population sample (2018) (0)
genomesDrosophilaAdaptive genic evolution in the (2007) (0)
Genetic basis of aposematic coloration in a mimetic radiation of poison frogs (2023) (0)
Predicting Egg Passage Adaptations to Design Better Vaccines for the H3N2 Influenza Virus (2022) (0)
SCONCE2: jointly inferring single cell copy number profiles and tumor evolutionary distances (2022) (0)
Calculation of Tajima’s D and other neutrality test statistics from low depth next-generation sequencing data (2013) (0)
comparative and population genetic data (2008) (0)
Society of Systematic Biologists Effect of Nonindependent Substitution on Phylogenetic Accuracy (2010) (0)
Report on technological innovations and management scenario’s to mitigate fishing impacts on the benthic ecosystem and their socio-economic consequences in regional seas (2016) (0)
SEA FIN WHALE (BALAENOPTERA PHYSALUS) POPULATIONS (2004) (0)
Fishing Sea-bed Habitat Risk Assessment (A framework towards the quantitative assessment of trawling impact on the sea-bed and benthic ecosystem) (2015) (0)
sequence data A likelihood ratio test for species membership based on DNA (2008) (0)
The unfolded site frequency spectrum from 25 Danish indivuduals. (2012) (0)
Potential impacts of abiotic and biotic parameters on stock-recruitment and distribution : comparative study of North Sea and Baltic Sea assessed stocks (2013) (0)

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