Richard M. Durbin

Richard M. Durbin's AcademicInfluence.com Rankings

Richard M. Durbin

Computer Science

#1341

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#1386

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Database

#55

World Rank

#57

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computer-science Degrees

Richard M. Durbin

Biology

#862

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#1500

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Computational Biology

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biology Degrees

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Computer Science
Biology

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According to Wikipedia, Richard Michael Durbin is a British computational biologist and Al-Kindi Professor of Genetics at the University of Cambridge. He also serves as an associate faculty member at the Wellcome Sanger Institute where he was previously a senior group leader.

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Richard M. Durbin's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

The Sequence Alignment/Map format and SAMtools (2009) (42331)
Fast and accurate short read alignment with Burrows–Wheeler transform (2009) (38298)
Initial sequencing and analysis of the human genome. (2001) (15222)
A global reference for human genetic variation (2015) (11857)
The variant call format and VCFtools (2011) (9013)
Fast and accurate long-read alignment with Burrows–Wheeler transform (2010) (8366)
An integrated map of genetic variation from 1,092 human genomes (2012) (7565)
A map of human genome variation from population-scale sequencing (2010) (6496)
Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids (1998) (4580)
Accurate Whole Human Genome Sequencing using Reversible Terminator Chemistry (2008) (3580)
Systematic functional analysis of the Caenorhabditis elegans genome using RNAi (2003) (3497)
Mapping short DNA sequencing reads and calling variants using mapping quality scores. (2008) (2894)
The Pfam protein families database (2004) (2565)
Pfam: clans, web tools and services (2005) (2262)
Genome sequence of the Brown Norway rat yields insights into mammalian evolution (2004) (2053)
GeneWise and Genomewise. (2004) (1930)
Inference of human population history from individual whole-genome sequences. (2011) (1636)
The Ensembl genome database project (2002) (1559)
2.2 Mb of contiguous nucleotide sequence from chromosome III of C. elegans (1994) (1449)
Population genomics of domestic and wild yeasts (2008) (1405)
Mouse genomic variation and its effect on phenotypes and gene regulation (2011) (1398)
Pfam: A comprehensive database of protein domain families based on seed alignments (1997) (1221)
The DNA sequence of human chromosome 22 (1999) (1117)
EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates. (2009) (1099)
Reference-based phasing using the Haplotype Reference Consortium panel (2016) (1082)
The DNA sequence of the human X chromosome (2005) (1072)
The InterPro database, an integrated documentation resource for protein families, domains and functional sites (2001) (1061)
The diploid genome sequence of an Asian individual (2008) (977)
The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics (2003) (972)
The UK10K project identifies rare variants in health and disease (2015) (926)
Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing (2008) (879)
RNA sequence analysis using covariance models. (1994) (851)
Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes (2010) (811)
Inferring human population size and separation history from multiple genome sequences (2014) (801)
The Sequence Ontology: a tool for the unification of genome annotations (2005) (788)
Pfam: multiple sequence alignments and HMM-profiles of protein domains (1998) (784)
A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis. (1995) (772)
Efficient de novo assembly of large genomes using compressed data structures. (2012) (769)
Mapping cis- and trans-regulatory effects across multiple tissues in twins (2012) (754)
The InterPro Database, 2003 brings increased coverage and new features (2003) (742)
A large genome center's improvements to the Illumina sequencing system (2008) (722)
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species (2013) (702)
Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses (2012) (688)
Insights into hominid evolution from the gorilla genome sequence (2012) (670)
Ensembl 2012 (2011) (648)
A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis (2008) (647)
WormBase: a multi-species resource for nematode biology and genomics (2004) (644)
The complete sequence of a human genome (2021) (622)
BAC TransgeneOmics: a high-throughput method for exploration of protein function in mammals (2008) (619)
Ensembl 2009 (2008) (575)
InterPro, progress and status in 2005 (2004) (573)
The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes. (2009) (569)
Towards complete and error-free genome assemblies of all vertebrate species (2020) (557)
Ensembl 2007 (2006) (553)
DNA sequence and analysis of human chromosome 9 (2003) (548)
Assemblathon 1: a competitive assessment of de novo short read assembly methods. (2011) (542)
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly. (2017) (541)
Identifying and removing haplotypic duplication in primary genome assemblies (2019) (538)
Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform (2009) (535)
Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins (1999) (532)
Systematic Analysis of Human Protein Complexes Identifies Chromosome Segregation Proteins (2010) (493)
Earth BioGenome Project: Sequencing life for the future of life (2018) (492)
Ensembl 2011 (2010) (482)
Revising the human mutation rate: implications for understanding human evolution (2012) (478)
Patterns of Cis Regulatory Variation in Diverse Human Populations (2012) (470)
The C. elegans genome sequencing project: a beginning (1992) (462)
An overview of Ensembl. (2004) (462)
The Architecture of Gene Regulatory Variation across Multiple Human Tissues: The MuTHER Study (2011) (460)
Product Units: A Computationally Powerful and Biologically Plausible Extension to Backpropagation Networks (1989) (453)
Dindel: accurate indel calls from short-read data. (2011) (450)
A dimension reduction framework for understanding cortical maps (1990) (444)
A Bayesian Framework to Account for Complex Non-Genetic Factors in Gene Expression Levels Greatly Increases Power in eQTL Studies (2010) (428)
Genomic evidence for the Pleistocene and recent population history of Native Americans (2015) (428)
TreeFam: a curated database of phylogenetic trees of animal gene families (2005) (406)
Whole‐genome sequencing identifies EN1 as a determinant of bone density and fracture (2015) (399)
Common genetic variation drives molecular heterogeneity in human iPSCs (2017) (397)
BCFtools/RoH: a hidden Markov model approach for detecting autozygosity from next-generation sequencing data (2016) (396)
Inference of Human Population History From Whole Genome Sequence of A Single Individual (2011) (396)
Using GeneWise in the Drosophila annotation experiment. (2000) (384)
WormBase: a comprehensive resource for nematode research (2009) (383)
InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites (2002) (376)
Ensembl 2008 (2007) (362)
Insights into human genetic variation and population history from 929 diverse genomes (2019) (356)
A genomic history of Aboriginal Australia (2016) (355)
Backpropagation: the basic theory (1995) (352)
WormBase: network access to the genome and biology of Caenorhabditis elegans (2001) (350)
Distribution and Medical Impact of Loss-of-Function Variants in the Finnish Founder Population (2014) (348)
Variation graph toolkit improves read mapping by representing genetic variation in the reference (2018) (338)
A survey of expressed genes in Caenorhabditis elegans (1992) (336)
Efficient haplotype matching and storage using the positional Burrows–Wheeler transform (PBWT) (2014) (333)
Ensembl’s 10th year (2009) (321)
TreeFam: 2008 Update (2007) (302)
QuickTree: building huge Neighbour-Joining trees of protein sequences (2002) (298)
Trait Variation in Yeast Is Defined by Population History (2011) (297)
Improved imputation of low-frequency and rare variants using the UK10K haplotype reference panel (2015) (296)
The computing neuron (1989) (294)
Genomic islands of speciation separate cichlid ecomorphs in an East African crater lake (2015) (294)
The DNA sequence and comparative analysis of human chromosome 20 (2004) (280)
Maximum Discrimination Hidden Markov Models of Sequence Consensus (1995) (278)
Did Our Species Evolve in Subdivided Populations across Africa, and Why Does It Matter? (2018) (276)
Ensembl 2005 (2004) (274)
Structure and expression of the Huntington's disease gene: Evidence against simple inactivation due to an expanded CAG repeat (1994) (269)
The DNA sequence and analysis of human chromosome 6 (2003) (266)
Whole-genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow (2018) (263)
A High-Definition View of Functional Genetic Variation from Natural Yeast Genomes (2014) (258)
Ensembl 2002: accommodating comparative genomics (2003) (257)
Efficient construction of an assembly string graph using the FM-index (2010) (256)
Ensembl 2006 (2005) (255)
The first horse herders and the impact of early Bronze Age steppe expansions into Asia (2018) (243)
Health and population effects of rare gene knockouts in adult humans with related parents (2015) (242)
Contrasting evolutionary genome dynamics between domesticated and wild yeasts (2017) (242)
Revealing the genetic structure of a trait by sequencing a population under selection. (2011) (240)
Gene expression changes with age in skin, adipose tissue, blood and brain (2013) (237)
Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs. (1999) (212)
WormBase: a comprehensive data resource for Caenorhabditis biology and genomics (2004) (209)
The Pfam protein families database. (2004) (204)
WormBase 2012: more genomes, more data, new website (2011) (198)
Prepublication data sharing (2009) (190)
An organelle-specific protein landscape identifies novel diseases and molecular mechanisms (2016) (189)
Gene-gene and gene-environment interactions detected by transcriptome sequence analysis in twins (2014) (183)
A federated ecosystem for sharing genomic, clinical data (2016) (177)
Biological sequence analysis: Background on probability (1998) (172)
The DNA sequence and biological annotation of human chromosome 1 (2006) (166)
The Pfam Protein Families Database (2002) (166)
Deficient methylation and formylation of mt-tRNAMet wobble cytosine in a patient carrying mutations in NSUN3 (2016) (159)
A computational scan for U12-dependent introns in the human genome sequence. (2001) (157)
High levels of RNA-editing site conservation amongst 15 laboratory mouse strains (2012) (157)
InterPro--an integrated documentation resource for protein families, domains and functional sites. (2000) (157)
The genomic and phenotypic diversity of Schizosaccharomyces pombe (2015) (152)
SNP detection and genotyping from low-coverage sequencing data on multiple diploid samples. (2011) (148)
Dynamic programming alignment accuracy (1998) (144)
Iron Age and Anglo-Saxon genomes from East England reveal British migration history (2015) (144)
Comparative ab initio prediction of gene structures using pair HMMs (2002) (141)
Analysis of protein domain families in Caenorhabditis elegans. (1997) (141)
Software for genome mapping by fingerprinting techniques (1988) (139)
Tracing the Route of Modern Humans out of Africa by Using 225 Human Genome Sequences from Ethiopians and Egyptians (2015) (138)
The population history of northeastern Siberia since the Pleistocene (2019) (138)
Extending reference assembly models (2015) (138)
Souporcell: robust clustering of single-cell RNA-seq data by genotype without reference genotypes (2020) (134)
Differential methylation of the TRPA1 promoter in pain sensitivity (2014) (133)
Corrigendum: TCTEX1D2 mutations underlie Jeune asphyxiating thoracic dystrophy with impaired retrograde intraflagellar transport (2016) (131)
Comparative sequence analysis of the human and pufferfish Huntington's disease genes (1995) (130)
Dynamite: A Flexible Code Generating Language for Dynamic Programming Methods Used in Sequence Comparison (1997) (130)
WormBase: a cross-species database for comparative genomics (2003) (129)
A workbench for large-scale sequence homology analysis (1994) (129)
Estimating telomere length from whole genome sequence data (2014) (129)
De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms (2017) (127)
The DNA sequence and biological annotation of human chromosome 1 (2006) (127)
Ensembl 2004 (2004) (123)
Sixteen diverse laboratory mouse reference genomes define strain specific haplotypes and novel functional loci (2018) (122)
Genetic interactions affecting human gene expression identified by variance association mapping (2014) (122)
Mapping trait loci by use of inferred ancestral recombination graphs. (2006) (120)
Optimal numberings of an N N array (1986) (118)
X-linked primary ciliary dyskinesia due to mutations in the cytoplasmic axonemal dynein assembly factor PIH1D3 (2017) (117)
High-Resolution Mapping of Complex Traits with a Four-Parent Advanced Intercross Yeast Population (2013) (116)
Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits (2017) (110)
GAZE: a generic framework for the integration of gene-prediction data by dynamic programming. (2002) (108)
Erratum: Initial sequencing and analysis of the human genome: International Human Genome Sequencing Consortium (Nature (2001) 409 (860-921)) (2001) (106)
WormBase: new content and better access (2006) (102)
YaHS: yet another Hi-C scaffolding tool (2022) (101)
Biological sequence analysis: Preface (1998) (100)
WormBase: better software, richer content (2005) (100)
Image analysis of restriction enzyme fingerprint autoradiograms (1989) (97)
Gene structure conservation aids similarity based gene prediction. (2004) (95)
A High-Quality De novo Genome Assembly from a Single Mosquito Using PacBio Sequencing (2018) (93)
Clustering of phosphorylation site recognition motifs can be exploited to predict the targets of cyclin-dependent kinase (2007) (92)
MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio High Fidelity reads (2023) (90)
Whole-genome sequence-based analysis of thyroid function (2015) (89)
DNAH11 Localization in the Proximal Region of Respiratory Cilia Defines Distinct Outer Dynein Arm Complexes. (2016) (88)
Transposon Tc1-derived, sequence-tagged sites in Caenorhabditis elegans as markers for gene mapping. (1996) (87)
Deficiency of ECHS1 causes mitochondrial encephalopathy with cardiac involvement (2015) (86)
The population history of northeastern Siberia since the Pleistocene (2018) (85)
ACeDB and macace. (1995) (79)
Efficiently inferring the demographic history of many populations with allele count data (2018) (78)
TTC25 Deficiency Results in Defects of the Outer Dynein Arm Docking Machinery and Primary Ciliary Dyskinesia with Left-Right Body Asymmetry Randomization. (2016) (77)
Joint Genetic Analysis of Gene Expression Data with Inferred Cellular Phenotypes (2011) (76)
The DNA sequence and analysis of human chromosome 13 (2004) (75)
A systematic comparative and structural analysis of protein phosphorylation sites based on the mtcPTM database (2007) (75)
The Pfam protein families database (2007) (72)
Estimating the human mutation rate from autozygous segments reveals population differences in human mutational processes (2017) (72)
Regulatory evolution in proteins by turnover and lineage-specific changes of cyclin-dependent kinase consensus sites (2007) (71)
A rare variant in APOC3 is associated with plasma triglyceride and VLDL levels in Europeans (2014) (69)
A rare variant in APOC3 is associated with plasma triglyceride and VLDL levels in Europeans (2014) (69)
Bi-allelic Truncating Mutations in TANGO2 Cause Infancy-Onset Recurrent Metabolic Crises with Encephalocardiomyopathy. (2016) (67)
No evidence for maintenance of a sympatric Heliconius species barrier by chromosomal inversions (2017) (66)
Characterization of functional methylomes by next-generation capture sequencing identifies novel disease-associated variants (2015) (66)
Enhanced protein domain discovery by using language modeling techniques from speech recognition (2003) (65)
The DNA sequence and comparative analysis of human chromosome 10 (2004) (65)
The ACEDB genome database (1994) (62)
Ancestral Hybridization Facilitated Species Diversification in the Lake Malawi Cichlid Fish Adaptive Radiation (2019) (61)
Whole-genome view of the consequences of a population bottleneck using 2926 genome sequences from Finland and United Kingdom (2016) (61)
Detecting archaic introgression using an unadmixed outgroup (2018) (59)
Haplotype-aware graph indexes (2018) (58)
The Earth BioGenome Project 2020: Starting the clock (2022) (58)
Enrichment of low-frequency functional variants revealed by whole-genome sequencing of multiple isolated European populations (2017) (57)
A probabilistic model of 3' end formation in Caenorhabditis elegans. (2004) (57)
Quantitative Genetics of CTCF Binding Reveal Local Sequence Effects and Different Modes of X-Chromosome Association (2014) (56)
The physical maps for sequencing human chromosomes 1, 6, 9, 10, 13, 20 and X (2001) (54)
Alfresco--a workbench for comparative genomic sequence analysis. (2000) (54)
WormBase (2012) (54)
Copy number variant detection in inbred strains from short read sequence data (2009) (52)
Immunofluorescence Analysis and Diagnosis of Primary Ciliary Dyskinesia with Radial Spoke Defects. (2015) (50)
Extent, Causes, and Consequences of Small RNA Expression Variation in Human Adipose Tissue (2012) (49)
Managing clinically significant findings in research: the UK10K example (2014) (45)
A graph-based approach to diploid genome assembly (2018) (44)
A high-content platform to characterise human induced pluripotent stem cell lines (2016) (44)
Rare Variant Analysis of Human and Rodent Obesity Genes in Individuals with Severe Childhood Obesity (2017) (43)
Complete vertebrate mitogenomes reveal widespread repeats and gene duplications (2021) (41)
Deep short-read sequencing of chromosome 17 from the mouse strains A/J and CAST/Ei identifies significant germline variation and candidate genes that regulate liver triglyceride levels (2009) (41)
Late Quaternary dynamics of Arctic biota from ancient environmental genomics (2021) (41)
Bounds on the learning capacity of some multi-layer networks (1989) (39)
Tree-based maximal likelihood substitution matrices and hidden Markov models (1995) (39)
Tc7, a Tc1-hitch hiking transposon in Caenorhabditis elegans. (1997) (35)
Accounting for Non-genetic Factors Improves the Power of eQTL Studies (2008) (34)
Identity-by-Descent-Based Phasing and Imputation in Founder Populations Using Graphical Models (2011) (34)
Steroid receptor coactivator-1 modulates the function of Pomc neurons and energy homeostasis (2019) (31)
Cardelino: computational integration of somatic clonal substructure and single-cell transcriptomes (2020) (31)
Improved techniques for the identification of pseudogenes (2004) (30)
The anatomy of successful computational biology software (2013) (29)
Identifying Extrinsic versus Intrinsic Drivers of Variation in Cell Behavior in Human iPSC Lines from Healthy Donors (2019) (29)
Homozygous loss-of-function variants in European cosmopolitan and isolate populations (2015) (26)
A Genome-Wide Survey of Genetic Variation in Gorillas Using Reduced Representation Sequencing (2013) (25)
Why sequence all eukaryotes? (2022) (25)
YFitter: Maximum likelihood assignment of Y chromosome haplogroups from low-coverage sequence data (2014) (24)
Whole-exome sequencing of 228 patients with sporadic Parkinson’s disease (2017) (24)
Estimation of Epistatic Variance Components and Heritability in Founder Populations and Crosses (2014) (24)
Enhanced protein domain discovery using taxonomy (2004) (23)
Gene expression and development databases forC. elegans (1997) (22)
Narrow-sense heritability estimation of complex traits using identity-by-descent information (2017) (22)
Low-frequency variation in TP53 has large effects on head circumference and intracranial volume (2018) (22)
A Method for Checking Genomic Integrity in Cultured Cell Lines from SNP Genotyping Data (2016) (22)
Sequence variation aware genome references and read mapping with the variation graph toolkit (2017) (22)
A haplotype-aware de novo assembly of related individuals using pedigree sequence graph (2019) (20)
Using reference-free compressed data structures to analyze sequencing reads from thousands of human genomes (2016) (20)
Sequence assembly with CAFTOOLS. (1998) (20)
Common genetic variation drives molecular heterogeneity in human iPSCs (2016) (19)
Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph (2019) (19)
The DNA sequence and biological annotation of human chromosome 1 (vol 441, pg 315, 2006) (2006) (18)
Environmental genomics of Late Pleistocene black bears and giant short-faced bears (2021) (18)
Genome Graphs (2017) (18)
A high-quality, chromosome-level genome assembly of the Black Soldier Fly (Hermetia illucens L.) (2020) (18)
Vertebrate gene finding from multiple-species alignments using a two-level strategy (2006) (18)
False gene and chromosome losses affected by assembly and sequence errors (2021) (17)
Method for Calculation of Probability of Matching a Bounded Regular Expression in a Random Data String (1995) (17)
Mapping short DNA sequencing reads and variants calling using mapping quality scores ( Supplementary Text ) (2008) (16)
Standards recommendations for the Earth BioGenome Project (2022) (16)
Substantial somatic genomic variation and selection for BCOR mutations in human induced pluripotent stem cells (2021) (16)
trio-sga: facilitating de novo assembly of highly heterozygous genomes with parent-child trios (2016) (16)
Crumble: reference free lossy compression of sequence quality values (2018) (16)
Genomix: a method for combining gene-finders' predictions, which uses evolutionary conservation of sequence and intron-exon structure (2007) (16)
Whole-genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow (2017) (15)
A haplotype-resolved, de novo genome assembly for the wood tiger moth (Arctia plantaginis) through trio binning (2020) (15)
Population Genomics of Stone Age Eurasia (2022) (15)
The rate of false polymorphisms introduced when imputing genotypes from global imputation panels (2016) (15)
souporcell: Robust clustering of single cell RNAseq by genotype and ambient RNA inference without reference genotypes (2019) (14)
A Table-Driven, Full-Sensitivity Similarity Search Algorithm (2003) (13)
Mapping epigenetic divergence in the massive radiation of Lake Malawi cichlid fishes (2020) (13)
Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph (2020) (13)
Consortium, G.P A map of human genome variation from population-scale sequencing. Nature 467, 1061-1073 (2010) (13)
Inferring Selection on Amino Acid Preference in Protein Domains (2008) (13)
An Expert System for Processing Sequence Homology Data (1994) (12)
Whole genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene (2018) (12)
A 2-million-year-old ecosystem in Greenland uncovered by environmental DNA (2022) (12)
Genomic consequences of domestication of the Siamese fighting fish (2021) (12)
Multiple laboratory mouse reference genomes define strain specific haplotypes and novel functional loci (2018) (11)
Revising the human mutation rate: implications for understanding human evolution (2012) (11)
Biological sequence analysis: Markov chains and hidden Markov models (1998) (11)
A direct multi-generational estimate of the human mutation rate from autozygous segments seen in thousands of parentally related individuals (2016) (11)
Placing Ancient DNA Sequences into Reference Phylogenies (2020) (11)
Learning from your neighbour (1992) (11)
A high resolution integrated yeast artificial chromosome clone map of human chromosome 22. (1995) (10)
Whole-exome sequencing in an isolated population from the Dalmatian island of Vis (2016) (10)
Ethical, legal, and social issues in the Earth BioGenome Project (2021) (10)
Erratum: WormBase: Network access to the genome and biology of Caenorhabditis elegans (Nucleic Acids Research (2001) vol. 29 (82-86)) (2001) (10)
Publisher Correction: Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression (2020) (9)
The genome sequence of the channel bull blenny, Cottoperca gobio (Günther, 1861) (2020) (9)
WormBase: Annotating many nematode genomes. (2012) (9)
The genome sequence of the brown trout, Salmo trutta Linnaeus 1758 (2021) (9)
Genomics of cold adaptations in the Antarctic notothenioid fish radiation (2022) (9)
A conserved sequence motif in 3' untranslated regions of ribosomal protein mRNAs in nematodes. (2006) (8)
read sequencing De novo assembly of human genomes with massively parallel short (2013) (8)
Base qualities help sequencing software. (1998) (8)
Pathway-Based Factor Analysis of Gene Expression Data Produces Highly Heritable Phenotypes That Associate with Age (2015) (8)
Complete vertebrate mitogenomes reveal widespread gene duplications and repeats (2020) (7)
Differential use of multiple genetic sex determination systems in divergent ecomorphs of an African crater lake cichlid (2021) (7)
False gene and chromosome losses in genome assemblies caused by GC content variation and repeats (2022) (6)
Efficient iterative Hi-C scaffolder based on N-best neighbors (2021) (6)
On the correspondence between network models and the nervous system (1989) (6)
Product Units with Trainable Exponents and Multi-Layer Networks (1989) (5)
Biological sequence analysis: Building phylogenetic trees (1998) (5)
The genome sequence of the eastern grey squirrel, Sciurus carolinensis Gmelin, 1788 (2020) (5)
Biological sequence analysis: Pairwise alignment (1998) (5)
Epigenetic divergence during early stages of speciation in an African crater lake cichlid fish (2021) (5)
Erratum: BAC TransgeneOmics: A high-throughput method for exploration of protein function in mammals (Nature Methods (2008) vol. 5 (409-415)) (2008) (5)
Contrasting genome dynamics between domesticated and wild yeasts (2016) (4)
Common genetic variation drives molecular heterogeneity in human iPSCs (vol 546, pg 370, 2017) (2017) (4)
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly (2016) (4)
The genome sequence of the Eurasian red squirrel, Sciurus vulgaris Linnaeus 1758 (2020) (4)
APPENDIX 2 Neuroanatomy (1988) (4)
Detecting archaic introgression without archaic reference genomes (2018) (4)
Abbreviations: ModENCODE, Model Organism Database ENCyclopedia Of DNA Elements; EST, Expressed Sequence Tag; cDNA, complementary DNA; RNASeq, RNA sequencing by 2nd generation technologies; C., Caenorhabditis; INSDC, International Nucleotide Sequence Database Collaboration (2012) (3)
Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression (2020) (3)
A haplotype-aware de novo assembly of related individuals using pedigree graph (2019) (3)
Fast and Scalable Genome-Wide Inference of Local Tree Topologies from Large Number of Haplotypes Based on Tree Consistent 𝒫ℬ𝒲𝒯 Data Structure (2019) (3)
High levels of RNA-editing site conservation amongst 15 laboratory mouse strains (2012) (3)
Biological sequence analysis: RNA structure analysis (1998) (3)
Biological sequence analysis: Profile HMMs for sequence families (1998) (3)
Biological sequence analysis: Probabilistic approaches to phylogeny (1998) (3)
Viral coinfection analysis using a MinHash toolkit (2019) (3)
Biological sequence analysis: Pairwise alignment using HMMs (1998) (3)
The Selection Landscape and Genetic Legacy of Ancient Eurasians (2022) (3)
The genome sequence of the ringlet, Aphantopus hyperantus Linnaeus 1758 (2021) (3)
The genome sequence of the European golden eagle, Aquila chrysaetos chrysaetos Linnaeus 1758 (2021) (2)
Gene expression changes with age in skin, adipose tissue, blood and brain (2013) (2)
Complete vertebrate mitogenomes reveal widespread repeats and gene duplications (2021) (2)
GFAKluge: A C++ library and command line utilities for the Graphical Fragment Assembly formats (2019) (2)
The genome sequence of the Eurasian river otter, Lutra lutra Linnaeus 1758 (2020) (2)
Invited Lecture - Accelerating Smith-Waterman Searches (2002) (2)
Rare Variant Analysis of Human and Rodent Obesity Genes in Individuals with Severe Childhood Obesity (2017) (2)
Purging of deleterious variants in Italian founder populations with extended autozygosity (2015) (2)
Evolutionary genomics at the human-environment interface in Africa. (2020) (1)
The methylomes of Lake Malawi cichlids reveal epigenetic variation associated with phenotypic diversification (2020) (1)
High-resolution species assignment of Anopheles mosquitoes using k-mer distances on targeted sequences (2022) (1)
Low-frequency variation in TP53 has large effects on head circumference and intracranial volume (2019) (1)
The Genome 10K Project: A Way Forward Further (2015) (1)
MSPcrunch: a blast enhancement tool for large-scale sequence similarity analysis (1997) (1)
Biological sequence analysis: Multiple sequence alignment methods (1998) (1)
Identifying the genetic basis of variation in cell behaviour in human iPS cell lines from healthy donors (2018) (1)
Erratum: A rare variant in APOC3 is associated with plasma triglyceride and VLDL levels in Europeans (2015) (1)
Purging of deleterious variants due to drift and founder effect in Italian populations with extended autozygosity (2015) (1)
Acedb genome database (2005) (1)
Genetic variation influencing DNA methylation provides insights into molecular mechanisms regulating genomic function (2022) (1)
Transcriptome Sequencing Reveals Widespread Gene-Gene and Gene-Environment Interactions (2014) (1)
Erratum: Characterization of functional methylomes by next-generation capture sequencing identifies novel disease-associated variants (2015) (1)
Erratum: Whole-genome sequence-based analysis of thyroid function (2015) (1)
Ultra-fast genome-wide inference of pairwise coalescence times (2023) (1)
Erratum: The anatomy of successful computational biology software (2014) (1)
State Space and Unobserved Component Models: Finding genes in the human genome with hidden Markov models (2004) (1)
Publisher Correction: Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression (2020) (1)
Tree consistent PBWT and their application to reconstructing Ancestral Recombination Graphs and demographic inference (2015) (1)
Author Correction: Late Quaternary dynamics of Arctic biota from ancient environmental genomics (2022) (1)
OCTOBASE: ACEDB implementation of human chromosome 8 (1994) (1)
Interpreting the Human Genome Sequence, Using Stochastic Grammars (2001) (1)
Biological sequence analysis: Introduction (1998) (1)
Ecological Speciation Promoted by Divergent Regulation of Functional Genes Within African Cichlid Fishes (2022) (1)
First chromosome scale genomes of ithomiine butterflies (Nymphalidae: Ithomiini): Comparative models for mimicry genetic studies (2022) (0)
Souporcell: robust clustering of single-cell RNA-seq data by genotype without reference genotypes (2020) (0)
The Hypolimnas misippus genome supports a common origin of the W chromosome in Lepidoptera (2023) (0)
Biological sequence analysis: Transformational grammars (1998) (0)
Correction: Quantitative Genetics of CTCF Binding Reveal Local Sequence Effects and Different Modes of X-Chromosome Association (2015) (0)
A theoretical analysis of taxonomic binning accuracy (2022) (0)
Three sequential sex chromosome – autosome fusions in Heliconius butterflies (2023) (0)
Neural networks. Learning from your neighbour. (1992) (0)
BIOINFORMATICS The Sequence Alignment/Map format and SAMtools (0)
Genome sequence assembly evaluation using long-range sequencing data (2022) (0)
Haplotype-specific recombination shapes the genealogy of ancestral European haplotypes (2008) (0)
Opinion Did Our Species Evolve in Subdivided Populations across Africa , and Why Does It Matter ? (0)
De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms (2017) (0)
Biological sequence analysis: Bibliography (1998) (0)
Correction to: Efficient iterative Hi-C scaffolder based on N-best neighbors (2021) (0)
Contrasting genome dynamics between domesticated 1 and wild yeasts 2 3 (2016) (0)
Explorer Mouse genomic variation and its effect on phenotypes and gene regulation (2017) (0)
Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci (2018) (0)
Probabilities and probabilistic models (2002) (0)
Recombination Suppression is Unlikely to Contribute to Speciation in Sympatric Heliconius Butterflies (2016) (0)
Whole-genome sequencing identifies non-coding variants near EN 1 with large effects on bone mineral density (2014) (0)
Viral coinfection analysis using a MinHash toolkit (2019) (0)
Correction to: A haplotype-resolved, de novo genome assembly for the wood tiger moth (Arctia plantaginis) through trio binning (2021) (0)
S.2518 - 115th Congress (2017-2018): A bill to amend title 11, United States Code, to improve protections for employees and retirees in business bankruptcies. (2018) (0)
Reply to: When did mammoths go extinct? (2022) (0)
Cortical maps (1990) (0)
Corrigendum (2021) (0)
Author Correction: Late Quaternary dynamics of Arctic biota from ancient environmental genomics (2022) (0)
S.2724 - 115th Congress (2017-2018): A bill to reform the use of solitary confinement and other forms of restrictive housing in the Bureau of Prisons, and for other purposes. (2018) (0)
H.R.3906 - Energy and Environmental Security Act of 1990 (1990) (0)
S.Res.535 - 115th Congress (2017-2018): A resolution reaffirming the United States commitment to the North Atlantic Treaty Organization. (2018) (0)
H.R.160 - To amend the Federal Aviation Act of 1958 to make permanent the prohibition against smoking on scheduled flights of 2 hours or less in duration. (1989) (0)
Efficient iterative Hi-C scaffolder based on N-best neighbors (2021) (0)
Author response: Population-scale proteome variation in human induced pluripotent stem cells (2020) (0)
Erratum (2004) (0)
S.2119 - 115th Congress (2017-2018): A bill to amend title 38, United States Code, to prohibit smoking in any facility of the Veterans Health Administration, and for other purposes. (2017) (0)
Revised SOM 06.24.2015 (2015) (0)
S.Res.179 - 115th Congress (2017-2018): A resolution expressing support for the designation of June 2, 2017, as "National Gun Violence Awareness Day" and June 2017 as "National Gun Violence Awareness Month". (2017) (0)
S.2535 - 115th Congress (2017-2018): A bill to amend the Controlled Substances Act to strengthen Drug Enforcement Administration discretion in setting opioid quotas. (2018) (0)
Author Correction: Late Quaternary dynamics of Arctic biota from ancient environmental genomics (2022) (0)
S.2785 - 115th Congress (2017-2018): A bill to designate foreign persons who improperly interfere in United States elections as inadmissible aliens, and for other purposes. (2018) (0)
S.2328 - 115th Congress (2017-2018): A bill making continuing appropriations for military pay and death benefits in the event of a Government shutdown. (2018) (0)
S.2830 - 115th Congress (2017-2018): A bill to reauthorize the rural emergency medical services training and equipment assistance program under section 330J of the Public Health Service Act. (2018) (0)
Biomarkers of skin ageing using genome wide transcriptomics (2011) (0)
Supplement to: Haplotype-aware graph indexes (2019) (0)
Abstract 3570: Germline structural variant detection with variation graphs (2017) (0)
Whole-genome sequence-based analysis of thyroid function (vol 6, 5681, 2015) (2015) (0)
Cardelino: computational integration of somatic clonal substructure and single-cell transcriptomes (2020) (0)
multiple genome sequences Inferring human population size and separation history from (2014) (0)
Running title : Covariance models of RNA RNA Sequence Analysis Using Covariance Models (1998) (0)
TOWARDS A FULLY INTEGRATED, HIGH-RESOLUTION PHYSICAL MAP OF CHROMOSOME-22 (1994) (0)
Local Ancestry Inference for Complex Population Histories (2023) (0)
1 Backpropagation : The Basic Theory (2008) (0)
Whole-genome sequencing and deep imputation identifies non-coding variants near Engrailed-1 with large effects on bone mineral density and fracture (2015) (0)
Extending reference assembly models (2015) (0)
Estimating the human mutation rate from autozygous segments reveals population differences in human mutational processes (2017) (0)
Nematode C. elegans, Nervous System (1988) (0)
A surfeit of models (2002) (0)
Author response: Genetic interactions affecting human gene expression identified by variance association mapping (2014) (0)
The ACEDB genome database:support for large scale sequencing projects (1993) (0)
[X]uniqMAP: unique gene sequence regions in the human and mouse genomes (2006) (0)
Abstract 3273: rkmh: A MinHash toolbox for analyzing HPV coinfections (2018) (0)
BIOL 495S/ CS 490B/ MATH 490B/ STAT 490B (2002) (0)
Universitet Low-frequency variation in TP 53 has large effects on head circumference and intracranial (2019) (0)
Caecilian genomes reveal the molecular basis of adaptation, and convergent evolution of limblessness in snakes and caecilians (2023) (0)
Lepidoptera genomics based on 88 chromosomal reference sequences informs population genetic parameters for conservation (2023) (0)
Applying Large-Scale Genetic and Genomic Datasets to Complex Disease Association (2010) (0)

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