Robert B. Russell
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Robert B. Russell's AcademicInfluence.com Rankings
Robert B. Russellengineering Degrees
Engineering
#6244
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#7559
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Electrical Engineering
#1829
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#1930
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Robert B. Russellcomputer-science Degrees
Computer Science
#8171
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#8593
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Computational Linguistics
#1773
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#1791
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Machine Learning
#3266
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#3305
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Artificial Intelligence
#3571
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#3622
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Engineering Computer Science
Robert B. Russell's Degrees
- PhD Computer Science Stanford University
- Masters Electrical Engineering University of California, Berkeley
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(Suggest an Edit or Addition)Robert B. Russell's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Proteome survey reveals modularity of the yeast cell machinery (2006) (2642)
- Principles of MicroRNA–Target Recognition (2005) (2366)
- bantam Encodes a Developmentally Regulated microRNA that Controls Cell Proliferation and Regulates the Proapoptotic Gene hid in Drosophila (2003) (2077)
- Protein disorder prediction: implications for structural proteomics. (2003) (1197)
- Animal MicroRNAs Confer Robustness to Gene Expression and Have a Significant Impact on 3′UTR Evolution (2005) (1147)
- GlobPlot: exploring protein sequences for globularity and disorder (2003) (984)
- Identification of Drosophila MicroRNA Targets (2003) (835)
- Dissecting the genomic complexity underlying medulloblastoma (2012) (777)
- Systematic Discovery of In Vivo Phosphorylation Networks (2007) (747)
- Amino‐Acid Properties and Consequences of Substitutions (2003) (732)
- Multiple protein sequence alignment from tertiary structure comparison: Assignment of global and residue confidence levels (1992) (680)
- SuperTarget and Matador: resources for exploring drug-target relationships (2007) (537)
- WD40 proteins propel cellular networks. (2010) (533)
- Recurrent mutation of the ID3 gene in Burkitt lymphoma identified by integrated genome, exome and transcriptome sequencing (2012) (404)
- Proteome Organization in a Genome-Reduced Bacterium (2009) (401)
- Structure-Based Assembly of Protein Complexes in Yeast (2004) (372)
- Interrogating protein interaction networks through structural biology (2002) (336)
- Structural systems biology: modelling protein interactions (2006) (327)
- The relationship between sequence and interaction divergence in proteins. (2003) (322)
- Systematic Discovery of New Recognition Peptides Mediating Protein Interaction Networks (2005) (318)
- Principles of MicroRNATarget Recognition (2005) (315)
- Impact of Genome Reduction on Bacterial Metabolism and Its Regulation (2009) (288)
- On the evolution of protein folds: are similar motifs in different protein folds the result of convergence, insertion, or relics of an ancient peptide world? (2001) (288)
- Illuminating G-Protein-Coupling Selectivity of GPCRs (2019) (278)
- Analysis and prediction of functional sub-types from protein sequence alignments. (2000) (272)
- A structural perspective on protein-protein interactions. (2004) (267)
- Detection of protein three-dimensional side-chain patterns: new examples of convergent evolution. (1998) (250)
- InterPreTS: protein Interaction Prediction through Tertiary Structure (2003) (225)
- Peptide-mediated interactions in biological systems: new discoveries and applications. (2008) (214)
- Supersites within superfolds. Binding site similarity in the absence of homology. (1998) (213)
- Recognition of analogous and homologous protein folds: analysis of sequence and structure conservation. (1997) (205)
- Ten thousand interactions for the molecular biologist (2004) (201)
- 3did: interacting protein domains of known three-dimensional structure (2004) (200)
- An organelle-specific protein landscape identifies novel diseases and molecular mechanisms (2016) (189)
- Peptides mediating interaction networks: new leads at last. (2006) (183)
- Annotation in three dimensions. PINTS: Patterns in Non-homologous Tertiary Structures (2003) (179)
- The C-Terminal Domains of the GABAB Receptor Subunits Mediate Intracellular Trafficking But Are Not Required for Receptor Signaling (2001) (176)
- Structural features can be unconserved in proteins with similar folds. An analysis of side-chain to side-chain contacts secondary structure and accessibility. (1994) (173)
- Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium (2012) (171)
- New roles for structure in biology and drug discovery (2000) (169)
- A recurrent 11q aberration pattern characterizes a subset of MYC-negative high-grade B-cell lymphomas resembling Burkitt lymphoma. (2014) (162)
- PepSite: prediction of peptide-binding sites from protein surfaces (2012) (161)
- A model for statistical significance of local similarities in structure. (2003) (157)
- Accurate Prediction of Peptide Binding Sites on Protein Surfaces (2009) (152)
- A systematic screen for protein–lipid interactions in Saccharomyces cerevisiae (2010) (150)
- Protein fold recognition by mapping predicted secondary structures. (1996) (138)
- DILIMOT: discovery of linear motifs in proteins (2006) (131)
- The mutational pattern of primary lymphoma of the central nervous system determined by whole-exome sequencing (2014) (127)
- A dynamic structural model for estrogen receptor-alpha activation by ligands, emphasizing the role of interactions between distant A and E domains. (2002) (120)
- DNA methylome analysis in Burkitt and follicular lymphomas identifies differentially methylated regions linked to somatic mutation and transcriptional control (2015) (120)
- Illuminating drug discovery with biological pathways (2005) (119)
- Predictions without templates: New folds, secondary structure, and contacts in CASP5 (2003) (117)
- Subunit architecture of intact protein complexes from mass spectrometry and homology modeling. (2008) (111)
- Conservation analysis and structure prediction of the SH2 family of phosphotyrosine binding domains (1992) (109)
- Geminate Structures of African Cassava Mosaic Virus (2004) (109)
- Illuminating the Onco-GPCRome: Novel G protein–coupled receptor-driven oncocrine networks and targets for cancer immunotherapy (2019) (102)
- A complex prediction: three‐dimensional model of the yeast exosome (2002) (100)
- The third dimension for protein interactions and complexes. (2002) (100)
- Exon structure conservation despite low sequence similarity: a relic of dramatic events in evolution? (2001) (99)
- Protein complexes: structure prediction challenges for the 21st century. (2005) (94)
- Targeting and tinkering with interaction networks. (2008) (94)
- EZHIP / CXorf67 mimics K27M mutated oncohistones and functions as an intrinsic inhibitor of PRC2 function in aggressive posterior fossa ependymoma. (2019) (92)
- Capturing protein communities by structural proteomics in a thermophilic eukaryote (2017) (91)
- Differential localization of coatomer complex isoforms within the Golgi apparatus (2007) (88)
- Sialidase‐like Asp‐boxes: Sequence‐similar structures within different protein folds (2001) (87)
- Functional Analysis of H-Ryk, an Atypical Member of the Receptor Tyrosine Kinase Family (1999) (84)
- CiliaCarta: An integrated and validated compendium of ciliary genes (2017) (82)
- Genomic and transcriptomic changes complement each other in the pathogenesis of sporadic Burkitt lymphoma (2019) (81)
- A careful disorderliness in the proteome: Sites for interaction and targets for future therapies (2008) (81)
- Annotation in three dimensions (2003) (81)
- The limits of protein secondary structure prediction accuracy from multiple sequence alignment. (1993) (80)
- Mechismo: predicting the mechanistic impact of mutations and modifications on molecular interactions (2014) (78)
- The three-dimensional molecular structure of the desmosomal plaque (2011) (76)
- Recurrent mutation of JAK3 in T‐cell prolymphocytic leukemia (2014) (75)
- Amino Acid Properties and Consequences of Substitutions (2003) (74)
- Molecular dissection of human Argonaute proteins by DNA shuffling (2013) (73)
- Potential artefacts in protein‐interaction networks (2002) (72)
- Landscape of nuclear transport receptor cargo specificity (2017) (68)
- Systematic searches for molecular synapomorphies in model metazoan genomes give some support for Ecdysozoa after accounting for the idiosyncrasies of Caenorhabditis elegans (2004) (66)
- Recognition of analogous and homologous protein folds--assessment of prediction success and associated alignment accuracy using empirical substitution matrices. (1998) (66)
- Fast fitting of atomic structures to low-resolution electron density maps by surface overlap maximization. (2004) (61)
- Genes encoding members of the JAK‐STAT pathway or epigenetic regulators are recurrently mutated in T‐cell prolymphocytic leukaemia (2016) (60)
- An automated stochastic approach to the identification of the protein specificity determinants and functional subfamilies (2010) (59)
- Recurrent RHOA mutations in pediatric Burkitt lymphoma treated according to the NHL‐BFM protocols (2014) (58)
- Structure of the full-length HPr kinase/phosphatase from Staphylococcus xylosus at 1.95 Å resolution: Mimicking the product/substrate of the phospho transfer reactions (2002) (55)
- A more complete, complexed and structured interactome. (2007) (55)
- Defective homologous recombination DNA repair as therapeutic target in advanced chordoma (2019) (53)
- Protein fold irregularities that hinder sequence analysis. (1998) (49)
- Fold recognition using sequence and secondary structure information (1999) (48)
- Crystal Structure of an Archaeal Class I Aldolase and the Evolution of (βα)8 Barrel Proteins* (2003) (45)
- The mutational landscape of Burkitt-like lymphoma with 11q aberration is distinct from that of Burkitt lymphoma. (2019) (45)
- Finding functional sites in structural genomics proteins. (2004) (44)
- Systematic identification of phosphorylation-mediated protein interaction switches (2017) (41)
- The serine protease inhibitor canonical loop conformation: examples found in extracellular hydrolases, toxins, cytokines and viral proteins. (2000) (39)
- Cryptogenic cholestasis in young and adults: ATP8B1, ABCB11, ABCB4, and TJP2 gene variants analysis by high-throughput sequencing (2018) (39)
- Negative protein-protein interaction datasets derived from large-scale two-hybrid experiments. (2012) (37)
- Defining clinical subgroups and genotype–phenotype correlations in NBAS-associated disease across 110 patients (2019) (37)
- Combining specificity determining and conserved residues improves functional site prediction (2009) (36)
- Misleading local sequence alignments: implications for comparative protein modelling. (1998) (35)
- Taking the mystery out of biological networks (2004) (33)
- CASH – a β-helix domain widespread among carbohydrate-binding proteins (2002) (30)
- The PCBP1 gene encoding poly(rc) binding protein i is recurrently mutated in Burkitt lymphoma (2015) (29)
- An SH2—SH3 domain hybrid (1993) (28)
- Combinations of Protein-Chemical Complex Structures Reveal New Targets for Established Drugs (2011) (27)
- Classification of protein folds (2002) (27)
- Domain insertion. (1994) (26)
- Fold recognition from sequence comparisons (2001) (26)
- Modular architecture of nucleotide-binding pockets (2010) (26)
- Interactions between the Fyn SH3‐domain and adaptor protein Cbp/PAG derived ligands, effects on kinase activity and affinity (2008) (25)
- Subunit Architecture of Intact Protein Complexes from Mass Spectrometry and Homology Modeling (2008) (24)
- Two new examples of protein structural similarities within the structure-function twilight zone. (1997) (24)
- Topic Pages: PLoS Computational Biology Meets Wikipedia (2012) (24)
- Content Disputes in Wikipedia Reflect Geopolitical Instability (2011) (23)
- The hard cell: From proteomics to a whole cell model (2007) (22)
- Domain Recombination: A Workhorse for Evolutionary Innovation (2010) (21)
- Protein structure prediction (1993) (20)
- Structure Prediction: How good are we? (1995) (20)
- Evolutionary relationship between the bacterial HPr kinase and the ubiquitous PEP‐carboxykinase: expanding the P‐loop nucleotidyl transferase superfamily (2002) (20)
- Molecular switch from MYC to MYCN expression in MYC protein negative Burkitt lymphoma cases (2019) (17)
- Next generation protein structure predictions and genetic variant interpretation. (2021) (16)
- Insights into cancer severity from biomolecular interaction mechanisms (2016) (16)
- Rare, functional, somatic variants in gene families linked to cancer genes: GPCR signaling as a paradigm (2019) (16)
- CASH--a beta-helix domain widespread among carbohydrate-binding proteins. (2002) (15)
- PRECOG: PREdicting COupling probabilities of G-protein coupled receptors (2019) (14)
- A structural perspective on proteinprotein interactions (2004) (13)
- Genomics, proteomics and bioinformatics: all in the same boat (2002) (13)
- Proline-Rich Regions in Transcriptional Complexes: Heading in Many Directions (2007) (13)
- ProtChemSI: a network of protein–chemical structural interactions (2011) (13)
- The Interaction of Munc18-1 Helix 11 and 12 with the Central Region of the VAMP2 SNARE Motif Is Essential for SNARE Templating and Synaptic Transmission (2020) (12)
- Characterizing Protein Interactions Employing a Genome-Wide siRNA Cellular Phenotyping Screen (2014) (12)
- Predicting Function From Structure: Examples of the Serine Protease Inhibitor Canonical Loop Conformation Found in Extracellular Proteins (2001) (11)
- The Kvβ2 subunit of voltage-gated potassium channels is interacting with ProSAP2/Shank3 in the PSD (2014) (10)
- Understanding and Predicting Protein Assemblies With 3D Structures (2003) (10)
- Structural similarity to bridge sequence space: Finding new families on the bridges (2005) (10)
- Computational Identification of Novel Amino-Acid Interactions in HIV Gag via Correlated Evolution (2012) (9)
- Biochemically validated structural model of the 15‐subunit intraflagellar transport complex IFT‐B (2022) (9)
- A novel binding site in catalase is suggested by structural similarity to the calycin superfamily. (1996) (8)
- RhoGAP19D inhibits Cdc42 laterally to control epithelial cell shape and prevent invasion (2020) (8)
- A lipid-binding domain in Wnt: a case of mistaken identity? (1999) (8)
- Genetic variants affecting equivalent protein family positions reflect human diversity (2017) (8)
- Protein fold recognition from secondary structure assignments (1995) (7)
- Proceedings of the Frontiers of Retrovirology Conference 2016 (2016) (7)
- Cancer genetics meets biomolecular mechanism—bridging an age‐old gulf (2018) (6)
- Computational method for predicting protein functional sites with the use of specificity determinants (2007) (6)
- Mutagenesis of N-terminal residues of feline foamy virus Gag reveals entirely distinct functions during capsid formation, particle assembly, Gag processing and budding (2016) (5)
- A shortcut to peptides to modulate platelets. (2007) (5)
- The structure of proteins. (2012) (4)
- Molecular biology of human renin and its gene. (1991) (4)
- Classification of protein folds (2000) (4)
- Towards an Intelligent System for the Automatic Assignment of Domains in Globular Proteins (1995) (4)
- Systems Biology: Understanding the Biological Mosaic (2005) (3)
- Getting the most from your protein sequence. (2003) (3)
- A more structured metabolome (2009) (2)
- Genes from liver tissue affected in phthalate treated rats, coupled with structural analysis of phthalates jointly predict testicular toxicity and elucidates possible mechanisms (2010) (2)
- PRECOGx: exploring GPCR signaling mechanisms with deep protein representations (2022) (2)
- Bacterium Proteome Organization in a Genome-Reduced (2009) (2)
- Generation and interpretation of protein sequence and structural multiple alignments (1992) (2)
- Three-Dimensional Structures in Target Discovery and Validation (2006) (2)
- Mechnetor: a web server for exploring protein mechanism and the functional context of genetic variants (2021) (2)
- Biochemically validated structural model of the 15-subunit IFT-B complex (2022) (2)
- Leveraging biochemical reactions to unravel functional impacts of cancer somatic variants affecting protein interaction interfaces. (2021) (1)
- Analysis and prediction of functional sub-types from protein sequence alignments 1 1 Edited by J. Th (2000) (1)
- Leveraging biochemical reactions to unravel functional impacts of cancer somatic variants affecting protein interaction interfaces (2021) (1)
- Unraveling Mechanisms of Toxicity with the Power of Pathways: ToxWiz Tool as an Illustrative Example (2008) (1)
- Focal structural variants revealed by whole genome sequencing disrupt the histone demethylase KDM4C in B-cell lymphomas (2022) (1)
- Corrigendum: Insights into cancer severity from biomolecular interaction mechanisms (2017) (1)
- The human signal peptidase complex acts as a quality control enzyme for membrane proteins (2022) (1)
- Harry Potter and the structural biologist's (Key)stone (2006) (1)
- , Metabolism and Its Regulation Impact of Genome Reduction on Bacterial (2009) (1)
- A lipid-binding domain in Wnt (1999) (1)
- Structure of the full-length HPr kinase phosphatase, mimicking the product/substrate of the phospho transfer reactions (2002) (0)
- Predicting function from protein structure comparison (2000) (0)
- Target Safety Assessment with ToxWiz Expert Database (2013) (0)
- Histone methylation-modifiers, such as EZH2 and KMT2D, are recurrently altered in B-cell lymphomas. To comprehensively describe the landscape of alterations affecting genes encoding histone methylation-modifiers in lymphomagenesis (2023) (0)
- Prediction of Protein Structure from Multiple Sequence Alignment (1993) (0)
- Leveraging biochemical reactions to unravel functional impacts of cancer somatic variants affecting protein interaction interfaces. (2021) (0)
- A Simulation based Approach for Detection of Retinitis Pigmentosa using Protein Synthesis (2020) (0)
- Structural Genomics and Structural Bioinformatics. (2003) (0)
- Using mode of action framework in prediction of skin toxicity (2014) (0)
- Systems‐wide analysis of protein complexes in Saccharomyces cerevisiae (2007) (0)
- ToxWiz software identifies chemicals that may affect eugenol- induced skin sensitization (2013) (0)
- Making the paper: Giulio Superti-Furga (2006) (0)
- Quantified: Ireland (2006) (0)
- Using ToxWiz to predict toxicity mechanisms of combined exposure to coumarin and acetaminophen (2007) (0)
- Classification of protein folds. (2007) (0)
- The S-palmitoylome and DHHC-PAT interactome of Drosophila melanogaster S2R+ cells indicate a high degree of conservation to mammalian palmitoylomes (2021) (0)
- The current understanding of protein – lipid recognition comes from the study of a limited number of lipids , principally (2010) (0)
- Explorer An organelle-specific protein landscape identifies novel diseases and molecular mechanisms (2016) (0)
- Consequences of Substitutions (2007) (0)
- Overall Performance of Functional Site Comparison Cutoffs Number of Matches Dali Z Score PINTS E Value Dali PINTS Both Only Dali Only (2004) (0)
- Studying how genetic variants affect mechanism in biological systems. (2018) (0)
- -negative high-grade B-cell lymphomas resembling Burkitt lymphoma MYC A recurrent 11q aberration pattern characterizes a subset of (2014) (0)
- Understanding and predicting protein assemblies with 3 D structures (2014) (0)
- Cutting edge bioinformatics accelerate target safety assessment of epigenetic modifiers as new therapeutic targets in cancer (2017) (0)
- Systems biology approach to identify mechanism of toxicity of pioglitazone (2017) (0)
- EPEN-04. CXorf67 MIMICS ONCOGENIC HISTONE H3 K27M MUTATIONS AND FUNCTIONS AS INTRINSIC INHIBITOR OF PRC2 FUNCTION IN AGGRESSIVE POSTERIOR FOSSA EPENDYMOMA (2019) (0)
- A world-wide web server of protein domain assignment (2002) (0)
- Using ToxWiz software to explore the toxic effects of several tobacco components (2013) (0)
- Never-homozygous genetic variants in healthy populations are potential recessive disease candidates (2022) (0)
- Structural Systems Biology: Modeling Interactions and Networks for Systems Studies (2014) (0)
- Consequences of intramolecular ionic interactions for the activation rate of human pepsinogens A and C as revealed by molecular modelling. (1991) (0)
- Active site comparison : Assigning function to protein structures (0)
- Data Sources for Signature Discovery in Toxicology (2015) (0)
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What Schools Are Affiliated With Robert B. Russell?
Robert B. Russell is affiliated with the following schools:
