Robert I. Cukier

Robert I. Cukier's AcademicInfluence.com Rankings

Robert I. Cukier

Chemistry

#4539

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#5622

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chemistry Degrees

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Chemistry

Robert I. Cukier's Degrees

PhD Chemistry Stanford University
Masters Chemistry Stanford University
Bachelors Chemistry University of California, Berkeley

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Robert I. Cukier's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Study of the sensitivity of coupled reaction systems to uncertainties in rate coefficients. I Theory (1973) (963)
Nonlinear sensitivity analysis of multiparameter model systems (1977) (711)
Proton-coupled electron transfer. (1998) (552)
Study of the sensitivity of coupled reaction systems to uncertainties in rate coefficients. III. Analysis of the approximations (1975) (417)
Diffusion of Brownian spheres in semidilute polymer solutions (1984) (253)
Photoinduced electron transfer mediated by a hydrogen-bonded interface (1992) (162)
Proton-Coupled Electron Transfer Reactions: Evaluation of Rate Constants (1996) (106)
Mechanism for Proton-Coupled Electron-Transfer Reactions (1994) (94)
Molecular dynamics of apo-adenylate kinase: a principal component analysis. (2006) (78)
A Theory that Connects Proton-Coupled Electron-Transfer and Hydrogen-Atom Transfer Reactions† (2002) (76)
Molecular dynamics of apo-adenylate kinase: a distance replica exchange method for the free energy of conformational fluctuations. (2006) (68)
The transition from nonadiabatic to solvent controlled adiabatic electron transfer: Solvent dynamical effects in the inverted regime (1989) (62)
POLYMER ATTACHED METALLOCENES. EVIDENCE FOR SITE ISOLATION (1977) (59)
Theory and simulation of proton-coupled electron transfer, hydrogen-atom transfer, and proton translocation in proteins. (2004) (57)
Dynamics of diffusion‐controlled reactions among stationary sinks: Scaling expansion approach (1982) (56)
Water chain formation and possible proton pumping routes in Rhodobacter sphaeroides cytochrome c oxidase: a molecular dynamics comparison of the wild type and R481K mutant. (2005) (52)
Solvent effects on proton‐transfer reactions (1989) (48)
On the effects of solvent and intermolecular fluctuations in proton transfer reactions (1990) (47)
Effects of Sr2+-substitution on the reduction rates of Yz* in PSII membranes--evidence for concerted hydrogen-atom transfer in oxygen evolution. (2000) (46)
Control of proton‐transfer reactions with external fields (1993) (42)
Diffusion controlled processes among stationary reactive sinks: Effective medium approach (1983) (42)
A quantum molecular dynamics simulation of an excess electron in methanol (1993) (42)
Microscopic Theory of Brownian Motion: The Multiple-Time-Scale Point of View (1969) (41)
Prostaglandin Endoperoxide H Synthases (2007) (41)
Proton-Coupled Electron Transfer through an Asymmetric Hydrogen-Bonded Interface (1995) (39)
The transition from nonadiabatic to solvent controlled adiabatic electron transfer kinetics: The role of quantum and solvent dynamics (1988) (38)
Molecular dynamics and mutational analysis of the catalytic and translocation cycle of RNA polymerase (2012) (38)
Rotational Relaxation of Molecules in Fluids for Reorientations of Arbitrary Angle (1972) (37)
Quantum molecular dynamics simulation of proton transfer in cytochrome c oxidase. (2004) (37)
Generalized stochastic model for molecular rotational motion in dense media (1975) (37)
The RNA polymerase bridge helix YFI motif in catalysis, fidelity and translocation. (2013) (36)
Conformational coupling, bridge helix dynamics and active site dehydration in catalysis by RNA polymerase. (2010) (36)
Excess electron solvation in an imidazolium-based room-temperature ionic liquid revealed by ab initio molecular dynamics simulations. (2009) (35)
Concentration dependence of diffusion-controlled processes among stationary reactive sinks (1981) (35)
Concerted hydrogen-atom abstraction in photosynthetic water oxidation. (2000) (34)
Effect of static correlations on the pair friction coefficient (1980) (33)
The effect of surface diffusion on surface reaction rates (1983) (32)
On the microscopic origin of Stokes’ law (1980) (32)
MOLECULAR DYNAMICS AND QUANTUM CHEMISTRY STUDY OF A PROTON-COUPLED ELECTRON TRANSFER REACTION (1995) (32)
Catalytic mechanism of yeast cytosine deaminase: an ONIOM computational study. (2004) (31)
α-Helix C-Terminus Acting as a Relay to Mediate Long-Range Hole Migration in Proteins (2010) (31)
A molecular dynamics study of water chain formation in the proton-conducting K channel of cytochrome c oxidase. (2005) (30)
Rational design of hetero-ring-expanded guanine analogs with enhanced properties for modified DNA building blocks. (2007) (30)
Catalytic mechanism of guanine deaminase: an ONIOM and molecular dynamics study. (2007) (28)
Kinetic theory of self-diffusion in a hard-sphere fluid (1978) (28)
Vibrational relaxation in fluids: A critical analysis of the independent binary collision theory (1988) (27)
On the Microscopic Conditions for Linear Macroscopic Laws (1972) (27)
Five checkpoints maintaining the fidelity of transcription by RNA polymerases in structural and energetic details (2014) (26)
Non‐Arrhenius rate constants for nonadiabatic electron transfers: The role of quantum and solvent dynamics (1988) (26)
Rotational relaxation of molecules in isotropic and anisotropic fluids (1974) (25)
Kinetic theory of single-particle motion in a fluid (1978) (25)
Apo adenylate kinase encodes its holo form: a principal component and varimax analysis. (2009) (25)
Hetero-ring-expansion design for adenine-based DNA motifs: evidence from DFT calculations and molecular dynamics simulations. (2009) (25)
States and migration of an excess electron in a pyridinium-based, room-temperature ionic liquid: an ab initio molecular dynamics simulation exploration. (2010) (25)
Role of solvent dynamics in the charge recombination of a donor/acceptor pair (1992) (25)
Orthogonal polynomial solutions of the Fokker-Planck equation (1973) (25)
On the quencher concentration dependence of fluorescence quenching: The role of solution dielectric constant and ionic strength (1985) (24)
Kinetic-Theory Derivation of the Stokes-Einstein Law (1977) (24)
A molecular dynamics exploration of the catalytic mechanism of yeast cytosine deaminase. (2005) (23)
Absorption and fluorescence emission spectroscopic characters of size-expanded yDNA bases and effect of deoxyribose and base pairing. (2009) (23)
Spin Relaxation: The Multiple‐Time‐Scale Point of View (1969) (23)
Recombination kinetics: Langevin dynamics with a space dependent friction coefficient (1981) (22)
A THEORY FOR THE RATE CONSTANT OF A DISSOCIATIVE PROTON-COUPLED ELECTRON-TRANSFER REACTION (1999) (22)
Vibrational relaxation in fluids: A many body scattering formalism (1987) (22)
Computational Simulation Strategies for Analysis of Multisubunit RNA Polymerases (2013) (21)
Simulation of Proton Transfer Reaction Rates: The Role of Solvent Electronic Polarization (1997) (21)
The ergodic properties of an impurity in a harmonic oscillator chain (1971) (21)
Concentration‐dependent fluorescence quenching and electron scavenging in liquids (1985) (20)
Kinetic theory derivation of a pair configuration space diffusion equation (1978) (20)
Global nonlinear sensitivity analysis using walsh functions (1981) (20)
A molecular dynamics study comparing a wild‐type with a multiple drug resistant HIV protease: Differences in flap and aspartate 25 cavity dimensions (2007) (20)
Solvent dynamical effects on nonadiabatic electron transfer reactions at low temperature (1989) (18)
Microscopic theory of condensed phase chemical reactions. I. Pair phase space kinetic equation (1980) (18)
Solvent dynamical effects on bond‐breaking electron transfer reactions (1994) (17)
Control of tunneling processes with an external field in a four-level system: an analytic approach (1997) (17)
Hamiltonian and distance replica exchange method studies of Met-enkephalin. (2007) (17)
INTERACTION OF ESCHERICHIA COLI RIBOSOMAL RIBONUCLEIC ACID WITH SYNTHETIC POLYNUCLEOTIDES. SEDIMENTATION PROPERTIES, AND THERMAL STABILITY AS MEASURED BY FLUROESCENCE POLARIZATION. (1965) (17)
Diffusion-influenced reactions (1986) (17)
Excess dielectron in an ionic liquid as a dynamic bipolaron. (2013) (16)
Exploration on regulating factors for proton transfer along hydrogen-bonded water chains. (2007) (16)
A projection operator approach to a dissipative two-level system (1991) (16)
Dihedral angle entropy measures for intrinsically disordered proteins. (2015) (16)
A mean-field theory of a localized excess electron in a polar fluid (1993) (16)
Modification of tunneling dynamics by the application of random external fields (1994) (15)
Control of tunneling reactions with an external field in a four-level system: A general Redfield approach (1996) (15)
Kinetic theory of the hydrodynamic interaction between two particles (1981) (15)
Anisotropic dynamical effects on two‐dimensional potential energy surface reactions: Bond breaking electron transfer reactions (1996) (14)
Structural character and energetics of tyrosyl radical formation by electron/proton transfers of a covalently linked histidine-tyrosine: a model for cytochrome C oxidase. (2005) (14)
Solvation of excess electrons in LiF ionic pair matrix: evidence for a solvated dielectron from ab initio molecular dynamics simulations and calculations. (2008) (14)
Contribution of long-range Coulomb interactions to bimolecular luminescence quenching reactions (1991) (14)
Molecular Dynamics Simulations of Prostaglandin Endoperoxide H Synthase-1. Role of Water and the Mechanism of Compound I Formation from Hydrogen Peroxide (2002) (14)
Microscopic theory of condensed phase chemical reactions. II. Configuration space equations (1980) (13)
A mean‐field theory of a localized excess electron in a classical fluid (1993) (13)
Exploration of the biological micro-surrounding effect on the excited states of the size-expanded fluorescent base x-cytosine in DNA. (2010) (13)
Vibrational relaxation in fluids: Calculations based on a many-body scattering formalism (1987) (13)
Paracyclophane phenols and derivatives. I. Synthesis and pKA values of 4-hydroxy- and 4-amino[2.2]paracyclophane (1967) (12)
Prostaglandin Endoperoxide H Synthases: Peroxidase Hydroperoxide Specificity and Cyclooxygenase Activation (2007) (11)
SIMULATION OF EXCITED STATE PROTON TRANSFER REACTION KINETICS (1999) (11)
Hamiltonian replica exchange method studies of a leucine zipper dimer. (2009) (11)
A combined ONIOM quantum chemical-molecular dynamics study of zinc-uracil bond breaking in yeast cytosine deaminase. (2006) (11)
Histidine 386 and Its Role in Cyclooxygenase and Peroxidase Catalysis by Prostaglandin-endoperoxide H Synthases* (2003) (11)
Effective medium theory of rate processes among stationary reactive sinks with the radiation boundary condition (1983) (11)
On the validity of stochastic rate equations in finite systems with finite-strength interactions (1972) (11)
Generating Intrinsically Disordered Protein Conformational Ensembles from a Database of Ramachandran Space Pair Residue Probabilities Using a Markov Chain. (2018) (11)
Solvation and evolution dynamics of an excess electron in supercritical CO2. (2012) (11)
On the separation of static and dynamic solvent effects for electron transfer reactions (1992) (10)
Concentration dependent fluorescence quenching with ionic reactants (1987) (10)
Proton character of the peptide unit in the Ca2+-binding sites of calcium pump. (2006) (10)
Effect of metal ions on radical type and proton‐coupled electron transfer channel: σ‐Radical vs π‐radical and σ‐channel vs π‐channel in the imide units (2009) (9)
Remarkable metal counterion effect on the internucleotide J-couplings and chemical shifts of the N-H...N hydrogen bonds in the W-C base pairs. (2008) (9)
Dynamical solvent effects in inverted region electron transfer (1993) (9)
Effects of Donors and Acceptors on the Energetics and Mechanism of Proton, Hydrogen, and Hydride Release from Imidazole (2004) (9)
Time autocorrelation functions for harmonic solids from Gaussian quadratures (1974) (9)
Theoretical prediction of the p53 gene mutagenic mechanism induced by trans-4-hydroxy-2-nonenal. (2007) (9)
A hamiltonian replica exchange method for building protein-protein interfaces applied to a leucine zipper. (2011) (9)
Electron bridging dihydrogen bond in the imidazole-contained anion derivatives. (2006) (9)
Hinge action versus grip in translocation by RNA polymerase (2017) (8)
Dynamic and ergodic properties of an impurity in a harmonic-oscillator chain (1972) (8)
Relaxation in charge-transfer systems with very large tunnel splitting: A semiclassical stochastic approach (2000) (8)
Diffusion of interacting Brownian particles in a fluid with fixed macroparticles (1983) (8)
An enhanced molecular dynamics study of HPPK-ATP conformation space exploration and ATP binding to HPPK. (2009) (8)
Equilibrium, dynamic, and trapping properties of an excess electron in dense helium (1991) (8)
The mutual diffusion coefficient of a fluid in the presence of macroparticles (1984) (7)
Simulation of the frequency-dependent dielectric constant of a composite material (1989) (7)
On the role of solvent electronic polarization in charge transfer reactions (1995) (7)
Conformational transition in signal transduction: metastable states and transition pathways in the activation of a signaling protein. (2015) (7)
Bending Vibration-Governed Solvation Dynamics of an Excess Electron in Liquid Acetonitrile Revealed by Ab Initio Molecular Dynamics Simulation. (2013) (7)
An imaginary energy method‐based formulation of a quantum rate theory (1995) (7)
Glucose-Promoted Localization Dynamics of Excess Electrons in Aqueous Glucose Solution Revealed by Ab Initio Molecular Dynamics Simulation. (2014) (7)
Strong external field effects on electronic dephasing of molecular transitions in condensed media (1999) (6)
A stochastic theory of translational correlation functions in gases and liquids (1977) (6)
Transition paths of Met-enkephalin from Markov state modeling of a molecular dynamics trajectory. (2014) (6)
Hamiltonian replica exchange method study of Escherichia coli and Yersinia pestis HPPK. (2009) (6)
Molecular morphology of polyethylene determined by NMR (1978) (6)
Simulations of temperature and salt concentration effects on bZIP, a basic region leucine zipper. (2012) (6)
Reweighting ensemble probabilities with experimental histogram data constraints using a maximum entropy principle. (2018) (6)
Application of nonlinear sensitivity analysis to enzyme mechanisms (1981) (5)
A targeted reweighting method for accelerating the exploration of high-dimensional configuration space. (2005) (5)
Exploration of the Ca2+ interaction modes of the nifedipine calcium channel antagonist. (2007) (5)
Theoretical prediction of size‐expansion effect on the C8‐site activity in the modified guanine‐cytosine analogs (2009) (5)
Conformational transition of response regulator RR468 in a two-component system signal transduction process. (2014) (5)
Ca2+ selectivity of the sarcoplasmic reticulum Ca2+-ATPase at the enzyme-water interface and in the Ca2+ entrance channel. (2007) (5)
A molecular dynamics study of the ligand release path in yeast cytosine deaminase. (2007) (5)
Effective diffusion coefficient of a two-phase material (1987) (5)
Variance of a potential of mean force obtained using the weighted histogram analysis method. (2013) (4)
Solvent influenced nonadiabatic transitions: A classical kinetic theory (1988) (4)
External-field effects on molecular electronic transitions in charge-transfer systems (1998) (4)
Proton-Coupled Electron Transfer Reactions: A Theoretical Approach (2004) (4)
Path-integral approach to a semiclassical stochastic description of quantum dissipative systems (2001) (4)
THE EFFECT OF A STRONG EXTERNAL FIELD ON THE ELECTRONIC DEPHASING OF A SOLUTE THAT IS STRONGLY COUPLED TO A SOLVENT (1999) (4)
Peroxidase site of prostaglandin endoperoxide H synthase-1: Docking and molecular dynamics studies with a prostaglandin endoperoxide analog (2004) (4)
Diffusion-controlled reactions with ellipsoids: effective medium theory (1985) (4)
Comparison between quantum and approximate semiclassical dynamics of an externally driven spin-harmonic oscillator system (2000) (4)
Ferreting out correlations from trajectory data. (2011) (4)
Factors determining the deriving force of DNA formation: geometrical differences of base pairs, dehydration of bases, and the arginine assisting. (2007) (4)
Hydrodynamics of a Suspension of Nondilute Stationary Spheres (1982) (4)
Mechanism of dihydroneopterin aldolase: a molecular dynamics study of the apo enzyme and its product complex. (2006) (3)
Simulations of potentials of mean force for separating a leucine zipper dimer and the basic region of a basic region leucine zipper dimer. (2014) (3)
Generating intrinsically disordered protein conformational ensembles from a Markov chain. (2018) (3)
The effect of inhomogeneous broadening on optical strong field spectroscopy (2000) (3)
A temperature-dependent Hartree approach for excess proton transport in hydrogen-bonded chains (2004) (3)
Hydration effect on interaction mode between glutamic acid and Ca2+ and its biochemical implication: a theoretical exploration (2006) (2)
Conformational Ensembles Exhibit Extensive Molecular Recognition Features (2018) (2)
How many atoms are required to characterize accurately trajectory fluctuations of a protein? (2010) (2)
Entropy Production in Canonically Invariant Systems (1967) (2)
Machine learning can be used to distinguish protein families and generate new proteins belonging to those families. (2019) (1)
Diffusion-controlled reactions among stationary sinks (1983) (1)
10 How is fidelity maintained in nucleic acids? Two tales in DNA repair and DNA transcription from computer simulations (2015) (1)
Book review:Rotational Brownian motion and dielectric theory (1982) (0)
Molecular Dynamics of Oxazole Yellow Dye in its Ground and First Excited Electronic States in Solution and when Intercalated in dsDNA. (2017) (0)
Advances in liquid crystals. Volume one (Brown, Glenn H., ed.) (1977) (0)
Computational Studies: Proton/Water Coupling to Metals in Biological Reaction Mechanisms (2009) (0)
Three Variations on Variational Autoencoders (2022) (0)
Erratum: Diffusion of interacting Brownian particles in a fluid with fixed macroparticles (The Journal of Chemical Physics (1983) 79 (3911)) (1984) (0)
For cleaner air [4] (1968) (0)
Equivalence of the Projection-Operator, Laplace-Transform, and Green's-Function Approaches to Harmonic Lattices (1973) (0)
A Trigger Sequence in a Leucine Zipper Aids its Dimerization; Simulation Results (2017) (0)
Erratum: Diffusion of interacting Brownian particles in a fluid with fixed macroparticles [J. Chem. Phys. 79, 3911 (1983)] (1984) (0)
Equations of motion for rotational motion in liquids (1975) (0)
Checkpoints controlled by PCNA , DNA and ATP direct the timing and order of events in the clamp loading mechanism (2015) (0)
A maximum entropy principle approach to a joint probability model for sequences with known neighbor and next neighbor pair probabilities (2020) (0)
[Synthesis of poly U by RNA polymerase with octoadenylic acid (hepta adenylyl-(3',5')-adenosine) as a template]. (1967) (0)
DIFFUSION IN SPHERE, ROD AND POLYMER SUSPENSIONS. (1985) (0)

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What Schools Are Affiliated With Robert I. Cukier?

Robert I. Cukier is affiliated with the following schools:

Shandong University
University of California, Berkeley
Stanford University
Michigan State University