Robert D. Finn

Q: What Schools Are Affiliated With Robert D. Finn

Robert D. Finn is affiliated with the following schools: University of California, Berkeley, Imperial College London, University of Dundee, Stanford University, Northumbria University, Sapienza University of Rome

Robert D. Finn's AcademicInfluence.com Rankings

Robert D. Finn

Computer Science

#5710

World Rank

#6029

Historical Rank

Computational Linguistics

#859

World Rank

#872

Historical Rank

Machine Learning

#1614

World Rank

#1636

Historical Rank

Artificial Intelligence

#1849

World Rank

#1881

Historical Rank

computer-science Degrees

Download Badge

Computer Science

Robert D. Finn's Degrees

PhD Computer Science University of California, Berkeley
Masters Computer Science Stanford University

Similar Degrees You Can Earn

Why Is Robert D. Finn Influential?

(Suggest an Edit or Addition)

(See a Problem?)

Robert D. Finn's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Pfam: the protein families database (2013) (12454)
The Pfam protein families database (2005) (7519)
The Pfam protein families database: towards a more sustainable future (2015) (4710)
HMMER web server: interactive sequence similarity searching (2011) (3963)
The EMBL-EBI search and sequence analysis tools APIs in 2019 (2019) (3260)
The Pfam protein families database in 2019 (2018) (3247)
The Pfam protein families database (2004) (2565)
Pfam: clans, web tools and services (2005) (2262)
InterPro: the integrative protein signature database (2008) (1850)
Pfam: The protein families database in 2021 (2020) (1725)
The Gene Ontology resource: enriching a GOld mine (2020) (1508)
The Gene Ontology Resource: 20 years and still GOing strong (2019) (1467)
InterPro in 2017—beyond protein family and domain annotations (2016) (1217)
The InterPro protein families database: the classification resource after 15 years (2014) (1186)
InterPro in 2019: improving coverage, classification and access to protein sequence annotations (2018) (1101)
InterPro in 2011: new developments in the family and domain prediction database (2011) (1100)
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea (2017) (990)
HMMER web server: 2018 update (2018) (989)
Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions (2013) (925)
The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database (2017) (906)
Rfam 12.0: updates to the RNA families database (2014) (895)
Rfam: updates to the RNA families database (2008) (861)
The InterPro protein families and domains database: 20 years on (2020) (858)
HMMER web server: 2015 update (2015) (721)
Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families (2017) (719)
A new genomic blueprint of the human gut microbiota (2019) (715)
Twenty years of the MEROPS database of proteolytic enzymes, their substrates and inhibitors (2015) (587)
New developments in the InterPro database (2007) (542)
Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins (1999) (532)
Rfam: Wikipedia, clans and the “decimal” release (2010) (413)
The Dfam database of repetitive DNA families (2015) (410)
Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species (2017) (402)
A unified catalog of 204,938 reference genomes from the human gut microbiome (2020) (386)
A human gut bacterial genome and culture collection for improved metagenomic analyses (2019) (324)
iPfam: visualization of protein?Cprotein interactions in PDB at domain and amino acid resolutions (2005) (323)
MGnify: the microbiome analysis resource in 2020 (2019) (307)
The Pfam protein families database (2009) (296)
Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models (2014) (280)
Rfam 14: expanded coverage of metagenomic, viral and microRNA families (2020) (265)
Non‐Coding RNA Analysis Using the Rfam Database (2018) (221)
Microbial abundance, activity and population genomic profiling with mOTUs2 (2019) (218)
The PASTA domain: a β-lactam-binding domain (2002) (215)
Massive expansion of human gut bacteriophage diversity (2020) (206)
The Pfam protein families database. (2004) (204)
Dfam: a database of repetitive DNA based on profile hidden Markov models (2012) (202)
DUFs: families in search of function (2010) (193)
Predicting active site residue annotations in the Pfam database (2007) (170)
RNAcentral: a hub of information for non-coding RNA sequences (2018) (164)
EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies (2017) (162)
iPfam: a database of protein family and domain interactions found in the Protein Data Bank (2013) (144)
Present and future potential of plant-derived products to control arthropods of veterinary and medical significance (2014) (132)
Should the poultry red mite Dermanyssus gallinae be of wider concern for veterinary and medical science? (2015) (132)
Pfam 10 years on: 10 000 families and still growing (2008) (128)
The European Bioinformatics Institute in 2016: Data growth and integration (2015) (126)
Cache Domains That are Homologous to, but Different from PAS Domains Comprise the Largest Superfamily of Extracellular Sensors in Prokaryotes (2016) (118)
Integrating biological data – the Distributed Annotation System (2008) (113)
RNAcentral: an international database of ncRNA sequences (2014) (108)
NADPH–Cytochrome P450 Oxidoreductase: Roles in Physiology, Pharmacology, and Toxicology (2013) (106)
EBI metagenomics in 2016 - an expanding and evolving resource for the analysis and archiving of metagenomic data (2015) (105)
Representative Proteomes: A Stable, Scalable and Unbiased Proteome Set for Sequence Analysis and Functional Annotation (2011) (98)
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research (2020) (96)
RNAcentral: a comprehensive database of non-coding RNA sequences (2016) (95)
Defining the in Vivo Role for Cytochrome b5 in Cytochrome P450 Function through the Conditional Hepatic Deletion of Microsomal Cytochrome b5*S⃞ (2008) (95)
The HMMER Web Server for Protein Sequence Similarity Search (2017) (91)
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases (2020) (91)
The PASTA domain: a beta-lactam-binding domain. (2002) (88)
Integrating sequence and structural biology with DAS (2007) (86)
Unsaturated fatty acid regulation of cytochrome P450 expression via a CAR-dependent pathway (2008) (84)
Reporting guidelines for human microbiome research: the STORMS checklist (2021) (82)
Benchmarking taxonomic assignments based on 16S rRNA gene profiling of the microbiota from commonly sampled environments (2018) (81)
Deletion of Microsomal Cytochrome b5 Profoundly Affects Hepatic and Extrahepatic Drug Metabolism (2010) (78)
Phospholipid scramblases and Tubby-like proteins belong to a new superfamily of membrane tethered transcription factors (2008) (75)
Identifying Protein Domains with the Pfam Database (2008) (72)
HPMCD: the database of human microbial communities from metagenomic datasets and microbial reference genomes (2015) (59)
Clustered Coding Variants in the Glutamate Receptor Complexes of Individuals with Schizophrenia and Bipolar Disorder (2011) (57)
COVID-19 pandemic reveals the peril of ignoring metadata standards (2020) (56)
Identifying Protein Domains with the Pfam Database (2003) (48)
Making your database available through Wikipedia: the pros and cons (2011) (45)
SCOOP: a simple method for identification of novel protein superfamily relationships (2007) (45)
Determination of the redox potentials and electron transfer properties of the FAD- and FMN-binding domains of the human oxidoreductase NR1. (2003) (45)
Conditional Deletion of Cytochrome P450 Oxidoreductase in the Liver and Gastrointestinal Tract: A New Model for Studying the Functions of the P450 System (2007) (44)
Pfam: a domain-centric method for analyzing proteins and proteomes. (2007) (43)
Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics (2020) (43)
Correction: Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea (2018) (43)
Toward unrestricted use of public genomic data (2019) (40)
The metagenomic data life-cycle: standards and best practices (2017) (40)
ProServer: a simple, extensible Perl DAS server (2007) (39)
Modifier Effects between Regulatory and Protein-Coding Variation (2008) (37)
The second paradigm for activation of transcription. (2005) (37)
A catalogue of 1,167 genomes from the human gut archaeome (2021) (35)
Phylogenomics of expanding uncultured environmental Tenericutes provides insights into their pathogenicity and evolutionary relationship with Bacilli (2020) (35)
Bacterial Pleckstrin Homology Domains: A Prokaryotic Origin for the PH Domain (2010) (34)
Integrating cultivation and metagenomics for a multi-kingdom view of skin microbiome diversity and functions (2021) (33)
Cytochrome b5 null mouse: a new model for studying inherited skin disorders and the role of unsaturated fatty acids in normal homeostasis (2010) (32)
Ensembl Genomes 2022: an expanding genome resource for non-vertebrates (2021) (32)
Experience using web services for biological sequence analysis (2008) (31)
Correction: Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea (2018) (31)
Corrigendum: ''RNAcentral : a hub of information for non-coding RNA sequences'' [Nucleic acids research, 47 (2019) D1, p. D221-D229] (2019) (30)
R2DT is a framework for predicting and visualising RNA secondary structure using templates (2021) (30)
The challenge of increasing Pfam coverage of the human proteome (2013) (30)
Pyrethroid activity-based probes for profiling cytochrome P450 activities associated with insecticide interactions (2013) (30)
Estimating the quality of eukaryotic genomes recovered from metagenomic analysis with EukCC (2020) (30)
A unified sequence catalogue of over 280,000 genomes obtained from the human gut microbiome (2019) (30)
Unifying the known and unknown microbial coding sequence space (2020) (28)
Identifying accurate metagenome and amplicon software via a meta-analysis of sequence to taxonomy benchmarking studies (2017) (27)
Genome properties in 2019: a new companion database to InterPro for the inference of complete functional attributes (2018) (26)
Microbial community drivers of PK/NRP gene diversity in selected global soils (2019) (23)
NADPH – Cytochrome P 450 Oxidoreductase : Roles in Physiology , Pharmacology , and Toxicology (2012) (22)
GO annotation in InterPro: why stability does not indicate accuracy in a sea of changing annotations (2016) (21)
A Role for Cytochrome b5 in the In Vivo Disposition of Anticancer and Cytochrome P450 Probe Drugs in Mice (2014) (21)
DASMI: exchanging, annotating and assessing molecular interaction data (2009) (19)
Predicted Input of Uncultured Fungal Symbionts to a Lichen Symbiosis from Metagenome-Assembled Genomes (2021) (19)
The Distributed Annotation System for Integration of Biological Data (2006) (18)
Microbiota Characterization of Agricultural Green Waste-Based Suppressive Composts Using Omics and Classic Approaches (2020) (16)
A Vaccinology Approach to the Identification and Characterization of Dermanyssus gallinae Candidate Protective Antigens for the Control of Poultry Red Mite Infestations (2019) (15)
Key challenges for the creation and maintenance of specialist protein resources (2015) (15)
Estimating the quality of eukaryotic genomes recovered from metagenomic analysis with EukCC (2019) (14)
RNAcentral: a hub of information for non-coding RNA sequences (2018) (14)
InterPro in 2011: new developments in the family and domain prediction database (2012) (14)
Eleven quick tips to build a usable REST API for life sciences (2018) (14)
Rainbow tags: a visual tag system for recombinant protein expression and purification. (2005) (14)
TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations (2018) (14)
Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference (2012) (12)
Dermanyssus gallinae and chicken egg production: impact, management, and a predicted compatibility matrix for integrated approaches (2020) (12)
The crystal structure of a bacterial Sufu-like protein defines a novel group of bacterial proteins that are similar to the N-terminal domain of human Sufu (2010) (12)
Recovering prokaryotic genomes from host-associated, short-read shotgun metagenomic sequencing data (2021) (11)
Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation (2019) (11)
ELIXIR pilot action: Marine metagenomics – towards a domain specific set of sustainable services (2017) (10)
Use of liquid chromatography for separation and determination of carrier species associated with the synthesis of no carrier-added11C-labelled compounds determination of the specific activity of {11C} urea (1985) (10)
An inter-laboratory study to investigate the impact of the bioinformatics component on microbiome analysis using mock communities (2021) (10)
Isolation of the monooxygenase complex from Rhipicephalus (Boophilus) microplus - clues to understanding acaricide resistance. (2016) (9)
The structure of pyogenecin immunity protein, a novel bacteriocin-like immunity protein from Streptococcus pyogenes (2009) (9)
Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat (2015) (8)
The complexity, challenges and benefits of comparing two transporter classification systems in TCDB and Pfam (2015) (8)
Metaproteomics characterization of the alphaproteobacteria microbiome in different developmental and feeding stages of the poultry red mite Dermanyssus gallinae (De Geer, 1778) (2019) (7)
MGnify: the microbiome sequence data analysis resource in 2023 (2022) (6)
The structure of BVU2987 from Bacteroides vulgatus reveals a superfamily of bacterial periplasmic proteins with possible inhibitory function (2010) (6)
Light into the darkness: Unifying the known and unknown coding sequence space in microbiome analyses (2020) (6)
Determination of Escherichia coli RNA polymerase structure by single particle cryoelectron microscopy. (2003) (5)
Conformational changes of Escherichia coli sigma54-RNA-polymerase upon closed-promoter complex formation. (2005) (5)
The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data (2020) (5)
Redefining a new genomic blueprint of the human gut microbiota (2019) (5)
Of mites and men: Preliminary evidence for increasing incidence of avian ectoparasitosis in humans and support for its potential threat to medical health (2013) (5)
A comprehensive analysis of the global human gut archaeome from a thousand genome catalogue (2020) (5)
METdb: A GENOMIC REFERENCE DATABASE FOR MARINE SPECIES (2020) (4)
Cytochrome P450s in Anopheles gambiae (Diptera: Culicidae) and Insecticide Resistance in Africa: A Mini Review (2017) (4)
Unifying the global coding sequence space enables the study of genes with unknown function across biomes (2020) (4)
R2DT: computational framework for template-based RNA secondary structure visualisation across non-coding RNA types (2020) (4)
Consent insufficient for data release—Response (2019) (4)
Dermanyssus gallinae and poultry production: Impact, management, and a predicted compatibility matrix for integrated approaches (2014) (4)
Identification of a functionally impaired allele of human novel oxidoreductase 1 (NDOR1), NDOR1*1 (2005) (4)
A mouse model of occult intestinal colonization demonstrating antibiotic-induced outgrowth of carbapenem-resistant Enterobacteriaceae (2021) (3)
The poultry red mite Dermanyssus gallinae: Developing novel management solutions for a complicated and neglected pest (2009) (3)
Defining the in vivo role for cytochrome b5 in cytochrome P450 mediated drug metabolism through the global deletion of cytochrome b5 (2008) (3)
Two Pfam protein families characterized by a crystal structure of protein lpg2210 from Legionella pneumophila (2013) (3)
The C-terminal 12 amino acids of sigma(N) are required for structure and function. (1999) (3)
Exploring Non‐Coding RNAs in RNAcentral (2020) (2)
3DPatch: fast 3D structure visualization with residue conservation (2018) (2)
Going Molecular: Sequence-based spatiotemporal biodiversity evidence in GBIF (2019) (2)
VIRify: an integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models (2022) (2)
The first structure in a family of peptidase inhibitors reveals an unusual Ig-like fold (2013) (2)
Repeats in Pfam (2020) (2)
Slim-o-matic: a Semi-Automated Way to Generate Gene Ontology Slims (2016) (2)
Metagenomics approach for Polymyxa betae genome assembly enables comparative analysis towards deciphering the intracellular parasitic lifestyle of the plasmodiophorids. (2021) (2)
A machine learning framework for discovery and enrichment of metagenomics metadata from open access publications (2022) (2)
ELIXIR Pilot: Marine metagenomics (2016) (2)
Evidence for a core set of microbial lichen symbionts from a global survey of metagenomes (2023) (2)
Publisher Correction: A catalogue of 1,167 genomes from the human gut archaeome (2022) (2)
InterProScan: Protein sequence analysis and classification (2017) (1)
InterProScan 5: Large scale protein function classification (2016) (1)
Erratum to: Predicted Input of Uncultured Fungal Symbionts to a Lichen Symbiosis from Metagenome-Assembled Genomes (2021) (1)
Two Pfam protein families characterized by a crystal structure of protein lpg2210 from Legionella pneumophila (2013) (1)
Pfam and MGnify: using metagenomics to improve the Pfam coverage of microbial sequence space (2019) (1)
Structure and computational analysis of a novel protein with metallopeptidase-like and circularly permuted winged-helix-turn-helix domains reveals a possible role in modified polysaccharide biosynthesis (2014) (1)
On the way to research objects for environmental genomics (or metagenomics) (2018) (1)
The first structure in a family of peptidase inhibitors reveals an unusual Ig-like fold. (2013) (1)
A Role for Cytochrome b 5 in the In Vivo Disposition of Anticancer and Cytochrome P 450 Probe Drugs in Mice s (2013) (1)
A mouse model of occult intestinal colonization demonstrating antibiotic-induced outgrowth of carbapenem-resistant Enterobacteriaceae (2022) (1)
Microbial abundance, activity and population genomic profiling with mOTUs2 (2019) (1)
Staphylococcal diversity in atopic dermatitis from an individual to a global scale. (2023) (1)
Mechanism and regulation of electron transfer in cytochrome P450 redox systems (2003) (0)
ELIXIR Marine Metagenomics Use Case: Marine metagenomic infrastructure as a driver for research and industrial innovation (2017) (0)
200 billion sequences and counting: analysis, discovery and exploration of datasets with EBI Metagenomics (2016) (0)
MGnify Genomes: a resource for biome-specific microbial genome catalogues. (2023) (0)
Broadening Pfam Protein Sequence Annotations (2009) (0)
Novel targeting tools for control of disease-borne vectors of medical and veterinary significance (2013) (0)
Do natural marine-based products hold potential as acaricides for the poultry red mite Dermanyssus gallinae? (2013) (0)
The emergence of Dermanyssus gallinae as an arthropod pest in urban context and the "One Health" approach (2017) (0)
Sequences, samples, specimens, and citizens: crosslinking the global biodiversity data (2019) (0)
Literature and its referents : Analyzing PubMed citations across PFAM (2002) (0)
SHBG May Explain Coffee-Diabetes Link (2010) (0)
Pfam families and clans: maximizing biocuration effort (2017) (0)
Navigating bacterial taxonomy in a world of unchartered microbial organisms. (2021) (0)
Exogenous lipids mediate the elevated hepatic cytochrome P450 protein expression in the hepatic POR null mouse via a CAR-dependent pathway (2006) (0)
Databases and ontologies ProServer : a simple , extensible Perl DAS server (2007) (0)
Controlled and conditional deletion of Cytochrome P450 Reductase in mouse liver and other tissues (2004) (0)
EBI’s Metagenomics Pipeline: Moving towards cloud computing (2016) (0)
Identification of a novel pyrethroid metabolising Cytochrome P450 from the tick: Rhipicephalus (Boophilus) microplus (2013) (0)
Structure and computational analysis of a novel protein with metallopeptidase-like and circularly permuted winged-helix-turn-helix domains reveals a possible role in modified polysaccharide biosynthesis (2014) (0)
Phylogenomics of expanding uncultured environmental Tenericutes provides insights into their pathogenicity and evolutionary relationship with Bacilli (2020) (0)
DMD055277 70..77 (2013) (0)
Integration and standardisation of intrinsically disordered protein data (2019) (0)
functional-dark-side/agnostos-wf: (2020) (0)
Potential impact of the poultry red mite on health and welfare of companion and livestock animals (2013) (0)
Integrating cultivation and metagenomics for a multi-kingdom view of skin microbiome diversity and functions (2021) (0)
Dissection of Human NR1 into distinct functional domains (2002) (0)
Risks, Benefits of BRCA Genetic Testing Weighed (2010) (0)
Annotating the complex cellular orchestration of protein functions using Genome Properties (2019) (0)
Publisher Correction: A catalogue of 1,167 genomes from the human gut archaeome (2022) (0)
A human gut bacterial genome and culture collection for improved metagenomic analyses (2019) (0)
Visualizing protein residue conservation in InterPro and PDBe (2019) (0)
Exploring microbial functional biodiversity at the protein family level—From metagenomic sequence reads to annotated protein clusters (2023) (0)
Integrating Genome3D structural annotations and predicted secondary structures in InterPro 7 (2019) (0)
A new genomic blueprint of the human gut microbiota (2019) (0)
The role of Cytochrome P450s towards the control of ticks and other arthropods (2011) (0)
Screening and Identification of Novel Cytochrome P450s in ticks (2012) (0)
Current control strategies against the poultry red mite Dermanyssus gallinae in Switzerland (2018) (0)
plastiC: A pipeline for recovery and characterization of plastid genomes from metagenomic datasets (2023) (0)
A catalogue of 1,167 genomes from the human gut archaeome (2021) (0)
Screening of global microbiomes implies ecological boundaries impacting the distribution and dissemination of clinically relevant antimicrobial resistance genes (2022) (0)
Residue data and intrinsic disorder: extending InterPro functionality to improve protein sequence annotation (2017) (0)
Microbial community drivers of PK/NRP gene diversity in selected global soils (2019) (0)
Evaluating Cytochrome P450s diversity and functionality within Acari populations (2012) (0)
Biochemical characterisation of Cytochrome P450 oxidoreductase from the cattle tick, Rhipicephalus microplus, highlights potential new acaricide target. (2023) (0)
Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models (2014) (0)
Identification of Novel Cytochrome P450s in the Acari (2012) (0)
Erratum (2011) (0)
COVID-19 pandemic reveals the peril of ignoring metadata standards (2020) (0)
Potential of essential oils in medical and veterinary pest management: efficacy and modes of action (2015) (0)
MetaGT: A pipeline for de novo assembly of metatranscriptomes with the aid of metagenomic data (2022) (0)
The challenge of increasing Pfam coverage of the human proteome (2013) (0)

This paper list is powered by the following services:

What Schools Are Affiliated With Robert D. Finn?

Robert D. Finn is affiliated with the following schools:

Robert D. Finn's Academic­Influence.com Rankings

Robert D. Finn's Degrees

Similar Degrees You Can Earn

Why Is Robert D. Finn Influential?

Robert D. Finn's Published Works

Published Works

What Schools Are Affiliated With Robert D. Finn?

Robert D. Finn's AcademicInfluence.com Rankings