Roger Jones
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Mathematics
Roger Jones 's Degrees
- PhD Mathematics Princeton University
- Masters Mathematics Stanford University
- Bachelors Mathematics University of California, Berkeley
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Why Is Roger Jones Influential?
(Suggest an Edit or Addition)According to Wikipedia, Roger L. Jones is an American mathematician specializing in harmonic analysis and ergodic theory. Biography He obtained a B.S. in mathematics in 1971 from University at Albany, SUNY, and a Ph.D. in mathematics in 1974 from Rutgers University, with thesis Inequalities for the Ergodic Maximal Function written under the direction of Richard Floyd Gundy. He has recently retired from a professorship in mathematics at DePaul University in Chicago. There he taught everything from remedial math to graduate-level courses. During his tenure at DePaul, Roger published numerous research papers in math, was awarded an excellence in teaching award, chaired the DePaul University Mathematics Department, and was awarded National Science Foundation grants related to teaching mathematics. He has also worked with the Chicago Public Schools on improving math instruction.
Roger Jones 's Published Works
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Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Aminoglycoside antibiotics induce bacterial biofilm formation (2005) (1157)
- Human telomeric sequence forms a hybrid-type intramolecular G-quadruplex structure with mixed parallel/antiparallel strands in potassium solution (2006) (965)
- Cyclic [G(2′,5′)pA(3′,5′)p] Is the Metazoan Second Messenger Produced by DNA-Activated Cyclic GMP-AMP Synthase (2013) (706)
- Solution structure of the biologically relevant G-quadruplex element in the human c-MYC promoter. Implications for G-quadruplex stabilization. (2005) (495)
- Structure of the Hybrid-2 type intramolecular human telomeric G-quadruplex in K+ solution: insights into structure polymorphism of the human telomeric sequence (2007) (442)
- Structure-Function Analysis of STING Activation by c[G(2′,5′)pA(3′,5′)p] and Targeting by Antiviral DMXAA (2013) (402)
- An intramolecular G-quadruplex structure with mixed parallel/antiparallel G-strands formed in the human BCL-2 promoter region in solution. (2006) (350)
- Structure of the intramolecular human telomeric G-quadruplex in potassium solution: a novel adenine triple formation (2007) (316)
- NMR solution structure of the major G-quadruplex structure formed in the human BCL2 promoter region (2006) (307)
- Structural basis of RNA folding and recognition in an AMP–RNA aptamer complex (1996) (216)
- A glutamate‐alanine‐leucine (EAL) domain protein of Salmonella controls bacterial survival in mice, antioxidant defence and killing of macrophages: role of cyclic diGMP (2005) (157)
- Structures of HIV-1 RT–DNA complexes before and after incorporation of the anti-AIDS drug tenofovir (2004) (147)
- Formation of 13C-, 15N-, and 18O-labeled guanidinohydantoin from guanosine oxidation with singlet oxygen. Implications for structure and mechanism. (2003) (142)
- Structure of a two-G-tetrad intramolecular G-quadruplex formed by a variant human telomeric sequence in K+ solution: insights into the interconversion of human telomeric G-quadruplex structures (2009) (142)
- Structural basis of HIV-1 resistance to AZT by excision (2010) (115)
- One-flask syntheses of c-di-GMP and the [Rp,Rp] and [Rp,Sp] thiophosphate analogues. (2010) (94)
- Detection of DNA adducts derived from the reactive metabolite of furan, cis-2-butene-1,4-dial. (2006) (89)
- Structural Basis for the Role of the K65R Mutation in HIV-1 Reverse Transcriptase Polymerization, Excision Antagonism, and Tenofovir Resistance* (2009) (88)
- Formation of benzo[a]pyrene diol epoxide-DNA adducts at specific guanines within K-ras and p53 gene sequences: stable isotope-labeling mass spectrometry approach. (2002) (80)
- The influence of the purine 2-amino group on DNA conformation and stability. II: Synthesis and physical characterization of d[CGT(2-NH2)ACG], d[CGU(2-NH2)ACG], and d[CGT(2-NH2)AT(2-NH2)ACG] (1984) (80)
- Structural basis for molecular discrimination by a 3',3'-cGAMP sensing riboswitch. (2015) (75)
- CRISPR-Cas III-A Csm6 CARF Domain Is a Ring Nuclease Triggering Stepwise cA4 Cleavage with ApA>p Formation Terminating RNase Activity. (2019) (67)
- Polymorphism of the signaling molecule c-di-GMP. (2006) (67)
- Interstrand and intrastrand DNA-DNA cross-linking by 1,2,3,4-diepoxybutane: role of stereochemistry. (2005) (63)
- c-di-GMP displays a monovalent metal ion-dependent polymorphism. (2004) (61)
- Differential analogue binding by two classes of c-di-GMP riboswitches. (2011) (59)
- Formation of diastereomeric benzo[a]pyrene diol epoxide-guanine adducts in p53 gene-derived DNA sequences. (2004) (52)
- A new strategy for the protection of deoxyguanosine during oligonucleotide synthesis (1982) (51)
- Bombyx mori single repeat telomeric DMA sequence forms a G-quadruplex capped by base triads (1997) (51)
- Peroxynitrite-induced reactions of synthetic oligo 2'-deoxynucleotides and DNA containing guanine: formation and stability of a 5-guanidino-4-nitroimidazole lesion. (2002) (47)
- Nitrogen-15-labeled oligodeoxynucleotides. 3. Protonation of the adenine N1 in the A.cntdot.C and A.cntdot.G mispairs of the duplexes {d[CG(15N1)AGAATTCCCG]}2 and {d[CGGGAATTC(15N1)ACG]}2 (1991) (47)
- Synthesis of O-6-alkylated deoxyguanosine nucleosides (1982) (45)
- K-ras gene sequence effects on the formation of 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone (NNK)-DNA adducts. (2003) (44)
- Synthesis of 6-substituted 2′-deoxyguanosine derivatives using trifluoroacetic anhydride in pyridine (1990) (42)
- Influence of C-5 substituted cytosine and related nucleoside analogs on the formation of benzo[a]pyrene diol epoxide-dG adducts at CG base pairs of DNA (2011) (41)
- Endogenous 5-methylcytosine protects neighboring guanines from N7 and O6-methylation and O6-pyridyloxobutylation by the tobacco carcinogen 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone. (2004) (40)
- Nitrogen-15 labeled deoxynucleosides. Synthesis of 15N6-and 15N1-deoxyadenosines from deoxyadenosine (1987) (39)
- Use of a 13C Atom To Differentiate Two 15N-Labeled Nucleosides. Syntheses of [15NH2]-Adenosine, [1,NH2-15N2]- and [2-13C-1,NH2-15N2]-Guanosine, and [1,7,NH2-15N3]- and [2-13C-1,7,NH2-15N3]-2‘-Deoxyguanosine (1997) (37)
- Mapping Structurally Defined Guanine Oxidation Products along DNA Duplexes: Influence of Local Sequence Context and Endogenous Cytosine Methylation (2014) (36)
- Stable isotope labeling-mass spectrometry analysis of methyl- and pyridyloxobutyl-guanine adducts of 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone in p53-derived DNA sequences. (2005) (34)
- 6-O-(Pentafluorophenyl)-2'-deoxyguanosine: a versatile synthon for nucleoside and oligonucleotide synthesis (1992) (33)
- One-flask synthesis of dinucleoside tetra- and pentaphosphates. (2006) (30)
- Nitrogen-15-labeled oligodeoxynucleotides. Characterization by 15N NMR of d[CGTACG] containing 15N6- or 15N1-labeled deoxyadenosine (1987) (29)
- Second Messenger cA4 Formation within the Composite Csm1 Palm Pocket of Type III-A CRISPR-Cas Csm Complex and Its Release Path. (2019) (29)
- Use of 13C as an indirect tag in 15N specifically labeled nucleosides. Syntheses of [8-13C-1,7,NH2-15N3]adenosine, -guanosine, and their deoxy analogues. (2003) (28)
- Nitrogen-15-labeled oligodeoxynucleotides. 8. Use of 15N NMR to probe Hoogsteen hydrogen bonding at guanine and adenine N7 atoms of a DNA triplex (1995) (27)
- One-Flask Syntheses of 6-Thioguanosine and 2′-Deoxy-6-Thioguanosine (1991) (27)
- Sequence distribution of acetaldehyde-derived N2-ethyl-dG adducts along duplex DNA. (2007) (26)
- Identification of c-di-GMP derivatives resistant to an EAL domain phosphodiesterase. (2013) (26)
- Nucleic Acid Related Compounds. 5. The Transformation of Formycin and Tubercidin into 2′- and 3′-Deoxynucleosides (1973) (26)
- Nitrogen-15-labeled oligodeoxynucleotides. 5. Use of 15N NMR to probe H-bonding in an O6MeG.cntdot.T base pair (1993) (25)
- Syntheses of [6,7-15N]-Adenosine, [6,7-15N]-2'-Deoxyadenosine, and [7-15N]-Hypoxanthine (1995) (24)
- Evaluation of a chemically defined model for the attachment of 3,4-dichloroaniline to humus (1982) (24)
- H-phosphonate DNA synthesis without amino protection (1992) (24)
- Nitrogen-15-labeled oligodeoxynucleotides. 7. Use of nitrogen-15 NMR to probe hydrogen bonding in an O6MeG.cntdot.C base pair (1993) (24)
- Aminoglycoside complexation with a DNA.RNA hybrid duplex: the thermodynamics of recognition and inhibition of RNA processing enzymes. (2003) (24)
- Differential binding of Mg2+, Zn2+, and Cd2+ at two sites in a hammerhead ribozyme motif, determined by 15N NMR. (2004) (24)
- H-phosphonate oligonucleotide synthesis on a polyethylen glycol/polystyrene copolymer (1991) (23)
- High yield protection of purine ribonucleosides for phosphoramidite RNA synthesis (1997) (23)
- 15N-Multilabeled Adenine and Guanine Nucleosides. Syntheses of [1,3,NH(2)-(15)N(3)]- and [2-(13)C-1,3,NH(2)-(15)N(3)]-Labeled Adenosine, Guanosine, 2'-Deoxyadenosine, and 2'-Deoxyguanosine. (1999) (23)
- Large-scale oligonucleotide synthesis by the H-phosphonate method (1988) (23)
- Synthesis of c-di-GMP analogs with thiourea, urea, carbodiimide, and guanidinium linkages. (2014) (22)
- Specific labeling approaches to guanine and adenine imino and amino proton assignments in the AMP–RNA aptamer complex (1997) (22)
- A universal allyl linker for solid-phase synthesis (1996) (21)
- High-performance liquid chromatography of the oligonucleotides (1981) (21)
- Nitrogen-15-labeled oligodeoxynucleotides. 6. Use of nitrogen-15 NMR to probe binding of netropsin and distamycin to {d[CGCGAATTCGCG]}2 (1993) (20)
- Thiophosphate Analogs of c-di-GMP: Impact on Polymorphism (2009) (19)
- Transient protection. 2. One-flask synthesis of 6-O-[(4-nitrophenyl)ethyl]-2'-deoxyguanosine nucleosides (1986) (19)
- Nitrogen-15-Labeled Oligodeoxynucleotides. 4. Tetraplex Formation of d[G(15N7)GTTTTTGG] and d[T(15N7)GGGT] Monitored by 1H Detected 15N NMR (1992) (19)
- Nitrogen-15-labeled deoxynucleosides. 2. Synthesis of 7-15N-labeled deoxyadenosine, deoxyguanosine, and related deoxynucleosides (1990) (19)
- Drug targeting of HIV-1 RNA.DNA hybrid structures: thermodynamics of recognition and impact on reverse transcriptase-mediated ribonuclease H activity and viral replication. (2004) (19)
- USE OF SILYL ETHERS AS FLUORIDE SCAVENGERS IN RNA SYNTHESIS (1999) (18)
- Nitrogen-15-labeled deoxynucleosides. 4. Synthesis of [1-15N] and [2-15N]-labeled 2'-deoxyguanosines (1991) (16)
- 15N NMR of RNA Fragments Containing Specifically Labeled Tandem GA Pairs (1998) (16)
- Mapping three guanine oxidation products along DNA following exposure to three types of reactive oxygen species (2018) (16)
- Active site contacts in the purine nucleoside phosphorylase--hypoxanthine complex by NMR and ab initio calculations. (2004) (15)
- Synthesis of cyclic dinucleotides by an H-phosphonate method in solution (1996) (15)
- Syntheses of [1,7-15N2]- and [1,7,NH2-15N3]Adenosine and 2‘-Deoxyadenosine via an N1-Alkoxy-Mediated Dimroth Rearrangement (1998) (15)
- Nuclease-Resistant c-di-AMP Derivatives That Differentially Recognize RNA and Protein Receptors. (2016) (15)
- Synthesis and utility of a DNA phosphorylating agent based on 2-(triphenylsilyl)ethanol (1992) (14)
- Nucleic acid related compounds. 24. Transformation of tubercidin 2′,3′-O-orthoacetate into halo, deoxy, epoxide, and unsaturated sugar nucleosides (1977) (14)
- Nucleic Acid Related Compounds, VII. Conversion of Ribonucleoside 2',3'-Ortho Esters Into Deoxy, Epoxy, and Unsaturated Nucleosides, (1973) (13)
- 15N NMR OF A SPECIFICALLY LABELED RNA FRAGMENT CONTAINING INTRAHELICAL GU WOBBLE PAIRS (1997) (13)
- Nucleic acid related compounds. 9. Synthesis of 6-amino-9-(2-deoxy-D-erythro-pent-1-enofuranosyl)purine, the first 1', 2'-unsaturated purine nucleoside (1974) (13)
- Transient silylation of the guanosine O6 and amino groups facilitates N-acylation. (2004) (12)
- Oxidative conversion of N-dimethylformamidine nucleosides to N-cyano nucleosides (1995) (12)
- Crystal structure of a mispaired dodecamer, d(CGAGAATTC(O6Me)GCG)2, containing a carcinogenic O6-methylguanine (1994) (12)
- RNA GG x UU motif binds K+ but not Mg2+. (2005) (10)
- One‐Flask Synthesis of Cyclic Diguanosine Monophosphate (c‐di‐GMP) (2012) (10)
- Synthesis of Guanosine and Deoxyguanosine Phosphoramidites with Cross-Linkable Thioalkyl Tethers for Direct Incorporation into RNA and DNA (2009) (10)
- Nitrogen-15-labeled deoxynucleosides. 3. Synthesis of [3-15N]-2'-deoxyadenosine (1990) (9)
- Modulation of RNA Metal Binding by Flanking Bases: 15N NMR Evaluation of GC, Tandem GU, and Tandem GA Sites (2009) (8)
- Synthesis of AZTpSpCX2ppSA and AZTpSpCX2ppSAZT: hydrolysis-resistant potential inhibitors of the AZT excision reaction of HIV-1 RT. (2007) (8)
- Nitrogen-15-labeled oligodeoxynucleotides. 2. Solvent isotope effects on the chemical shift of the adenine N1 in an A.cntdot.T base pair (1991) (8)
- NUCLEIC ACID RELATED COMPOUNDS. 22. TRANSFORMATION OF RIBONUCLEOSIDE 2′,3′-O-ORTHO ESTERS INTO HALO, DEOXY, AND EPOXY SUGAR NUCLEOSIDES USING ACYL HALIDES. MECHANISM AND STRUCTURE OF PRODUCTS (1977) (8)
- Synthesis of Boranoate, Selenoate, and Thioate Analogs of AZTp(4)A and Ap(4)A. (2009) (7)
- Synthesis of Biotinylated c-di-Gmp And c-di-Amp using Click Conjugation (2013) (7)
- Synthesis of Capped RNA using a DMT Group as a Purification Handle (2014) (5)
- Structure Determination of the Top‐Loop of the Conserved 3′‐Terminal Secondary Structure in the Genome of Flaviviruses (2010) (5)
- 15N NMR OF RNA FRAGMENTS CONTAINING SPECIFICALLY LABELED GU AND GC PAIRS (1998) (5)
- Use of Both Direct and Indirect 13C Tags for Probing Nitrogen Interactions in Hairpin Ribozyme Models by 15N NMR (2004) (4)
- High-Yield Protection of Purine Ribonucleosides for H-Phosphonate RNA Synthesis (1997) (4)
- Synthesis and Characterization of C8 Analogs of c-di-GMP (2011) (3)
- Nucleoside recovery in DNA and RNA synthesis (1999) (3)
- THE INFLUENCE OF THE PURINE 2-AMINO GROUP ON DNA CONFORMATION AND STABILITY - II. SYNTHESIS AND PHYSICAL CHARACTERIZATION OF D(CGT(2-NH2)ACG), D(CGU(2-NH2)ACG), AND D(CGT(2-NH2)AT(2-NH2)ACG) (1984) (2)
- Regioselective 2′‐Silylation of Purine Ribonucleosides for Phosphoramidite RNA Synthesis (2001) (2)
- Synthesis and 15N NMR of d[CGT(15N6)ACG] and d[CGT(CGT)(15N1)ACG] (1987) (2)
- A Universal Allyl Linker for Solid-Phase Synthesis. (1996) (2)
- 6‐O‐(Pentafluorophenyl)‐2′‐deoxyguanosine: A Versatile Synthon for Nucleoside and Oligonucleotide Synthesis. (1993) (2)
- Synthesis of Cyclic Dinucleotides by a H‐Phosphonate Method in Solution. (2010) (1)
- The synthetic utility of adducts of 1,3-dipolarophiles with vinyl phosphonium salts (1970) (1)
- Use of 13C tags with specifically 15N‐labeled DNA and RNA (1999) (1)
- NUCLEIC ACID RELATED COMPOUNDS. 23. TRANSFORMATION OF RIBONUCLEOSIDE 2′,3′-O-ORTHO ESTERS INTO UNSATURATED AND DEOXY SUGAR NUCLEOSIDES VIA ENOL ESTER-SUBSTITUTED IODO INTERMEDIATES (1977) (1)
- Oxidative Conversion of N-Dimethylformamidine Nucleosides to N-Cyano Nucleosides. (1995) (1)
- Synthesis of 6-Substituted 2′-Deoxyguanosine Derivatives Using Trifluoroacetic Anhydride in Pyridine. (1990) (1)
- One-Flask Syntheses of 6-Thioguanosine and 2′-Deoxy-6-thioguanosine. (1992) (1)
- H‐Phosphonate Oligonucleotide Synthesis on a Polyethylene Glycol/ Polystyrene Copolymer. (1992) (0)
- SOLUTION DNA QUADRUPLEX WITH DOUBLE CHAIN REVERSAL LOOP AND TWO DIAGONAL LOOPS CONNECTING GGGG TETRADS FLANKED BY G-(T-T) TRIAD AND T-T-T TRIPLE (2001) (0)
- Editorial: NAR Awards 2012 (2012) (0)
- Preparation of DNA and RNA Fragments Containing Guanine N2‐Thioalkyl Tethers (2023) (0)
- II.G.12 Joint Center for Artificial Photosynthesis: High Throughput Experimentation for Electrocatalyst and Photoabsorber Discovery (2014) (0)
- Human telomere DNA quadruplex structure in K+ solution hybrid-1 form (2007) (0)
- Regioselective 2′‐Silylation of Purine Ribonucleosides for Phosphoramidite RNA Synthesis (2023) (0)
- Biophysical Analysis of Nucleic Acids (2007) (0)
- 1H chemical shift assignments for Bcl2MidG4 (2006) (0)
- Biophysical Analysis of Nucleic Acids (2010) (0)
- Crystal structure of a mispaired dodecamer, d(CGAGAATTC(O{sup 6}Me)GCG){sub 2}, containing a carcinogenic O{sup 6}-methylguanine. (1994) (0)
- Synthesis of Modified Nucleosides (2003) (0)
- Additions and Corrections: Nucleic Acid Related Compounds. 9. The Synthesis of 6-Amino-9-(2-deoxy-d-erythro-pent-1-enofuranosyl)purine, the First 1′,2′-Unsaturated Purine Nucleoside (Journal of Organic Chemistry (1974) 39(1) (113–115) (10.1021/jo00915a031)) (1974) (0)
- Biophysical Analysis of Nucleic Acids (2011) (0)
- Synthesis of Modified Nucleosides (2007) (0)
- Lectin Binding Studies of Buccal Cell Glycoproteins (2009) (0)
- Large-Scale Oligonucleotide Synthesis by the H-Phosphonate Method. (1988) (0)
- Biophysical Analysis of Nucleic Acids (2010) (0)
- Synthesis of Modified Nucleosides (2005) (0)
- SOLUTION STRUCTURE OF A NA+ CATION STABILIZED DNA QUADRUPLEX CONTAINING G.G.G.G AND G.C.G.C TETRADS FORMED BY G-G-G-C REPEATS OBSERVED IN AAV AND HUMAN CHROMOSOME 19, NMR, 8 STRUCTURES (1998) (0)
- H-Phosphonate DNA Synthesis Without Amino Protection. (1993) (0)
- Synthesis of Modified Nucleosides (2008) (0)
- Nitrogen-15-Labeled Deoxynucleosides. Part 4. Synthesis of (1-15N)- and (2-15N)-Labeled 2′-Deoxyguanosines. (1991) (0)
- CRISPR-Cas IIIA Csm 6 CA RF Domain Is a Ring Nuclease Triggering Stepwise cA 4 Cleavage with ApA > p Formation Terminating RNase Activity Graphical (2019) (0)
- Syntheses of Specifically 15N‐Labeled Adenosine and Guanosine (2002) (0)
- Synthesis of modified nucleosides: Introduction (2010) (0)
- Synthesis of Modified Nucleosides (2007) (0)
- Synthesis of Modified Nucleosides (2007) (0)
- Synthesis of Modified Nucleosides (2010) (0)
- Synthesis of Modified Nucleosides (2006) (0)
- Preparation of DNA and RNA Fragments Containing Guanine N2‐Thioalkyl Tethers (2010) (0)
- Synthesis of Modified Nucleosides (2003) (0)
- Transient Protection. Part 2. One-Flask Synthesis of 6-O-[(4-Nitrophenyl)ethyl]- 2′-deoxyguanosine Nucleosides. (1986) (0)
- SOLUTION DNA STRUCTURE CONTAINING (A-A)-T TRIADS INTERDIGITATED BETWEEN A-T BASE PAIRS AND GGGG TETRADS; NMR, 8 STRUCT. (2000) (0)
- LIVING BROOKLYN: INDUSTRIAL REMEDIATION THROUGH WATER (2016) (0)
- DNA G-QUADRUPLEX WITH A*(G*G*G*G)*A HEXAD FORMATION (2000) (0)
- Human telomere DNA quadruplex structure in K+ solution hybrid-2 form (2007) (0)
- A(GGGG)A HEXAD PAIRING ALIGMENT FOR THE D(G-G-A-G-G-A-G) SEQUENCE (2000) (0)
- Trace element abundances in automobile exhaust particulate (1976) (0)
- TOTAL SYNTHESIS OF A BACTERIAL GENE I: CHEMICAL SYNTHESIS OF OLIGONUCLEOTIDES AND USE OF HIGH-PRESSURE LIQUID CHROMATOGRAPHY (1978) (0)
- DNA QUADRUPLEX CONTAINING GGGG TETRADS AND (T.A).A TRIADS, NMR, 8 STRUCTURES (1997) (0)
- Synthesis of Modified Nucleosides (2006) (0)
- One‐Flask Synthesis of Cyclic Diguanosine Monophosphate (c‐di‐GMP) (2023) (0)
- Structures of Wild‐Type and AZT‐Resistant HIV‐1 Reverse Transcriptase Complexed with AZTppppA Yield Insights into the Nucleotide Excision Mechanism (2007) (0)
- Oligodeoxynucleotides as substrates for O/sup 6/-alkylguanine-DNA alkyltransferase (AGT) (1986) (0)
- EXCISION ANTAGONISM , AND TENOFOVIR RESISTANCE (2009) (0)
- Syntheses of Specifically 15N‐Labeled Adenosine and Guanosine (2022) (0)
- Formation of Benzo( a)pyrene Diol Epoxide- Adducts at CG Base Pairs: Effects of C-5 Cytosine Substituents and Related Structural Analogs (2010) (0)
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