Ron Shamir | Academic Influence

Ron Shamir's AcademicInfluence.com Rankings

Ron Shamir

Computer Science

#2645

World Rank

#2766

Historical Rank

Database

#1037

World Rank

#1091

Historical Rank

computer-science Degrees

Ron Shamir

Biology

#2111

World Rank

#3390

Historical Rank

Bioinformatics

#35

World Rank

#35

Historical Rank

Computational Biology

#42

World Rank

#42

Historical Rank

biology Degrees

Download Badge

Computer Science
Biology

Ron Shamir's Degrees

Bachelors Mathematics Tel Aviv University
Masters Computer Science Tel Aviv University
PhD Computer Science Tel Aviv University

Similar Degrees You Can Earn

Why Is Ron Shamir Influential?

(Suggest an Edit or Addition)

According to Wikipedia, Ron Shamir is an Israeli professor of computer science known for his work in graph theory and in computational biology. He holds the Raymond and Beverly Sackler Chair in Bioinformatics, and is the founder and former head of the Edmond J. Safra Center for Bioinformatics at Tel Aviv University.

(See a Problem?)

Ron Shamir's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Clustering gene expression patterns (1999) (1367)
Modelling and analysis of gene regulatory networks (2008) (1067)
Network-based prediction of protein function (2007) (1043)
Discovering statistically significant biclusters in gene expression data (2002) (968)
Dynamic changes in the copy number of pluripotency and cell proliferation genes in human ESCs and iPSCs during reprogramming and time in culture. (2011) (858)
The age of responsibilization: on market-embedded morality (2008) (764)
Quantification of protein half-lives in the budding yeast proteome (2006) (705)
A clustering algorithm based on graph connectivity (2000) (524)
Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data. (2004) (433)
CLICK and EXPANDER: a system for clustering and visualizing gene expression data (2003) (389)
Center CLICK: A Clustering Algorithm with Applications to Gene Expression Analysis (2000) (357)
Cluster graph modification problems (2002) (355)
CLICK: a clustering algorithm with applications to gene expression analysis. (2000) (354)
Regulatory networks define phenotypic classes of human stem cell lines (2008) (352)
Without Borders? Notes on Globalization as a Mobility Regime* (2005) (347)
EXPANDER – an integrative program suite for microarray data analysis (2005) (347)
Genome-wide in silico identification of transcriptional regulators controlling the cell cycle in human cells. (2003) (336)
Identification of functional modules using network topology and high-throughput data (2007) (333)
A global view of pleiotropy and phenotypically derived gene function in yeast (2005) (330)
How prevalent is functional alternative splicing in the human genome? (2004) (329)
A fast algorithm for joint reconstruction of ancestral amino acid sequences. (2000) (311)
Biclustering Algorithms: A Survey (2007) (283)
Conservation and evolvability in regulatory networks: the evolution of ribosomal regulation in yeast. (2005) (273)
Complexity and algorithms for reasoning about time: a graph-theoretic approach (1993) (244)
Faster and simpler algorithm for sorting signed permutations by reversals (1997) (237)
Comprehensive MicroRNA Profiling Reveals a Unique Human Embryonic Stem Cell Signature Dominated by a Single Seed Sequence (2008) (228)
Multi-omic and multi-view clustering algorithms: review and cancer benchmark (2018) (220)
Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data (2004) (217)
Transcription factor and microRNA motif discovery: the Amadeus platform and a compendium of metazoan target sets. (2008) (198)
Complexity classification of some edge modification problems (1999) (191)
The De-Radicalization of Corporate Social Responsibility (2004) (190)
Four Strikes Against Physical Mapping of DNA (1995) (190)
Expander: from expression microarrays to networks and functions (2010) (189)
Algorithmic approaches to clustering gene expression data (2001) (176)
Dissection of Regulatory Networks that Are Altered in Disease via Differential Co-expression (2013) (155)
The median problems for breakpoints are NP-complete (1998) (153)
Faster subtree isomorphism (1997) (149)
Tractability of Parameterized Completion Problems on Chordal, Strongly Chordal, and Proper Interval Graphs (1999) (147)
Between self-regulation and the Alien Tort Claims Act: On the contested concept of corporate social responsibility (2004) (147)
Tag SNP selection in genotype data for maximizing SNP prediction accuracy (2005) (147)
Topology-Free Querying of Protein Interaction Networks (2009) (135)
GERBIL: Genotype resolution and block identification using likelihood. (2005) (131)
On the Complexity of DNA Physical Mapping (1994) (129)
A non-EST-based method for exon-skipping prediction. (2004) (129)
Accurate identification of alternatively spliced exons using support vector machine (2005) (127)
Mind the Gap: The Commodification of Corporate Social Responsibility (2005) (127)
A Faster and Simpler Algorithm for Sorting Signed Permutations by Reversals (1999) (126)
CLICK: A Clustering Algorithm for Gene Expression Analysis (2000) (125)
The canine olfactory subgenome. (2004) (121)
DEGAS: De Novo Discovery of Dysregulated Pathways in Human Diseases (2010) (118)
Identifying functional modules using expression profiles and confidence-scored protein interactions (2009) (117)
The Efficiency of the Simplex Method: A Survey (1987) (117)
Recycler: an algorithm for detecting plasmids from de novo assembly graphs (2016) (109)
"Landmark Cases" and the Reproduction of Legitimacy: The Case of Israel's High Court of Justice (1990) (108)
An algorithm for clustering cDNA fingerprints. (2000) (108)
Pathwidth, Bandwidth, and Completion Problems to Proper Interval Graphs with Small Cliques (1996) (108)
An algorithm for clustering cDNAs for gene expression analysis (1999) (108)
A plasma-membrane E-MAP reveals links of the eisosome with sphingolipid metabolism and endosomal trafficking (2010) (105)
Pathway redundancy and protein essentiality revealed in the Saccharomyces cerevisiae interaction networks (2007) (104)
Multi-omic and multi-view clustering algorithms: review and cancer benchmark (2018) (103)
Scoring clustering solutions by their biological relevance (2003) (102)
Transcription factor/microRNA axis blocks melanoma invasion program by miR-211 targeting NUAK1. (2014) (101)
Suspended in Space: Bedouins under the Law of Israel (1996) (99)
The Degenerate Primer Design Problem (2002) (95)
Towards computational prediction of microRNA function and activity (2010) (95)
Strongly Polynomial Algorithms for the High Multiplicity Scheduling Problem (1991) (92)
NEMO: cancer subtyping by integration of partial multi-omic data (2018) (92)
Dissection of a DNA-damage-induced transcriptional network using a combination of microarrays, RNA interference and computational promoter analysis (2005) (91)
Environmental Stresses Disrupt Telomere Length Homeostasis (2013) (91)
Transcriptional modulation induced by ionizing radiation: p53 remains a central player (2011) (90)
The Degenerate Primer Design Problem: Theory and Applications (2005) (90)
A comparative analysis of transcription factor binding models learned from PBM, HT-SELEX and ChIP data (2014) (89)
A polynomial approximation algorithm for the minimum fill-in problem (1998) (87)
Transcription factor family‐specific DNA shape readout revealed by quantitative specificity models (2017) (85)
Enhancer methylation dynamics contribute to cancer plasticity and patient mortality (2016) (84)
Socially Responsible Private Regulation: World‐Culture or World‐Capitalism? (2011) (82)
Computing Has Changed Biology—Biology Education Must Catch Up (2009) (80)
Functional gene groups are concentrated within chromosomes, among chromosomes and in the nuclear space of the human genome (2014) (79)
Incomplete Directed Perfect Phylogeny (2000) (78)
SPIKE: a database of highly curated human signaling pathways (2010) (78)
Parallel induction of ATM-dependent pro- and antiapoptotic signals in response to ionizing radiation in murine lymphoid tissue (2006) (77)
Integration of Transcriptomics, Proteomics, and MicroRNA Analyses Reveals Novel MicroRNA Regulation of Targets in the Mammalian Inner Ear (2011) (77)
Capitalism, Governance, and Authority: The Case of Corporate Social Responsibility (2010) (75)
A catalog of stability-associated sequence elements in 3' UTRs of yeast mRNAs (2005) (75)
From E-MAPs to module maps: dissecting quantitative genetic interactions using physical interactions (2008) (74)
Detecting Disease-Specific Dysregulated Pathways Via Analysis of Clinical Expression Profiles (2008) (74)
A genome-wide analysis in Saccharomyces cerevisiae demonstrates the influence of chromatin modifiers on transcription (2007) (73)
Refinement and expansion of signaling pathways: the osmotic response network in yeast. (2007) (73)
Computational Molecular Biology (2000) (73)
Analysis of blood-based gene expression in idiopathic Parkinson disease (2017) (72)
A Probabilistic Methodology for Integrating Knowledge and Experiments on Biological Networks (2006) (72)
Tractability of parameterized completion problems on chordal and interval graphs: minimum fill-in and physical mapping (1994) (69)
A Fully Dynamic Algorithm for Recognizing and Representing Proper Interval Graphs (1999) (69)
Cluster analysis and its applications to gene expression data. (2002) (67)
A simpler and faster 1.5-approximation algorithm for sorting by transpositions (2006) (67)
SPIKE – a database, visualization and analysis tool of cellular signaling pathways (2008) (67)
Pediatric onset Crohn's colitis is characterized by genotype‐dependent age‐related susceptibility (2007) (65)
Reduced changes in protein compared to mRNA levels across non-proliferating tissues (2017) (65)
A Block-Free Hidden Markov Model for Genotypes and Its Application to Disease Association (2005) (64)
Integrative analysis of genome-wide experiments in the context of a large high-throughput data compendium (2005) (61)
Two Notes on Genome Rearrangement (2003) (60)
ElemeNT: a computational tool for detecting core promoter elements (2015) (58)
Statistical Learning and Kernel Methods in Bioinformatics (2003) (57)
Chain functions and scoring functions in genetic networks (2003) (57)
The Colonies of Law: Colonialism, Zionism and Law in Early Mandate Palestine (1999) (57)
A randomization test for controlling population stratification in whole-genome association studies. (2007) (54)
Law and Globalization from Below: Corporate social responsibility: a case of hegemony and counter-hegemony (2005) (53)
Faculty of 1000 evaluation for Enhancer redundancy provides phenotypic robustness in mammalian development. (2018) (52)
Large-scale analysis of chromosomal aberrations in cancer karyotypes reveals two distinct paths to aneuploidy (2011) (52)
A fast method for computing high-significance disease association in large population-based studies. (2006) (51)
Parallel Profiling of the Transcriptome, Cistrome, and Epigenome in the Cellular Response to Ionizing Radiation (2014) (50)
GEVALT: An integrated software tool for genotype analysis (2007) (50)
Computational expansion of genetic networks (2001) (49)
FOCS: a novel method for analyzing enhancer and gene activity patterns infers an extensive enhancer–promoter map (2018) (49)
SlimPLS: A Method for Feature Selection in Gene Expression-Based Disease Classification (2009) (48)
Deciphering Transcriptional Regulatory Elements That Encode Specific Cell-Cycle Phasing by Comparative Genomics Analysis (2005) (48)
Minimizing the number of tardy job units under release time constraints (1990) (48)
A simplex variant solving an m times d linear program in O(min(m2, d2) expected number of pivot steps (1987) (47)
Currents in Computational Molecular Biology (2000) (47)
Beyond Neoliberal Governance: The World Social Forum as Subaltern Cosmopolitan Politics and Legality (2005) (47)
Allegro: Analyzing expression and sequence in concert to discover regulatory programs (2009) (46)
A large-scale perspective on stress-induced alterations in resting-state networks (2016) (46)
MicroRNAs are essential for differentiation of the retinal pigmented epithelium and maturation of adjacent photoreceptors (2015) (46)
Torque: topology-free querying of protein interaction networks (2009) (44)
Improving the performance of minimizers and winnowing schemes (2017) (44)
Gene expression signature of human cancer cell lines treated with the ras inhibitor salirasib (S-farnesylthiosalicylic acid). (2007) (44)
Drosophila TRF2 is a preferential core promoter regulator (2014) (44)
An algorithm for the detection and construction of Monge sequences (1989) (44)
Expression and methylation patterns partition luminal-A breast tumors into distinct prognostic subgroups (2016) (43)
Managing Legal Uncertainty: Elite Lawyers in the New Deal (1995) (42)
PlasClass improves plasmid sequence classification (2019) (41)
Improved algorithms for the random cluster graph model (2002) (38)
Tired and misconnected: A breakdown of brain modularity following sleep deprivation (2017) (38)
Modeling and Analysis of Heterogeneous Regulation in Biological Networks (2004) (37)
Maximum likelihood resolution of multi-block genotypes (2004) (36)
Using the kinetics of C-reactive protein response to improve the differential diagnosis between acute bacterial and viral infections (2019) (36)
Designing small universal k-mer hitting sets for improved analysis of high-throughput sequencing (2017) (35)
Evidence of TAF1 dysfunction in peripheral models of X-linked dystonia-parkinsonism (2016) (35)
PrtT-Regulated Proteins Secreted by Aspergillus fumigatus Activate MAPK Signaling in Exposed A549 Lung Cells Leading to Necrotic Cell Death (2011) (34)
A randomized scheme for speeding up algorithms for linear and convex programming problems with high constraints-to-variables ratio (1993) (34)
ATM haplotypes and breast cancer risk in Jewish high-risk women (2006) (34)
Complexity classication of some edge modication problems (1999) (34)
Corporate Social Responsibility: Towards a New Market-Embedded Morality? (2008) (33)
Network-Induced Classification Kernels for Gene Expression Profile Analysis (2012) (33)
Functional genomic delineation of TLR-induced transcriptional networks (2007) (33)
PIVOT: Protein Interacions VisualizatiOn Tool (2004) (32)
Large scale sequencing by hybridization (2001) (32)
Constructing Logical Models of Gene Regulatory Networks by Integrating Transcription Factor-DNA Interactions with Expression Data: An Entropy-Based Approach (2012) (31)
Characterization and algorithms for greedily solvable transportation problems (1990) (31)
On the Complexity of Positional Sequencing by Hybridization (1999) (31)
Bounded Degree Interval Sandwich Problems (1999) (30)
The Domatic Number Problem on Some Perfect Graph Families (1994) (30)
A global view of the selection forces in the evolution of yeast cis-regulation. (2004) (30)
In silico identification of transcriptional regulators associated with c-Myc. (2004) (29)
A Faster Algorithm for RNA Co-folding (2008) (29)
Evolution and Selection in Yeast Promoters: Analyzing the Combined Effect of Diverse Transcription Factor Binding Sites (2008) (29)
Different sets of QTLs influence fitness variation in yeast (2010) (29)
The restriction scaffold problem (2002) (28)
Realizing Interval Graphs with Size and Distance Constraints (1997) (28)
Erratum to: Expression and methylation patterns partition luminal-A breast tumors into distinct prognostic subgroups (2016) (28)
Risk Factors for Perianal Crohn's Disease: The Role of Genotype, Phenotype, and Ethnicity (2007) (28)
Complexity and algorithms for copy-number evolution problems (2017) (28)
Assessment of Algorithms for Inferring Positional Weight Matrix Motifs of Transcription Factor Binding Sites Using Protein Binding Microarray Data (2012) (27)
Integrated analysis of numerous heterogeneous gene expression profiles for detecting robust disease-specific biomarkers and proposing drug targets (2015) (27)
A polynomial algorithm for an integer quadratic non-separable transportation problem (1992) (27)
A fully dynamic algorithm for modular decomposition and recognition of cographs (2004) (27)
The Incomplete Perfect Phylogeny Haplotype Problem (2005) (26)
DEFOG: a practical scheme for deciphering families of genes. (2002) (26)
Constructing module maps for integrated analysis of heterogeneous biological networks (2014) (25)
Compact Universal k-mer Hitting Sets (2016) (25)
Systematic inference of highways of horizontal gene transfer in prokaryotes (2013) (25)
A Note on the Fixed Parameter Tractability of the Gene-Duplication Problem (2011) (24)
PRODIGY: personalized prioritization of driver genes (2018) (24)
Ras inhibits endoplasmic reticulum stress in human cancer cells with amplified Myc (2010) (24)
A Family of Simplex Variants Solving an m × d Linear Program in Expected Number of Pivot Steps Depending on d Only (1986) (24)
Satisfiability Problems on Intervals and Unit Intervals (1997) (24)
Handling long targets and errors in sequencing by hybridization (2002) (24)
Towards accurate imputation of quantitative genetic interactions (2009) (23)
DOMINO: a network‐based active module identification algorithm with reduced rate of false calls (2021) (23)
An O(n3/2sqrt(log n)) Algorithm for Sorting by Reciprocal Translocations (2006) (23)
Fast lossless compression via cascading Bloom filters (2014) (23)
SCAPP: an algorithm for improved plasmid assembly in metagenomes (2020) (23)
Computational Problems in Perfect Phylogeny Haplotyping: Xor-Genotypes and Tag SNPs (2004) (23)
E2F1 identified by promoter and biochemical analysis as a central target of glioblastoma cell‐cycle arrest in response to ras inhibition (2006) (23)
Colonialism's Civilizing Mission: The Case of the Indian Hemp Drug Commission (2001) (22)
Copy-Number Evolution Problems: Complexity and Algorithms (2016) (22)
Algorithms and Complexity for Reasoning about Time (1992) (22)
Minimally perturbing a gene regulatory network to avoid a disease phenotype: the glioma network as a test case (2010) (22)
The MORPH Algorithm: Ranking Candidate Genes for Membership in Arabidopsis and Tomato Pathways[C][W] (2012) (21)
Transcriptional and Proteomic Analysis of the Aspergillus fumigatus ΔprtT Protease-Deficient Mutant (2012) (21)
Evaluation and integration of functional annotation pipelines for newly sequenced organisms: the potato genome as a test case (2014) (21)
Melanoma-Secreted Lysosomes Trigger Monocyte-Derived Dendritic Cell Apoptosis and Limit Cancer Immunotherapy (2020) (20)
Assessing the number of ancestral alternatively spliced exons in the human genome (2006) (20)
Spectrum Alignment: Efficient Resequencing by Hybridization (2000) (20)
Current Flow: The Electrification of Palestine (2013) (19)
The Factor Graph Network Model for Biological Systems (2005) (19)
Detecting Highways of Horizontal Gene Transfer (2010) (19)
Detecting excess radical replacements in phylogenetic trees. (2003) (19)
A computational method for resequencing long DNA targets by universal oligonucleotide arrays (2002) (19)
Sorting Cancer Karyotypes by Elementary Operations (2008) (18)
Integrated microfluidic approach for quantitative high-throughput measurements of transcription factor binding affinities (2015) (18)
Sorting by Translocations Via Reversals Theory (2006) (18)
A note on tolerance graph recognition (2004) (17)
RAP: Accurate and Fast Motif Finding Based on Protein-Binding Microarray Data (2013) (17)
Construction of physical maps from oligonucleotide fingerprints data (1999) (17)
PROMO: an interactive tool for analyzing clinically-labeled multi-omic cancer datasets (2019) (17)
Modeling protein–DNA binding via high-throughput in vitro technologies (2016) (17)
The EXPANDER Integrated Platform for Transcriptome Analysis. (2019) (17)
Governing Gaza: Bureaucracy, Authority, and the Work of Rule, 1917–1967 (2009) (17)
Algorithms for optical mapping (1998) (17)
SELMAP - SELEX affinity landscape MAPping of transcription factor binding sites using integrated microfluidics (2016) (17)
Extracting replicable associations across multiple studies: Empirical Bayes algorithms for controlling the false discovery rate (2016) (17)
Faster pattern matching with character classes using prime number encoding (2009) (16)
Monge and Feasibility Sequences in General Flow Problems (1993) (16)
A Linear-Time Algorithm for the Copy Number Transformation Problem (2017) (16)
Assessing the capabilities of geospatial data to map built structures and evaluate their bushfire threat. (2009) (16)
An O(n log2 n) Algorithm for the Maximum Weighted Tardiness Problem (1989) (16)
Utilizing somatic mutation data from numerous studies for cancer research: proof of concept and applications (2017) (15)
MetaReg: a platform for modeling, analysis and visualization of biological systems using large-scale experimental data (2008) (15)
A randomization scheme for speeding up algorithms for linear and convex quadratic programming proble (1990) (15)
A hierarchical Bayesian model for flexible module discovery in three-way time-series data (2015) (15)
Approximation Algorithms for the Median Problem in the Breakpoint Model (2000) (15)
The maximum subforest problem: approximation and exact algorithms (1998) (15)
Negotiated society? Media discourse on Israeli Jewish/Arab relations. (1994) (14)
Unravelling plasmidome distribution and interaction with its hosting microbiome. (2019) (14)
MGMR: leveraging RNA-Seq population data to optimize expression estimation (2012) (14)
Artificial Intelligence and Heuristic Methods in Bioinformatics (2003) (14)
Multilevel Modeling and Inference of Transcription Regulation (2004) (14)
Degenerate Primer Design (2007) (14)
Becoming an airline passenger: Body, luggage, and documents (2016) (14)
A Polynomial Algorithm for Balancing Acyclic Data Flow Graphs (1992) (14)
Current Flow (2020) (13)
A Point Mutation in Translation Initiation Factor eIF2B Leads to Function- and Time-Specific Changes in Brain Gene Expression (2011) (13)
Effect of L-arginine treatment in pregnant rats with adriamycin nephropathy (1993) (13)
Design of shortest double-stranded DNA sequences covering all k-mers with applications to protein-binding microarrays and synthetic enhancers (2013) (13)
A fast algorithm for constructing monge sequences in transportation problems with forbidden arcs (1993) (13)
Understanding Gene Sequence Variation in the Context of Transcription Regulation in Yeast (2010) (13)
Detecting pathways transcriptionally correlated with clinical parameters. (2008) (12)
An O(n3/2sqrt(log(n))) algorithm for sorting by reciprocal translocations (2011) (12)
Sorting by Reciprocal Translocations via Reversals Theory (2007) (12)
Tracing the Neural Carryover Effects of Interpersonal Anger on Resting-State fMRI in Men and Their Relation to Traumatic Stress Symptoms in a Subsample of Soldiers (2017) (12)
Dissecting the Effect of Genetic Variation on the Hepatic Expression of Drug Disposition Genes across the Collaborative Cross Mouse Strains (2016) (12)
A machine learning model for predicting deterioration of COVID-19 inpatients (2022) (12)
Sorting by Cuts, Joins and Whole Chromosome Duplications (2017) (12)
Bioinformatics for Biologists (2011) (11)
Balancing Problems in Acyclic Networks (1994) (11)
Advanced topics in Graph Algorithms (1994) (11)
Formal and Substantive Rationality in American Law: a Weberian Perspective (1993) (11)
Degenerate primer design: theoretical analysis and the HYDEN program. (2007) (10)
A Faster Algorithm for Simultaneous Alignment and Folding of RNA (2010) (10)
Inaccuracy of the log‐rank approximation in cancer data analysis (2019) (10)
Nation-building and colonialism: The case of Jewish lawyers in Palestine (2001) (9)
Computational analysis of mRNA expression profiling in the inner ear reveals candidate transcription factors associated with proliferation, differentiation, and deafness (2018) (9)
Interval Graphs with Side (and Size) Constraints (1995) (9)
PIVOT : Protein Interactions VisualizatiOn Tool (2003) (9)
MorphDB: Prioritizing Genes for Specialized Metabolism Pathways and Gene Ontology Categories in Plants (2018) (9)
Faucet: streaming de novo assembly graph construction (2017) (9)
Modeling transcription programs: inferring binding site activity and dose-response model optimization (2003) (9)
Professionalism and monopoly of expertise: Lawyers and administrative law, 1933-1937 (1993) (8)
Semiotics of Indicators: The Case of Corporate Human Rights Responsibility* (2012) (8)
On the frequency of genome rearrangement events in cancer karyotypes (2007) (8)
ABLE: an Activity-Based Level Set Segmentation Algorithm for Two-Photon Calcium Imaging Data (2017) (8)
Religion, feminism, and professionalism : The case of rabbinical advocates (1996) (8)
State‐Oriented and Community‐Oriented Lawyering for a Cause (2001) (8)
Physical Maps and Interval Sandwich Problems: Bounded Degrees Help (1996) (8)
Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, RECOMB 2000, Tokyo, Japan, April 8-11, 2000 (1997) (8)
MONET: Multi-omic module discovery by omic selection (2020) (8)
Reconstructing cancer karyotypes from short read data: the half empty and half full glass (2017) (8)
Identifying Blocks and Sub-populations in Noisy SNP Data (2003) (7)
Assessing the Quality of Whole Genome Alignments in Bacteria (2009) (7)
Computational Problems in Noisy SNP and Haplotype Analysis: Block Scores, Block Identification, and Population Stratification (2004) (7)
Sorting cancer karyotypes using double-cut-and-joins, duplications and deletions (2018) (7)
Electricity and Empire in 1920s Palestine under British Rule (2016) (7)
Reconstructing Chain Functions in Genetic Networks (2006) (7)
Classification of node-positive melanomas into prognostic subgroups using keratin, immune, and melanogenesis expression patterns (2021) (7)
Personalized prediction of adverse heart and kidney events using baseline and longitudinal data from SPRINT and ACCORD (2019) (7)
GePMI: A statistical model for personal intestinal microbiome identification (2018) (7)
Probabilistic Analysis in Linear Programming (1993) (7)
Computational Problems in Perfect Phylogeny Haplotyping: Typing without Calling the Allele (2008) (6)
ADEPTUS: a discovery tool for disease prediction, enrichment and network analysis based on profiles from many diseases (2018) (6)
Genome Rearrangement Problems with Single and Multiple Gene Copies: A Review (2019) (6)
Greedily Solvable Transportation Networks and Edge-Guided Vertex Elimination (1993) (6)
HTS-IBIS: fast and accurate inference of binding site motifs from HT-SELEX data (2015) (6)
A specific RAD51 haplotype increases breast cancer risk in Jewish non-Ashkenazi high-risk women. (2006) (5)
Advanced computational techniques for re-sequencing DNA with polymerase signaling assay arrays. (2003) (5)
Erratum to: Expression and methylation patterns partition luminal-A breast tumors into distinct prognostic subgroups (2016) (5)
Genomic meta-analysis of the interplay between 3D chromatin organization and gene expression programs under basal and stress conditions (2018) (5)
Interval Graphs, Interval Orders and the Consistency of Temporal Events (1992) (5)
Efficient algorithms for minimum-cost flow problems with piecewise-linear convex costs (1994) (5)
Matching with don't-cares and a small number of mismatches (2009) (4)
RECOMB 2000 : proceedings of the Fourth annual international conference on computational molecular biology : April 8-11, 2000, Tokyo, Japan (2000) (4)
Using syncmers improves long-read mapping (2022) (4)
Design of shortest double-stranded DNA sequences covering all k-mers with applications to protein-binding microarrays and synthetic enhancers (2015) (4)
3CAC: improving the classification of phages and plasmids in metagenomic assemblies using assembly graphs (2021) (4)
A novel candidate cis-regulatory motif pair in the promoters of germline and oogenesis genes in C. elegans. (2012) (4)
2004 Modelling Spatial and Economic Impacts of Disasters [Book Review] (2005) (3)
Rearrangements in Genomes with Centromeres Part I: Translocations (2007) (3)
Complexity classi cation of some edge modi cation problems (2001) (3)
Head-hunters and knowledge-gatherers: Colonialism, engineers and fields of planning (2018) (3)
Typing without calling the allele: a strategy for inferring SNP haplotypes (2005) (3)
Increasing the Power of Association Studies by Imputation-based Sparse Tag SNP Selection (2009) (3)
Reconstructing chain functions in genetic networks. (2003) (3)
A Chemical-Distance-Based Test for Positive Darwinian Selection (2001) (3)
The Commodification of Corporate Social Responsibility: An Israeli Test Case (2002) (3)
On the Generality of Phylogenies from Incomplete Directed Characters (2002) (3)
Parameterized syncmer schemes improve long-read mapping (2022) (2)
A comparative analysis of TF binding models learned from PBM, HT-SELEX and ChIP Data (2014) (2)
Immigration Nursing Relief Act. (1990) (2)
Algorithms and Complexity of Sandwich Problems in Graphs (Extended Abstract) (1993) (2)
A Family of Simplex Variants Solving for An mxd Linear Program in (1983) (2)
On the efficiency of the simplex method (linear programming, complexity, algorithms) (1984) (2)
Dataset-adaptive minimizer order reduces memory usage in k-mer counting (2021) (2)
RichMind: A Tool for Improved Inference from Large-Scale Neuroimaging Results (2016) (2)
A comment on “the emergence of militaristic nationalism in Israel” (1991) (2)
A Simplex Variant Solving An mxd Linear Program in O(min(m squared, d (1983) (2)
Who Got to Decide on Nadia Abu El-Haj's Tenure?. (2008) (2)
The 1931 census of Palestine and the statistical (un)making of an Arab landless class (2020) (2)
Special issue on computational molecular biology (2007) (2)
The MORPH-R web server and software tool for predicting missing genes in biological pathways. (2015) (2)
Convex separable minimization over partial order constraints (1991) (2)
792. Tired and MISCONNECTED: A Breakdown of Brain Modularity following Sleep Deprivation (2017) (2)
Power and Identity in the Legal Field (2001) (1)
Emptied Lands: A Legal Geography of Bedouin Rights in the Negev. By AlexandreKedar, AhmadAmara and OrenYiftachel. Stanford: Stanford University Press2019. 424 pp. $70 hardcover. (2020) (1)
DOMINO: a novel algorithm for network-based identification of active modules with reduced rate of false calls (2020) (1)
The Restriction Scaffold Problem (Extended Abstract) (2002) (1)
A Plasma Membrane EMAP Reveals Links Between the Eisosome , Sphingolipid Metabolism and Endosomal Trafficking (2010) (1)
Bonnie Berger named ISCB 2019 ISCB Accomplishments by a Senior Scientist Award recipient (2019) (1)
An extensive enhancer-promoter map generated by genome-scale analysis of enhancer and gene activity patterns (2017) (1)
Perfect Completion and Deletion in Random (2007) (1)
Spectrum analysis and characteristics of a 2-level pulse-width modulation inverter† (1978) (1)
Examination of exhaustive cloning attempts reveals that C. elegans piRNAs, transposons, and repeat sequences are efficiently cloned in yeast, but not in bacteria (2014) (1)
Evaluation and integration of functional annotation pipelines for newly sequenced organisms: the potato genome as a test case (2014) (1)
The DOMINO web-server for active module identification analysis (2021) (1)
Sorting Genomes with Centromeres by Translocations (2008) (1)
Enchantment, Aesthetics, and the Superficial Powers of Modern Law@@@Bridging Divides: The Channel Tunnel and English Legal Identity in the New Europe@@@The Colonies of Law: Colonialism, Zionism, and Law in Early Mandate Palestine (2001) (1)
An Algorithm Combining Discrete and Continuous Methods for Optical Mapping (1999) (1)
CT-FOCS: a novel method for inferring cell type-specific enhancer–promoter maps (2019) (1)
Analysis of gene expression data: clustering and beyond (1999) (1)
Erratum: Pediatric onset Crohn's colitis is characterized by genotype-dependent age-related susceptibility (Inflamatory Bowel Diseases vol. 13 (1509-1515)) (2008) (1)
Author Correction: GePMI: a statistical model for personal intestinal microbiome identification (2018) (1)
2018 ISCB accomplishments by a senior scientist award (2018) (1)
Israel vs. BDS: corporate social responsibility and the politics of human rights (2020) (1)
MGMR: leveraging RNA-Seq population data to optimize expression estimation (2012) (1)
Improving the efficiency of de Bruijn graph construction using compact universal hitting sets (2020) (1)
The Comrades Law of Hebrew Workers in Palestine: A Study in Socialist Justice (2002) (1)
ON THE EVOLUTION OF TRANSCRIPTION REGULATION NETWORKS (2008) (1)
Biclustering Algorithms : A Survey Amos Tanay (2004) (1)
PO-351 Promo: an interactive tool for analysing large multi-omic cancer datasets (2018) (1)
Early detection of prostate gland and breast cancer risk based on routine check-up data using survival analysis trees for left-truncated and right-censored data (2021) (1)
An algorithm combining discrete and continuous methods for optical mapping. (2000) (1)
BARCODE: fast lossless compression via cascading bloom filters (2014) (1)
Algorithms for Molecular Biology 10.1.2 Unique Probe Mapping (2007) (1)
Shamir platform and a compendium of metazoan target sets Transcription factor and microRNA motif discovery : The Amadeus (2008) (1)
Reconstructing cancer karyotypes from short read data: the half full and half empty glass (2017) (1)
Catastrophes and Humanitarian Corporate Responsibility: A Conceptual Critique (2007) (1)
The Relevance of Moral Agendas (1996) (0)
Ronen Shamir, Managing Legal Uncertainty: Elite Lawyers in the New Deal , Durham, N.C.: Duke University Press, 1995. Pp. xii + 252. $45.00 cloth; $18.95 paper (ISBN 0-8223-1650-1; 0-8223-1662-5). (1998) (0)
Foreword (1998) (0)
Genomic meta-analysis of the interplay between 3D chromatin organization and gene expression programs under basal and stress conditions (2018) (0)
אימהות', 'אבהות', 'משפחה': בין אינטואיציה להלכה פסוקה' (Concepts of Motherhood, Fatherhood and Family in Israeli Courts: A Case Study) (2014) (0)
Non-standard Format Chapter (2006) (0)
Cell type specific enhancer-promoter network inference based on single omic data (2018) (0)
Let the Poles Act (2013) (0)
Genome analysis Faucet : streaming de novo assembly graph construction (2017) (0)
Analysis of Gene Expression Data 9.1.2 Regulation of Transcription (2004) (0)
Identifying Blo ks and Sub-Populations in (2003) (0)
2018 ISCB Overton Prize awarded to Cole Trapnell (2018) (0)
1 Hidden Markov Models (2007) (0)
PROMO: an interactive tool for analyzing clinically-labeled multi-omic cancer datasets (2019) (0)
Title : Constructing module maps for integrated analysis of heterogeneous biological networks Running title : From heterogeneous networks to module maps (2014) (0)
Analysis of Gene Expression Data 4.1 the Click Algorithm 4.1.1 Introduction 4.1.2 Probabilistic Model (2007) (0)
Supporting Information S2 (2012) (0)
2020 ISCB accomplishments by a Senior Scientist Award: Steven Salzberg (2021) (0)
2019 ISCB Overton Prize: Christophe Dessimoz (2019) (0)
Modularity, evolution and regulation in bionetworks (2005) (0)
The Jaffa Powerhouse (2013) (0)
Integration of Gene Expression and DNA Methylation Data Across Different Experiments (2022) (0)
Seminar on Deep Sequencing Algorithms-Fall 2018 Syllabus (2018) (0)
Foreword (2002) (0)
2019 Outstanding Contributions to ISCB awarded to Barb Bryant (2019) (0)
318 The ATM-mediated DNA damage response: the system and the pathways (2010) (0)
DOMINO: a novel network-based module detection algorithm with reduced rate of false calls (2020) (0)
Analysis of Gene Expression Data 3.1 Gapped Chips for Sbh 3.1.1 Motivation 3.1.2 an Upper Bound (2002) (0)
Discovering Transcriptional Modules by Combined Analysis of Expression Profiles and Regulatory Sequences (2010) (0)
Yaron Peleg . Orientalism and the Hebrew Imagination . Ithaca : Cornell University Press . 2005 . Pp. x, 153. $35.00. (2009) (0)
Efficient minimizer orders for large values of k using minimum decycling sets (2023) (0)
Assembling a Jewish Economy (2013) (0)
Dynamic programming: one algorithmic key for many biological locks (2011) (0)
2018 ISCB Innovator Award recognizes M. Madan Babu (2018) (0)
Analysis of Gene Expression Data 9.1.2 Experimental Strategies (2007) (0)
11.1 Identification of Gene Regulatory Networks by Gene Disruptions and Overexpressions (2002) (0)
Reconstructing cancer karyotypes from short read data: the half empty and half full glass (2017) (0)
Bioinformatics for Biologists: REFERENCES (2011) (0)
Analysis of Gene Expression Data 1.1 Basic Biology 1.1.1 Historical Introduction 1.1.2 Dna (deoxy-ribonucleic Acid) (2002) (0)
Reduced changes in protein compared to mRNA levels across non-proliferating tissues (2017) (0)
Revealing the structure and dynamics of cis-regulation using heterogeneous, genome-wide, multi-species data. (2004) (0)
Supporting Information S1 (2011) (0)
On reducing complexity of deep sequencing data analysis (2018) (0)
Method Towards accurate imputation of quantitative genetic interactions (2010) (0)
Algorithms for Molecular Biology 2.1 Pairwise Alignment 2.1.1 Introduction 2.1.2 Problem Definition and Biological Motivation (2001) (0)
The EXPANDER for Transcriptom (2019) (0)
Special RECOMB 2002 Issue (2004) (0)
Faculty Opinions recommendation of Detection of widespread horizontal pleiotropy in causal relationships inferred from Mendelian randomization between complex traits and diseases. (2018) (0)
Preface: Special RECOMB 2000 Issue (2000) (0)
From State to Market (2013) (0)
Lecture 6: January 10, 1999 (2000) (0)
Clustering laminar cytoarchitecture on the cortical surfaces (2022) (0)
FOCS: a novel method for analyzing enhancer and gene activity patterns infers an extensive enhancer–promoter map (2018) (0)
Gene Regulation, Protein Networks and Disease: A Computational Perspective (2012) (0)
Adapting Breast Cancer Polygenic Risk Scores to Diverse Ethnic Groups in Israel (2022) (0)
Unraveling Genes, Understanding Diseases (2010) (0)
Faculty Opinions recommendation of Practical universal k-mer sets for minimizer schemes. (2019) (0)
2019 ISCB Overton Prize: Christophe Dessimoz (2019) (0)
Using Computational Biology Methods to Improve Post-silicon Microprocessor Testing (2011) (0)
2020 Outstanding contributions to ISCB award: Judith Blake (2021) (0)
Algorithms for Molecular Biology 5.1 Approximation Algorithms for Multiple Sequence Alignment 5.1.1 Problem Deenition 5.1.2 the Center Star Method for (sp) Alignment (1999) (0)
Clustering laminar cytoarchitecture: in vivo parcellation based on cortical granularity (2023) (0)
Analysis of Gene Expression Data 5.1 Introduction 5.1.1 Functional Genomics 5.1.2 Representation of Gene Expression Data (2004) (0)
The characteristics, regulation and evolution of human alternatively spliced exons (2006) (0)
Feature extraction and clustering tools for analysing gene expression data from DNA microarrays (1999) (0)
Book Review (0)
2019 ISCB Innovator Award recognizes William Stafford Noble (2019) (0)
Faculty Opinions recommendation of Accurate imputation of histone modifications using transcription. (2020) (0)
Some Computational Challenges in Today's Bio-medicine (2006) (0)
Vai89] P. M. Vaidya. a New Algorithm for Minimizing Convex Functions over Convex Sets. in 5 Concluding Remarks Acknowledgements. I'm Grateful to 4.3 Solving Closest-point Problems 4.1 Finding L S 4 Closest-point Queries (1993) (0)
Bioinformatics for Biologists: Preface (2011) (0)
Message from the ISCB: 2018 ISCB Accomplishments by a Senior Scientist Award (2018) (0)
2018 ISCB Overton Prize awarded to Cole Trapnell (2018) (0)
1 Algorithms for Next Generation Sequencing Data 12 . 1 (2011) (0)
Analysis of chromosomal alterations in cancer (2008) (0)
Bonnie Berger named ISCB 2019 ISCB Accomplishments by a Senior Scientist Award recipient (2019) (0)
Book Review (1987) (0)
Preventicum: The osmotic space of health (2017) (0)
Extracting replicable associations across multiple studies: algorithms for controlling the false discovery rate (2016) (0)
Faculty Opinions recommendation of Quantitative analysis of population-scale family trees with millions of relatives. (2018) (0)
Designing a multiroute synthesis scheme in combinatorial chemistry. (2004) (0)
Computational dissection of regulatory networks using diverse high-throughput data (2004) (0)
Foreword (2000) (0)
Algorithms for Molecular Biology Fall Semester, 2001 (2007) (0)
MONET: Multi-omic patient module detection by omic selection (2020) (0)
2019 Outstanding Contributions to ISCB Awarded to Barb Bryant (2019) (0)
Guest Editors' foreword (2001) (0)
A note on toleran e graph re ognition ? (2002) (0)
2.1.2 Motivation (1999) (0)
2018 ISCB Innovator Award recognizes M. Madan Babu (2018) (0)
2020 ISCB Innovatory Award: Xiaole Shirley Liu (2021) (0)
Network-Induced Classi cation Kernels for Gene Expression Pro le Analysis (2012) (0)
Algorithms for Molecular Biology 12.1.2 Motivation (1999) (0)
Faculty Opinions recommendation of Promoter capture Hi-C-based identification of recurrent noncoding mutations in colorectal cancer. (2018) (0)
Analysis of Gene Expression Data 3.1 Introduction 3.1.1 Functional Genomics 3.1.2 Representation of Gene Expression Data (2007) (0)
Algorithms for Molecular Biology 5.1 Hidden Markov Models 5.1.1 Preface: Cpg Islands 5.1.2 Reminder: Markov Chains (2002) (0)
Analysis of Gene Expression Data 1.1.2 Dna (deoxy-ribonucleic Acid) (2004) (0)
Preface: 2nd Satellite Meeting on Bioinformatics Education, Research in Computational Molecular Biology (RECOMB-BE 2010) (2011) (0)
Book Review (0)
Preface (2007) (0)
2018 outstanding contributions to ISCB award: Russ Altman (2018) (0)
Faculty Opinions recommendation of Syncmers are more sensitive than minimizers for selecting conserved k‑mers in biological sequences. (2021) (0)
Algorithms for Molecular Biology 4.1 Multiple Alignment (2002) (0)
Algorithms for Molecular Biology 11.1 Genome Rearrangements 11.1.1 Preface 11.1.2 Operations on Chromosomes (1999) (0)
Analysis of Gene Expression Data 7.1 Support Vector Machines 7.1.1 Introduction (2007) (0)
Bioinformatics for Biologists: Glossary (2011) (0)
2020 ISCB Overton Prize: Jian Peng (2021) (0)
Shamir response network in yeast Refinement and expansion of signaling pathways : The osmotic data (2007) (0)
Positive selection 1 A test for positive Darwinian selection (2001) (0)
Ilana Feldman, Police Encounters: Security and Surveillance in Gaza under Egyptian Rule . Stanford: Stanford University Press, 2015. (2016) (0)
Complexity and algorithms for copy-number evolution problems (2017) (0)
Computational methods in analysis of gene regulation and protein interactions (2012) (0)
2019 ISCB Innovator Award Recognizes William Stafford Noble (2019) (0)
Do networks help in making sense of the omics data deluge (2015) (0)
4CAC: 4-class classification of metagenome assemblies using machine learning and assembly graphs (2023) (0)
Algorithms for Molecular Biology Fall Semester , 1998 Lecture 7 : January 17 , 1999 (1999) (0)
Analysis of Gene Expression Data Lecturer: Ron Shamir Scribe: Seagull Chalamish and Itamar Elem 2.1 Introduction 2.1.1 Functional Genomics 2.1.2 Representation of Gene Expression Data (2005) (0)
Algorithms for Molecular Biology 10.1.2 Operations on Chromosomes (2007) (0)
Fast lossless compression via cascading Bloom filters (2014) (0)
SCAPP: an algorithm for improved plasmid assembly in metagenomes (2021) (0)
Clustering multilayered cytoarchitectonic surface-based data in the brain (2022) (0)
Message from the ISCB: 2018 Outstanding Contributions to ISCB Award: Russ Altman (2018) (0)

This paper list is powered by the following services:

Other Resources About Ron Shamir

en.wikipedia.org

What Schools Are Affiliated With Ron Shamir?

Ron Shamir is affiliated with the following schools:

Image Attributions

Image Source for Ron Shamir