Ross Hardison
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Why Is Ross Hardison Influential?
(Suggest an Edit or Addition)According to Wikipedia, Ross C. Hardison is an American biochemist and molecular biologist, currently the T. Ming Chu Professor of Biochemistry and Molecular Biology at the Eberly College of Science, of the Pennsylvania State University.
Ross Hardison's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project (2007) (5196)
- Initial sequencing and comparative analysis of the mouse genome. (2002) (4609)
- Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution (2004) (2417)
- The ENCODE (ENCyclopedia Of DNA Elements) Project (2004) (2194)
- Galaxy: a platform for interactive large-scale genome analysis. (2005) (2084)
- An integrated encyclopedia of DNA elements in the human genome (2012) (2080)
- Genome sequence of the Brown Norway rat yields insights into mammalian evolution (2004) (2053)
- A User's Guide to the Encyclopedia of DNA Elements (ENCODE) (2011) (1467)
- The isolation of structural genes from libraries of eucaryotic DNA (1978) (1362)
- A comparative encyclopedia of DNA elements in the mouse genome (2014) (1337)
- Human-mouse alignments with BLASTZ. (2003) (1320)
- Evolutionary and Biomedical Insights from the Rhesus Macaque Genome (2007) (1309)
- PipMaker--a web server for aligning two genomic DNA sequences. (2000) (1258)
- Expanded encyclopaedias of DNA elements in the human and mouse genomes (2020) (765)
- Topologically associating domains are stable units of replication-timing regulation (2014) (714)
- Genome analysis of the platypus reveals unique signatures of evolution (2008) (711)
- Defining functional DNA elements in the human genome (2014) (647)
- Integrative annotation of chromatin elements from ENCODE data (2012) (523)
- Complete Khoisan and Bantu genomes from southern Africa (2010) (448)
- Conserved noncoding sequences are reliable guides to regulatory elements. (2000) (445)
- An encyclopedia of mouse DNA elements (Mouse ENCODE) (2012) (438)
- HbVar: A relational database of human hemoglobin variants and thalassemia mutations at the globin gene server (2002) (433)
- Global regulation of erythroid gene expression by transcription factor GATA-1. (2004) (427)
- Improvements in the HbVar database of human hemoglobin variants and thalassemia mutations for population and sequence variation studies (2004) (395)
- The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions (2017) (379)
- Updates of the HbVar database of human hemoglobin variants and thalassemia mutations (2013) (371)
- Long human-mouse sequence alignments reveal novel regulatory elements: a reason to sequence the mouse genome. (1997) (338)
- A GATA-1-regulated microRNA locus essential for erythropoiesis (2008) (333)
- A brief history of hemoglobins: plant, animal, protist, and bacteria. (1996) (330)
- Insights into GATA-1-mediated gene activation versus repression via genome-wide chromatin occupancy analysis. (2009) (305)
- Hemoglobins from bacteria to man: evolution of different patterns of gene expression. (1998) (302)
- Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution. (2003) (298)
- 28-way vertebrate alignment and conservation track in the UCSC Genome Browser. (2007) (293)
- Cross-species sequence comparisons: a review of methods and available resources. (2003) (275)
- HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient (2017) (270)
- Mulan: multiple-sequence local alignment and visualization for studying function and evolution. (2005) (265)
- ORegAnno: an open-access community-driven resource for regulatory annotation (2007) (263)
- MultiPipMaker and supporting tools: alignments and analysis of multiple genomic DNA sequences (2003) (254)
- Evolution and functional classification of vertebrate gene deserts. (2005) (249)
- Locus control regions of mammalian beta-globin gene clusters: combining phylogenetic analyses and experimental results to gain functional insights. (1997) (246)
- A genome-editing strategy to treat β-hemoglobinopathies that recapitulates a mutation associated with a benign genetic condition (2016) (241)
- Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences. (2005) (235)
- Principles of regulatory information conservation between mouse and human (2014) (232)
- Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression. (2009) (222)
- Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome. (2007) (221)
- Integrative detection and analysis of structural variation in cancer genomes (2018) (218)
- Genomic approaches towards finding cis-regulatory modules in animals (2012) (213)
- HbVar database of human hemoglobin variants and thalassemia mutations: 2007 update (2007) (212)
- Tissue-Specific Mitotic Bookmarking by Hematopoietic Transcription Factor GATA1 (2012) (206)
- The effects of chromatin organization on variation in mutation rates in the genome (2015) (203)
- Unlinking an lncRNA from Its Associated cis Element. (2016) (200)
- Bromodomain protein Brd3 associates with acetylated GATA1 to promote its chromatin occupancy at erythroid target genes (2011) (199)
- A Complex Chromatin Landscape Revealed by Patterns of Nuclease Sensitivity and Histone Modification within the Mouse β-Globin Locus (2003) (192)
- A space-efficient algorithm for local similarities (1990) (191)
- SCL and associated proteins distinguish active from repressive GATA transcription factor complexes. (2008) (189)
- zPicture: dynamic alignment and visualization tool for analyzing conservation profiles. (2004) (154)
- A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly. (2007) (151)
- Distinguishing regulatory DNA from neutral sites. (2003) (151)
- Comparative genome analysis delimits a chromosomal domain and identifies key regulatory elements in the α globin cluster (2001) (150)
- What fraction of the human genome is functional? (2011) (150)
- Systematic documentation and analysis of human genetic variation in hemoglobinopathies using the microattribution approach (2011) (150)
- ESPERR: learning strong and weak signals in genomic sequence alignments to identify functional elements. (2006) (143)
- Lineage and species-specific long noncoding RNAs during erythro-megakaryocytic development. (2014) (135)
- Evolution of hemoglobin and its genes. (2012) (134)
- Regulatory potential scores from genome-wide three-way alignments of human, mouse, and rat. (2004) (133)
- The structure and transcription of four linked rabbit β-like globin genes (1979) (129)
- Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration. (2011) (125)
- Comparison of five methods for finding conserved sequences in multiple alignments of gene regulatory regions. (1999) (121)
- Chromatin Structure Dynamics During the Mitosis to G1-Phase Transition (2019) (110)
- Graded repression of PU.1/Sfpi1 gene transcription by GATA factors regulates hematopoietic cell fate. (2009) (108)
- Trisomy 21-associated defects in human primitive hematopoiesis revealed through induced pluripotent stem cells (2012) (105)
- Domain-focused CRISPR screen identifies HRI as a fetal hemoglobin regulator in human erythroid cells (2018) (104)
- Genome-wide ChIP-Seq reveals a dramatic shift in the binding of the transcription factor erythroid Kruppel-like factor during erythrocyte differentiation. (2011) (104)
- The BET Protein BRD2 Cooperates with CTCF to Enforce Transcriptional and Architectural Boundaries. (2017) (103)
- Occupancy by key transcription factors is a more accurate predictor of enhancer activity than histone modifications or chromatin accessibility (2015) (102)
- Transcriptional burst initiation and polymerase pause release are key control points of transcriptional regulation (2018) (102)
- The changing mouse embryo transcriptome at whole tissue and single-cell resolution (2020) (96)
- Comparative analysis of three-dimensional chromosomal architecture identifies a novel fetal hemoglobin regulatory element (2017) (94)
- PhenCode: connecting ENCODE data with mutations and phenotype (2007) (93)
- Use of long sequence alignments to study the evolution and regulation of mammalian globin gene clusters. (1993) (93)
- The linkage arrangement of four rabbit β-like globin genes (1979) (90)
- Genome accessibility is widely preserved and locally modulated during mitosis (2015) (89)
- Functions of BET proteins in erythroid gene expression. (2015) (89)
- Finding cis-regulatory elements using comparative genomics: some lessons from ENCODE data. (2007) (88)
- Comparative structural and functional analysis of the olfactory receptor genes flanking the human and mouse beta-globin gene clusters. (2000) (87)
- Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis (2014) (85)
- Comparative genome analysis delimits a chromosomal domain and identifies key regulatory elements in the alpha globin cluster. (2001) (84)
- Patterns of insertions and their covariation with substitutions in the rat, mouse, and human genomes. (2004) (84)
- A hyperactive transcriptional state marks genome reactivation at the mitosis–G1 transition (2016) (83)
- Perspectives on ENCODE (2020) (79)
- Conserved E Boxes Function as Part of the Enhancer in Hypersensitive Site 2 of the β-Globin Locus Control Region (1997) (79)
- Perspectives on ENCODE (2020) (79)
- Jointly characterizing epigenetic dynamics across multiple human cell types (2016) (70)
- Experimental validation of predicted mammalian erythroid cis-regulatory modules. (2006) (69)
- Recent Developments in Linear-Space Alignment Methods: A Survey (1994) (67)
- Description and Targeted Deletion of 5′ Hypersensitive Site 5 and 6 of the Mouse β-Globin Locus Control Region (1998) (65)
- Levels of GATA-1/GATA-2 transcription factors modulate expression of embryonic and fetal hemoglobins. (2000) (64)
- Isolation and nucleotide sequence of the rabbit globin gene cluster psi zeta-alpha 1-psi alpha. Absence of a pair of alpha-globin genes evolving in concert. (1986) (63)
- Genome-wide comparative analysis reveals human-mouse regulatory landscape and evolution (2014) (62)
- Access to a syllabus of human hemoglobin variants (1996) via the World Wide Web. (1998) (62)
- Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis (2014) (61)
- A previously undetected pseudogene in the human alpha globin gene cluster. (1986) (60)
- Polyacrylamide gel electrophoretic fractionation of histones. (1978) (60)
- Complete nucleotide sequence of the rabbit β-like globin gene cluster: Analysis of intergenic sequences and comparison with the human β-like globin gene cluster (1989) (60)
- A comprehensive and high-resolution genome-wide response of p53 to stress. (2014) (59)
- Human-macaque comparisons illuminate variation in neutral substitution rates (2008) (58)
- Sequences Flanking Hypersensitive Sites of the β-Globin Locus Control Region Are Required for Synergistic Enhancement (2001) (56)
- Role of DNA sequences outside the cores of DNase hypersensitive sites (HSs) in functions of the beta-globin locus control region. Domain opening and synergism between HS2 and HS3. (1996) (56)
- Pluripotent stem cells reveal erythroid-specific activities of the GATA1 N-terminus. (2015) (52)
- GALA, a database for genomic sequence alignments and annotations. (2003) (52)
- Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps (2013) (49)
- The rabbit C family of short, interspersed repeats. Nucleotide sequence determination and transcriptional analysis. (1984) (49)
- Planning the Human Variome Project: The Spain report (2009) (48)
- A map of cis-regulatory elements and 3D genome structures in zebrafish (2020) (48)
- Identification of Biologically Relevant Enhancers in Human Erythroid Cells* (2013) (48)
- An Iron Responsive Element-like Stem-Loop Regulates α-Hemoglobin-stabilizing Protein mRNA* (2008) (47)
- Genome-wide Epigenetic Data Facilitate Understanding of Disease Susceptibility Association Studies* (2012) (47)
- HbVar database for human hemoglobin variants and thalassemia mutations (2007) (46)
- DATABASES OF HUMAN HEMOGLOBIN VARIANTS AND OTHER RESOURCES AT THE GLOBIN GENE SERVER (2001) (46)
- PipTools: a computational toolkit to annotate and analyze pairwise comparisons of genomic sequences. (2002) (45)
- Association between divergence and interspersed repeats in mammalian noncoding genomic DNA (2001) (45)
- Function of GATA Factors in the Adult Mouse Liver (2013) (44)
- A T-to-G Transversion at Nucleotide −567 Upstream of HBG2 in a GATA-1 Binding Motif Is Associated with Elevated Hemoglobin F (2008) (43)
- A Linear-Time Algorithm for the 1-Mismatch Problem (1997) (43)
- OnTAD: hierarchical domain structure reveals the divergence of activity among TADs and boundaries (2018) (42)
- The nucleotide sequence of the rabbit embryonic globin gene beta 4. (1983) (42)
- Electronic access to sequence alignments, experimental results, and human mutations as an aid to studying globin gene regulation. (1998) (41)
- Sequence and comparative analysis of the rabbit alpha-like globin gene cluster reveals a rapid mode of evolution in a G + C-rich region of mammalian genomes. (1991) (40)
- Globin genes on the move (2008) (40)
- Clinically relevant updates of the HbVar database of human hemoglobin variants and thalassemia mutations (2020) (38)
- Software tools for analyzing pairwise alignments of long sequences. (1991) (38)
- Distinct properties and functions of CTCF revealed by a rapidly inducible degron system (2021) (37)
- Comparative analysis of the locus control region of the rabbit β-like globin gene cluster: HS3 increases transient expression of an embryonic ε-globin gene (1993) (37)
- Parallelization of a local similarity algorithm (1992) (37)
- Locating well-conserved regions within a pairwise alignment (1993) (36)
- Comparison of the beta-like globin gene families of rabbits and humans indicates that the gene cluster 5'-epsilon-gamma-delta-beta-3' predates the mammalian radiation. (1984) (36)
- Globin gene server: a prototype E-mail database server featuring extensive multiple alignments and data compilation for electronic genetic analysis. (1994) (36)
- ZNF410 uniquely activates the NuRD component CHD4 to silence fetal hemoglobin expression (2020) (35)
- Primary sequence and epigenetic determinants of in vivo occupancy of genomic DNA by GATA1 (2009) (35)
- Phylogenetic footprinting of hypersensitive site 3 of the beta-globin locus control region. (1997) (35)
- Analysis of conserved domains and sequence motifs in cellular regulatory proteins and locus control regions using new software tools for multiple alignment and visualization. (1992) (35)
- Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif. (2008) (35)
- Interrogating Histone Acetylation and BRD4 as Mitotic Bookmarks of Transcription (2019) (34)
- Characterization of a widely expressed gene (LUC7-LIKE; LUC7L) defining the centromeric boundary of the human alpha-globin domain. (2001) (34)
- The complete sequences of the galago and rabbit beta-globin locus control regions: extended sequence and functional conservation outside the cores of DNase hypersensitive sites. (1997) (34)
- Accurate and reproducible functional maps in 127 human cell types via 2D genome segmentation (2017) (33)
- Exploiting genetic variation to uncover rules of transcription factor binding and chromatin accessibility (2018) (33)
- Assignment of orthologous relationships among mammalian alpha-globin genes by examining flanking regions reveals a rapid rate of evolution. (1986) (33)
- The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions (2018) (32)
- Chaining Multiple-Alignment Blocks (1994) (32)
- Alteration of genome folding via contact domain boundary insertion (2020) (32)
- Selenoproteins regulate stress erythroid progenitors and spleen microenvironment during stress erythropoiesis. (2018) (32)
- Establishment of regulatory elements during erythro-megakaryopoiesis identifies hematopoietic lineage-commitment points (2018) (32)
- Comparative analysis of the alpha-like globin clusters in mouse, rat, and human chromosomes indicates a mechanism underlying breaks in conserved synteny. (2004) (32)
- The Evolution of Hemoglobin (1999) (32)
- Unique sequence organization and erythroid cell-specific nuclear factor-binding of mammalian theta 1 globin promoters. (1989) (31)
- An electronic database of human hemoglobin variants on the World Wide Web. (1998) (31)
- Histone neighbors in nuclei and extended chromatin (1977) (31)
- Subfamily relationships and clustering of rabbit C repeats. (1991) (30)
- HRI-regulated transcription factor ATF4 activates BCL11A transcription to silence fetal hemoglobin expression. (2020) (28)
- An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis (2019) (28)
- Genome-Wide Organization of GATA1 and TAL1 Determined at High Resolution (2015) (27)
- Nuclear protein-binding sites in a transcriptional control region of the rabbit alpha-globin gene (1993) (27)
- Multiple Regulatory Elements in the 5′-Flanking Sequence of the Human ε-Globin Gene* (1998) (27)
- Evolution of hemoglobin loci and their regulatory elements. (2018) (27)
- Short interspersed repeats in rabbit DNA can provide functional polyadenylation signals. (1990) (26)
- Description and targeted deletion of 5' hypersensitive site 5 and 6 of the mouse beta-globin locus control region. (1998) (26)
- Restoration of the CCAAT Box or Insertion of the CACCC Motif Activate δ-Globin Gene Expression (1997) (25)
- Sequences Within and Flanking Hypersensitive Sites 3 and 2 of the β-Globin Locus Control Region Required for Synergistic Versus Additive Interaction With the ε-globin Gene Promoter (1996) (25)
- Exponential decay of GC content detected by strand-symmetric substitution rates influences the evolution of isochore structure. (2008) (25)
- The E3 ligase adaptor molecule SPOP regulates fetal hemoglobin levels in adult erythroid cells. (2019) (25)
- Restoration of the CCAAT Box or Insertion of the CACCC Motif Activate δ-Globin Gene Expression (1997) (25)
- Restoration of the CCAAT Box or Insertion of the CACCC Motif Activate δ-Globin Gene Expression (1997) (25)
- Analysis of rabbit β-like globin gene transcripts during development (1983) (24)
- Positive and negative regulatory elements of the rabbit embryonic eglobin gene revealed by an improved multiple alignment program and functional analysis (1993) (24)
- An approach to histone nearest neighbours in extended chromatin. (1975) (24)
- Transcription unit of the rabbit beta 1 globin gene (1985) (24)
- Rabbit globin pseudogene psi beta 2 is a hybrid of delta- and beta-globin gene sequences. (1984) (24)
- Comparative genomics. (2004) (22)
- DNase I and nuclease S1 sensitivity of the rabbit beta 1 globin gene in nuclei and in supercoiled plasmids. (1985) (21)
- Localization of the beta-like globin gene cluster and the genes for parathyroid hormone and c-Harvey-ras 1 to region q14----q21 of rabbit chromosome 1 by in situ hybridization. (1989) (20)
- Role of DNA Sequences Outside the Cores of DNase Hypersensitive Sites (HSs) in Functions of the -Globin Locus Control Region (1996) (20)
- Understanding Heterogeneity of Fetal Hemoglobin Induction through Comparative Analysis of F- and A-erythroblasts. (2020) (20)
- CpG islands from the alpha-globin gene cluster increase gene expression in an integration-dependent manner (1997) (20)
- Restriction enzyme analysis of tomato chloroplast and chromoplast DNA. (1986) (20)
- Single-nucleotide-level mapping of DNA regulatory elements that control fetal hemoglobin expression (2021) (19)
- New views of evolution and regulation of vertebrate beta-like globin gene clusters from an orphaned gene in marsupials. (2001) (19)
- Variability within the rabbit C repeats and sequences shared with other SINES. (1985) (19)
- A Negative Cis-element Regulates the Level of Enhancement by Hypersensitive Site 2 of the β-Globin Locus Control Region* (2001) (18)
- Between form and function: the complexity of genome folding (2017) (18)
- Sharing data between LSDBs and central repositories (2009) (18)
- S3norm: simultaneous normalization of sequencing depth and signal-to-noise ratio in epigenomic data (2018) (17)
- Frequent Somatic TET2 Mutations in Chronic NK-LGL Leukemia with Distinct Patterns of Cytopenias. (2021) (17)
- Conversion events in gene clusters (2011) (17)
- A database of experimental results on globin gene expression. (1998) (17)
- Disorders of Hemoglobin: The Normal Structure and Regulation of Human Globin Gene Clusters (2009) (17)
- Long interspersed L1 repeats in rabbit DNA are homologous to L1 repeats of rodents and primates in an open-reading-frame region. (1986) (16)
- CTCF and transcription influence chromatin structure re-configuration after mitosis (2021) (16)
- An Integrative Framework for Detecting Structural Variations in Cancer Genomes (2017) (16)
- Flanking and Intragenic Sequences Regulating the Expression of the Rabbit α-Globin Gene (*) (1995) (15)
- Reply to Brunet and Doolittle: Both selected effect and causal role elements can influence human biology and disease (2014) (15)
- An Effective Method for Detecting Gene Conversion Events in Whole Genomes (2010) (15)
- The role of H1 in the structure of chromatin. (1978) (15)
- GWAS to Therapy by Genome Edits? (2013) (15)
- The 5' ends of LINE1 repeats in rabbit DNA define subfamilies and reveal a short sequence conserved between rabbits and humans. (1992) (14)
- PipMaker: A World Wide Web Server for Genomic Sequence Alignments (2003) (14)
- Block duplications of a zeta-zeta-alpha-theta gene set in the rabbit alpha-like globin gene cluster. (1987) (14)
- Dynamic CTCF binding directly mediates interactions among cis-regulatory elements essential for hematopoiesis. (2020) (14)
- Comparative Genomics (2003) (13)
- A point of contact between computer science and molecular biology (1994) (13)
- Efficient and reliable transfection of mouse erythroleukemia cells using cationic lipids. (1999) (13)
- Localization of the alpha-like globin gene cluster to region q12 of rabbit chromosome 6 by in situ hybridization. (1991) (12)
- Domain-adaptive neural networks improve cross-species prediction of transcription factor binding (2021) (12)
- MultiPipMaker: A Comparative Alignment Server for Multiple DNA Sequences (2010) (12)
- Constructing Aligned Sequence Blocks (1994) (12)
- Nucleotide sequence and expression of rabbit globin genes zeta 1, zeta 2, and zeta 3. Pseudogenes generated by block duplications are transcriptionally competent. (1988) (12)
- Functional and binding studies of HS3.2 of the beta-globin locus control region. (2002) (12)
- Improvements to GALA and dbERGE II: databases featuring genomic sequence alignment, annotation and experimental results (2004) (12)
- Dynamics of GATA1 binding and expression response in a GATA1-induced erythroid differentiation system (2015) (12)
- Subtype-specific 3D genome alteration in acute myeloid leukaemia (2022) (11)
- An apparent pause site in the transcription unit of the rabbit α-globin gene (1991) (11)
- Revealing Mammalian Evolutionary Relationships by Comparative Analysis of Gene Clusters (2012) (11)
- HRI depletion cooperates with pharmacologic inducers to elevate fetal hemoglobin and reduce sickle cell formation. (2020) (11)
- The L1 family of long interspersed repetitive DNA in rabbits: Sequence, copy number, conserved open reading frames, and similarity to keratin (1989) (11)
- Genomic Landscape of TCR Alpha-Beta and TCR Gamma-Delta T-Large Granular Lymphocyte Leukemia. (2022) (10)
- Restoration of the CCAAT box or insertion of the CACCC motif activates [corrected] delta-globin gene expression. (1997) (10)
- Global predictions and tests of erythroid regulatory regions. (2003) (10)
- Mouse Alignments with BLASTZ − Human (2003) (10)
- dCaP: detecting differential binding events in multiple conditions and proteins (2014) (9)
- MultiPipMaker: Comparative Alignment Server for Multiple DNA Sequences (2005) (9)
- Dual function NFI factors control fetal hemoglobin silencing in adult erythroid cells (2022) (8)
- Survey of plastid RNA abundance during tomato fruit ripening: the amounts of RNA from the ORF 2280 region increase in chromoplasts (1991) (8)
- Comparative analysis of the locus control region of the rabbit beta-like gene cluster: HS3 increases transient expression of an embryonic epsilon-globin gene. (1993) (8)
- The rabbit alpha-like globin gene cluster is polymorphic both in the sizes of BamHI fragments and in the numbers of duplicated sets of genes. (1988) (7)
- The linkage arrangement of four rabbit beta-like globin genes. (1979) (7)
- HDAC1 is required for GATA-1 transcription activity, global chromatin occupancy and hematopoiesis (2021) (7)
- Restriction site and genetic map of Cucurbita pepo chloroplast DNA (1990) (7)
- The Evolution of Hemoglobin Studies of a very ancient protein suggest that changes in gene regulation are an important part of the evolutionary story (2016) (6)
- Validating Computer Programs for Functional Genomics in Gene Regulatory Regions (2000) (6)
- HIC2 controls developmental hemoglobin switching by repressing BCL11A transcription (2021) (6)
- Pluripotent stem cells reveal erythroid-specific activities of the GATA 1 N-terminus (2018) (6)
- CTCF blocks anti-sense transcription initiation at divergent gene promoters (2021) (6)
- Complete nucleotide sequence of the rabbit beta-like globin gene cluster. Analysis of intergenic sequences and comparison with the human beta-like globin gene cluster. (1989) (5)
- Expression of the large plastid gene, ORF2280, in tomato fruits and flowers (1994) (5)
- Computational prediction of cis-regulatory modules from multispecies alignments using Galaxy, Table Browser, and GALA. (2006) (5)
- S3V2-IDEAS: a package for normalizing, denoising and integrating epigenomic datasets across different cell types (2020) (5)
- A guide to translation of research results from model organisms to human (2016) (5)
- The structure and transcription of four linked rabbit beta-like globin genes. (1979) (5)
- Constrained sequence alignment (1993) (5)
- Chromatin structure dynamics during the mitosis-to-G1 phase transition (2019) (4)
- Positive and negative regulatory elements of the rabbit embryonic epsilon-globin gene revealed by an improved multiple alignment program and functional analysis. (1993) (4)
- Variable evolutionary signatures at the heart of enhancers (2010) (4)
- OnTAD: hierarchical domain structure reveals the divergence of activity among TADs and boundaries (2019) (4)
- Re-configuration of Chromatin Structure During the Mitosis-G1 Phase Transition (2019) (4)
- Sequences within and flanking hypersensitive sites 3 and 2 of the beta-globin locus control region required for synergistic versus additive interaction with the epsilon-globin gene promoter. (1996) (4)
- Systematic integration of GATA transcription factors and epigenomes via IDEAS paints the regulatory landscape of hematopoietic cells (2019) (4)
- Working with Molecular Genetics (2005) (3)
- Upstream regulatory region of the human embryonic beta-like globin gene, epsilon. (1994) (3)
- Whole-Genome Analysis of Gene Conversion Events (2009) (3)
- Intragenic Sequences and Proteins Regulating the Rabbit α-Globin Gene (1991) (3)
- Transcription Unit of the Rabbit 31 Globin Gene (2003) (3)
- Rabbit alpha-like and beta-like globin gene clusters: comparisons among mammalian globin gene clusters. (1987) (2)
- Genome Browser 28-Way vertebrate alignment and conservation track in the UCSC (2007) (2)
- Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes (2022) (2)
- Some lessons from ENCODE data-regulatory elements using comparative genomics : cisFinding data (2007) (2)
- Aligning Two Genomic Sequences That Contain Duplications (2009) (2)
- MRHMMs: Multivariate Regression Hidden Markov Models and the variantS (2014) (2)
- Discovering enhancers directly by activity (2014) (2)
- specificity using self-organizing maps Integrating and mining the chromatin landscape of cell-type Material Supplemental (2013) (2)
- Analysis of rabbit beta-like globin gene transcripts during development. (1983) (2)
- CTCF blocks antisense transcription initiation at divergent promoters (2022) (2)
- Species-Specific Functions For Long Noncoding RNAs During Erythropoeisis (2013) (2)
- Exploiting genetic variation to uncover rules of transcription factor binding and chromatin accessibility (2018) (2)
- The nucleotide sequence of rabbit embryonic globin gene beta 3. (1981) (2)
- physiology, biochemistry, and genetics of nongreen plastids : proceedings of the 4th Annual Penn State Symposium in Plant Physiology (May 18-20, 1989) the Pennsylvania State University (1989) (2)
- Globin Genes: Evolution (2008) (2)
- SBR-Blood: systems biology repository for hematopoietic cells (2015) (2)
- Effects of sheared chromatin length on ChIP-seq quality and sensitivity (2020) (2)
- Snapshot: clustering and visualizing epigenetic history during cell differentiation (2018) (1)
- Promoter competition in globin gene control. (2022) (1)
- Protein Phosphatase 6C (PPP6C) Loss Significantly Raises Fetal Hemoglobin Levels and Reduces Cell Sickling (2021) (1)
- Cross-species regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes (2023) (1)
- Isolated Changes in Chromatin Accessibility and Enhancer-Promoter Contacts at the β-Globin Locus Distinguish Fetal Hemoglobin Producing F-Cells from a-Cells (2021) (1)
- Expression of β-like Globin Genes During Rabbit Embryogenesis (1981) (1)
- ANALYSIS OF RABBIT β-GLOBIN GENE TRANSCRIPTS DURING DEVELOPMENT (1983) (1)
- De Novo DNA Methylation Is Associated with Granulopoiesis and Megakaryopoiesis but Not Erythropoiesis (2016) (1)
- Subject Index Vol. 52, 1989 (1989) (1)
- CLIMB: High-dimensional association detection in large scale genomic data (2020) (1)
- Epigenetics of Cellular Memory: Insights from the Chromatin Accessibility Landscape of the Mitotic Genome (2014) (1)
- A database for globin gene expression data (1995) (1)
- Comparison of Expression and Epigenetic Profiles in Human and Mouse Erythropoiesis and Megakaryopoiesis Using a Systems Biology Model (2015) (1)
- An encyclopedia of mouse DNA elements (Mouse ENCODE) (2012) (1)
- An apparent pause site in the transcription unit of the rabbit alpha-globin gene. (1991) (1)
- Genome-wide comparative analysis reveals human-mouse regulatory landscape and evolution (2015) (1)
- Rabbit Globin Pseudogene e/32 Is a Hybrid of 6- and @Globin Gene Sequence9 (1984) (1)
- dCaP: detecting differential binding events in multiple conditions and proteins (2014) (1)
- Systematic integration of GATA transcription factors and epigenomes via IDEAS paints the regulatory landscape of mouse hematopoietic cells (2019) (1)
- Identification and characterization of RBM12 as a novel regulator of fetal hemoglobin expression (2022) (1)
- Finding partners to play the music of regulation. (2016) (1)
- 1 Dynamics of the Epigenetic Landscape During Erythroid Differentiation after GATA 1 Restoration Running head : Chromatin state profiles precede gene regulation (2011) (1)
- Domain-Focused CRISPR-Cas9 Screen Identifies the E3 Ubiquitin Ligase Substrate Adaptor Protein SPOP as a Novel Repressor of Fetal Hemoglobin (2018) (1)
- Author Correction: Perspectives on ENCODE (2022) (0)
- Mouse Erythroid Cells Originate from a Megakaryocyte Precursor in Common Myeloid Progenitors (2019) (0)
- Abstract 2953: Subtype-specific and structure variation induced 3D genome alteration in acute myeloid leukemia (2022) (0)
- p-like globin gene clusters fr gene in marsupials (2016) (0)
- Alteration of genome folding via contact domain boundary insertion (2020) (0)
- Establishment of regulatory elements during erythro-megakaryopoiesis identifies hematopoietic lineage-commitment points (2018) (0)
- Transcriptional Burst Initia tion and Polymerase Pause Release Are Key Control Points of Transcriptional Regulation Graphical (2019) (0)
- 49Comparative genomics to find function in noncoding DNA (2007) (0)
- Contents, Vol. 52, 1989 (1989) (0)
- Title : Sharing data between LSDBs and central repositories (0)
- A Novel Regulatory Region of the p27 Locus Is Required for Normal Erythroid p27 Expression, and Produces a Long Noncoding RNA with No Detectable Function (2015) (0)
- THE LINKAGE ARRANGEMENT OF MAMMALIAN β-LIKE GLOBIN GENES (1979) (0)
- Complete nucleotide sequence of the rabbit beta-like globin gene cluster: insights into evolution and regulation. (1989) (0)
- A map of cis-regulatory elements and 3D genome structures in zebrafish (2020) (0)
- Differences In The Genome-Wide Epigenetic Signatures Of mRNA and Long Non-Coding RNA Genes In Mouse Erythroblasts and Megakaryocytes (2013) (0)
- A GATA-1-Regulated microRNA Cluster That Is Essential for Erythropoiesis. (2007) (0)
- It takes (LMO) 2 to tango. (2009) (0)
- A Cluster to Remember (2013) (0)
- Identifying Conserved Discriminative Motifs (2008) (0)
- Enhancer Accessibility during Erythropoiesis and Megakaryopoiesis Correlates with Lineage-Specific Gene Expression (2015) (0)
- Epigenetic and Single Cell Analyses Reveal Dual Fate Decision Points in Pre-Primed Hematopoietic Stem Cells during Erythro-Megakaryopoiesis (2017) (0)
- Dissection of BET Protein Function in a Hematopoietic Differentiation Model (2014) (0)
- Heme-Regulated Inhibitor (HRI) Activates Transcription Factor ATF4 to Promote BCL11A Transcription and Fetal Hemoglobin Silencing (2019) (0)
- Gene silencing dynamics are modulated by transiently active regulatory elements. (2023) (0)
- Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes (2022) (0)
- Functional genomics of the beta-globin gene cluster reveals novel regulatory elements in the locus control region (1999) (0)
- Sequences flanking hypersensitive sites 2,3 and 4 the β-globin locus control region are required for the optimal function of the hypersensitive sites cores (2000) (0)
- Occupancy by key transcription factors is a more accurate predictor of enhancer activity than histone modifications or chromatin accessibility (2015) (0)
- Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes (2022) (0)
- Graded Repression of PU.1 Expression by GATA Factors Influence Hematopoietic Progenitor Cell Fate (2008) (0)
- Detecting local changes in chromatin architecture with false discovery control (2020) (0)
- Long Noncoding RNAs in Erythropoiesis and Megakaryopoiesis. (2012) (0)
- Interrogating Post-Transcriptional Mechanisms of Fetal Hemoglobin Regulation (2021) (0)
- GATA-1 Represses PU.1/Sfpi-1 Gene Transcription in Erythro-Megakaryocytic Progenitors. (2007) (0)
- Validation of predicted erythroid cis-regulatory modules (2007) (0)
- Temporally Distinct Developmental Waves of Erythropoiesis from Human Pluripotent Stem Cells (2015) (0)
- alignments to identify functional elements ESPERR: Learning strong and weak signals in genomic sequence (2006) (0)
- Identification of Biologicaly Relevant Enhancers in Human Erythroid Cells (2012) (0)
- Publisher Correction: Dual function NFI factors control fetal hemoglobin silencing in adult erythroid cells (2022) (0)
- A β-Globin Locus-Intrinsic Epigenetic Mechanism Underlies Fetal Globin Production in F-Cells (2020) (0)
- A Hyperactive Transcriptional State Marks Genome Reactivation during Mitotic Exit (2015) (0)
- A Cambrian origin for globin gene regulation. (2020) (0)
- Systems Biology in Heterogenous Tissues: Integrating Multiple *Omics Datasets to Understand Hematopoietic Differentiation (2019) (0)
- Integrative detection and analysis of structural variation in cancer genomes (2018) (0)
- Examining the Role of Individual Baf Chromatin Remodeling Complex Components in Globin Gene Regulation (2022) (0)
- Let-7 Inhibits HIC2 to Control BCL11A Transcription and Hemoglobin Switching (2022) (0)
- Heme-Regulated Inhibitor (HRI) Depletion Cooperates with Pharmacologic Inducers to Strongly Elevate Fetal Hemoglobin and Reduce Sickle Cell Formation (2019) (0)
- Nuclease sensitivity of the rabbit beta-globin gene cluster (1984) (0)
- Dynamic shifts in transcription factor occupancy drive reprogramming of gene expression during hematopoietic differentiation (LB181) (2014) (0)
- Regulation of Fetal Hemoglobin Production in Adult Erythroid Cells By Protein Phosphatase 6C (PPP6C) (2022) (0)
- Narayanan large-scale analyses biologist-friendly A framework for collaborative analysis of ENCODE data : Making data (2007) (0)
- motif sitestrongly associated with evolutionary constraint on the binding Transcriptional enhancement by GATA 1-occupied DNA segments is Material Supplemental (2008) (0)
- Rabbits and Huma & Indicates That the Gene Cluster 5 ’ . wy-6p-3 ’ Predates the Mammalian Radiation 1 (1998) (0)
- Mechanisms of Polycomb Group Protein-Mediated Fetal Hemoglobin Silencing (2022) (0)
- Book Review: The Biotech Century (1999) (0)
- Domain-Focused CRISPR-Cas9 Screen Identifies Hri Kinase As a Regulator of Fetal Hemoglobin in Adult Human Erythroid Cells (2017) (0)
- differentiation after GATA 1 restoration Dynamics of the epigenetic landscape during erythroid Material (2011) (0)
- Globin Gene Clusters (2002) (0)
- Understanding Heterogeneity of Fetal Hemoglobin Induction through Comparative Analysis of Stage-Matched F- and a-Cells (2019) (0)
- Author Correction: Perspectives on ENCODE (2022) (0)
- Author Correction: Perspectives on ENCODE (2022) (0)
- GATA1 and the BET Family Protein Brd3 Form a Mitotic Bookmarking Complex (2012) (0)
- Control of Fetal Hemoglobin Levels By NFI Transcription Factors (2020) (0)
- Bayesian Modeling of Epigenetic Variation in Multiple Human Cell Types (2015) (0)
- The BET Protein BRD2 Cooperates with CTCF to Enforce a Transcriptional Boundary in Erythroid Cells (2016) (0)
- Deletion of a conserved noncoding sequence selectively reduces expression of cytokine genes over a long distance (2000) (0)
- Snapshot: a package for clustering and visualizing epigenetic history during cell differentiation (2023) (0)
- Genomic organization, chromatin structure, and transcriptional regulation of the murine Alpha Hemoglobin Stabilizing Protein (AHSP) gene (2005) (0)
- Browser 28-Way vertebrate alignment and conservation track in the UCSC data (2007) (0)
- Interrogating Histone Ace tylation and BRD 4 as Mitotic Bookmarks of Transcription Graphical Abstract Highlights (2019) (0)
- The functional landscape of humans (and mouse): Where are the gaps? (2015) (0)
- Establishment of Enhancer Elements during Erythro-Megakaryopoiesis (2016) (0)
- Systematic Integration of Epigenomic Landscapes in Human and Mouse Blood Cells to Predict Activity and Targets of Regulatory Elements (2022) (0)
- Dual function NFI factors control fetal hemoglobin silencing in adult erythroid cells (2022) (0)
- Fishing for evolutionary clues to globin gene regulation (2003) (0)
- Strategies to improve pharmacogenomic-guided treatment options for patients with β-hemoglobinopathies (2021) (0)
- Molecular basis of polycomb group protein-mediated fetal hemoglobin repression. (2023) (0)
- A guide to translation of research results from model organisms to human (2016) (0)
- Lineage-Specific Mitotic Bookmarking by Hematopoietic Transcription Factor GATA1 (2011) (0)
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