Ross Overbeek | Academic Influence

Ross Overbeek's AcademicInfluence.com Rankings

Ross Overbeek

Computer Science

#3991

World Rank

#4197

Historical Rank

#1397

USA Rank

Machine Learning

#4355

World Rank

#4405

Historical Rank

#159

USA Rank

Database

#4342

World Rank

#4516

Historical Rank

#696

USA Rank

Artificial Intelligence

#4706

World Rank

#4769

Historical Rank

#269

USA Rank

computer-science Degrees

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Computer Science

Ross Overbeek's Degrees

PhD Computer Science University of Texas at Austin
Masters Computer Science University of Texas at Austin
Bachelors Computer Science University of Texas at Austin

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Why Is Ross Overbeek Influential?

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According to Wikipedia, Ross A. Overbeek is an American computer scientist with a long tenure at the Argonne National Laboratory. He has made important contributions to mathematical logic and genomics, as well as programming, particularly in database theory and the programming language Prolog.

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Ross Overbeek's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

The RAST Server: Rapid Annotations using Subsystems Technology (2008) (9250)
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST) (2013) (3344)
The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes (2005) (1887)
RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes (2015) (1572)
The ribosomal database project (1992) (1398)
Insights into social insects from the genome of the honeybee Apis mellifera (2006) (1356)
The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus (1997) (1355)
The use of gene clusters to infer functional coupling. (1999) (1283)
fastDNAmL: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood (1994) (1152)
Complete Genome Sequence of the Methanogenic Archaeon, Methanococcus jannaschii (1996) (1149)
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center (2016) (1124)
The complete genome of the hyperthermophilic bacterium Aquifex aeolicus (1998) (1091)
PATRIC, the bacterial bioinformatics database and analysis resource (2013) (1050)
The RDP (Ribosomal Database Project) (1997) (1032)
A new version of the RDP (Ribosomal Database Project) (1999) (944)
Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis (2003) (840)
Experimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655 (2003) (732)
The winds of (evolutionary) change: breathing new life into microbiology. (1996) (578)
The Ribosomal Database Project (RDP) (1996) (559)
The genome sequence of the facultative intracellular pathogen Brucella melitensis (2001) (538)
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities (2019) (504)
Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus (2004) (500)
The genetic data environment an expandable GUI for multiple sequence analysis (1994) (482)
The genome of Methanosarcina mazei: evidence for lateral gene transfer between bacteria and archaea. (2002) (448)
The winds of (evolutionary) change: breathing new life into microbiology (1994) (417)
WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction (2000) (405)
Portable Programs for Parallel Processors (1987) (392)
The Ribosomal Database Project. (1994) (347)
Missing genes in metabolic pathways: a comparative genomics approach. (2003) (330)
Genome Sequence and Analysis of the Oral Bacterium Fusobacterium nucleatum Strain ATCC 25586 (2002) (316)
Searching for patterns in genomic data. (1997) (314)
Characterization of the Staphylococcus aureus Heat Shock, Cold Shock, Stringent, and SOS Responses and Their Effects on Log-Phase mRNA Turnover (2006) (269)
The ERGOTM genome analysis and discovery system (2003) (255)
Genes for the cytoskeletal protein tubulin in the bacterial genus Prosthecobacter (2002) (175)
SEED Servers: High-Performance Access to the SEED Genomes, Annotations, and Metabolic Models (2012) (167)
Antimicrobial Resistance Prediction in PATRIC and RAST (2016) (153)
FIGfams: yet another set of protein families (2009) (147)
Use of contiguity on the chromosome to predict functional coupling (1998) (145)
Erratum: The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus (1998) (138)
An archaeal genomic signature. (2000) (132)
Automated genome annotation and metabolic model reconstruction in the SEED and Model SEED. (2013) (130)
Accessing the SEED Genome Databases via Web Services API: Tools for Programmers (2010) (120)
A reconstruction of the metabolism of Methanococcus jannaschii from sequence data. (1997) (118)
Complexity and related enhancements for automated theorem-proving programs (1976) (115)
Problems and Experiments for and with Automated Theorem-Proving Programs (1976) (115)
Whole-genome comparative analysis of three phytopathogenic Xylella fastidiosa strains (2002) (114)
Characterizing the Effect of the Staphylococcus aureus Virulence Factor Regulator, SarA, on Log-Phase mRNA Half-Lives (2006) (112)
The metabolic pathway collection from EMP: the enzymes and metabolic pathways database (1996) (106)
Universal Protein Families and the Functional Content of the Last Universal Common Ancestor (1999) (106)
The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation (2006) (103)
Archaeal Shikimate Kinase, a New Member of the GHMP-Kinase Family (2001) (102)
The 60 kDa heat shock proteins in the hyperthermophilic archaeon Sulfolobus shibatae. (1995) (101)
The SEED: a peer-to-peer environment for genome annotation (2004) (88)
Comparative genome analysis of Bacillus cereus group genomes with Bacillus subtilis. (2005) (84)
Synergistic use of plant-prokaryote comparative genomics for functional annotations (2011) (82)
Draft sequencing and comparative genomics of Xylella fastidiosa strains reveal novel biological insights. (2002) (81)
The Ribosomal Database Project: updated description (1991) (78)
Genomic encyclopedia of sugar utilization pathways in the Shewanella genus (2010) (78)
Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus (2011) (75)
Genome analysis of F. nucleatum sub spp vincentii and its comparison with the genome of F. nucleatum ATCC 25586. (2003) (74)
PATRIC as a unique resource for studying antimicrobial resistance (2017) (74)
High-throughput comparison, functional annotation, and metabolic modeling of plant genomes using the PlantSEED resource (2014) (71)
Functional analysis of gapped microbial genomes: amino acid metabolism of Thiobacillus ferrooxidans. (2000) (70)
Assembly, Annotation, and Comparative Genomics in PATRIC, the All Bacterial Bioinformatics Resource Center. (2018) (69)
The Aurora or-parallel Prolog system (1990) (67)
Implementation of monitors with macros: a programming aid for the HEP and other parallel processors (1983) (59)
Set theory in first-order logic: Clauses for Gödel's axioms (1986) (53)
The Ribosomal Database Project. (1992) (52)
Phage Genome Annotation Using the RAST Pipeline. (2018) (51)
Automated reasoning system ITP (1984) (51)
Real Time Metagenomics: Using k-mers to annotate metagenomes (2012) (47)
Bioinformatics classification and functional analysis of PhoH homologs (2003) (47)
Scheduling OR-Parallelism: An Argonne Perspective (1988) (46)
Logic Machine Architecture: Kernel Funtions (1982) (45)
Automatic detection of subsystem/pathway variants in genome analysis (2005) (44)
An implementation of hyper-resolution (1975) (44)
Comparative Genomics of NAD Biosynthesis in Cyanobacteria (2006) (44)
Use of monitors in FORTRAN: a tutorial on the barrier, self-scheduling DO-loop, and askfor monitors (1985) (43)
Automated reasoning (2nd ed.): introduction and applications (1992) (43)
Genomes of the class Erysipelotrichia clarify the firmicute origin of the class Mollicutes (2013) (42)
From DNA to FBA: How to Build Your Own Genome-Scale Metabolic Model (2016) (41)
Annotation of bacterial and archaeal genomes: improving accuracy and consistency. (2007) (39)
Automated Reasoning Contributed to Mathematics and Logic (1990) (39)
Representation of function: the next step. (1997) (38)
Connecting genotype to phenotype in the era of high-throughput sequencing. (2011) (37)
Cohesion Group Approach for Evolutionary Analysis of TyrA, a Protein Family with Wide-Ranging Substrate Specificities (2008) (35)
Genome-scale bacterial transcriptional regulatory networks: reconstruction and integrated analysis with metabolic models (2014) (35)
Structure detection through automated covariance search (1990) (34)
Experiments with OR-Parallel Logic Programs (1987) (34)
The metabolic pathway collection: an update (1997) (34)
Analysis of the Thermotoga maritima genome combining a variety of sequence similarity and genome context tools. (2000) (31)
Subsumption, a Sometimes Undervalued Procedure (1991) (30)
Tutorial on the Warren abstract machine for computational logic (1985) (30)
A New Class of Automated Theorem-Proving Algorithms (1974) (29)
Modeling central metabolism and energy biosynthesis across microbial life (2016) (28)
Logic Machine Architecture: Inference Mechanisms (1982) (27)
Hyperparamodulation: A Refinement of Paramodulation (1980) (25)
Building the blueprint of life (2010) (24)
A machine learning-based service for estimating quality of genomes using PATRIC (2019) (23)
Data Structures and Control Architectures for Implementation of Theorem-Proving Programs (1980) (22)
Detection of Lateral Gene Transfer Events in the Prokaryotic tRNA Synthetases by the Ratios of Evolutionary Distances Method (2004) (22)
Corrigendum: The ribosomal database project: Updated description (Nucleic Acids Research (1991) 19 (2017-2021)) (1991) (21)
A Simplified Approach to the Implementation of AND-Parallelism in an OR-Parallel Environment (1988) (18)
Genome of Methanocaldococcus (Methanococcus) jannaschii. (2001) (18)
The Representation of Many–One Degrees by Decision Problems of Turing Machines (1973) (17)
A Portable Environment for Research in Automated Reasoning (1984) (16)
Experiments with resolution-based theorem-proving algorithms (1982) (16)
9th International Conference on Automated Deduction (1988) (15)
Paths to High-Performance Automated Theorem Proving (1986) (15)
Reconstruction of the Regulatory Network for Bacillus subtilis and Reconciliation with Gene Expression Data (2016) (14)
Applications of the Aurora Parallel Prolog System to Computational Molecular Biology (1993) (14)
Parallel Logic Programming for Numeric Applications (1986) (14)
An Approach to Programming Multiprocessing Algorithms on the Denelcor HEP (1983) (13)
LMA-based theorem prover (1982) (13)
Logic Programming, Proceedings of the North American Conference 1989, Cleveland, Ohio, USA, October 16-20, 1989. 2 Volumes (1989) (12)
Elucidating genomic gaps using phenotypic profiles (2014) (11)
Genomics: what is realistically achievable? (2000) (11)
Annotation of Bacterial and Archaeal Genomes: Improving Accuracy and Consistency (2007) (11)
ITP at Argonne National Laboratory (1986) (11)
The Use of Subsystems to Encode Biosynthesis of Vitamins and Cofactors (2010) (11)
An Integrated Database to Support Research on Escherichia Coli (1992) (10)
Logic Machine Architecture Inference Mechanisms: Layer 2 User Reference Manual Release 2.0 (1982) (9)
The Representation of Many—One Degrees by the Word Problem for Thue Systems (1973) (9)
Toward a Human Genome Encyclopedia (1992) (9)
George MW, Gene ER. Insights into social insects from the genome of the honeybee Apis mellifera. Nature (2006) (8)
Curation is forever: comparative genomics approaches to functional annotation (2003) (7)
In search of genome annotation consistency: solid gene clusters and how to use them (2013) (7)
Computing and Applying Atomic Regulons to Understand Gene Expression and Regulation (2016) (7)
Maximum likelihood genetic sequence reconstruction from oligo content (1994) (7)
Reasoning about equality (1985) (7)
Exploitation of parallel processing for implementing high-performance deduction systems (1992) (7)
Non-horn problems (2004) (7)
Implementation of a parallel processing system for inference of phylogenetic trees (1993) (6)
A DML for Entity-Relationship Models (1979) (6)
A technique for achieving portability among multiprocessors: Implementation on the Lemur (1985) (6)
prototyping databases in Prolog (1990) (6)
Accessing integrated genomic data using GenoBase: A tutorial, Part 1 (1993) (5)
A tutorial on the construction of high-performance resolution/paramodulation systems (1990) (5)
Logic Programming and Genetic Sequence Analysis: a Tutorial (1992) (5)
Item Tracking Entity-Relationship Models (1981) (4)
Overview of the Integrated Genomic Data system (IGD) (1992) (4)
The CADE-11 competitions: A personal view (1993) (4)
A High-Performance Parallel Theorem Prover (1990) (4)
Enabling comparative modeling of closely related genomes: example genus Brucella (2014) (4)
Overview of GRACE-a database system for analysis of multiple genomes (1993) (4)
A parallel adaptive numerical scheme for hyperbolic systems for conservation laws (1985) (4)
Challenges in large scale distributed computing: bioinformatics (2005) (4)
Short note on achievable LIP rates using the Warren Abstract Prolog Machine (1984) (4)
Towards microbial data integration (1997) (4)
A practical design methodology for the implementation of IMS databases, using the entity-relationship model (1980) (4)
GenoGraphics for OpenWindows (1992) (3)
Assembler language with ASSIST and ASSIST/I (1976) (3)
Proceedings of the 9th International Conference on Automated Deduction (1988) (3)
The role of integrated databases in microbial genome sequence analysis and metabolic reconstruction (1997) (3)
Research topics: multiprocessing algorithms for computational logic (1984) (3)
Logic programming on the HEP (1985) (3)
Searching for Genomic Organizational Motifs: Explorations of the Escherichia Coli Chromosome (1993) (3)
Tools for the Creation of IMS Database Designs from Entity-Relationship Diagrams (1983) (3)
A foray into combinatory logic (1986) (3)
New directions in software for advanced computer architectures (1984) (2)
Supervised extraction of near-complete genomes from metagenomic samples: A new service in PATRIC (2021) (2)
Use of Monitors in Pascal on the Lemur: a Tutorial on the Barrier, Self-Scheduling FOR-Loop, and Askfor Monitors (1984) (2)
Effective utilization of OR-parallelism: A modest proposal (1988) (2)
A theorem-proving language for experimentation (1974) (2)
The Design of Entity-Relationship Models for General Ledger Systems (1985) (2)
Formula databases for high-performance resolution/paramodulation systems (1994) (2)
Automated reasoning and knowledge base design in the scientific programming environment (1985) (2)
Querying genomic databases (1991) (2)
An automated procedure for covariation-based detection of RNA structure (1989) (2)
Quasi-Automatic Parallelization : a Simplified Approach to Multiprocessing (1985) (2)
A parallel processing approach for implementing high-performance first-order logic deduction systems (1989) (2)
Generating alignments of genetic sequences (1989) (2)
Derivation of efficient parallel programs: An example from genetic sequence analysis (1990) (2)
Databases and automated reasoning (1985) (2)
Extraction of near-complete genomes from metagenomic samples: a new service in PATRIC (2019) (2)
Entity-Relationship model for nuclear power plants (1985) (1)
Role of multiprocessors in the nuclear power industry: comments on determining factors (1985) (1)
Fast phylogenetic analysis on a massively parallel machine (1994) (1)
The Integration of Curated Biological Databases (1994) (1)
Assembler language with ASSIST (1983) (1)
PARALLEL ADAPTIVE NUMERICAL SCHEMES FOR HYPERBOLIC SYSTEMS OF CONSERVATION LAWS* (1987) (1)
A primer on rapid prototyping of genomic databases in Prolog (1992) (1)
GenoGraphics for OpenWindows{trademark} (1992) (1)
Moving to a higher level of abstraction. (2007) (1)
A Peer-to-Peer Environment for Annotation of Genomes: The SEED (2004) (1)
Aligning Multiple RNA Sequences (1991) (1)
Reconciling gene expression data with regulatory network models – a stimulon-based approach for integrated metabolic and regulatory modeling of Bacillus subtilis (2014) (1)
Geometric specification of scheduling constraints: A simplified approach to multiprocessing (1988) (0)
Comparative analysis of genomic data: A global look at structural and regulatory features (1993) (0)
Addressing the Computational Needs of Genome Projects (1990) (0)
Resolution, Refinements, andSearchStrategies: AComparative Study (1976) (0)
OP-CBIO120297 3316..3317 (2012) (0)
Practical issues relating to the internal database predicates in an OR-parallel Prolog: Extensions and useful hacks (1988) (0)
Aligning Multiple RNA (1991) (0)
Casting Annotation as an Optimization Problem (2010 JGI/ANL HPC Workshop) (2010) (0)
An Integrative Approach to Energy, Carbon, and Redox Metabolism in the Cyanobacterium Synechocystis sp. PCC 6803. Special Report (2003) (0)
Metabolic pathway interface to molecular biology databases (1998) (0)
Mycoplasma capricolum Genome Project (1998) (0)
Reconstruction of regulatory network models and reconciliation with gene expression data (2015) (0)
Contents " It Couldn ' t Be Made Into a Really Good Movie " The Films of Ayn Rand (2010) (0)
Using the National Microbial Pathogen Data Resource (2006) (0)
Modeling central metabolism and energy biosynthesis across microbial life (2016) (0)
Softwarethe SEED Genome Databases via Web Services API: Tools for Programmers (2010) (0)
LMA/ITP. Logic Machine Architecture for UNIX (1992) (0)
9th International Conference on Automated Deduction : Argonne, Illinois, USA, May 23-26, 1988 : proceedings (1988) (0)
Assembler language with ASSIST and ASSIST/I (3rd ed.) (1986) (0)
Predicates in an OR-Parallel Prolog : 1 , , 8 Extensions and Useful (2015) (0)
LMA/ITP. Logic Machine Architecture (1984) (0)
Connecting Sequence Data to Virulence Factors in Streptococcus Genomes (2014) (0)
WIT/WIT2: Metabolic Reconstruction Systems (2002) (0)
The genome sequence of the pathogen Brucella melitensis (2016) (0)
Construction of an integrated database to support genomic sequence analysis (1999) (0)
Problems andExperiments forandwithAutomated Theorem-Proving Prograrms (1976) (0)
Pieper FIGfams : Yet Another Set of Protein Families (2009) (0)
The Role of Logic Programming in the 21st Century - Panel Position Paper (1992) (0)
Data Management: A Practical View (Panel) (1983) (0)
An approach to implementing state space searches on heterogeneous systems of multiprocessors (1987) (0)
An Integrative Approach to Energy Carbon and Redox Metabolism In Cyanobacterium Synechocystis (2003) (0)
Introduction to COBOL: A Primer and a Programmer's Guide (1985) (0)
Users guide and tutorial for PC-GenoGraphics: Version 1 (1992) (0)
Systems Biology from an Information Technology Perspective: Linking Diverse Biological Data Sources: Functional Implications of Alternative Designs for Genetic Switches and Signal Transduction Modules: Discovery of Disease Markers Using a Systems Biology Platform: Dr. a Systems Biology Approach for (2003) (0)
Wos and automated deduction at ANL: the ethos (1997) (0)
Book review (2004) (0)
A machine learning-based service for estimating quality of genomes using PATRIC (2019) (0)
Introduction to COBOL: A primer and programming guide (1986) (0)
Future Enhancements for Automated Reasoning Programs (2010) (0)

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