Sebastian Bonhoeffer
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Full Professor in Theoretical Biology at the ETH Zurich
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Why Is Sebastian Bonhoeffer Influential?
(Suggest an Edit or Addition)According to Wikipedia, Sebastian Bonhoeffer is a German biologist at the ETH Zürich and Principal of the Collegium Helveticum. Life and Works Bonhoeffer studied cello in Basel under Heinrich Schiff and physics in Munich und Vienna. In 1995, he did his doctorate with Martin A. Nowak under Robert May at the Institute of Zoology at the University of Oxford on the population dynamics and evolution of viral diseases. He worked as a postdoctoral fellow at the University of Oxford and Rockefeller University. In 1998, he was appointed junior group leader at the Friedrich Miescher Institute for Biomedical Research in Basel. In 2001, Sebastian Bonhoeffer was awarded a research professorship by the Swiss National Science Foundation at ETH Zurich. He has been Professor of Theoretical Biology at the Department of Environmental Systems Science and since 2005 and Director of the Collegium Helveticum since 2020.
Sebastian Bonhoeffer's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Viral dynamics in human immunodeficiency virus type 1 infection (1995) (2904)
- Cooperation and Competition in the Evolution of ATP-Producing Pathways (2001) (1165)
- Viral dynamics in hepatitis B virus infection. (1996) (968)
- Analysis of Total Human Immunodeficiency Virus (HIV)-Specific CD4+ and CD8+ T-Cell Responses: Relationship to Viral Load in Untreated HIV Infection (2001) (781)
- Virus dynamics and drug therapy. (1997) (607)
- Rapid production and clearance of HIV-1 and hepatitis C virus assessed by large volume plasma apheresis (1999) (491)
- Evaluating treatment protocols to prevent antibiotic resistance. (1997) (475)
- Global trends in antimicrobial resistance in animals in low- and middle-income countries (2019) (462)
- Viral dynamics in vivo: limitations on estimates of intracellular delay and virus decay. (1996) (437)
- Spatial games and the maintenance of cooperation. (1994) (435)
- Birth–death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV) (2012) (404)
- Rapid turnover of T lymphocytes in SIV-infected rhesus macaques. (1998) (387)
- Reducing antimicrobial use in food animals (2017) (358)
- Dynamic variation in cycling of hematopoietic stem cells in steady state and inflammation (2011) (285)
- Anti-viral drug treatment: dynamics of resistance in free virus and infected cell populations. (1997) (279)
- MORE SPATIAL GAMES (1994) (278)
- Practical considerations for measuring the effective reproductive number, Rt (2020) (271)
- HIV-1 Antigen–specific and –nonspecific B Cell Responses Are Sensitive to Combination Antiretroviral Therapy (1998) (259)
- Evidence for Positive Epistasis in HIV-1 (2004) (247)
- Population biology, evolution, and infectious disease: convergence and synthesis. (1999) (231)
- Virulence and Pathogenesis of HIV-1 Infection: An Evolutionary Perspective (2014) (225)
- The HIV coreceptor switch: a population dynamical perspective. (2005) (217)
- Population biological principles of drug-resistance evolution in infectious diseases. (2011) (213)
- The effect of opinion clustering on disease outbreaks (2008) (210)
- Production of resistant HIV mutants during antiretroviral therapy. (2000) (201)
- Human immunodeficiency virus drug therapy and virus load (1997) (199)
- Estimating the basic reproductive number from viral sequence data. (2012) (197)
- Antagonism between Bacteriostatic and Bactericidal Antibiotics Is Prevalent (2014) (195)
- Evolution of cooperation by generalized reciprocity (2005) (195)
- The virological and immunological consequences of structured treatment interruptions in chronic HIV-1 infection (2001) (191)
- HIV-1 Evolution and Disease Progression (1996) (185)
- Experimental Tests for an Evolutionary Trade‐Off between Growth Rate and Yield in E. coli (2006) (183)
- A systems analysis of mutational effects in HIV-1 protease and reverse transcriptase (2011) (180)
- Evolution of Cross‐Feeding in Microbial Populations (2004) (177)
- Emergence of Drug-Resistant Influenza Virus: Population Dynamical Considerations (2006) (176)
- Molecular epidemiology reveals long-term changes in HIV type 1 subtype B transmission in Switzerland. (2010) (175)
- An evolutionary scenario for the transition to undifferentiated multicellularity (2003) (170)
- Structured antiretroviral treatment interruptions in chronically HIV-1-infected subjects (2001) (169)
- Causes of HIV diversity (1995) (168)
- Temporal Analyses of Virus Replication, Immune Responses, and Efficacy in Rhesus Macaques Immunized with a Live, Attenuated Simian Immunodeficiency Virus Vaccine (1998) (167)
- EVOLUTION OF VIRULENCE IN A HETEROGENEOUS HOST POPULATION (2000) (165)
- Epistasis between deleterious mutations and the evolution of recombination. (2007) (161)
- Practical considerations for measuring the effective reproductive number, Rt (2020) (159)
- The state of affairs in the kingdom of the Red Queen. (2008) (153)
- Compensation of Fitness Costs and Reversibility of Antibiotic Resistance Mutations (2010) (152)
- Risks and benefits of structured antiretroviral drug therapy interruptions in HIV-1 infection (2000) (146)
- The frequency of resistant mutant virus before antiviral therapy (1998) (143)
- Emergence of minor populations of human immunodeficiency virus type 1 carrying the M184V and L90M mutations in subjects undergoing structured treatment interruptions. (2003) (140)
- Ambiguous Nucleotide Calls From Population-based Sequencing of HIV-1 are a Marker for Viral Diversity and the Age of Infection (2011) (139)
- Dose–dependent infection rates of parasites produce the Allee effect in epidemiology (2002) (139)
- Phylogenetic Approach Reveals That Virus Genotype Largely Determines HIV Set-Point Viral Load (2010) (133)
- The Evolution of Connectivity in Metabolic Networks (2005) (130)
- Mutation and the evolution of virulence (1994) (129)
- Salmonella persisters promote the spread of antibiotic resistance plasmids in the gut (2019) (124)
- Uncovering epidemiological dynamics in heterogeneous host populations using phylogenetic methods (2013) (117)
- Pre-existence and emergence of drug resistance in HIV-1 infection. (1997) (117)
- Evolution and emergence of infectious diseases in theoretical and real-world networks (2015) (116)
- Eight challenges in phylodynamic inference (2015) (114)
- Exploring the Complexity of the HIV-1 Fitness Landscape (2012) (114)
- Spatial models of virus-immune dynamics. (2005) (113)
- The curse of the pharaoh : the evolution of virulence in pathogens with long living propagules (1996) (113)
- Quantification of Cell Turnover Kinetics Using 5-Bromo-2′-deoxyuridine1 (2000) (108)
- Viral quasi-species and recombination (1996) (108)
- Stochastic or deterministic: what is the effective population size of HIV-1? (2006) (107)
- Estimating the Stoichiometry of Human Immunodeficiency Virus Entry (2008) (101)
- Rapid Clearance of Simian Immunodeficiency Virus Particles from Plasma of Rhesus Macaques (1999) (97)
- Inferring Epidemic Contact Structure from Phylogenetic Trees (2012) (96)
- Spatial Heterogeneity in Drug Concentrations Can Facilitate the Emergence of Resistance to Cancer Therapy (2014) (94)
- Quantification of infectious HIV-1 plasma viral load using a boosted in vitro infection protocol. (2004) (94)
- Evolution of complexity in signaling pathways (2006) (93)
- Recombination in HIV and the evolution of drug resistance: for better or for worse? (2004) (93)
- The path of least resistance: aggressive or moderate treatment? (2014) (90)
- Stochastic Interplay between Mutation and Recombination during the Acquisition of Drug Resistance Mutations in Human Immunodeficiency Virus Type 1 (2005) (89)
- Cycling Empirical Antibiotic Therapy in Hospitals: Meta-Analysis and Models (2014) (87)
- Antibiotic-Resistant Neisseria gonorrhoeae Spread Faster with More Treatment, Not More Sexual Partners (2016) (84)
- Evolutionary rescue: linking theory for conservation and medicine (2014) (81)
- The evolution of groups of cooperating bacteria and the growth rate versus yield trade-off. (2005) (81)
- HIV results in the frame (1995) (78)
- Intra-host versus inter-host selection: viral strategies of immune function impairment. (1994) (77)
- Interchromatid and Interhomolog Recombination in Arabidopsis thaliana (2004) (77)
- Rapid Parasite Adaptation Drives Selection for High Recombination Rates (2008) (76)
- Using an Epidemiological Model for Phylogenetic Inference Reveals Density Dependence in HIV Transmission (2013) (75)
- Persistence of Transmitted HIV-1 Drug Resistance Mutations Associated with Fitness Costs and Viral Genetic Backgrounds (2015) (75)
- The role of migration and domestic transmission in the spread of HIV-1 non-B subtypes in Switzerland. (2011) (74)
- An evolutionary perspective on the systems of adaptive immunity (2018) (74)
- COVID-19 infectivity profile correction. (2020) (72)
- Glancing behind virus load variation in HIV-1 infection. (2003) (63)
- On the evolution of claustral colony founding in ants (2003) (60)
- Death and population dynamics affect mutation rate estimates and evolvability under stress in bacteria (2017) (60)
- Quantifying the impact of quarantine duration on COVID-19 transmission (2020) (59)
- Humoral immunity to HIV-1: kinetics of antibody responses in chronic infection reflects capacity of immune system to improve viral set point. (2004) (58)
- Inference of Epidemiological Dynamics Based on Simulated Phylogenies Using Birth-Death and Coalescent Models (2014) (58)
- Evolution of Stress Response in the Face of Unreliable Environmental Signals (2012) (57)
- Entry and Transcription as Key Determinants of Differences in CD4 T-Cell Permissiveness to Human Immunodeficiency Virus Type 1 Infection (2004) (57)
- The effect of multifunctionality on the rate of evolution in yeast. (2006) (56)
- Stable virulence levels in the HIV epidemic of Switzerland over two decades (2006) (56)
- Long-term trends of HIV type 1 drug resistance prevalence among antiretroviral treatment-experienced patients in Switzerland. (2009) (55)
- Effect of Varying Epistasis on the Evolution of Recombination (2006) (55)
- A research agenda for digital proximity tracing apps. (2020) (52)
- Simulating the evolution of signal transduction pathways. (2006) (51)
- Procedures for reliable estimation of viral fitness from time-series data (2002) (51)
- Passive infusion of immune serum into simian immunodeficiency virus-infected rhesus macaques undergoing a rapid disease course has minimal effect on plasma viremia. (2000) (50)
- Informed Switching Strongly Decreases the Prevalence of Antibiotic Resistance in Hospital Wards (2011) (49)
- Neutral drift and polymorphism in gene-for-gene systems. (2005) (48)
- Phenotypic changes in drug susceptibility associated with failure of human immunodeficiency virus type 1 (HIV-1) triple combination therapy. (1999) (47)
- Error Thresholds on Correlated Fitness Landscapes (1993) (47)
- Can high-risk fungicides be used in mixtures without selecting for fungicide resistance? (2013) (46)
- On the relationship between serial interval, infectiousness profile and generation time (2020) (44)
- Modeling antibiotic treatment in hospitals: A systematic approach shows benefits of combination therapy over cycling, mixing, and mono-drug therapies (2017) (43)
- Plasmid- and strain-specific factors drive variation in ESBL-plasmid spread in vitro and in vivo (2020) (43)
- Pre-existence and emergence of drug resistance in a generalized model of intra-host viral dynamics. (2012) (42)
- Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics (2018) (42)
- Estimation and worldwide monitoring of the effective reproductive number of SARS-CoV-2 (2020) (41)
- A stochastic model for primary HIV infection: optimal timing of therapy. (1999) (41)
- Quantification of In Vivo Replicative Capacity of HIV‐1 in Different Compartments of Infected Cells (2001) (41)
- Assessing Predicted HIV-1 Replicative Capacity in a Clinical Setting (2011) (41)
- Virus evolution: The importance of being erroneous (2002) (40)
- African descent is associated with slower CD4 cell count decline in treatment-naive patients of the Swiss HIV Cohort Study (2009) (40)
- The Red Queen and the persistence of linkage-disequilibrium oscillations in finite and infinite populations (2007) (39)
- RNA multi-structure landscapes (1993) (39)
- Robustness of cooperation (1996) (38)
- Contribution of recombination to the evolutionary history of HIV. (2015) (38)
- A combined within-host and between-hosts modelling framework for the evolution of resistance to antimalarial drugs (2016) (38)
- Signal transduction networks: topology, response and biochemical processes. (2006) (38)
- The Role of Recombination for the Coevolutionary Dynamics of HIV and the Immune Response (2011) (37)
- Decelerating Decay of Latently Infected Cells during Prolonged Therapy for Human Immunodeficiency Virus Type 1 Infection (2002) (37)
- Evolutionary Consequences of Tradeoffs between Yield and Rate of ATP Production (2002) (37)
- On the Causes of Selection for Recombination Underlying the Red Queen Hypothesis (2009) (37)
- Recombination Accelerates Adaptation on a Large-Scale Empirical Fitness Landscape in HIV-1 (2014) (36)
- Dissecting HIV Virulence: Heritability of Setpoint Viral Load, CD4+ T-Cell Decline, and Per-Parasite Pathogenicity (2017) (35)
- Resistance to antimicrobial chemotherapy: a prescription for research and action. (1998) (34)
- On Being the Right Size: The Impact of Population Size and Stochastic Effects on the Evolution of Drug Resistance in Hospitals and the Community (2011) (34)
- Detection of antibiotic resistance is essential for gonorrhoea point-of-care testing: a mathematical modelling study (2017) (34)
- The evolution of network topology by selective removal (2005) (34)
- Spatial Games and Evolution of Cooperation (1995) (33)
- Red Queen Dynamics with Non-Standard Fitness Interactions (2009) (33)
- The effect of population structure on the emergence of drug resistance during influenza pandemics (2007) (32)
- Why There Are No Essential Genes on Plasmids. (2014) (32)
- Mutation accumulation in space and the maintenance of sexual reproduction. (2006) (31)
- Rapid Viral Decay in Simian Immunodeficiency Virus-Infected Macaques Receiving Quadruple Antiretroviral Therapy (2006) (31)
- Effective polyploidy causes phenotypic delay and influences bacterial evolvability (2017) (30)
- Assessing the impact of adherence to anti-retroviral therapy on treatment failure and resistance evolution in HIV (2012) (30)
- Human Immunodeficiency Virus Type 1 Fitness Is a Determining Factor in Viral Rebound and Set Point in Chronic Infection (2003) (29)
- Developing smarter host mixtures to control plant disease (2015) (29)
- Quantitative constraints on the scope of negative selection. (2003) (29)
- Metabolically cohesive microbial consortia and ecosystem functioning (2020) (28)
- No signs of hidden language in noncoding DNA. (1996) (28)
- Recombination and drug resistance in HIV: population dynamics and stochasticity. (2009) (27)
- Population Heterogeneity in Mutation Rate Increases the Frequency of Higher-Order Mutants and Reduces Long-Term Mutational Load (2016) (27)
- The role of epistasis on the evolution of recombination in host-parasite coevolution. (2009) (26)
- Emergence of Resistance to Fungicides: The Role of Fungicide Dose. (2017) (26)
- High Epitope Expression Levels Increase Competition between T Cells (2006) (26)
- Residual Viral Replication during Antiretroviral Therapy Boosts Human Immunodeficiency Virus Type 1-Specific CD8+ T-Cell Responses in Subjects Treated Early after Infection (2002) (25)
- HumanImmunodeficiency Virus Type 1 Fitness Is a Determining Factor in ViralRebound and Set Point in ChronicInfection (2003) (25)
- High Heritability Is Compatible with the Broad Distribution of Set Point Viral Load in HIV Carriers (2015) (25)
- Social meets molecular: Combining phylogenetic and latent class analyses to understand HIV-1 transmission in Switzerland. (2014) (24)
- The Role of Adherence and Retreatment in De Novo Emergence of MDR-TB (2016) (23)
- Nested model reveals potential amplification of an HIV epidemic due to drug resistance. (2013) (23)
- How Good Are Statistical Models at Approximating Complex Fitness Landscapes? (2016) (22)
- Clonal dominance and transplantation dynamics in hematopoietic stem cell compartments (2017) (22)
- Viral Dynamics and In Vivo Fitness of HIV-1 in the Presence and Absence of Enfuvirtide (2008) (22)
- Rotating antibiotics does not minimize selection for resistance. (2010) (22)
- Models of viral kinetics and drug resistance in HIV-1 infection. (1998) (20)
- Reversing resistance: different routes and common themes across pathogens (2017) (19)
- Modelling cytomegalovirus replication patterns in the human host: factors important for pathogenesis (2006) (19)
- Comparing treatment strategies to reduce antibiotic resistance in an in vitro epidemiological setting (2021) (19)
- Weighting for sex acts to understand the spread of STI on networks. (2012) (18)
- Fixation probability of mobile genetic elements such as plasmids. (2013) (18)
- Short-term activity cycles impede information transmission in ant colonies (2017) (18)
- HIV replication elicits little cytopathic effects in vivo: Analysis of surrogate markers for virus production, cytotoxic T cell response and infected cell death (2006) (17)
- Predicting the Evolution of Sex on Complex Fitness Landscapes (2009) (17)
- Antibacterial Effects of Antiretrovirals, Potential Implications for Microbiome Studies in HIV (2017) (17)
- Evolutionary mechanisms that determine which bacterial genes are carried on plasmids (2020) (17)
- Quantification of in vivo replicative capacity of HIV-1 in different compartments of infected cells. (2001) (17)
- PLASMIDS AND EVOLUTIONARY RESCUE BY DRUG RESISTANCE (2014) (16)
- HIV results in the frame. Results confirmed. (1995) (16)
- Invasiveness of plant pathogens depends on the spatial scale of host distribution. (2016) (16)
- Influence of recombination on acquisition and reversion of immune escape and compensatory mutations in HIV-1. (2016) (15)
- Guanine-adenine bias: a general property of retroid viruses that is unrelated to host-induced hypermutation. (2005) (15)
- Potential Pitfalls in Estimating Viral Load Heritability. (2016) (15)
- Epistasis and Pleiotropy Affect the Modularity of the Genotype–Phenotype Map of Cross-Resistance in HIV-1 (2016) (15)
- Explaining "linguistic features" of noncoding DNA. (1996) (14)
- Can live attenuated virus work as post-exposure treatment? (1995) (14)
- Virus load and antigenic diversity. (1997) (13)
- Estimating the Fitness Cost of Escape from HLA Presentation in HIV-1 Protease and Reverse Transcriptase (2012) (13)
- Bacterial growth properties at low optical densities (2009) (13)
- Virus-induced target cell activation reconciles set-point viral load heritability and within-host evolution. (2013) (12)
- Adaptive Dynamics of Infectious Diseases: Managing Antibiotic Resistance: What Models Tell Us? (2002) (12)
- Quantifying the impact of treatment history on plasmid-mediated resistance evolution in human gut microbiota (2019) (12)
- HIV coreceptor usage and drug treatment. (2002) (12)
- Contribution of Peaks of Virus Load to Simian Immunodeficiency Virus Pathogenesis (2002) (11)
- Epitope down-modulation as a mechanism for the coexistence of competing T-cells. (2005) (11)
- Is antimicrobial resistance evolution accelerating? (2020) (11)
- Pathogen invasion-dependent tissue reservoirs and plasmid-encoded antibiotic degradation boost plasmid spread in the gut (2021) (11)
- Modeling antimicrobial cycling and mixing: Differences arising from an individual-based versus a population-based perspective. (2017) (10)
- Mathematical approaches in the study of viral kinetics and drug resistance in HIV-1 infection. (2003) (10)
- A time resolved clustering method revealing longterm structures and their short-term internal dynamics (2019) (9)
- Principal component analysis of general patterns of HIV-1 replicative fitness in different drug environments. (2010) (9)
- Test-trace-isolate-quarantine (TTIQ) intervention strategies after symptomatic COVID-19 case identification (2022) (9)
- Contact patterns reveal a stable dynamic community structure with fission-fusion dynamics in wild house mice (2020) (9)
- Intra-Host Dynamics and Evolution of HIV Infection (2008) (9)
- Estimating the cumulative incidence of SARS-CoV-2 with imperfect serological tests: Exploiting cutoff-free approaches (2020) (8)
- ON THE EVOLUTION OF SEXUAL REPRODUCTION IN HOSTS COEVOLVING WITH MULTIPLE PARASITES (2010) (8)
- Assessing the public health impact of tolerance-based therapies with mathematical models (2016) (8)
- Estimating plasmid conjugation rates: a new computational tool and a critical comparison of methods (2020) (8)
- Stochastic Gene Expression Influences the Selection of Antibiotic Resistance Mutations (2019) (8)
- MPN patients with low mutant JAK2 allele burden show late expansion restricted to erythroid and megakaryocytic lineages. (2020) (7)
- Evolution of drug resistance in malaria parasites (2012) (7)
- Virus load and antigenic diversity (1997) (6)
- From “What Is?” to “What Isn't?” Computational Biology (2015) (6)
- Antibiotic treatment protocols revisited: the challenges of a conclusive assessment by mathematical modelling (2021) (6)
- Antibiotic treatment protocols revisited: The challenges of a conclusive assessment by mathematical modeling (2018) (5)
- Cancer-induced immunosuppression can enable effectiveness of immunotherapy through bistability generation: A mathematical and computational examination (2018) (5)
- Multidrug Resistance Dynamics in Salmonella in Food Animals in the United States: An Analysis of Genomes from Public Databases (2021) (5)
- Extended-spectrum beta-lactamase antibiotic resistance plasmids have diverse transfer rates and can be spread in the absence of selection (2019) (5)
- Estimating seroprevalence with imperfect serological tests: exploiting cutoff-free approaches (2020) (5)
- How to develop smarter host mixtures to control plant disease (2014) (4)
- Turnover in Life-Strategies Recapitulates Marine Microbial Succession Colonizing Model Particles (2021) (4)
- Estimating the rate of plasmid transfer in liquid mating cultures (2020) (4)
- Plasmid co-infection: linking biological mechanisms to ecological and evolutionary dynamics (2021) (4)
- The effect of spatial scales on the reproductive fitness of plant pathogens (2014) (3)
- Quantifying the impact of test-trace-isolate-quarantine (TTIQ) strategies on COVID-19 transmission (2020) (3)
- The importance of being erroneous (2002) (3)
- Host population structure impedes reversion to drug sensitivity after discontinuation of treatment (2017) (3)
- SIR models of epidemics (2015) (3)
- Response to Comment on "Evidence for Positive Epistasis in HIV-1" (2006) (3)
- Estimating seroprevalence with imperfect serological tests: a cutoff-free approach (2020) (3)
- Microbial metabolically cohesive consortia and ecosystem functioning (2019) (3)
- Using 5-Bromo-2 Quantification of Cell Turnover Kinetics (2000) (2)
- Estimating the heritability of viral traits using phylogenetic trees (2016) (2)
- Ecological effects of stress drive bacterial evolvability under sub-inhibitory antibiotic treatments (2020) (2)
- Research on infectious disease dynamics. Introduction. (2009) (2)
- Short communication: HIV type 2 dynamics. (2005) (2)
- Quantifying the influence of space on social group structure (2020) (2)
- Hematopoietic Stem Cells Increase Quiescence during Aging (2019) (2)
- Response to Bandeira and Faro: Closing the circle of constraints. (2003) (1)
- PLOS Computational Biology 2017 Reviewer and Editorial Board Thank You (2018) (1)
- The competition dynamics of resistant and sensitive infections (2021) (1)
- Increase in antimicrobial resistance in Escherichia coli in food animals between 1980 and 2018 assessed using genomes from public databases. (2021) (1)
- The effect of sequencing and assembly on the inference of horizontal gene transfer on chromosomal and plasmid phylogenies (2021) (1)
- Epidemiological and evolutionary consequences of CRISPR-Cas reactivity (2021) (1)
- Antibiotic resistance detection is essential for gonorrhoea point-of-care testing: A mathematical modelling study (2017) (1)
- A Genome-Scale Metabolic Model of Marine Heterotroph Vibrio splendidus Strain 1A01 (2023) (1)
- On the role of resonance in drug failure under HIV treatment interruption (2013) (1)
- Acknowledgment of Guest Editors, 2019 (2019) (1)
- PLOS Computational Biology 2016 Reviewer and Editorial Board Thank You (2017) (1)
- On the role of resonance in drug failure under HIV treatment interruption (2013) (1)
- The search for universality in evolutionary landscapes: Comment on "From genotypes to organisms: State-of-the-art and perspectives of a cornerstone in evolutionary dynamics" by Susanna Manrubia, José A. Cuesta, et al. (2021) (1)
- ARC: An Open Web-Platform for Request/Supply Matching for a Prioritized and Controlled COVID-19 Response (2021) (1)
- A random walk from the cello to the lab (1999) (1)
- A global map of antimicrobial resistance in animals raised for food (2019) (0)
- Systematic Review Protocol: Combining antibiotics to curb antibiotic resistance: A systematic review and meta-analysis (2020) (0)
- estimateR: An R package to estimate and monitor the effective reproductive number (2022) (0)
- Hematopoietic Stem Cell Cycling Dynamics In Steady State and Upon Hematopoietic Challenge (2010) (0)
- Obstruction Late After Repair of Congenital Heart Defects Physiological and Clinical Consequences of Relief of Right Ventricular Outflow (2006) (0)
- Population heterogeneity in mutation rate increases mean fitness and the frequency of higher order mutants (2016) (0)
- Evolutionary Origin and Consequences of Design Properties of Metabolic Networks (2009) (0)
- Absence of Infection in a Neonate after Possible Exposure to Sin Nombre Hantavirus in Breast Milk (1999) (0)
- Author response: Quantifying the impact of quarantine duration on COVID-19 transmission (2021) (0)
- Modeling antimicrobial cycling and mixing: Differences arising from an individual-based versus a population-based perspective (2016) (0)
- Salmonella persisters promote the spread of antibiotic resistance plasmids in the gut (2019) (0)
- P3.212 Antibiotic resistance detection is essential for gonorrhoea point-of-care testing: a mathematical modelling study (2017) (0)
- Faculty Opinions recommendation of Anciently asexual bdelloid rotifers escape lethal fungal parasites by drying up and blowing away. (2010) (0)
- Book Review:Evolutionary Medicine Wenda R. Trevathan, E. O. Smith, James J. McKenna (2001) (0)
- Perspective Virulence and Pathogenesis of HIV-1 Infection : An Evolutionary (2014) (0)
- Explaining "linguistic features" of noncoding DNA. (1996) (0)
- 001.1 Evolution and spread of antibiotic-resistant gonorrhoea (2015) (0)
- Faculty Opinions recommendation of Antigenic diversity, transmission mechanisms, and the evolution of pathogens. (2009) (0)
- Back Matter (1960) (0)
- Dissecting HIV Virulence : Heritability of Setpoint Viral Load , CD 4 + T-Cell Decline , and Per-Parasite Pathogenicity BERTELS (2018) (0)
- Correction: Practical considerations for measuring the effective reproductive number, Rt (2021) (0)
- Plasmid- and strain-specific factors drive variation in ESBL-plasmid spread in vitro and in vivo (2020) (0)
- Evolution of drug resistance in malaria parasites (2012) (0)
- Potential pitfalls in estimating viral load heritability (2016) (0)
- ESBL Displace: A Protocol for an Observational Study to Identify Displacing Escherichia coli Strain Candidates from ESBL-Colonized Travel Returners Using Phenotypic, Genomic Sequencing and Metagenome Analysis (2023) (0)
- Constrained optimisation of divisional load in hierarchically-organised tissues during homeostasis (2021) (0)
- Applying mixture model methods to SARS-CoV-2 serosurvey data from Geneva (2022) (0)
- Corrigendum to “Weighting for sex acts to understand the spread of STI on networks” [J. Theor. Biol. 311 (2012) 46–53] (2013) (0)
- A Genome-Scale Metabolic Model of Marine Heterotroph Vibrio splendidus sp. 1A01 (2022) (0)
- TECHNICAL COMMENT ABSTRACTS (2006) (0)
- Constrained optimization of divisional load in hierarchically organized tissues during homeostasis (2022) (0)
- MDR3 Mutations: A Glimpse Into Pandora's Box and the Future of Canalicular Pathophysiology (2001) (0)
- Evolution Spatial games and the maintenance of cooperation (0)
- THE FLOURISHING OF HUMAN LIFE: FOSTERING A DIALOGUE BETWEEN THEOLOGY AND THE CAPABILITIES APPROACH THROUGH DIETRICH BONHOEFFER (2017) (0)
- Viral dynamics in hepatitis B virus infection ( lamivudine / antiviral treatment / liver / viral turnover / mathematical model (0)
- Epidemiological and evolutionary consequences of different types of CRISPR-Cas systems (2022) (0)
- Evolution of Recombination on an HIV-1 Derived Fitness Landscape (2010) (0)
- Oral Presentations O01-Spread of antimicrobial-resistant gonorrhoea (0)
- Discrete versus continuous-time models of malaria infections (2014) (0)
- Evolution Intra-host versus inter-host selection : Viral strategies of immune function impairment ( viral evolution / mathemadcal models ) (0)
- Unstable oscillations and spatial structure : the Nicholson-Bailey model (2007) (0)
- Ambiguity in population-based sequencing of HIV-1 as a marker for the age of HIV infection (2010) (0)
- July 3–December (2007) (0)
- Viraldynamics invivo: Limitations onestimates ofintracellular delayandvirus decay (1996) (0)
- Longitudinal Analysis of Cytotoxic T Lymphocyte Responses and Viral Antigenic Diversification during Primary Hiv-1 Infection (1998) (0)
- MBE methodology became available allowing for sequences being sampled sequentially through time ( Rambaut 2000 ) , allowing for changing population sizes through time ( (2018) (0)
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