Seiya Imoto
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Researcher ORCID ID = 0000-0002-2989-308X
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Seiya Imotocomputer-science Degrees
Computer Science
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Computational Linguistics
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Machine Learning
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Artificial Intelligence
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Computer Science
Seiya Imoto's Degrees
- PhD Computer Science University of Tokyo
- Masters Computer Science University of Tokyo
- Bachelors Computer Science University of Tokyo
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(Suggest an Edit or Addition)Seiya Imoto's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Open source clustering software. (2004) (2859)
- Long noncoding RNA HOTAIR regulates polycomb-dependent chromatin modification and is associated with poor prognosis in colorectal cancers. (2011) (1193)
- Mapping the human genetic architecture of COVID-19 (2021) (455)
- Patterns of somatic structural variation in human cancer genomes (2020) (377)
- Estimation of Genetic Networks and Functional Structures Between Genes by Using Bayesian Networks and Nonparametric Regression (2001) (337)
- Inferring gene networks from time series microarray data using dynamic Bayesian networks (2003) (323)
- Genomic Landscape of Esophageal Squamous Cell Carcinoma in a Japanese Population. (2016) (244)
- Inferring Gene Regulatory Networks from Time-Ordered Gene Expression Data of Bacillus Subtilis Using Differential Equations (2002) (229)
- Plastin3 is a novel marker for circulating tumor cells undergoing the epithelial-mesenchymal transition and is associated with colorectal cancer prognosis. (2013) (213)
- Estimating gene networks from gene expression data by combining Bayesian network model with promoter element detection (2003) (202)
- Comprehensive molecular characterization of mitochondrial genomes in human cancers (2017) (197)
- A Top-r Feature Selection Algorithm for Microarray Gene Expression Data (2012) (189)
- Dynamic Bayesian Network and Nonparametric Regression for Nonlinear Modeling of Gene Networks from Time Series Gene Expression Data (2003) (186)
- Bayesian network and nonparametric heteroscedastic regression for nonlinear modeling of genetic network (2003) (167)
- Combining microarrays and biological knowledge for estimating gene networks via Bayesian networks (2003) (152)
- Finding Optimal Models for Small Gene Networks (2003) (146)
- Bayesian information criteria and smoothing parameter selection in radial basis function networks (2004) (139)
- Senolysis by glutaminolysis inhibition ameliorates various age-associated disorders (2021) (137)
- Blautia genus associated with visceral fat accumulation in adults 20–76 years of age (2019) (130)
- Epidermal Growth Factor Receptor Tyrosine Kinase Defines Critical Prognostic Genes of Stage I Lung Adenocarcinoma (2012) (126)
- Combining Microarrays and Biological Knowledge for Estimating Gene Networks via Bayesian Networks (2004) (114)
- Finding Optimal Bayesian Network Given a Super-Structure (2008) (113)
- Statistical inference of transcriptional module-based gene networks from time course gene expression profiles by using state space models (2008) (106)
- Using Protein-Protein Interactions for Refining Gene Networks Estimated from Microarray Data by Bayesian Networks (2003) (100)
- Dynamic Bayesian network and nonparametric regression for nonlinear modeling of gene networks from time series gene expression data. (2004) (98)
- Quantitative characterization of T-cell repertoire in allogeneic hematopoietic stem cell transplant recipients (2015) (96)
- Molecular features of triple negative breast cancer cells by genome-wide gene expression profiling analysis. (2013) (95)
- Null space based feature selection method for gene expression data (2012) (77)
- Antigen delivery targeted to tumor-associated macrophages overcomes tumor immune resistance (2019) (75)
- Statistical analysis of a small set of time-ordered gene expression data using linear splines (2002) (75)
- Gene network inference and visualization tools for biologists: application to new human transcriptome datasets (2011) (75)
- Inferring Gene Regulatory Networks from Time-Ordered Gene Expression Data Using Differential Equations (2002) (73)
- Principal component analysis using QR decomposition (2013) (71)
- Expression and clinical significance of genes frequently mutated in small cell lung cancers defined by whole exome/RNA sequencing. (2015) (69)
- Recursive regularization for inferring gene networks from time-course gene expression profiles (2009) (68)
- Blautia genus associated with visceral fat accumulation in adults 20–76 years of age (2019) (65)
- A feature selection method using improved regularized linear discriminant analysis (2014) (64)
- Comprehensive phosphoproteome analysis unravels the core signaling network that initiates the earliest synapse pathology in preclinical Alzheimer's disease brain. (2015) (63)
- Predicting the Operon Structure of Bacillus subtilis Using Operon Length, Intergene Distance, and Gene Expression Information (2003) (62)
- Generation of a p16 Reporter Mouse and Its Use to Characterize and Target p16high Cells In Vivo. (2020) (60)
- Use of gene networks from full genome microarray libraries to identify functionally relevant drug-affected genes and gene regulation cascades. (2003) (60)
- Quantitative T cell repertoire analysis by deep cDNA sequencing of T cell receptor α and β chains using next-generation sequencing (NGS) (2014) (60)
- Targeting BIG3–PHB2 interaction to overcome tamoxifen resistance in breast cancer cells (2013) (60)
- Parallel Algorithm for Learning Optimal Bayesian Network Structure (2011) (55)
- Extension and verification of the SEIR model on the 2009 influenza A (H1N1) pandemic in Japan. (2013) (55)
- Finding module-based gene networks with state-space models - Mining high-dimensional and short time-course gene expression data (2007) (53)
- Estimating Genome-Wide Gene Networks Using Nonparametric Bayesian Network Models on Massively Parallel Computers (2011) (51)
- Estimating gene regulatory networks and protein-protein interactions of Saccharomyces cerevisiae from multiple genome-wide data (2005) (49)
- Nonlinear regression modeling via regularized radial basis function networks (2008) (49)
- A strategy to select suitable physicochemical attributes of amino acids for protein fold recognition (2013) (48)
- Weighted lasso in graphical Gaussian modeling for large gene network estimation based on microarray data. (2007) (47)
- Prognostic impact of circulating tumor DNA status post-allogeneic hematopoietic stem cell transplantation in AML and MDS. (2019) (47)
- Selection of smoothing parameters inB-spline nonparametric regression models using information criteria (2003) (47)
- Utilizing Evolutionary Information and Gene Expression Data for Estimating Gene Networks with Bayesian Network Models (2005) (46)
- Oncogenic roles of TOPK and MELK, and effective growth suppression by small molecular inhibitors in kidney cancer cells (2016) (46)
- A microarray analysis of gnotobiotic mice indicating that microbial exposure during the neonatal period plays an essential role in immune system development (2012) (46)
- ArrayCluster: an analytic tool for clustering, data visualization and module finder on gene expression profiles (2006) (45)
- Estimating time-dependent gene networks from time series microarray data by dynamic linear models with Markov switching (2005) (44)
- Elevated β-catenin pathway as a novel target for patients with resistance to EGF receptor targeting drugs (2015) (43)
- A mixed factors model for dimension reduction and extraction of a group structure in gene expression data (2004) (43)
- A novel ASXL1–OGT axis plays roles in H3K4 methylation and tumor suppression in myeloid malignancies (2018) (43)
- Optimal Search on Clustered Structural Constraint for Learning Bayesian Network Structure (2010) (43)
- Understanding endothelial cell apoptosis: what can the transcriptome, glycome and proteome reveal? (2007) (42)
- Combined landscape of single-nucleotide variants and copy number alterations in clonal hematopoiesis (2021) (42)
- The Transcriptional Landscape of p53 Signalling Pathway (2017) (41)
- Sex differences in oncogenic mutational processes (2019) (41)
- A Novel Network Profiling Analysis Reveals System Changes in Epithelial-Mesenchymal Transition (2011) (41)
- The C Clustering Library (2005) (41)
- Comprehensive analysis of indels in whole-genome microsatellite regions and microsatellite instability across 21 cancer types (2018) (41)
- Lung adenocarcinoma subtypes definable by lung development-related miRNA expression profiles in association with clinicopathologic features. (2014) (40)
- Integrative bioinformatics analysis of transcriptional regulatory programs in breast cancer cells (2008) (40)
- Prescription of Kampo Drugs in the Japanese Health Care Insurance Program (2013) (40)
- The rs6983267 SNP Is Associated with MYC Transcription Efficiency, Which Promotes Progression and Worsens Prognosis of Colorectal Cancer (2013) (39)
- Characterization of T-cell Receptor Repertoire in Inflamed Tissues of Patients with Crohn's Disease Through Deep Sequencing (2016) (38)
- Metagenome Data on Intestinal Phage-Bacteria Associations Aids the Development of Phage Therapy against Pathobionts. (2020) (37)
- Classification of primary liver cancer with immunosuppression mechanisms and correlation with genomic alterations (2020) (36)
- Genomic data assimilation for estimating hybrid functional Petri net from time-course gene expression data. (2006) (36)
- Cell Cycle Gene Networks Are Associated with Melanoma Prognosis (2012) (34)
- Ligand-based gene expression profiling reveals novel roles of glucocorticoid receptor in cardiac metabolism. (2009) (34)
- Characterization of the T cell repertoire by deep T cell receptor sequencing in tissues and blood from patients with advanced colorectal cancer (2016) (34)
- Integrated exome and RNA sequencing of dedifferentiated liposarcoma (2019) (33)
- Germline determinants of the somatic mutation landscape in 2,642 cancer genomes (2017) (33)
- Effects of long-term intake of a yogurt fermented with Lactobacillus delbrueckii subsp. bulgaricus 2038 and Streptococcus thermophilus 1131 on mice (2018) (33)
- A state space representation of VAR models with sparse learning for dynamic gene networks. (2010) (32)
- Statistical Analysis of Hie (Cold Sensation) and Hiesho (Cold Disorder) in Kampo Clinic (2013) (32)
- Gene set-based module discovery in the breast cancer transcriptome (2009) (32)
- Use of Gene Networks for Identifying and Validating Drug Targets (2003) (32)
- Error tolerant model for incorporating biological knowledge with expression data in estimating gene networks (2006) (31)
- N-cadherin expression is a potential survival mechanism of gefitinib-resistant lung cancer cells. (2011) (31)
- Analysis of PPARα-dependent and PPARα-independent transcript regulation following fenofibrate treatment of human endothelial cells (2009) (31)
- The hypusine cascade promotes cancer progression and metastasis through the regulation of RhoA in squamous cell carcinoma (2016) (31)
- Detection of APC mosaicism by next-generation sequencing in an FAP patient (2015) (30)
- Predicting gene regulation by sigma factors in Bacillus subtilis from genome-wide data (2004) (29)
- In utero gene therapy rescues microcephaly caused by Pqbp1-hypofunction in neural stem progenitor cells (2014) (29)
- Computational Strategy for Discovering Druggable Gene Networks from Genome-Wide RNA Expression Profiles (2005) (29)
- Forecasting Japan's Physician Shortage in 2035 as the First Full-Fledged Aged Society (2012) (28)
- Functional Restoration of Bacteriomes and Viromes by Fecal Microbiota Transplantation. (2021) (28)
- Evaluation of Sequence Features from Intrinsically Disordered Regions for the Estimation of Protein Function (2014) (27)
- Bootstrap Analysis of Gene Networks Based on Bayesian Networks and Nonparametric Regression (2002) (27)
- A filter based feature selection algorithm using null space of covariance matrix for DNA microarray gene expression data (2012) (27)
- Blocking PD-L1–PD-1 improves senescence surveillance and ageing phenotypes (2022) (27)
- Computational gene network analysis reveals TNF-induced angiogenesis (2012) (27)
- Genomon ITDetector: a tool for somatic internal tandem duplication detection from cancer genome sequencing data (2015) (27)
- Large-Scale Uniform Analysis of Cancer Whole Genomes in Multiple Computing Environments (2017) (26)
- A between-Class Overlapping Filter-Based Method for transcriptome Data Analysis (2012) (25)
- Protein Fold Recognition Using Genetic Algorithm Optimized Voting Scheme and Profile Bigram (2016) (24)
- DIGDAG, a First Algorithm to Mine Closed Frequent Embedded Sub-DAGs (2007) (24)
- Vasohibin-1 is identified as a master-regulator of endothelial cell apoptosis using gene network analysis (2013) (24)
- Strategy of finding optimal number of features on gene expression data (2011) (24)
- Sparse Overlapping Group Lasso for Integrative Multi-Omics Analysis (2015) (23)
- Metagenomic analysis of bacterial species in tongue microbiome of current and never smokers (2020) (23)
- Orengedokuto and berberine improve indomethacin-induced small intestinal injury via adenosine (2009) (22)
- Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples (2020) (22)
- Genomic Heterogeneity Within Individual Prostate Cancer Foci Impacts Predictive Biomarkers of Targeted Therapy. (2018) (22)
- Probabilistic expression of spatially varied amino acid dimers into general form of Chou׳s pseudo amino acid composition for protein fold recognition. (2015) (22)
- HapMuC: somatic mutation calling using heterozygous germ line variants near candidate mutations (2014) (21)
- Massively parallel sequencing of tenosynovial giant cell tumors reveals novel CSF1 fusion transcripts and novel somatic CBL mutations (2019) (21)
- Proton pump inhibitors enhance intestinal permeability via dysbiosis of gut microbiota under stressed conditions in mice (2020) (21)
- Systems biology analysis of Drosophila in vivo screen data elucidates core networks for DNA damage repair in SCA1. (2014) (21)
- Cost-effective length and timing of school closure during an influenza pandemic depend on the severity (2014) (20)
- Genome-wide screening of DNA methylation associated with lymph node metastasis in esophageal squamous cell carcinoma (2017) (20)
- Inference of Gene Regulatory Networks Incorporating Multi-Source Biological Knowledge via a State Space Model with L1 Regularization (2014) (20)
- DOCK2 is involved in the host genetics and biology of severe COVID-19 (2022) (20)
- COVID-19 risk assessment at the opening ceremony of the Tokyo 2020 Olympic Games (2021) (20)
- Characterization of the B-cell receptor repertoires in peanut allergic subjects undergoing oral immunotherapy (2018) (19)
- Overexpression of Cohesion Establishment Factor DSCC1 through E2F in Colorectal Cancer (2014) (19)
- Metagenomic profiling of gut microbiome in early chronic kidney disease. (2020) (19)
- A Novel Adaptive Penalized Logistic Regression for Uncovering Biomarker Associated with Anti-Cancer Drug Sensitivity (2017) (18)
- Targeting Tyro3 ameliorates a model of PGRN-mutant FTLD-TDP via tau-mediated synaptic pathology (2018) (18)
- Reduced expression of APC-1B but not APC-1A by the deletion of promoter 1B is responsible for familial adenomatous polyposis (2016) (18)
- Bayesian learning of biological pathways on genomic data assimilation (2008) (18)
- A Structure Learning Algorithm for Inference of Gene Networks from Microarray Gene Expression Data Using Bayesian Networks (2007) (18)
- Unique Gut Microbiome in HIV Patients on Antiretroviral Therapy (ART) Suggests Association with Chronic Inflammation (2021) (17)
- Estimating exogenous variables in data with more variables than observations (2011) (17)
- Robust Prediction of Anti-Cancer Drug Sensitivity and Sensitivity-Specific Biomarker (2014) (17)
- Inferring dynamic gene networks under varying conditions for transcriptomic network comparison (2010) (16)
- The Difference between the Two Representative Kampo Formulas for Treating Dysmenorrhea: An Observational Study (2016) (16)
- Unraveling Dynamic Activities of Autocrine Pathways that Control Drug-Response Transcriptome Networks (2008) (16)
- Circulating tumor DNA dynamically predicts response and/or relapse in patients with hematological malignancies (2018) (16)
- Sign: large-scale gene network estimation environment for high performance computing. (2011) (16)
- Analysis of gene networks for drug target discovery and validation. (2007) (16)
- ALPHLARD: a Bayesian method for analyzing HLA genes from whole genome sequence data (2018) (16)
- Dynamic Bayesian Network and Nonparametric Regression Model for Inferring Gene Networks (2002) (15)
- ADAPTIVE LEARNING MACHINES FOR NONLINEAR CLASSIFICATION AND BAYESIAN INFORMATION CRITERIA (2004) (15)
- Gene set differential analysis of time course expression profiles via sparse estimation in functional logistic model with application to time-dependent biomarker detection. (2016) (15)
- Identifying drug active pathways from gene networks estimated by gene expression data. (2005) (15)
- Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota (2020) (15)
- Exome-wide association study to identify rare variants influencing COVID-19 outcomes: Results from the Host Genetics Initiative (2022) (15)
- Oral MucoRice-CTB vaccine for safety and microbiota-dependent immunogenicity in humans: a phase 1 randomised trial. (2021) (14)
- Clinical Data Mining Related to the Japanese Kampo Concept “Hie” (Oversensitivity to Coldness) in Men and Pre- and Postmenopausal Women (2014) (13)
- 91 FADS AND FALLACIES IN THE NAME OF SMALL-SAMPLE MICROARRAY CLASSIFICATION (2007) (13)
- Recursive Random Lasso (RRLasso) for Identifying Anti-Cancer Drug Targets (2015) (13)
- Association between Nutrients and Visceral Fat in Healthy Japanese Adults: A 2-Year Longitudinal Study Brief Title: Micronutrients Associated with Visceral Fat Accumulation (2019) (13)
- Identifying Gene Pathways Associated with Cancer Characteristics via Sparse Statistical Methods (2012) (13)
- Statistical model-based testing to evaluate the recurrence of genomic aberrations (2012) (13)
- Bayesian network and nonparametric heteroscedastic regression for nonlinear modeling of genetic network. (2002) (13)
- Statistical Absolute Evaluation of Gene Ontology Terms with Gene Expression Data (2007) (13)
- Sequence-specific bias correction for RNA-seq data using recurrent neural networks (2017) (13)
- AFAP1L1, a novel associating partner with vinculin, modulates cellular morphology and motility, and promotes the progression of colorectal cancers (2014) (13)
- Increased Risk for CRC in Diabetic Patients with the Nonrisk Allele of SNPs at 8q24 (2012) (13)
- Estimation of nonlinear gene regulatory networks via L1 regularized NVAR from time series gene expression data. (2008) (12)
- Enhancement of Collective Immunity in Tokyo Metropolitan Area by Selective Vaccination against an Emerging Influenza Pandemic (2013) (12)
- Analysis of Questionnaire for Traditional Medicine and Development of Decision Support System (2014) (12)
- Japan COVID-19 Task Force: a nation-wide consortium to elucidate host genetics of COVID-19 pandemic in Japan (2021) (12)
- Halcyon: an accurate basecaller exploiting an encoder–decoder model with monotonic attention (2020) (12)
- FUNCTIONAL DISCRIMINANT ANALYSIS FOR MICROARRAY GENE EXPRESSION DATA VIA RADIAL BASIS FUNCTION NETWORKS (2004) (12)
- Allelic Imbalance at an 8q24 Oncogenic SNP is Involved in Activating MYC in Human Colorectal Cancer (2014) (12)
- Capturing the differences between humoral immunity in the normal and tumor environments from repertoire-seq of B-cell receptors using supervised machine learning (2017) (12)
- A statistical framework for genome-wide discovery of biomarker splice variations with GeneChip Human Exon 1.0 ST Arrays. (2006) (12)
- HEAL: an automated deep learning framework for cancer histopathology image analysis (2021) (11)
- Dysbiotic Fecal Microbiome in HIV-1 Infected Individuals in Ghana (2021) (11)
- Capturing the differences between humoral immunity in the normal and tumor environments from repertoire-seq of B-cell receptors using supervised machine learning (2019) (11)
- The miR-199a/Brm/EGR1 axis is a determinant of anchorage-independent growth in epithelial tumor cell lines (2015) (11)
- The relationship between cigarette smoking and the tongue microbiome in an East Asian population (2020) (11)
- A restricted level of PQBP1 is needed for the best longevity of Drosophila (2013) (10)
- Identification of AFAP1L1 as a prognostic marker for spindle cell sarcomas (2011) (10)
- Multi-omics Approach for Estimating Metabolic Networks Using Low-Order Partial Correlations (2013) (10)
- The hnRNP-Htt axis regulates necrotic cell death induced by transcriptional repression through impaired RNA splicing (2016) (10)
- Estimating Gene Networks from Expression Data and Binding Location Data via Boolean Networks (2005) (10)
- Clinical Characteristics of Patients with Coronavirus Disease (COVID-19): Preliminary Baseline Report of Japan COVID-19 Task Force, a Nationwide Consortium to Investigate Host Genetics of COVID-19 (2021) (10)
- Residual Bootstrapping and Median Filtering for Robust Estimation of Gene Networks from Microarray Data (2004) (9)
- Discrimination of prediction models between cold-heat and deficiency-excess patterns. (2020) (9)
- Cell-lineage level-targeted sequencing to identify acute myeloid leukemia with myelodysplasia-related changes. (2018) (9)
- Functional discriminant analysis for gene expression data via radial basis expansion (2004) (9)
- Predicting differences in gene regulatory systems by state space models. (2008) (9)
- WEIGHTED LASSO IN GRAPHICAL GAUSSIAN MODELING FOR LARGE GENE NETWORK ESTIMATION BASED ON MICROARRAY DATA (2007) (9)
- SiGN-SSM: open source parallel software for estimating gene networks with state space models (2011) (9)
- Quantifying immune-based counterselection of somatic mutations (2017) (9)
- Phenotype-based gene analysis allowed successful diagnosis of X-linked neutropenia associated with a novel WASp mutation (2018) (8)
- Butler enables rapid cloud-based analysis of thousands of human genomes (2020) (8)
- A novel strategy to search conserved transcription factor binding sites among coexpressing genes in human. (2008) (8)
- Two Blautia Species Associated with Visceral Fat Accumulation: A One-Year Longitudinal Study (2022) (8)
- Development of an MSI-positive colon tumor with aberrant DNA methylation in a PPAP patient (2019) (8)
- Nanopore basecalling from a perspective of instance segmentation (2020) (8)
- A novel meta-analysis approach of cancer transcriptomes reveals prevailing transcriptional networks in cancer cells. (2010) (8)
- Prediction of deficiency-excess pattern in Japanese Kampo medicine: Multi-centre data collection. (2019) (8)
- Role of Circulating Tumor DNA in Hematological Malignancy (2021) (7)
- A Bayesian model integration for mutation calling through data partitioning (2019) (7)
- Comprehensive Pharmacogenomic Pathway Screening by Data Assimilation (2011) (7)
- Identifying regulational alterations in gene regulatory networks by state space representation of vector autoregressive models and variational annealing (2012) (7)
- Association of single nucleotide polymorphisms in the NRF2 promoter with vascular stiffness with aging (2020) (7)
- Attenuated familial adenomatous polyposis with desmoids caused by an APC mutation (2015) (7)
- Functional Data Analysis of the Dynamics of Gene Regulatory Networks (2004) (7)
- Identification of an immunogenic neo-epitope encoded by mouse sarcoma using CXCR3 ligand mRNAs as sensors (2017) (7)
- Case-control study of binary disease trait considering interactions between SNPs and environmental effects using logistic regression (2004) (6)
- Parallel agent-based simulator for influenza pandemic (2011) (6)
- Requirement of glycosylation machinery in TLR responses revealed by CRISPR/Cas9 screening (2017) (6)
- A feature selection method using fixed-point algorithm for DNA microarray gene expression data (2014) (6)
- Predicting Japanese Kampo formulas by analyzing database of medical records: a preliminary observational study (2016) (6)
- Kernel mixture survival models for identifying cancer subtypes, predicting patient's cancer types and survival probabilities. (2004) (6)
- Multiscale Bootstrap Analysis of Gene Networks Based on Bayesian Networks and Nonparametric Regression (2003) (6)
- Assessment of COVID-19 risk and prevention effectiveness among spectators of mass gathering events (2021) (6)
- Immuno-genomic PanCancer Landscape Reveals Diverse Immune Escape Mechanisms and Immuno-Editing Histories (2018) (6)
- The first case of elderly TCF3-HLF-positive B-cell acute lymphoblastic leukemia (2019) (5)
- Fecal microbiome composition in healthy adults in Ghana. (2020) (5)
- Genetic algorithm for an optimized weighted voting scheme incorporating k-separated bigram transition probabilities to improve protein fold recognition (2014) (5)
- International society for gastrointestinal hereditary tumours—InSiGHT (2015) (5)
- Comprehensive molecular analysis of genomic profiles and PD-L1 expression in lung adenocarcinoma with a high-grade fetal adenocarcinoma component (2021) (5)
- Identification of activated transcription factors from microarray gene expression data of Kampo medicine-treated mice. (2007) (5)
- Identification of bacteriophage genome sequences with representation learning (2022) (5)
- Clustering for Visual Analogue Scale Data in Symbolic Data Analysis (2011) (5)
- ExonMiner: Web service for analysis of GeneChip Exon array data (2008) (5)
- Estimating Nonlinear Regression Models based on Radial Basis Function Networks (2001) (5)
- Nanopore basecalling from a perspective of instance segmentation (2019) (5)
- ALPHLARD-NT: Bayesian Method for Human Leukocyte Antigen Genotyping and Mutation Calling through Simultaneous Analysis of Normal and Tumor Whole-Genome Sequence Data (2019) (5)
- Circulating cell-free DNA in the peripheral blood plasma of patients is an informative biomarker for multiple myeloma relapse (2021) (5)
- Immunogenomic pan-cancer landscape reveals immune escape mechanisms and immunoediting histories (2021) (5)
- Discovery of Exogenous Variables in Data with More Variables Than Observations (2009) (5)
- A Visualization Tool for Gene Network Discovery-G.NET (2002) (5)
- Neoantimon: a multifunctional R package for identification of tumor-specific neoantigens (2020) (4)
- The detectability and removal efficiency of SARS-CoV-2 in a large-scale septic tank of a COVID-19 quarantine facility in Japan (2022) (4)
- Partial Order-Based Bayesian Network Learning Algorithm for Estimating Gene Networks (2008) (4)
- Effects of mild obesity on outcomes in Japanese patients with COVID-19: a nationwide consortium to investigate COVID-19 host genetics (2022) (4)
- Prediction of blood test values under different lifestyle scenarios using time-series electronic health record (2020) (4)
- On the application of BERT models for nanopore methylation detection (2021) (4)
- Identification of a p53 target, CD137L, that mediates growth suppression and immune response of osteosarcoma cells (2017) (4)
- Adaptive NetworkProfiler for Identifying Cancer Characteristic-Specific Gene Regulatory Networks (2018) (4)
- An Unusually Short Latent Period of Therapy-Related Myeloid Neoplasm Harboring a Rare MLL-EP300 Rearrangement: Case Report and Literature Review (2019) (4)
- An efficient method of exploring simulation models by assimilating literature and biological observational data (2014) (4)
- Identifiability of local transmissibility parameters in agent-based pandemic simulation (2012) (4)
- COVID-19 testing systems and their effectiveness in small, semi-isolated groups for sports events (2021) (4)
- Variant analysis of prostate cancer in Japanese patients and a new attempt to predict related biological pathways. (2020) (4)
- Clinical Studies Plastin 3 Is a Novel Marker for Circulating Tumor Cells Undergoing the Epithelial – Mesenchymal Transition and Is Associated with Colorectal Cancer Prognosis (2013) (3)
- Does Twitter Trigger Bursts in Signature Collections? (2013) (3)
- Trop-2 in Upper Tract Urothelial Carcinoma (2022) (3)
- Identifying Hidden Confounders in Gene Networks by Bayesian Networks (2010) (3)
- U-shaped association between abnormal serum uric acid levels and COVID-19 severity: reports from the Japan COVID-19 Task Force (2022) (3)
- Application of targeted nanopore sequencing for the screening and determination of structural variants in patients with Lynch syndrome (2021) (3)
- COVID-19 wastewater surveillance implemented in the Tokyo 2020 Olympic and Paralympic Village (2022) (3)
- Interaction-Based Feature Selection for Uncovering Cancer Driver Genes Through Copy Number-Driven Expression Level (2017) (3)
- An Efficient Data Assimilation Schema for Restoration and Extension of Gene Regulatory Networks Using Time-Course Observation Data (2014) (3)
- Identification of a p53-repressed gene module in breast cancer cells. (2017) (3)
- The whole blood transcriptional regulation landscape in 465 COVID-19 infected samples from Japan COVID-19 Task Force (2022) (3)
- Clustering samples characterized by time course gene expression profiles using the mixture of state space models. (2007) (3)
- Association between breath methane concentration and visceral fat area: a population-based cross-sectional study (2019) (3)
- Comparison of gene expression profiles produced by CAGE, illumina microarray and real time RT-PCR. (2010) (3)
- Estimation of macroscopic parameter in agent-based pandemic simulation (2011) (3)
- Cancer evolution simulation identifies possible principles underlying intratumor heterogeneity (2015) (3)
- Association of SARS-CoV-2 Load in Wastewater With Reported COVID-19 Cases in the Tokyo 2020 Olympic and Paralympic Village From July to September 2021 (2022) (3)
- Possible Role of Cytochrome P450 1B1 in the Mechanism of Gemcitabine Resistance in Pancreatic Cancer (2021) (3)
- Characteristics of hospitalized patients with COVID-19 during the first to fifth waves of infection: a report from the Japan COVID-19 Task Force (2022) (3)
- Bronchoalveolar lavage fluid reveals factors contributing to the efficacy of PD-1 blockade in lung cancer (2022) (3)
- Multilayer Cluster Heat Map Visualizing Biological Tensor Data (2013) (2)
- Estimation of B-spline Nonlinear Regression Models Using Information Criteria (1999) (2)
- Genomic Data Assimilation for a Hybrid Functional Petri Net Model of Circadian Rhythm with Time Course Gene Expression Data (2006) (2)
- Effects of test timing and isolation length to reduce the risk of COVID-19 infection associated with airplane travel, as determined by infectious disease dynamics modeling (2021) (2)
- Genomic data assimilation using a higher moment filtering technique for restoration of gene regulatory networks (2015) (2)
- Clinical significance of prediabetes, undiagnosed diabetes and diagnosed diabetes on critical outcomes in COVID‐19: Integrative analysis from the Japan COVID‐19 task force (2022) (2)
- Computational Genome-Wide Discovery of Aberrant Splice Variations with Exon Expression Profiles (2007) (2)
- Improvement of the Japanese healthcare data system for the effective management of patients with COVID-19: A national survey (2022) (2)
- Impact of upper and lower respiratory symptoms on COVID-19 outcomes: a multicenter retrospective cohort study (2022) (2)
- Impact of salivary and pancreatic amylase gene copy numbers on diabetes, obesity, and functional profiles of microbiome in Northern Japanese population (2021) (2)
- Bayesian Network Approach to Estimate Gene Networks (2007) (2)
- Network-Based Predictions and Simulations by Biological State Space Models: Search for Drug Mode of Action (2010) (2)
- Perioperative circulating tumor DNA enables the identification of patients with poor prognosis in upper tract urothelial carcinoma (2022) (2)
- Reconstruction of high read-depth signals from low-depth whole genome sequencing data using deep learning (2017) (2)
- Model-free unsupervised gene set screening based on information enrichment in expression profiles (2010) (2)
- Cross-Border Transmissions of the Delta Substrain AY.29 During Tokyo Olympic and Paralympic Games (2022) (2)
- Impact of accumulative smoking exposure and chronic obstructive pulmonary disease on COVID-19 outcomes: report based on findings from the Japan COVID-19 task force (2022) (2)
- Identification of a p53-repressed gene module in breast cancer cells (2017) (2)
- Ovariectomy-Induced Dysbiosis May Have a Minor Effect on Bone in Mice (2021) (2)
- Data science and precision health care. (2020) (2)
- Gene Set-Based Module Discovery Decodes cis-Regulatory Codes Governing Diverse Gene Expression across Human Multiple Tissues (2010) (2)
- Prognostic Impact of Circulating Tumor DNA Status Post-Allogeneic Hematopoietic Stem Cell Transplantation in Acute Myeloid Leukemia and Myelodysplastic Syndrome (2018) (2)
- Early dynamics of circulating tumor DNA predict clinical response to immune checkpoint inhibitors in metastatic renal cell carcinoma (2022) (2)
- A multifunctional R package for identification of tumor-specific neoantigens (2019) (2)
- Accurate and Flexible Bayesian Mutation Call from Multi-regional Tumor Samples (2019) (2)
- Development of a COVID-19 risk assessment model for participants at outdoor music festivals: evaluation of the validity and control measure effectiveness based on two actual events in Japan and Spain (2022) (2)
- Estimation of B-spline Nonparametric Regression Models using Information Criteria (1999) (1)
- A TCR Sequence Data Analysis Pipeline: Tcrip (2015) (1)
- Memory-Efficient Clustering Algorithms for Microarray Gene Expression Data (2005) (1)
- Analysis of questionnaire for traditional medical and develop decision support system (2012) (1)
- Collocation-based sparse estimation for constructing dynamic gene networks. (2010) (1)
- Analyzing integrated network of methylation and gene expression profiles in lung squamous cell carcinoma (2022) (1)
- Role of the Orphan Transporter SLC35E1 in the Nuclear Egress of Herpes Simplex Virus 1 (2022) (1)
- PREDICTING DIFFERENCES IN GENE REGULATORY SYSTEMS BY STATE SPACE MODELS (2008) (1)
- Analyzing Time Course Gene Expression Data with Biological and Technical Replicates to Estimate Gene Networks by State Space Models (2008) (1)
- Symbolic hierarchical clustering for visual analogue scale data (2011) (1)
- Uncovering Molecular Mechanisms of Drug Resistance via Network-Constrained Common Structure Identification (2022) (1)
- Vasohibin-1 is identified as a master-regulator of endothelial cell apoptosis using gene network analysis (2013) (1)
- Sensitivity of rapid antigen tests for COVID-19 during the Omicron variant outbreak among players and staff members of the Japan Professional Football League and clubs: a retrospective observational study (2022) (1)
- Gene regulatory network clustering for graph layout based on microarray gene expression data. (2010) (1)
- [Autologous peripheral blood stem cell transplantation for double-refractory myeloma with K-RAS and N-RAS mutations]. (2017) (1)
- PredictiveNetwork: predictive gene network estimation with application to gastric cancer drug response-predictive network analysis (2022) (1)
- Estimation of abrupt changes in sentinel observation data of influenza epidemics in Japan (2013) (1)
- OVarCall: Bayesian Mutation Calling Method Utilizing Overlapping Paired-End Reads. (2017) (1)
- Combining Gene Expression Data with DNA Sequence Information for Estimating Gene Networks Using Bayesian Network Model (2003) (1)
- Repeated Lineage Switches in an Elderly Case of Refractory B-Cell Acute Lymphoblastic Leukemia With MLL Gene Amplification: A Case Report and Literature Review (2022) (1)
- Genome-wide causal mediation analysis identifies genetic loci associated with uterine fibroids mediated by age at menarche. (2022) (1)
- Author Correction: Pan-cancer analysis of whole genomes (2023) (1)
- Robust Sample-Specific Stability Selection with Effective Error Control (2019) (1)
- Classification of patients with cold sensation by a review of systems database: A single-centre observational study. (2019) (1)
- Parameter estimation in multi-compartment SIR model (2014) (1)
- Successful Clinical Sequencing by Molecular Tumor Board in an Elderly Patient With Refractory Sézary Syndrome. (2020) (1)
- Global gene network exploration based on explainable artificial intelligence approach (2020) (1)
- Xprediction: Explainable EGFR-TKIs response prediction based on drug sensitivity specific gene networks (2022) (1)
- A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models (2016) (1)
- Needle- and Cold Chain- Free Rice-Based Oral Vaccine, MucoRice-CTB Shows Microbiota-Dependent Immunogenicity in Humans (2019) (1)
- Expanding the BBMRI-ERIC Directory into a Global Catalogue of COVID-19-Ready Collections: A Joint Initiative of BBMRI-ERIC and ISBER (2020) (0)
- Binary contingency table method for analysing gene mutation in cancer genome (2016) (0)
- Azacitidine effectively reduces TP53-mutant leukemic cell burden in secondary acute myeloid leukemia after cord blood transplantation (2018) (0)
- Case report: Common clonal origin of concurrent langerhans cell histiocytosis and acute myeloid leukemia (2022) (0)
- Author Correction: Patterns of somatic structural variation in human cancer genomes (2020) (0)
- Enhancing breakpoint resolution with deep segmentation model: A general refinement method for read-depth based structural variant callers (2019) (0)
- Microbial Gene Ontology informed deep neural network for microbe functionality discovery in human diseases (2022) (0)
- A microarray analysis of gnotobiotic mice indicating that microbial exposure during the neonatal period plays an essential role in immune system development (2012) (0)
- Transform of visual analogue scale data and their clustering (2011) (0)
- Abstract LB-99: EGF receptor tyrosine kinase defines critical prognostic genes of stage IA lung adenocarcinoma (2012) (0)
- Application of state-space model with skew-t measurement noise to blood test value prediction (2021) (0)
- PredictiveNetwork: predictive gene network estimation with application to gastric cancer drug response-predictive network analysis (2022) (0)
- Binary Contingency Table Method for Analyzing Gene Mutation in Cancer Genome (2015) (0)
- A Penalized Likelihood Estimation on Transcriptional Module-Based Clustering (2005) (0)
- Gene Regulatory Network-Classifier: Gene Regulatory Network-Based Classifier and Its Applications to Gastric Cancer Drug (5-Fluorouracil) Marker Identification (2022) (0)
- Additional file 1 of Sequence-specific bias correction for RNA-seq data using recurrent neural networks (2017) (0)
- Humanity-based Design of Health and Medical Services (2017) (0)
- Abstract 4020: Exploring target gene(s) within chromosome 19-amplification detected in a subclone from metastatic tumors in mouse transplantable OSCC (2014) (0)
- Characterization of the B-cell receptor repertoires in peanut allergic subjects undergoing oral immunotherapy (2017) (0)
- Author Correction: Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples (2020) (0)
- Use of the neutrophil-to-lymphocyte ratio and an oxygen requirement to predict disease severity in patients with COVID-19 (2023) (0)
- Diagnostic significance of secondary bacteremia in patients with COVID-19 (2023) (0)
- Finding Gene Networks with (2007) (0)
- Author Correction: Inferring structural variant cancer cell fraction (2022) (0)
- Intra-bin structural variant segmentation for whole-genome sequencing data using U-net (2019) (0)
- Mining DAG Patterns from MicroArray Data to Discover Gene Interaction Networks (2010) (0)
- Sequence-specific bias correction for RNA-seq data using recurrent neural networks (2017) (0)
- Abstract 1368: Genome-wide screening of DNA methylation markers to predict the presence of lymph node metastasis in esophageal squamous cell carcinoma (2014) (0)
- Searching Optimal Bayesian Network Structure on Constraint Search Space: Super-Structure Approach (2010) (0)
- Metagenomic analysis of bacterial species in tongue microbiome of current and never smokers (2020) (0)
- Human Genome Center Laboratory of DNA Information Analysis Laboratory of Sequence Analysis Laboratory of Genome Database (2017) (0)
- 7. Applications of Artificial Intelligence (AI) to Clinical and Genomic Medicine (2021) (0)
- A feature selection method using improved regularized linear discriminant analysis (2013) (0)
- 3081 – SINGLE-CELL RNA-SEQ REVEALS ALTERATIONS IN HETEROGENEITY OF HEMATOPOIETIC STEM CELLS WITH AGING (2021) (0)
- Bromodomain protein BRD8 regulates cell cycle progression in colorectal cancer cells through a TIP60-independent regulation of the pre-RC complex (2023) (0)
- OVarCall: Bayesian Mutation Calling Method Utilizing Overlapping Paired-End Reads (2016) (0)
- Identifying Key Regulators of Keratinization in Lung Squamous Cell Cancer Using Integrated TCGA Analysis (2023) (0)
- Impact of respiratory bacterial infections on mortality in Japanese patients with COVID-19: a retrospective cohort study (2023) (0)
- Development of an MSI-positive colon tumor with aberrant DNA methylation in a PPAP patient (2019) (0)
- Identification of SARS-CoV-2 variants in wastewater using targeted amplicon sequencing during a low COVID-19 prevalence period in Japan (2023) (0)
- Identifying regulational alterations in gene regulatory networks by state space representation of vector autoregressive models and variational annealing (2012) (0)
- Connection between traditional medicine and disease (2012) (0)
- Annotations of Recurrent Structural Variant Events in Pan-cancer Whole Genome Data for Precision Medicine (2021) (0)
- Prevailing Cancer Transcriptional Networks Revealed by Meta-analysis of Cancer Transcriptomes (2009) (0)
- Principal component analysis using QR decomposition (2012) (0)
- [The efficacy of alemtuzumab for pure red cell aplasia associated with autoimmune polyendocrine syndrome type 1]. (2022) (0)
- Definition of a Dietary Pattern Expressing the Intake of Vegetables and Fruits and Its Association with Intestinal Microbiota (2023) (0)
- Abstract B19: Critical prognostic genes for stage I lung adenocarcinoma are identified from normal growth factor- signaling system by overcoming cancer heterogeneity (2010) (0)
- Symbolic Hierarchical Clustering for Pain Vector (2012) (0)
- A strategy to select suitable physicochemical attributes of amino acids for protein fold recognition (2013) (0)
- Recursive bootstrap L 1-type regularized regression modeling based on parametric statistical test (2015) (0)
- Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota (2020) (0)
- Abstract 736: Cell lineage-oriented clinical sequencing unveils distinct clonal ontogeny of acute myeloid leukemia with myelodysplasia-related changes (2017) (0)
- Abstract PR02: Antigen delivery targeting tumor-infiltrating macrophages leads to eradication of tumor highly resistant to immune checkpoint inhibitors (2017) (0)
- Characteristics and Clinical Effectiveness of COVID-19 Vaccination in Hospitalized Patients in Omicron-dominated Epidemic Wave – A Nationwide Study in Japan (2023) (0)
- Cost-effective length and timing of school closure during an influenza pandemic depend on the severity (2014) (0)
- Poster: Comprehensive pharmacogenomic pathway screening by data assimilation (2011) (0)
- Artificial Intelligence Guided Precision Medicine Approach to Hematological Disease (2018) (0)
- ALPHLARD: a Bayesian method for analyzing HLA genes from whole genome sequence data (2018) (0)
- Identification of Bacteriophages Using Deep Representation Model with Pre-training (2021) (0)
- Tumor-promoting function and regulatory landscape of PD-L2 in B-cell lymphoma (2022) (0)
- Network profiling analysis for generating modulator-dependent gene networks (2010) (0)
- Targeting tumor heterogeneity: multiplex-detection-based multiple instance learning for whole slide image classification (2023) (0)
- Chapter 11 – Gene Networks: Estimation, Modeling, and Simulation (2006) (0)
- Logistic Regression Model of Binary Disease Trait for Case-Control Study Considering Interactions between SNPs and Environments (2004) (0)
- Clinical clustering with prognostic implications in Japanese COVID-19 patients: report from Japan COVID-19 Task Force, a nation-wide consortium to investigate COVID-19 host genetics (2022) (0)
- Gene Networks Viewed through Two Models (2009) (0)
- A retrospective observational study analyzing work and study motivation based on the work environment of 15,677 Japanese clinicians in 2016 (2022) (0)
- PFresGO: an attention mechanism-based deep-learning approach for protein annotation by integrating gene ontology inter-relationships (2023) (0)
- Identification of a p53 target, CD137L, that mediates growth suppression and immune response of osteosarcoma cells (2017) (0)
- Prediction Model for Deficiency-Excess Patterns, Including Medium Pattern (2020) (0)
- EXPLORING TECHNIQUES FOR OPTIMAL FEATURE AND CLASSIFIER SELECTION FOR PROTEIN MODELING, FUNCTION, AND FOLD RECOGNITION (2015) (0)
- Author Correction: The evolutionary history of 2,658 cancers (2023) (0)
- Impact of neoadjuvant therapy on gut microbiome in patients with resectable/borderline resectable pancreatic ductal adenocarcinoma. (2023) (0)
- Identification of Drug Active Pathways Based on Gene Networks Estimated by Bayesian Networks and Gene Expression Data (2005) (0)
- Explainable AI for Estimating Pathogenicity of Genetic Variants Using Large-Scale Knowledge Graphs (2023) (0)
- Statistical Model Selection Method to Analyze Combinatorial Effects of Snps and Environmental Factors for Binary Disease (2006) (0)
- Reconstructing Large-Scale Gene Networks with Recursive Elastic Net (2010) (0)
- Discovering microbe functionality in human disease with a gene-ontology-aware model (2021) (0)
- Genomic Analysis of Therapy-Related Myeloid Neoplasms and Tracking of the Founder Clone By Circulating Tumor DNA (2019) (0)
- 2SD-04 Large scale gene network estimation with K computer(2SD Supercomputing in Molecular Network to Cellular Dynamics,Symposium,The 50th Annual Meeting of the Biophysical Society of Japan) (2012) (0)
- Computational Drug Target Pathway Discovery: A Bayesian Network Approach (2011) (0)
- Multiplex-detection Based Multiple Instance Learning Network for Whole Slide Image Classification (2022) (0)
- Ensemble smoothers for inference of hidden states and parameters in combinatorial regulatory model (2020) (0)
- A Parallel Algorithm for Estimating Genome-Wide Gene Networks using Nonparametric Bayesian Networks (2009) (0)
- Loss of Dok-3 in Non-tumor Cells Induces Malignant Transformation of Benign Epithelial Tumor Cells of the Intestine (2022) (0)
- COVID-19 infection risk assessment and management at the Tokyo 2020 Olympic and Paralympic Games: A scoping review (2023) (0)
- Correction: Global gene network exploration based on explainable artificial intelligence approach (2021) (0)
- Anti-inflammatory effects of ruxolitinib on chronic neutrophilic leukemia harboring CSF3R-T618I mutation with bilateral renal abscesses (2022) (0)
- Abstract 3880: Exploring the role of up-regulated genes in highly metastatic oral cancer subline using spontaneous metastatic mouse model. (2013) (0)
- Targeting Tyro3 ameliorates a model of PGRN-mutant FTLD-TDP via tau-mediated synaptic pathology (2018) (0)
- Abstract LB-132: Critical prognostic genes for stage I lung cancer are identified from normal growth factor-regulated gene network by overcoming cancer heterogeneity (2010) (0)
- Dysfunctional analysis of the pre-training model on nucleotide sequences and the evaluation of different k-mer embeddings (2022) (0)
- The effect of age on the association between daily gait speed and abdominal obesity in Japanese adults (2021) (0)
- Theoretical Foundation of the Performance of Phylogeny-Based Somatic Variant Detection (2020) (0)
- Detailed Analysis of the Impact of Clonal Hematopoiesis on the Risk of Severe COVID-19 Infection (2022) (0)
- A retrospective observational study analyzing work and study motivation based on the work environment of 15,677 Japanese clinicians in 2016 (2022) (0)
- Super-structure: a decisive framework to rationalize and improve both optimal and heuristic Bayesian network structure learning algorithms (バイオ情報学) (2008) (0)
- Histological markers, sickle-shaped blood vessels, myxoid area, and infiltrating growth pattern help stratify the prognosis of patients with myxofibrosarcoma/undifferentiated sarcoma (2023) (0)
- Abstract 1251: Significant growth suppressive effects of TOPK and MELK inhibitors in kidney cancer (2016) (0)
- Publisher Correction: Integrated exome and RNA sequencing of dedifferentiated liposarcoma (2020) (0)
- Exploratory Introduction of Cognitive Computing to Clinical Sequencing in Hematological Malignancies (2016) (0)
- Different clonal dynamics of chronic myeloid leukaemia between bone marrow and the central nervous system (2018) (0)
- Automatic sparse principal component analysis (2020) (0)
- Abstract 2278: The hypusine cascade promotes cancer progression and metastasis through the regulation of RhoA in squamous cell carcinoma (2015) (0)
- Discovering functional gene pathways associated with cancer heterogeneity via sparse supervised learning (2010) (0)
- Publisher Correction: Integrated exome and RNA sequencing of dedifferentiated liposarcoma (2020) (0)
- Abstract 4921: Next-generation sequencing as a potential tool in the diagnostics of APC mosaicism in FAP patient (2015) (0)
- Development of Clinical Decision Support System of Japanese Kampo Medicine (2015) (0)
- Gene Networks: Estimation, Modeling, and Simulation (2014) (0)
- Null space based feature selection method for gene expression data (2011) (0)
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What Schools Are Affiliated With Seiya Imoto?
Seiya Imoto is affiliated with the following schools:
