Simon Rogers
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Computational biologist
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Simon Rogerscomputer-science Degrees
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Simon Rogersbiology Degrees
Biology
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Bioinformatics
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Computational Biology
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Computer Science Biology
Simon Rogers's Degrees
- Bachelors Biology University of Oxford
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(Suggest an Edit or Addition)Simon Rogers's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Feature-Based Molecular Networking in the GNPS Analysis Environment (2019) (453)
- Estimating Dataset Size Requirements for Classifying DNA Microarray Data (2003) (272)
- Topic modeling for untargeted substructure exploration in metabolomics (2016) (219)
- Variational Bayesian Multinomial Probit Regression with Gaussian Process Priors (2006) (216)
- MolNetEnhancer: Enhanced Molecular Networks by Integrating Metabolome Mining and Annotation Tools (2019) (185)
- A First Course in Machine Learning (2011) (179)
- Peripheral blood stem cells as an alternative to marrow for allogeneic transplantation (1993) (173)
- Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models (2008) (155)
- A Bayesian regression approach to the inference of regulatory networks from gene expression data (2005) (124)
- ODE parameter inference using adaptive gradient matching with Gaussian processes (2013) (121)
- The latent process decomposition of cDNA microarray data sets (2005) (109)
- Probabilistic assignment of formulas to mass peaks in metabolomics experiments (2009) (95)
- Autonomous growth of blast cells is associated with reduced survival in acute myeloblastic leukemia. (1993) (87)
- Hierarchic Bayesian models for kernel learning (2005) (86)
- Uncertain text entry on mobile devices (2014) (79)
- Accurate garment surface analysis using an active stereo robot head with application to dual-arm flattening (2015) (79)
- A user-specific machine learning approach for improving touch accuracy on mobile devices (2012) (78)
- Visceral varicella zoster infection after bone marrow transplantation without skin involvement and the use of PCR for diagnosis. (1995) (78)
- Bayesian model-based inference of transcription factor activity (2007) (66)
- AnglePose: robust, precise capacitive touch tracking via 3d orientation estimation (2011) (64)
- MetAssign: probabilistic annotation of metabolites from LC–MS data using a Bayesian clustering approach (2014) (61)
- Prognostic classification of relapsing favorable histology Wilms tumor using cDNA microarray expression profiling and support vector machines (2004) (59)
- A community resource for paired genomic and metabolomic data mining (2021) (58)
- Ms2lda.org: web-based topic modelling for substructure discovery in mass spectrometry (2017) (58)
- Evidence for internal autocrine regulation of growth in acute myeloblastic leukemia cells. (1994) (56)
- An Optimal Frequency in Ca2+ Oscillations for Stomatal Closure Is an Emergent Property of Ion Transport in Guard Cells1[CC-BY] (2015) (47)
- Role of autocrine and paracrine production of granulocyte-macrophage colony-stimulating factor and interleukin-1 beta in the autonomous growth of acute myeloblastic leukaemia cells--studies using purified CD34-positive cells. (1992) (47)
- Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships. (2021) (45)
- Unsupervised Discovery and Comparison of Structural Families Across Multiple Samples in Untargeted Metabolomics (2017) (43)
- Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships (2020) (43)
- Modelling water use efficiency in a dynamic environment: An example using Arabidopsis thaliana☆ (2016) (43)
- PiMP my metabolome: an integrated, web-based tool for LC-MS metabolomics data (2017) (43)
- 28 frames later: predicting screen touches from back-of-device grip changes (2014) (42)
- A Heuristic-Based Approach for Flattening Wrinkled Clothes (2013) (37)
- Advances in decomposing complex metabolite mixtures using substructure- and network-based computational metabolomics approaches (2021) (34)
- Deciphering complex metabolite mixtures by unsupervised and supervised substructure discovery and semi-automated annotation from MS/MS spectra. (2019) (32)
- Unexpected Connections between Humidity and Ion Transport Discovered Using a Model to Bridge Guard Cell-to-Leaf Scales[CC-BY] (2017) (30)
- EZ-Root-VIS: A Software Pipeline for the Rapid Analysis and Visual Reconstruction of Root System Architecture1[CC-BY] (2018) (30)
- Recognising the clothing categories from free-configuration using Gaussian-Process-based interactive perception (2016) (29)
- Linking biosynthetic and chemical space to accelerate microbial secondary metabolite discovery (2019) (29)
- Interleukin‐1 is one factor which regulates autocrine production of GM‐CSF by the blast cells of acute myeloblastic leukaemia (1990) (26)
- User-specific touch models in a cross-device context (2013) (26)
- Identification of prognostic signatures in breast cancer microarray data using Bayesian techniques (2006) (25)
- FingerCloud: uncertainty and autonomy handover incapacitive sensing (2010) (25)
- Predicting host taxonomic information from viral genomes: A comparison of feature representations (2020) (23)
- An Optimal Frequency in Ca 2 + Oscillations for Stomatal Closure Is an Emergent Property of Ion Transport in Guard Cells 1 [ CC-BY ] (2016) (23)
- Single-shot clothing category recognition in free-configurations with application to autonomous clothes sorting (2017) (22)
- Ranking microbial metabolomic and genomic links in the NPLinker framework using complementary scoring functions (2020) (22)
- Semi-parametric analysis of multi-rater data (2010) (21)
- Rapid Development of Improved Data-Dependent Acquisition Strategies (2020) (21)
- matchms - processing and similarity evaluation of mass spectrometry data (2020) (21)
- Multi-class Semi-supervised Learning with the e-truncated Multinomial Probit Gaussian Process (2007) (21)
- Expression profiling targeting chromosomes for tumor classification and prediction of clinical behavior (2003) (20)
- Detecting Swipe Errors on Touchscreens using Grip Modulation (2016) (19)
- In Silico Optimization of Mass Spectrometry Fragmentation Strategies in Metabolomics (2019) (18)
- Universal MS/MS Visualization and Retrieval with the Metabolomics Spectrum Resolver Web Service (2020) (18)
- Global Sensitivity Analysis of OnGuard Models Identifies Key Hubs for Transport Interaction in Stomatal Dynamics1[CC-BY] (2017) (17)
- Up-down biphasic volume response of human red blood cells to PIEZO1 activation during capillary transits (2021) (17)
- A First Course in Machine Learning, Second Edition (2016) (17)
- Comparative Metabologenomics Analysis of Polar Actinomycetes (2021) (15)
- Per-Host DDoS Mitigation by Direct-Control Reinforcement Learning (2020) (15)
- Sparse selection of training data for touch correction systems (2013) (15)
- Infinite factorization of multiple non-parametric views (2010) (15)
- Gestational age-dependent development of the neonatal metabolome (2020) (15)
- PIEZO1 and the mechanism of the long circulatory longevity of human red blood cells (2021) (14)
- Integrated Probabilistic Annotation (IPA): A Bayesian-based annotation method for metabolomic profiles integrating biochemical connections, isotope patterns and adduct relationships. (2019) (13)
- Variational Bayesian Multinomial Probit Regression with (2006) (13)
- Modelling and correcting for the impact of the gait cycle on touch screen typing accuracy (2016) (12)
- Protein interaction detection in sentences via Gaussian Processes: a preliminary evaluation (2011) (12)
- Fast Parameter Inference in Nonlinear Dynamical Systems using Iterative Gradient Matching (2016) (10)
- Effect of erythropoietin in patients with myeloma. (1990) (10)
- Incorporating peak grouping information for alignment of multiple liquid chromatography-mass spectrometry datasets (2015) (10)
- Class Prediction with Microarray Datasets (2004) (10)
- Ranking Metabolite Sets by Their Activity Levels (2021) (10)
- Approximate parameter inference in systems biology using gradient matching: a comparative evaluation (2016) (9)
- A Precise Method for Cloth Configuration Parsing Applied to Single-Arm Flattening (2016) (9)
- Stronger findings for metabolomics through Bayesian modeling of multiple peaks and compound correlations (2014) (9)
- Discrete and continuous time simulations of spatial ecological processes predict different final population sizes and interspecific competition outcomes (2013) (9)
- Statistical methods and models for bridging Omics data levels. (2011) (8)
- Stronger findings from mass spectral data through multi-peak modeling (2014) (7)
- Towards development of a statistical framework to evaluate myotonic dystrophy type 1 mRNA biomarkers in the context of a clinical trial (2019) (6)
- Autonomous Clothes Manipulation Using a Hierarchical Vision Architecture (2018) (5)
- Investigating the Disagreement Between Clinicians’ Ratings of Patients in ICUs (2013) (5)
- II. Changes in the homeostasis of human red blood cells during capillary transits (2020) (5)
- Probabilistic framework for integration of mass spectrum and retention time information in small molecule identification (2020) (5)
- Statistical inference in mechanistic models: time warping for improved gradient matching (2017) (4)
- Decomposing metabolite set activity levels with PALS (2020) (4)
- Detecting Missing Content Queries in an SMS-Based HIV/AIDS FAQ Retrieval System (2014) (4)
- I. A novel multiplatform model of human red blood cell homeostasis applied to investigate the mechanisms behind the multiple effects of elevated [Ca2+]i (2020) (4)
- Deciphering complex metabolite mixtures by unsupervised and supervised substructure discovery and semi-automated annotation from MS/MS spectra (2018) (4)
- Machine learning techniques for microarray analysis. (2004) (4)
- ViMMS 2.0: A framework to develop, test and optimise fragmentation strategies in LC-MS metabolomics (2022) (4)
- Robot Vision Architecture for Autonomous Clothes Manipulation (2016) (4)
- Evaluating bad query abandonment in an iterative SMS-based FAQ retrieval system (2013) (4)
- Development and Validation of a Nonremission Risk Prediction Model in First-Episode Psychosis: An Analysis of 2 Longitudinal Studies (2021) (3)
- Assessing potential routes of Streptococcus agalactiae transmission between dairy herds using national surveillance, animal movement data and molecular typing. (2021) (3)
- My anaesthetic machine's on fire. (1997) (3)
- III. Unravelling the basis for the extended circulatory lifespan of human red blood cells and for the hyperdense collapse of irreversibly sickled cells (2020) (3)
- Mixture model clustering for peak filtering in metabolomics (2012) (3)
- Classification of Protein Interaction Sentences via Gaussian Processes (2009) (3)
- Fast inference in nonlinear dynamical systems using gradient matching (2016) (3)
- Disease Classification from Capillary Electrophoresis: Mass Spectrometry (2005) (3)
- Model based identification of transcription factor activity from microarray data (2006) (3)
- Ranking microbial metabolomic and genomic links using correlation-based and feature-based scoring functions (2020) (2)
- TopNEXt: Automatic DDA Exclusion Framework for Multi-Sample Mass Spectrometry Experiments (2023) (2)
- Exploiting Query Logs and Field-Based Models to Address Term Mismatch in an HIV/AIDS FAQ Retrieval System (2013) (2)
- Data mining and visualisation: general discussion. (2019) (2)
- The circulatory physiopathology of human red blood cells investigated with a multiplatform model of cellular homeostasis. II. Capillary transits and the role of PIEZO1 (2020) (2)
- Minimally-destructive atmospheric ionisation mass spectrometry authenticates authorship of historical manuscripts (2018) (2)
- Using topic modeling to detect cellular crosstalk in scRNA-seq (2021) (2)
- ShinyKGode: an interactive application for ODE parameter inference using gradient matching (2018) (2)
- The Missing Link: Developing a pipeline for accelerated antibiotic discovery from Streptomyces through linking ‘omics data (2020) (1)
- Stronger findings from mass spectral data through multi-peak modeling (2014) (1)
- In-silico Optimisation of Mass Spectrometry Fragmentation Strategies in Metabolomics (2019) (1)
- Risk factors for acute graft-versus-host disease associated with cyclosporine and methotrexate prophylaxis [letter; comment] (1993) (1)
- Simulated-to-real benchmarking of acquisition methods in untargeted metabolomics (2023) (1)
- Identifying new bio-markers for prostate cancer (2003) (1)
- Parameter inference in mechanistic models of cellular regulation and signalling pathways using gradient matching (2012) (1)
- Future challenges and new approaches: general discussion. (2019) (1)
- Bayesian Approaches for Mass Spectrometry‐Based Metabolomics (2011) (1)
- Simulated-to-real Benchmarking of Acquisition Methods in Metabolomics (2023) (1)
- INSIGHT: Helping domain experts make their knowledge more consistent (2012) (1)
- The circulatory physiopathology of human red blood cells investigated with a multiplatform model of cellular homeostasis. III. Senescence changes during the full circulatory lifespan (2020) (1)
- Forward and Inverse models in HCI: Physical simulation and deep learning for inferring 3D finger pose (2021) (1)
- Technical Report An Evaluation of Gaussian Processes for Sentence Classication and Protein Interaction Detection (2008) (1)
- Pre-interaction identification by dynamic grip classification (2017) (1)
- R package for statistical inference in dynamical systems using kernel based gradient matching: KGode (2020) (1)
- R package for statistical inference in dynamical systems using kernel based gradient matching: KGode (2020) (1)
- Development and validation of a non-remission risk prediction model in First Episode Psychosis: An analysis of two longitudinal studies (2021) (1)
- Principal Components Analysis and Latent Variable Models (2016) (0)
- Query Learning with Gaussian Processes (2003) (0)
- Alignment of multiple metabolomics LC-MS datasets from disparate diseases to reveal fever-associated metabolites (2021) (0)
- Integrated metabolome mining and annotation pipeline accelerates elucidation and prioritisation of specialised metabolites (2018) (0)
- Inference in nonlinear differential equations (2016) (0)
- Linear Modelling: A Maximum Likelihood Approach (2016) (0)
- Linear Modelling: A Least Squares Approach (2016) (0)
- Computational inference of biopathway dynamics and structures (2017) (0)
- Parameter Inference in Differential Equation Models Using Time Warped Gradient Matching (2017) (0)
- Ionisation Product Clustering to Improve Peak Alignment in LC-MS-based Metabolomics (2016) (0)
- Advancing fragmentation strategies development in LC-MS metabolomics (2020) (0)
- Markov Chain Monte Carlo Sampling (2016) (0)
- Metabolite identification from liquid chromotography / MS data using a Bayesian modelling approach (2013) (0)
- through multi-peak modeling (2014) (0)
- metabolites Ranking Metabolite Sets by Their Activity Levels (2021) (0)
- Data and text mining Ms 2 lda . org : web-based topic modelling for substructure discovery in mass spectrometry (2017) (0)
- Emergent Oscillatory Properties in Modelling Ion Transport of Guard Cells (2015) (0)
- Current trends in the management of chronic myeloid leukaemia. (1992) (0)
- User guide to the red blood cell model (RCM), a multiplatform JAVA-based model of human red blood cell homeostasis (2020) (0)
- OP-CBIO180088 2314..2315 (2018) (0)
- Parameter Inference in Differential Equation Models of Biopathways Using Time Warped Gradient Matching (2016) (0)
- Two-level infinite mixture for multi-domain data (2008) (0)
- EZ-Root-VIS: A Software Pipeline for the Rapid Analysis and Visual Reconstruction of 1 Averaged Root System Architecture (2018) (0)
- Discussion of Henning and Liao: How to find an appropriate clustering for mixed type variables with application to socio-economic stratification. Journal of the Royal Statistical Society: Series C. 62, 309-369 (2013) (0)
- Statistical inference in mechanistic models: time warping for improved gradient matching (2017) (0)
- Approximate parameter inference in systems biology using gradient matching: a comparative evaluation (2016) (0)
- Poster Session: Fluid Mechanics (2019) (0)
- From The Guardian to Google News Lab: (0)
- Identifying genes and pathways deregulated in chronic myeloid leukaemia stem cells through meta-analysis of transcriptomic data (2016) (0)
- Oncogene addiction in chronic myeloid leukaemia (2017) (0)
- Tyrosine Kinase Inhibitor Independent Gene Expression Signature in CML Offers New Targets for LSPC Eradication Therapy (2022) (0)
- Risk factors for acute graft-versus-host disease associated with cyclosporine and methotrexate prophylaxis. (1993) (0)
- Uncovering the BCR-ABL1 tyrosine kinase independent signature in chronic myeloid leukaemia stem cells (2016) (0)
- HDP-Align: Hierarchical Dirichlet Process Clustering for Multiple Peak Alignment of Liquid Chromatography Mass Spectrometry Data (2016) (0)
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Simon Rogers is affiliated with the following schools: