Simon Tavaré

Q: What Schools Are Affiliated With Simon Tavaré

Simon Tavaré is affiliated with the following schools: University of Sheffield, University College London, University of Minnesota, University of Southern California, Columbia University, University of Cambridge, University of Helsinki, Colorado State University

Simon Tavaré's AcademicInfluence.com Rankings

Simon Tavaré

Biology

#2117

World Rank

#3401

Historical Rank

Computational Biology

#52

World Rank

#52

Historical Rank

Bioinformatics

#58

World Rank

#59

Historical Rank

biology Degrees

Simon Tavaré

Mathematics

#3132

World Rank

#4685

Historical Rank

Measure Theory

#735

World Rank

#991

Historical Rank

mathematics Degrees

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Biology
Mathematics

Why Is Simon Tavaré Influential?

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According to Wikipedia, Simon Tavaré is the founding Director of the Herbert and Florence Irving Institute of Cancer Dynamics at Columbia University. Prior to joining Columbia, he was Director of the Cancer Research UK Cambridge Institute, Professor of Cancer Research at the Department of Oncology and Professor in the Department of Applied Mathematics and Theoretical Physics at the University of Cambridge.

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Simon Tavaré's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups (2012) (4591)
Some probabilistic and statistical problems in the analysis of DNA sequences (1986) (2893)
Relative Impact of Nucleotide and Copy Number Variation on Gene Expression Phenotypes (2007) (1734)
Intratumor heterogeneity in human glioblastoma reflects cancer evolutionary dynamics (2013) (1443)
Markov chain Monte Carlo without likelihoods (2003) (1236)
Population genomics of human gene expression (2007) (1203)
MicroRNA expression profiling of human breast cancer identifies new markers of tumor subtype (2007) (977)
Autophagy mediates the mitotic senescence transition. (2009) (962)
Inferring coalescence times from DNA sequence data. (1997) (925)
A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis (2008) (647)
Line-of-descent and genealogical processes, and their applications in population genetics models. (1984) (589)
Genome-Wide Associations of Gene Expression Variation in Humans (2005) (552)
Logarithmic Combinatorial Structures: A Probabilistic Approach (2003) (523)
Linkage disequilibrium: what history has to tell us. (2002) (519)
beadarray: R classes and methods for Illumina bead-based data (2007) (490)
Spatial Coupling of mTOR and Autophagy Augments Secretory Phenotypes (2011) (471)
Ancestral Inference in Population Genetics (1994) (435)
An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs). (2008) (399)
Piwi and piRNAs act upstream of an endogenous siRNA pathway to suppress Tc3 transposon mobility in the Caenorhabditis elegans germline. (2008) (398)
Coalescents and genealogical structure under neutrality. (1995) (390)
Similar gene expression patterns characterize aging and oxidative stress in Drosophila melanogaster. (2004) (377)
Patterns of somatic structural variation in human cancer genomes (2020) (377)
Investigating stem cells in human colon by using methylation patterns (2001) (354)
Defining Stem Cell Dynamics in Models of Intestinal Tumor Initiation (2013) (338)
High-resolution aCGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer (2007) (326)
Principal Manifolds for Data Visualization and Dimension Reduction (2007) (307)
Ordering of mutations in preinvasive disease stages of esophageal carcinogenesis (2014) (306)
Species-Specific Transcription in Mice Carrying Human Chromosome 21 (2008) (292)
Mutational signatures in esophageal adenocarcinoma define etiologically distinct subgroups with therapeutic relevance (2016) (283)
Using the fossil record to estimate the age of the last common ancestor of extant primates (2002) (271)
Sampling theory for neutral alleles in a varying environment. (1994) (259)
Independence of repressive histone marks and chromatin compaction during senescent heterochromatic layer formation. (2012) (259)
A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data (2009) (254)
The ages of alleles and a coalescent (1986) (249)
The age of a mutation in a general coalescent tree (1998) (246)
Modern computational approaches for analysing molecular genetic variation data (2006) (216)
Mutational signatures of ionizing radiation in second malignancies (2016) (207)
Dating primate divergences through an integrated analysis of palaeontological and molecular data. (2011) (202)
Continuous clonal labeling reveals small numbers of functional stem cells in intestinal crypts and adenomas. (2013) (200)
Comprehensive molecular characterization of mitochondrial genomes in human cancers (2017) (197)
Single sperm analysis of the trinucleotide repeats in the Huntington's disease gene: quantification of the mutation frequency spectrum. (1995) (191)
Forkhead Transcription Factors Establish Origin Timing and Long-Range Clustering in S. cerevisiae (2012) (180)
Sequencing of prostate cancers identifies new cancer genes, routes of progression and drug targets (2018) (169)
Genetic reconstruction of individual colorectal tumor histories. (2000) (164)
Choline Kinase Alpha as an Androgen Receptor Chaperone and Prostate Cancer Therapeutic Target (2015) (164)
BioHMM: a heterogeneous hidden Markov model for segmenting array CGH data (2006) (163)
Estimation and Modelling Repeated Patterns in High Order Markov Chains with the Mixture Transition Distribution Model (1994) (153)
Endometrial-peritoneal interactions during endometriotic lesion establishment. (2008) (149)
BayesPeak: Bayesian analysis of ChIP-seq data (2009) (148)
Breaking the waves: improved detection of copy number variation from microarray-based comparative genomic hybridization (2007) (147)
Synthetic lethality between androgen receptor signalling and the PARP pathway in prostate cancer (2017) (144)
Inferring clonal expansion and cancer stem cell dynamics from DNA methylation patterns in colorectal cancers (2009) (142)
Genome-wide mapping of ORC and Mcm2p binding sites on tiling arrays and identification of essential ARS consensus sequences in S. cerevisiae (2006) (141)
Imaging mass cytometry and multiplatform genomics define the phenogenomic landscape of breast cancer (2020) (141)
Poisson Process Approximations for the Ewens Sampling Formula (1992) (139)
The Cycle Structure of Random Permutations (1992) (137)
Sequential DNA methylation changes are associated with DNMT3B overexpression in colorectal neoplastic progression (2010) (136)
Genome-wide replication profiles indicate an expansive role for Rpd3L in regulating replication initiation timing or efficiency, and reveal genomic loci of Rpd3 function in Saccharomyces cerevisiae. (2009) (136)
The landscape of selection in 551 esophageal adenocarcinomas defines genomic biomarkers for the clinic (2018) (135)
Pretumor progression: clonal evolution of human stem cell populations. (2004) (131)
Characterisation of microRNA expression in post-natal mouse mammary gland development (2009) (129)
A unique recent origin of the allotetraploid species Arabidopsis suecica: Evidence from nuclear DNA markers. (2006) (125)
Clonal Decomposition and DNA Replication States Defined by Scaled Single-Cell Genome Sequencing (2019) (121)
Transcriptional profiling of MnSOD-mediated lifespan extension in Drosophila reveals a species-general network of aging and metabolic genes (2007) (120)
Using array-comparative genomic hybridization to define molecular portraits of primary breast cancers (2007) (118)
Simulating Probability Distributions in the Coalescent (1994) (116)
Loss of the interleukin-6 receptor causes immunodeficiency, atopy, and abnormal inflammatory responses (2019) (112)
Statistical issues in the analysis of Illumina data (2008) (111)
CNAseg - a novel framework for identification of copy number changes in cancer from second-generation sequencing data (2010) (109)
Progress in population genetics and human evolution (1997) (109)
Analysis of germline mutation spectra at the Huntington's disease locus supports a mitotic mutation mechanism. (1999) (108)
The pitfalls of platform comparison: DNA copy number array technologies assessed (2009) (107)
On the genealogy of nested subsamples from a haploid population (1984) (106)
Unrooted genealogical tree probabilities in the infinitely-many-sites model. (1995) (104)
New approaches for computer analysis of nucleic acid sequences. (1983) (104)
Counting human somatic cell replications: methylation mirrors endometrial stem cell divisions. (2005) (103)
The Stem Cell Population of the Human Colon Crypt: Analysis via Methylation Patterns (2007) (103)
Population-Based Genetic and Evolutionary Analysis of Chlamydia trachomatis Urogenital Strain Variation in the United States (2004) (102)
Independent Process Approximations for Random Combinatorial Structures (1994) (102)
Recombination in the ompA Gene but Not theomcB Gene of Chlamydia Contributes to Serovar-Specific Differences in Tissue Tropism, Immune Surveillance, and Persistence of the Organism (2001) (101)
Rad53 regulates replication fork restart after DNA damage in Saccharomyces cerevisiae. (2008) (101)
Genomic mapping by anchoring random clones: a mathematical analysis. (1991) (93)
The microRNA miR-124 controls gene expression in the sensory nervous system of Caenorhabditis elegans (2010) (92)
The level of origin firing inversely affects the rate of replication fork progression (2013) (89)
Computational Genome Analysis: An Introduction (2005) (88)
Lines-of-descent and genealogical processes, and their applications in population genetics models (1984) (85)
Limit Theorems for Combinatorial Structures via Discrete Process Approximations (1992) (83)
Estimating a nucleotide substitution rate for maize from polymorphism at a major domestication locus. (2005) (81)
Age-related human small intestine methylation: evidence for stem cell niches (2005) (79)
Serial dependence of observations leading to contingency tables, and corrections to chi-squared statistics (1983) (77)
Boosting Wnt activity during colorectal cancer progression through selective hypermethylation of Wnt signaling antagonists (2014) (77)
Flexible analysis of RNA-seq data using mixed effects models (2014) (76)
Single-molecule genomic data delineate patient-specific tumor profiles and cancer stem cell organization. (2013) (76)
Linear birth and death processes with killing (1982) (75)
Enhanced stem cell survival in familial adenomatous polyposis. (2004) (74)
Fixation and Spread of Somatic Mutations in Adult Human Colonic Epithelium (2018) (74)
Genome-wide analysis of a G-quadruplex-specific single-chain antibody that regulates gene expression (2009) (73)
Pediatric malignant germ cell tumors show characteristic transcriptome profiles. (2008) (72)
High-throughput analysis of candidate imprinted genes and allele-specific gene expression in the human term placenta (2010) (70)
Determinants of anti-PD-1 response and resistance in clear cell renal cell carcinoma (2021) (68)
Colorectal adenoma and cancer divergence. Evidence of multilineage progression. (1999) (67)
New Model for Estimating Glomerular Filtration Rate in Patients With Cancer (2017) (66)
Modeling Evolutionary Dynamics of Epigenetic Mutations in Hierarchically Organized Tumors (2011) (65)
Estimating substitution rates from molecular data using the coalescent. (1992) (65)
Cell Cycle Genes Are the Evolutionarily Conserved Targets of the E2F4 Transcription Factor (2007) (63)
The ages of mutations in gene trees (1999) (63)
Spatial and temporal distribution of the neutral polymorphisms in the last ZFX intron: analysis of the haplotype structure and genealogy. (1999) (61)
MicroRNA expression profiling of human breast cancer identifies new markers of tumour subtype (2007) (60)
Drosophila melanogaster p53 has developmental stage-specific and sex-specific effects on adult life span indicative of sexual antagonistic pleiotropy (2009) (60)
Transcriptional Dynamics Elicited by a Short Pulse of Notch Activation Involves Feed-Forward Regulation by E(spl)/Hes Genes (2013) (58)
Counting Divisions in a Human Somatic Cell Tree: How, What and Why (2006) (57)
Statistical Tests of the Coalescent Model Based on the Haplotype Frequency Distribution and the Number of Segregating Sites (2005) (56)
Monte Carlo inference methods in population genetics (1996) (53)
MMASS: an optimized array-based method for assessing CpG island methylation (2006) (53)
R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips (2009) (53)
Contributions to drug resistance in glioblastoma derived from malignant cells in the sub-ependymal zone. (2015) (52)
Three-dimensional tracking and behaviour monitoring of multiple fruit flies (2013) (51)
The birth process with immigration, and the genealogical structure of large populations (1987) (51)
Population Genetic Inference From Resequencing Data (2009) (50)
On random polynomials over finite fields (1993) (50)
Identification of Prognostic Phenotypes of Esophageal Adenocarcinoma in 2 Independent Cohorts. (2018) (50)
Estimating the Age of the Common Ancestor of Men from the ZFY Intron (1996) (49)
A screen of apoptosis and senescence regulatory genes for life span effects when over-expressed in Drosophila (2009) (49)
Computational Methods for the Coalescent (1997) (49)
Approximate Bayesian Computation and MCMC (2004) (49)
Identification of Subtypes of Barrett's Esophagus and Esophageal Adenocarcinoma Based on DNA Methylation Profiles and Integration of Transcriptome and Genome Data. (2020) (47)
Polymorphisms in the human DNA repair gene XPF. (1999) (47)
Normalization of metabolomics data with applications to correlation maps (2014) (47)
Epigenetic Profile of Human Adventitial Progenitor Cells Correlates With Therapeutic Outcomes in a Mouse Model of Limb Ischemia (2015) (46)
BayesPeak—an R package for analysing ChIP-seq data (2011) (46)
Phenotype Specific Analyses Reveal Distinct Regulatory Mechanism for Chronically Activated p53 (2015) (46)
Random Combinatorial Structures and Prime Factorizations (1997) (45)
Three-dimensional imaging mass cytometry for highly multiplexed molecular and cellular mapping of tissues and the tumor microenvironment (2021) (44)
The mutation rate of the human mtDNA deletion mtDNA4977. (1996) (43)
O fly, where art thou? (2008) (42)
Cycles, permutations and the structure of the yule process with immigration (1987) (42)
Fkh1 and Fkh2 Bind Multiple Chromosomal Elements in the S. cerevisiae Genome with Distinct Specificities and Cell Cycle Dynamics (2014) (41)
Estimating primate divergence times by using conditioned birth-and-death processes. (2009) (41)
Lack of increases in methylation at three CpG-rich genomic loci in non-mitotic adult tissues during aging (2007) (41)
Explaining differences in saturation levels for Affymetrix GeneChip® arrays (2007) (41)
Sex differences in oncogenic mutational processes (2019) (41)
Population-based genetic epidemiologic analysis of Chlamydia trachomatis serotypes and lack of association between ompA polymorphisms and clinical phenotypes. (2006) (40)
Limits of logarithmic combinatorial structures (2000) (40)
Part I: Ancestral Inference in Population Genetics (2004) (39)
multiSNV: a probabilistic approach for improving detection of somatic point mutations from multiple related tumour samples (2015) (39)
Modeling the evolution of the human mitochondrial genome. (1992) (39)
Modifier Effects between Regulatory and Protein-Coding Variation (2008) (37)
Primate Origins: Implications of a Cretaceous Ancestry (2007) (36)
The population genealogy of the infinitely-many neutral alleles model (1987) (35)
Total Variation Asymptotics for Poisson Process Approximations of Logarithmic Combinatorial Assemblies (1995) (35)
Hydrogen Peroxide Stimulates Activity and Alters Behavior in Drosophila melanogaster (2009) (34)
The age of a unique event polymorphism. (2000) (34)
Integrating Approximate Bayesian Computation with Complex Agent-Based Models for Cancer Research (2010) (34)
Genetic Mapping of Natural Variation in Schooling Tendency in the Threespine Stickleback (2015) (33)
Many colorectal cancers are “flat” clonal expansions (2009) (33)
The distribution of rare alleles (1995) (32)
A Bayesian approach to phylogeographic clustering (2011) (31)
Colorectal pretumor progression before and after loss of DNA mismatch repair. (2004) (31)
The Poisson–Dirichlet Distribution and the Scale-Invariant Poisson Process (1999) (28)
Landscapes of cellular phenotypic diversity in breast cancer xenografts and their impact on drug response (2021) (28)
The genealogy of a neutral mutation (2003) (27)
Serial Dependence in Contingency Tables (1983) (26)
Simultaneous tracking of movement and gene expression in multiple Drosophila melanogaster flies using GFP and DsRED fluorescent reporter transgenes (2009) (26)
A Rate for the Erdős-Turán Law (1994) (26)
The effects of rate variation on ancestral inference in the coalescent. (2000) (25)
Simultaneous tracking of fly movement and gene expression using GFP (2008) (24)
Human hair genealogies and stem cell latency (2006) (24)
Codon preference and primary sequence structure in protein-coding regions. (1989) (24)
Mobile element insertions are frequent in oesophageal adenocarcinomas and can mislead paired-end sequencing analysis (2015) (23)
A Note on Finite Homogeneous Continuous-Time Markov Chains (1979) (23)
A comparative analysis of whole genome sequencing of esophageal adenocarcinoma pre- and post-chemotherapy (2017) (23)
Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples (2020) (22)
High DNA Methylation Pattern Intratumoral Diversity Implies Weak Selection in Many Human Colorectal Cancers (2011) (22)
Authentication and characterisation of a new oesophageal adenocarcinoma cell line: MFD-1 (2015) (22)
Division-independent differentiation mandates proliferative competition among stem cells (2017) (22)
The Relative Timing of Mutations in a Breast Cancer Genome (2013) (21)
High-resolution array-CGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer (2007) (21)
On a test of Depaulis and Veuille. (2001) (21)
The linear birth‒death process: an inferential retrospective (2018) (20)
Non-linear analysis of GeneChip arrays (2006) (20)
Numbers of mutations to different types of colorectal cancer (2005) (20)
New Light on the Dates of Primate Origins and Divergence (2007) (19)
A CLASS OF DIFFUSION PROCESSES WITH KILLING ARISING IN POPULATION GENETICS (1983) (19)
The detection of particular genotypes in finite populations. II. The effects of partial penetrance and family structure. (1981) (19)
Some stochastic models for plasmid copy number. (1983) (18)
The importance of platform annotation in interpreting microarray data. (2010) (18)
The detection of a recessive visible gene in finite populations (1981) (18)
Statistical inference for the evolutionary history of cancer genomes (2019) (18)
Spike-in validation of an Illumina-specific variance-stabilizing transformation (2008) (17)
Inferring relative numbers of human leucocyte genome replications (2008) (17)
Comments on the age distribution of Markov processes (1981) (17)
On the Functional Central Limit Theorem for the Ewens Sampling Formula (1991) (16)
The detection of particular genotypes in finite populations. I. Natural selection effects. (1981) (16)
Abstract 5016: The human sub-ependymal zone harbors glioblastoma precursors and represents a distinct therapeutic target. (2013) (16)
Using GFP Video to Track 3D Movement and Conditional Gene Expression in Free-Moving Flies (2012) (15)
The Genealogy of the Birth, Death, and Immigration Process (2003) (14)
On Poisson–Dirichlet Limits for Random Decomposable Combinatorial Structures (1999) (14)
Metabolomic changes during cellular transformation monitored by metabolite–metabolite correlation analysis and correlated with gene expression (2015) (14)
Product length, dye choice, and detection chemistry in the bead-emulsion amplification of millions of single DNA molecules in parallel. (2009) (14)
Mathematical Techniques of Applied Probability:@@@Vol. 1-Discrete Time Models: Basic Theory@@@Vol. 2-Discrete Time Models: Techniques and Applications. (1985) (14)
HES5 silencing is an early and recurrent change in prostate tumourigenesis (2015) (13)
A Tale of Three Couplings: Poisson–Dirichlet and GEM Approximations for Random Permutations (2006) (13)
Testing the mean matrix in high‐dimensional transposable data (2014) (13)
A diffusion process with killing: the time to formation of recurrent deleterious mutant genes☆ (1982) (13)
Identification and correction of previously unreported spatial phenomena using raw Illumina BeadArray data (2010) (12)
Erratum to: Transcriptional profiling of MnSOD-mediated lifespan extension in Drosophila reveals a species-general network of aging and metabolic genes (2016) (12)
Review: D. Aldous, Probability Approximations via the Poisson Clumping Heuristic; A. D. Barbour, L. Holst, S. Janson, Poisson Approximation (1993) (11)
Stem Cell Chronicles: Autobiographies Within Genomes (2007) (10)
Time reversal and age distributions, I. Discrete-time Markov chains (1980) (9)
Strategies for analyzing highly enriched IP-chip datasets (2009) (9)
HDTD: analyzing multi-tissue gene expression data (2016) (9)
Hidden copy number variation in the HapMap population (2008) (9)
Automated quantification of the schooling behaviour of sticklebacks (2013) (8)
ON THE GENEALOGY OF NESTED SUBSAMPLES (1984) (8)
A convergence theorem for symmetric functionals of random partitions (1992) (8)
CNAnova: a new approach for finding recurrent copy number abnormalities in cancer SNP microarray data (2010) (8)
The number of components in a logarithmic combinatorial structure (2000) (8)
Numbers of copy-number variations and false-negative rates will be underestimated if we do not account for the dependence between repeated experiments. (2007) (8)
Older individuals appear to acquire mitotically older colorectal cancers (2009) (8)
Detecting Particular Genotypes in Populations Under Nonrandom Mating (1982) (8)
Inferring Population Parameters From Single-Feature Polymorphism Data (2006) (8)
Exploiting the Feller Coupling for the Ewens Sampling Formula (2016) (8)
The magical Ewens sampling formula (2021) (7)
Using expression arrays for copy number detection: an example from E. coli (2007) (7)
Simulating the component counts of combinatorial structures. (2018) (7)
Geometric optimization methods for the analysis of gene expression data (2007) (6)
Calling Sample Mix-Ups in Cancer Population Studies (2012) (6)
Corrigendum: Mutational signatures in esophageal adenocarcinoma define etiologically distinct subgroups with therapeutic relevance (2017) (6)
Ewens Sampling Formula (2006) (5)
The Feller Coupling for random derangements (2021) (5)
Codon preference and primary sequence structure in protein-coding regions (1989) (5)
International Conference on Random Mappings, Partitions, and Permutations (1992) (4)
CamGFR v2: A New Model for Estimating the Glomerular Filtration Rate from Standardized or Non-standardized Creatinine in Patients with Cancer (2020) (4)
The cost of reducing starting RNA quantity for Illumina BeadArrays: A bead-level dilution experiment (2010) (4)
BOOK REVIEW D. Arxmus, Probability Approximations via the Poisson Clumping Heuristic. Springer, Berlin, 1989. (1993) (4)
Is knowing the age-order of alleles in a sample useful in testing for selective neutrality? (1989) (4)
The Effect of Nonhomogeneous Clone Length Distribution on the Progress of an STS Mapping Project (2000) (4)
Multicenter Validation of the CamGFR Model for Estimated Glomerular Filtration Rate (2019) (4)
Data analysis issues for allele-specific expression using Illumina's GoldenGate assay (2010) (4)
13 DNA Methylation Arrays: Methods and Analysis (2008) (4)
Dual diffusions, killed diffusions, and the age distribution problem in population genetics. (1979) (3)
Estimation in the Mixture Transition Distribution Model for High Order Markov Chains (1991) (3)
Estimating the primate divergence time using conditioned birth-and-death processes (2009) (3)
On the History of ABC (2018) (3)
Fisher’s measure of variability in repeated samples (2023) (3)
Assessing senescence in Drosophila using video tracking. (2013) (3)
Age distributions for Markov processes in genetics (1978) (3)
A Model for Phylogenetic Inference Using Structural and Chemical Covariates (2000) (3)
Stranger , Variation on Gene Expression Phenotypes Relative Impact of Nucleotide and Copy Number (2007) (3)
Taking into account the temporal ranges of unobserved species: reconciliation of fossil and molecular clock estimates of primate origins? (1998) (3)
The mutREAD method detects mutational signatures from low quantities of cancer DNA (2020) (3)
beadarray , BASH and HULK-tools to increase the value of Illumina BeadArray experiments (2009) (3)
Random permutations and neutral evolution models (1990) (3)
Rearrangement processes and structural variations show evidence of selection in oesophageal adenocarcinomas (2022) (3)
Sojourn times for conditioned Markov chains in genetics (1976) (2)
Saccharomyces cerevisiae Rad 53 regulates replication fork restart after DNA damage in data (2008) (2)
Ancestral inference from haplotypes and mutations. (2017) (2)
On the independence structure that exists within a pedigree with an application to testing for a major gene. (1979) (2)
Variation on Gene Expression Phenotypes Relative Impact of Nucleotide and Copy (2007) (2)
The Imaging and Molecular Annotation of Xenografts and Tumours (IMAXT) High Throughput Data and Analysis Infrastructure (2021) (2)
Finding Behavioral Motifs in Fly Trajectories (2009) (1)
The roles of mutation rate and selective pressure on observed levels of the human mitochondrial DNA deletion $\rm mtDNA\sp 4977$ (2003) (1)
Epidemic and Genetic Models (1984) (1)
OMICS AND PROGNSTIC MARKERS (2013) (1)
Primate Divergences through an Integrated Analysis of Palaeontological and Molecular Data (2010) (1)
Correcting for probe-design in the analysis of gene-expression microarrays (2007) (1)
Quantifying the impact of inter-site heterogeneity on the distribution of ChIP-seq data (2014) (1)
“ I See Dead People : ” Gene Mapping Via Ancestral Inference (2000) (1)
A genealogical description of the infinitely-many neutral alleles model (1987) (1)
Advances in Statistical Bioinformatics: Statistical Aspects of ChIP-Seq Analysis (2013) (1)
Ancestral distributions in the coalescent (2017) (1)
Conference on Ecological Statistics—A Summary Report (1978) (1)
Author Correction: Pan-cancer analysis of whole genomes (2023) (1)
Fibroblastic reticular cells predict response to immune checkpoint inhibitors (2020) (1)
A probabilistic approach to analytic arithmetic on algebraic function fields (2005) (1)
OC-008 Defining the genetic landscape of oesophageal adenocarcinoma by next-generation sequencing (2012) (1)
Boosting Wnt activity during colorectal cancer progression through selective hypermethylation of Wnt signaling antagonists (2014) (1)
COMPLEX EVOLUTIONARY DYNAMICS GENERATES GENETIC DIVERSITY AND INTRA-TUMOR HETEROGENEITY IN INDIVIDUAL PATIENTS WITH GLIOBLASTOMA (2014) (1)
Author Correction: Authentication and characterisation of a new oesophageal adenocarcinoma cell line: MFD-1 (2019) (1)
Time reversion and age distributions (1979) (0)
Using Methylation Patterns for Reconstructing Cell Division Dynamics: Assessing Validation Experiments (2016) (0)
Endoscopic tumour morphology impacts survival in adenocarcinoma of the oesophagus. (2020) (0)
935 The Timing of Oncogenic Events in the Evolution of the Oesophageal Adenocarcinoma Genome and Implications for Clinical Diagnostics (2014) (0)
825 Towards a systems-level view of breast cancer through the joint analysis of multi-dimensional data (2010) (0)
O4.05GENETIC DIVERSITY AND INTRA-TUMOR HETEROGENEITY IN HUMAN GLIOBLASTOMA (2014) (0)
OC-066 The Cancer Research UK (Cruk) Funded ICGC Oesophageal Adenocarcinoma Project: MRC Research Centre and Cruk Cambridge Research Institute (2013) (0)
O039 The interferonscape: Systems biology of interferon stimulated pathways and networks (2012) (0)
Erratum to: Transcriptional profiling of MnSOD-mediated lifespan extension in Drosophila reveals a species-general network of aging and metabolic genes (2016) (0)
Stochastic models for the evolution of stem cells in colon crypts (2007) (0)
Sa2074 The mutational architecture of oesophageal adenocarcinoma (2013) (0)
The landscape of selection in 551 esophageal adenocarcinomas defines genomic biomarkers for the clinic (2019) (0)
Metabolomic changes during cellular transformation monitored by metabolite–metabolite correlation analysis and correlated with gene expression (2015) (0)
Patient-specific cancer genes contribute to recurrently perturbed pathways and establish therapeutic vulnerabilities in esophageal adenocarcinoma (2019) (0)
ABC for ancestral inference (2011) (0)
Supplementary Information for BayesPeak-An R package for analysing ChIP-seq data (2010) (0)
TOR autophagy spatial coupling compartment (TASCC) augments secretory phenotypes (2011) (0)
articleHigh-throughput analysis of candidate imprinted genes and allele-specific gene expression in the human term placenta (2019) (0)
BIOINFORMATICS CNAseg—a novel framework for identiﬁcation of copy number changes in cancer from second-generation sequencing data (2010) (0)
Fibroblastic reticular cells predict response to cancer immunotherapy (2020) (0)
HDTD: Statistical Inference about the Mean Matrix and the Covariance Matrices in High-Dimensional Transposable Data (2014) (0)
The mutREAD method detects mutational signatures from low quantities of cancer DNA (2020) (0)
Abstract LB-176: The human androgen receptor regulates DNA damage response (DDR) in prostate cancer (2016) (0)
O10: An improved algorithm for segmenting array-CGH data (2005) (0)
NpgRj_Ng_2142 1..8 (2007) (0)
Author Correction: Inferring structural variant cancer cell fraction (2022) (0)
The architecture of clonal expansions in morphologically normal tissue from cancerous and non-cancerous prostates (2022) (0)
Validation of a new model for estimating glomerular filtration rate in patients with cancer. (2018) (0)
Estimating the Age of the Common Ancestor of Men from the ZFY Intron (1996) (0)
Single-cell RNA sequencing unifies developmental programs of Esophageal and Gastric Intestinal Metaplasia. (2023) (0)
Synthetic lethality between androgen receptor signalling and the PARP pathway in prostate cancer (2017) (0)
High-throughput analysis of methylation patterns to track cell divisions (2008) (0)
Genetic Clues to Dispersal in Human Populations: Retracing the Past from the Present (2001) (0)
Mathematical Modelling of Murine Stem Cells in Intestinal Epithelium and Adenomas (2013) (0)
Corrigendum: A comparative analysis of whole genome sequencing of esophageal adenocarcinoma pre- and post-chemotherapy. (2017) (0)
Analysis of copy number independent regions of expression bias in breast cancer using partial correlation (2008) (0)
Metabolite-Metabolite correlation maps : A novel method to understand metabolic pathways (2009) (0)
Linkage disequilibrium , haplotype evolution , and the coalescent (0)
GENE-24. IMPACT OF THERAPY ON EVOLUTION OF GBM (2018) (0)
Author Correction: Patterns of somatic structural variation in human cancer genomes (2020) (0)
Population Genetics of Neoplasms (2016) (0)
Workshop in computational molecular biology, April 15, 1991--April 14, 1994 (1995) (0)
Phenotype-associated p53-responsive gene expression in IMR90 cells. (2015) (0)
PWE-171 Mobile element insertions are frequent and potentially mutagenic events in oesophageal carcinogenesis (2015) (0)
Genetic mapping of natural variation in schooling tendency in the 2뀀Ƞ threespine stickleback 3뀀Ƞ 4뀀Ƞ (2015) (0)
Abstracts from the 2012 BNOS Conference (2012) (0)
Author Correction: Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples (2020) (0)
Mobile element insertions are frequent in oesophageal adenocarcinomas and can mislead paired-end sequencing analysis (2015) (0)
Discussion on the paper by B. S. Weir and C. J. Basten (1990) (0)
Assessment of candidate imprinted genes in the human term placenta (2009) (0)
Sequencing of prostate cancers identifies new cancer genes, routes of progression and drug targets (2018) (0)
Acknowledgement to the Reviewers (2013) (0)
Work ( s ) : Mathematical Techniques of Applied Probability : by ; Vol . 1-Discrete Time Models : Basic Theory ; by ; Vol . 2-Discrete Time Models : Techniques and Applications (2020) (0)
Stochastic models in colon cancer (2004) (0)
12 Geometric Optimization Methods for the Analysis of Gene Expression Data (2007) (0)
PCR duplicate proportion estimation and consequences for DNA copy number calculations (2021) (0)
Subject Index Vol. 78, 2007 (2007) (0)
Supplementary figure 6 Asim et al (2015) (0)
PS1-022. The InterferonScape: An insight into the Integrative Systems Biology of Interferon Stimulated Genes (2011) (0)
Coronary heart disease. (1992) (0)
PTU-153 The Timing Of Oncogenic Events In The Evolution Of The Oesophageal Adenocarcinoma Genome And Implications For Clinical Diagnostics (2014) (0)
Author Correction: The evolutionary history of 2,658 cancers (2023) (0)
Species-Specific Transcription in Mice Carrying (2008) (0)
Chapter 3 Population Genetics of Neoplasms (2017) (0)
A pr 2 01 0 1 Assessing molecular variability in cancer genomes (2010) (0)
Abstract PL04-03: Cancer stem cells (2010) (0)
Forkhead (Fox) transcription factors open a new dimension in understanding the epigenetic control of replication origins in S. cerevisiae (2013) (0)
Year : 1997 Random combinatorial structures and prime factorizations (2010) (0)
Another Approach to the Assessment of Growth in Early Infancy (1979) (0)
Abstract 3342: Tumor-initiating cells in human glioblastoma are heterogeneous populations which reside in distinct environmental niches (2012) (0)
A single gene expressed in fibroblastic reticular cells predicts response to cancer immunotherapy (2020) (0)
5. ANCESTRAL INFERENCE FROM DNA SEQUENCE DATA (2003) (0)
Using HDTD to Analyze High-Dimensional Transposable Data : An Application in Genetics (2016) (0)
Author Correction: Authentication and characterisation of a new oesophageal adenocarcinoma cell line: MFD-1 (2019) (0)
Introduction to the Paul Joyce special issue. (2018) (0)
Estimating the stratigraphic ranges of species not preserved in the fossil record: reconciliation of molecular and fossil estimates of primate divergence times? (2001) (0)
Using non-local background modeling to quantify the schooling behaviour of sticklebacks (2012) (0)
Abstract IA04: Understanding tumor heterogeneity in glioblastoma (2015) (0)

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