Stefano Lonardi
#125,379
Most Influential Person Now
Italian computer scientist and bioinformatician
Stefano Lonardi's AcademicInfluence.com Rankings
Stefano Lonardicomputer-science Degrees
Computer Science
#8818
World Rank
#9271
Historical Rank
Data Mining
#249
World Rank
#250
Historical Rank
Database
#7469
World Rank
#7742
Historical Rank
Stefano Lonardibiology Degrees
Biology
#9012
World Rank
#12166
Historical Rank
Bioinformatics
#176
World Rank
#178
Historical Rank
Computational Biology
#311
World Rank
#312
Historical Rank
Download Badge
Computer Science Biology
Stefano Lonardi's Degrees
- PhD Computer Science University of Bologna
- Masters Computer Science University of Bologna
- Bachelors Computer Science University of Bologna
Similar Degrees You Can Earn
Why Is Stefano Lonardi Influential?
(Suggest an Edit or Addition)According to Wikipedia, Stefano Lonardi is an Italian computer scientist and bioinformatician, currently Professor and Vice Chair of the Department of Computer Science and Engineering at University of California, Riverside. He is also a faculty member of the Graduate Program in Genetics, Genomics and Bioinformatics, the Center for Plant Cell Biology, the Institute for Integrative Genome Biology, and the Graduate Program in Cell, Molecular and Developmental Biology.
Stefano Lonardi's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- A symbolic representation of time series, with implications for streaming algorithms (2003) (1941)
- Experiencing SAX: a novel symbolic representation of time series (2007) (1449)
- A physical, genetic and functional sequence assembly of the barley genome (2012) (1332)
- A chromosome conformation capture ordered sequence of the barley genome (2017) (1011)
- Probabilistic discovery of time series motifs (2003) (647)
- Towards parameter-free data mining (2004) (621)
- Development and implementation of high-throughput SNP genotyping in barley (2009) (592)
- Efficient and Accurate Construction of Genetic Linkage Maps from the Minimum Spanning Tree of a Graph (2008) (471)
- CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers (2015) (470)
- Finding surprising patterns in a time series database in linear time and space (2002) (468)
- Composition Profiler: a tool for discovery and visualization of amino acid composition differences (2007) (350)
- Immune profile and mitotic index of metastatic melanoma lesions enhance clinical staging in predicting patient survival (2009) (316)
- Mining motifs in massive time series databases (2002) (275)
- Comprehensive benchmarking and ensemble approaches for metagenomic classifiers (2017) (217)
- Visually mining and monitoring massive time series (2004) (186)
- Time-series Bitmaps: a Practical Visualization Tool for Working with Large Time Series Databases (2005) (169)
- Assignment of orthologous genes via genome rearrangement (2005) (154)
- Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis (2008) (152)
- Genome resources for climate‐resilient cowpea, an essential crop for food security (2017) (148)
- Nucleosome landscape and control of transcription in the human malaria parasite. (2010) (147)
- Visualizing and Discovering Non-Trivial Patterns in Large Time Series Databases (2005) (142)
- An Improved Consensus Linkage Map of Barley Based on Flow‐Sorted Chromosomes and Single Nucleotide Polymorphism Markers (2011) (141)
- Assumption-Free Anomaly Detection in Time Series (2005) (141)
- A Novel Bit Level Time Series Representation with Implication of Similarity Search and Clustering (2005) (131)
- Compression-based data mining of sequential data (2007) (120)
- Construction of a map-based reference genome sequence for barley, Hordeum vulgare L. (2017) (120)
- Time Series Epenthesis: Clustering Time Series Streams Requires Ignoring Some Data (2011) (115)
- Accurate Construction of Consensus Genetic Maps via Integer Linear Programming (2011) (114)
- The genome of cowpea (Vigna unguiculata [L.] Walp.) (2019) (113)
- Generating and Reversing Chronic Wounds in Diabetic Mice by Manipulating Wound Redox Parameters (2014) (110)
- Off-line compression by greedy textual substitution (2000) (103)
- Higher classification sensitivity of short metagenomic reads with CLARK-S (2016) (102)
- Efficient Detection of Unusual Words (2000) (101)
- A Bit Level Representation for Time Series Data Mining with Shape Based Similarity (2006) (93)
- The genome of cowpea (Vigna unguiculata [L.] Walp.). (2019) (87)
- BRAT-BW: efficient and accurate mapping of bisulfite-treated reads (2012) (86)
- Compression of biological sequences by greedy off-line textual substitution (2000) (83)
- A multi‐parent advanced generation inter‐cross (MAGIC) population for genetic analysis and improvement of cowpea (Vigna unguiculata L. Walp.) (2018) (81)
- Genome-wide mapping of DNA methylation in the human malaria parasite Plasmodium falciparum. (2013) (77)
- OligoSpawn: a software tool for the design of overgo probes from large unigene datasets (2006) (73)
- Gridding and compression of microarray images (2004) (73)
- BRAT: bisulfite-treated reads analysis tool (2010) (70)
- On the accurate construction of consensus genetic maps. (2008) (68)
- Monotony of surprise and large-scale quest for unusual words (2002) (65)
- VizTree: a Tool for Visually Mining and Monitoring Massive Time Series Databases (2004) (63)
- Discovering the Intrinsic Cardinality and Dimensionality of Time Series Using MDL (2011) (62)
- Graphlet Kernels for Prediction of Functional Residues in Protein Structures (2010) (59)
- DNA-encoded nucleosome occupancy is associated with transcription levels in the human malaria parasite Plasmodium falciparum (2014) (56)
- Application of near-infrared reflectance spectrometry to the analytical control of pharmaceuticals: ranitidine hydrochloride tablet production. (1996) (55)
- String Matching in Hardware Using the FM-Index (2011) (54)
- Validating genome-wide CRISPR-Cas9 function improves screening in the oleaginous yeast Yarrowia lipolytica. (2019) (53)
- Monotony of surprise and large-scale quest for unusual words. (2003) (53)
- MDL-based time series clustering (2012) (50)
- Mustache: multi-scale detection of chromatin loops from Hi-C and Micro-C maps using scale-space representation (2020) (50)
- Mechanisms of small RNA generation from cis-NATs in response to environmental and developmental cues. (2013) (49)
- Computing the Assignment of Orthologous Genes via Genome Rearrangement (2005) (49)
- Combinatorial Pooling Enables Selective Sequencing of the Barley Gene Space (2013) (48)
- Biological Data Mining (2009) (48)
- Intelligent Icons: Integrating Lite-Weight Data Mining and Visualization into GUI Operating Systems (2006) (47)
- Nucleosome occupancy at transcription start sites in the human malaria parasite: a hard-wired evolution of virulence? (2011) (47)
- Finding biclusters by random projections (2004) (45)
- Some theory and practice of greedy off-line textual substitution (1998) (44)
- On the average sequence complexity (2004) (43)
- Soft-core Processor Customization using the Design of Experiments Paradigm (2007) (43)
- Sequencing of 15 622 gene‐bearing BACs clarifies the gene‐dense regions of the barley genome (2015) (42)
- Efficient Selection of Unique and Popular Oligos for Large EST Databases (2003) (41)
- FHAST: FPGA-Based Acceleration of Bowtie in Hardware (2015) (39)
- Identification of candidate genes and molecular markers for heat-induced brown discoloration of seed coats in cowpea [Vigna unguiculata (L.) Walp] (2014) (37)
- A comparative evaluation of genome assembly reconciliation tools (2017) (37)
- Near-infrared reflectance spectrometry in the determination of the physical state of primary materials in pharmaceutical production (1995) (35)
- Error Resilient LZ'77 Data Compression: Algorithms, Analysis, and Experiments (2007) (35)
- NOrMAL: accurate nucleosome positioning using a modified Gaussian mixture model (2012) (33)
- A parallel edge-betweenness clustering tool for Protein-Protein Interaction networks (2007) (33)
- Application of near-infrared reflectance analysis to the integrated control of antibiotic tablet production (1995) (32)
- Joint source-channel LZ'77 coding (2003) (32)
- Authentication of LZ-77 compressed data (2003) (32)
- Dot plots for time series analysis (2005) (29)
- APPLICATION OF NIRS TO THE CONTROL OF PHARMACEUTICALS IDENTIFICATION AND ASSAY OF SEVERAL PRIMARY MATERIALS (1992) (29)
- When less is more: 'slicing' sequencing data improves read decoding accuracy and de novo assembly quality (2015) (28)
- Exploration of Short Reads Genome Mapping in Hardware (2010) (26)
- Seed Coat Pattern QTL and Development in Cowpea (Vigna unguiculata [L.] Walp.) (2019) (25)
- Multithreaded FPGA acceleration of DNA sequence mapping (2012) (25)
- Selfish: discovery of differential chromatin interactions via a self-similarity measure (2019) (25)
- De novo meta-assembly of ultra-deep sequencing data (2015) (24)
- A Practical Tool for Visualizing and Data Mining Medical Time Series (2005) (24)
- A probabilistic method for small RNA flowgram matching. (2007) (23)
- Near infrared reflectance spectroscopy applied to pharmaceutical quality control. Identification and assay of cephalosporins (1991) (23)
- Error-resilient LZW data compression (2006) (23)
- Drug analysis by near-infra-red reflectance spectroscopy. Determination of the active ingredient and water content in antibiotic powders. (1989) (22)
- Mustache: multi-scale detection of chromatin loops from Hi-C and Micro-C maps using scale-space representation (2020) (22)
- Global detectors of unusual words: design, implementation, and applications to pattern discovery in biosequences (2001) (21)
- Online Information Compression in Sensor Networks (2006) (21)
- IEEE/ACM TRANSACTIONS ON (2004) (20)
- A parallel algorithm for clustering protein-protein interaction networks (2005) (19)
- BRAT-nova: fast and accurate mapping of bisulfite-treated reads (2016) (18)
- Efficient and Accurate Construction of Genetic Linkage Maps from Noisy and Missing Genotyping Data (2007) (18)
- Using the minimum description length to discover the intrinsic cardinality and dimensionality of time series (2015) (18)
- Length-based encoding of binary data in DNA. (2008) (18)
- Discovery of repetitive patterns in DNA with accurate boundaries (2005) (17)
- Application of Near Infrared Reflectance Spectroscopy to pharmaceutical control. I. Preliminary investigation of the uniformity of tablets content (1990) (16)
- Chromatin-driven de novo discovery of DNA binding motifs in the human malaria parasite (2011) (15)
- Efficient information compression in sensor networks (2006) (15)
- Evolution versus "intelligent design": comparing the topology of protein-protein interaction networks to the Internet. (2006) (15)
- DeeplyEssential: a deep neural network for predicting essential genes in microbes (2019) (14)
- Two-Level Microprocessor-Accelerator Partitioning (2007) (14)
- Verbumculus and the discovery of unusual words (2008) (14)
- Storage and transmission of microarray images. (2005) (13)
- Novo&Stitch: accurate reconciliation of genome assemblies via optical maps (2018) (13)
- Accurate detection of chimeric contigs via Bionano optical maps (2018) (13)
- A compartmentalized approach to the assembly of physical maps (2007) (13)
- Accurate Decoding of Pooled Sequenced Data Using Compressed Sensing (2013) (13)
- PuFFIN - a parameter-free method to build nucleosome maps from paired-end reads (2014) (13)
- OMGS: Optical Map-based Genome Scaffolding (2019) (13)
- Analysis of secondary structure elements of proteins using indexing techniques (2002) (12)
- Higher Classification Accuracy of Short Metagenomic Reads by Discriminative Spaced k-mers (2015) (12)
- A multi-parent advanced generation inter-cross population for genetic analysis of multiple traits in cowpea (Vigna unguiculata L. Walp.) (2017) (11)
- Efficient Genome-Wide TagSNP Selection Across Populations via the Linkage Disequilibrium Criterion (2010) (11)
- Computing the Minimal Tiling Path from a Physical Map by Integer Linear Programming (2008) (11)
- Efficient Discovery of Unusual Patterns in Time Series (2006) (10)
- Efficient algorithms for genome-wide tagSNP selection across populations via the linkage disequilibrium criterion. (2007) (10)
- Error resilient LZ'77 scheme and its analysis (2004) (9)
- Deciphering histone code of transcriptional regulation in malaria parasites by large-scale data mining (2014) (8)
- Clock-Frequency Assignment for Multiple Clock Domain Systems-on-a-Chip (2007) (8)
- A data compression technique for sensor networks with dynamic bandwidth allocation (2005) (8)
- A Graph-Theoretical Approach to the Selection of the Minimum Tiling Path from a Physical Map (2013) (8)
- Integrating Lite-Weight but Ubiquitous Data Mining into GUI Operating Systems (2005) (7)
- A speed-up for the commute between subword trees and DAWGs (2002) (7)
- Augmenting LZ‐77 with authentication and integrity assurance capabilities (2004) (6)
- Efficient and Accurate Detection of Topologically Associating Domains from Contact Maps (2017) (6)
- Fractal image approximation and orthogonal bases (1999) (6)
- Validating genome-wide CRISPR-Cas9 function in the non-conventional yeast Yarrowia lipolytica (2018) (6)
- A Linear-Time Algorithm for Predicting Functional Annotations from PPI Networks (2008) (6)
- A Compression-Boosting Transform for Two-Dimensional Data (2006) (6)
- Analysis of nucleosome positioning landscapes enables gene discovery in the human malaria parasite Plasmodium falciparum (2015) (6)
- Genome-wide functional screens enable the prediction of high activity CRISPR-Cas9 and -Cas12a guides in Yarrowia lipolytica (2021) (6)
- Scrible: Ultra-Accurate Error-Correction of Pooled Sequenced Reads (2015) (5)
- Prediction of histone post-translational modifications using deep learning (2020) (5)
- Barcoding-free BAC Pooling Enables Combinatorial Selective Sequencing of the Barley Gene Space (2011) (5)
- Deconvoluting the BAC-gene relationships using a physical map. (2007) (5)
- When Less is More: “Slicing” Sequencing Data Improves Read Decoding Accuracy and De Novo Assembly Quality (2015) (4)
- Efficient and accurate construction of genetic linkage maps : Supplementary Text S 1 (2008) (4)
- Data Mining in Bioinformatics: Selected Papers from BIOKDD (2010) (4)
- Linear global detectors of redundant and rare substrings (1999) (4)
- Genome Resources For Cowpea Genotype IT97K-499-35 (2011) (4)
- Application of near infrared reflectance spectroscopy (NIRS) to several antibiotic compounds (1992) (3)
- Novel Gene Discovery in the Human Malaria Parasite using Nucleosome Positioning Data. (2010) (3)
- Deconvoluting BAC-Gene Relationships Using a Physical Map (2008) (3)
- On the accurate construction of genetic linkage maps (2008) (3)
- Proceedings of the 17th international conference on String processing and information retrieval (2010) (3)
- A Linear-time Algorithm for Predicting Functional Annotations from Protein Protein Interaction Networks ∗ (2007) (3)
- A compression-boosting transform for 2D data (2005) (3)
- Assignment of orthologous genes via genome rearrangement - eScholarship (2005) (3)
- Graph theoretical approaches to the analysis of large-scale genomic data (2006) (3)
- Progress On Physical Mapping Of The Gene-Space Of Barley (2007) (2)
- PuFFIN - a parameter-free method to build nucleosome maps from paired-end reads (2014) (2)
- CPM's 20th Anniversary: A Statistical Retrospective (2009) (2)
- Genome-wide functional screens enable the prediction of high activity CRISPR-Cas9 and -Cas12a guides in Yarrowia lipolytica (2022) (2)
- Genome resources for climate-resilient cowpea, an essential crop for food security (2016) (2)
- Bisulfite-Conversion-Based Methods for DNA Methylation Sequencing Data Analysis (2016) (2)
- String processing and information retrieval : 17th International Symposium, SPIRE 2010, Los Cabos, Mexico, October 11-13, 2010 : proceedings (2010) (2)
- CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers (2015) (2)
- Reference-agnostic representation and visualization of pan-genomes (2021) (2)
- Computational Biology (2004) (2)
- Sequencing of 15,622 gene-bearing BACs reveals new features of the barley genome (2015) (2)
- A view of the pan-genome of domesticated cowpea (Vigna unguiculata [L.] Walp.) (2022) (2)
- Applying LVQ techniques to compress historical information in sensor networks (2005) (1)
- Reference guided assembly of heterogeneous DNA sequencing data sets to improve the quality of P. falciparum DD2 genome (2012) (1)
- Correction to: Comprehensive benchmarking and ensemble approaches for metagenomic classifiers (2019) (1)
- A Probabilistic Model for Small RNA Flowgram Matching (2008) (1)
- Karyotype variation, spontaneous genome rearrangements affecting chemical insensitivity, and expression level polymorphisms in the plant pathogen Phytophthora infestans revealed using its first chromosome-scale assembly (2022) (1)
- ThIEF: Finding Genome-wide Trajectories of Epigenetics Marks (2017) (1)
- Verbumculus: Fast Discovery and Visualization of Unusual Words (2000) (1)
- We Have Seen the Future, and It Is Symbolic (2004) (1)
- mClass: Cancer Type Classification with Somatic Point Mutation Data (2018) (1)
- Faculty Opinions recommendation of Extensive sequencing of seven human genomes to characterize benchmark reference materials. (2017) (1)
- Augmenting LZ-77 with authentication and integrity assurance capabilities: Research Articles (2004) (1)
- ISMB 2014 Proceedings Papers Committee (2014) (1)
- BIOKDD 2008: a workshop report on data mining in bioinformatics (2008) (1)
- DNA-encoded nucleosome occupancy is associated with transcription levels in the human malaria parasite Plasmodium falciparum (2014) (1)
- De novo assembly of ultra-deep sequencing data (2014) (1)
- acCRISPR: An activity-correction method for improving the accuracy of CRISPR screens (2022) (1)
- Pattern Discovery in Biosequences Pattern Discovery in Biosequences (2005) (0)
- Sequence analysis BRAT : bisulfite-treated reads analysis tool (2009) (0)
- Updates On Contig Assembly With Gene-Containing BACs Of Barley (2008) (0)
- Using the minimum description length to discover the intrinsic cardinality and dimensionality of time series (2014) (0)
- UNIVERSITY OF CALIFORNIA RIVERSIDE A Systematic Approach for Understanding and Modeling the Performance of Network Security Devices A Dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy (2012) (0)
- Mu-oz-Amatria-n et al-2015-The Plant Journal (2015) (0)
- A Metagenomic Analysis of Environmental and Clinical Samples Using a Secure Hybrid Cloud Solution. (2019) (0)
- Identification of candidate genes and molecular markers for heat-induced brown discoloration of seed coats in cowpea [Vigna unguiculata (L.) Walp] (2014) (0)
- 7th International Workshop on Data Mining in Bioinformatics (BIOKDD 2007) (2007) (0)
- A Decomposition Approach for Discovering Network Building Blocks (2007) (0)
- Coupling expressed sequences and bacterial artificial chromosome resources to access the barley genome (2018) (0)
- Data Descriptor: Construction of a map-based reference genome sequence for barley, Hordeum vulgare L (2017) (0)
- CLARK, accurate and efficient classification of DNA sequences (2014) (0)
- Sequence analysis Prediction of histone post-translational modifications using deep learning (2021) (0)
- Cs 374 Paper Summary – Wissam Kazan (2006) (0)
- Babesia duncani multi-omics identifies virulence factors and drug targets (2023) (0)
- Seventh International Workshop on Data Mining in Bioinformatics (2007) (0)
- UNIVERSITY OF CALIFORNIA RIVERSIDE Optical Map-Based Genome Scaffolding A Dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy (2019) (0)
- UNIVERSITY OF CALIFORNIA RIVERSIDE Bio-Image Analysis for Understanding Plant Development and Mosquito Behaviors A Dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy (2016) (0)
- A Graph-Theoretic Approach to Compute Minimal Tiling Path from a Physical Map (2009) (0)
- Analysis of nucleosome positioning landscapes enables gene discovery in the human parasite Plasmodium (2015) (0)
- Functional and Economic Justification for Service Robotics in the Pharmaceutical Industry (2002) (0)
- Reference-agnostic representation and visualization of pan-genomes (2021) (0)
- Contig Assembly Of Gene-Containing BACs Of Barley (2007) (0)
- International Workshop on Data Mining in Bioinformatics (BIOKDD) 2007. Introduction. (2008) (0)
- 8th International Workshop on Data Mining in Bioinformatics (BIOKDD 2008) (2008) (0)
- Decoding The Nuclear Genome of The Human Pathogen Babesia duncani Shed Light on its Virulence, Drug Susceptibility and Evolution among Apicomplexa (2022) (0)
- University of Groningen Construction of a map-based reference genome sequence for barley , Hordeum vulgare (2017) (0)
- A Drug Repurposing Approach Reveals Targetable Epigenetic Pathways in Plasmodium vivax Hypnozoites (2023) (0)
- On the Prediction of non-CG DNA Methylation (2022) (0)
- Summary: Repetitive Dna Detection and Classification 3 Discussion (2006) (0)
- Jukuri, open repository of the Natural Resources Institute Finland (Luke) (2019) (0)
- Comprehensive benchmarking and ensemble approaches for metagenomic classifiers (2017) (0)
- MDL-based time series clustering (2012) (0)
- Foreword: Special issue in honor of the 60th Birthday of Professor Alberto Apostolico: Work is for people who do not know how to: SAIL - String Algorithms, Information and Learning (2008) (0)
- A comparative evaluation of genome assembly reconciliation tools (2017) (0)
- Faculty Opinions recommendation of Deep learning improves prediction of CRISPR-Cpf1 guide RNA activity. (2018) (0)
- [HPLC: proposals for good laboratory practices]. (1980) (0)
- Analysis of nucleosome positioning landscapes enables gene discovery in the human malaria parasite Plasmodium falciparum (2015) (0)
- Figures and Tables to : DNA ‐ encoded nucleosome occupancy regulates transcription levels in the human malaria parasite Plasmodium falciparum (2014) (0)
- Correction to: Comprehensive benchmarking and ensemble approaches for metagenomic classifiers (2019) (0)
- Coupling ESTs, SNPs, BACs, Mapping Populations, Flow-Sorting And Synteny To Access The Barley Genome (2009) (0)
- malaria parasite Nucleosome landscape and control of transcription in the human Material Supplemental (2010) (0)
This paper list is powered by the following services:
Other Resources About Stefano Lonardi
What Schools Are Affiliated With Stefano Lonardi?
Stefano Lonardi is affiliated with the following schools:
