Stephan Beck
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Biology
Stephan Beck's Degrees
- Masters Bioinformatics Imperial College London
- Bachelors Biology University of Oxford
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(Suggest an Edit or Addition)Stephan Beck's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Initial sequencing and analysis of the human genome. (2001) (15222)
- Initial sequencing and comparative analysis of the mouse genome. (2002) (4609)
- Analysis of the protein-coding content of the sequence of human cytomegalovirus strain AD169. (1990) (1341)
- DNA methylation profiling of human chromosomes 6, 20 and 22 (2006) (1334)
- A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data (2012) (1178)
- Epigenome-wide association studies for common human diseases (2011) (1163)
- The DNA sequence of human chromosome 22 (1999) (1117)
- The DNA sequence of the human X chromosome (2005) (1072)
- Gene map of the extended human MHC (2004) (1036)
- The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease (2016) (885)
- Complete sequence and gene map of a human major histocompatibility complex (1999) (805)
- Age-dependent DNA methylation of genes that are suppressed in stem cells is a hallmark of cancer. (2010) (788)
- A high-resolution HLA and SNP haplotype map for disease association studies in the extended human MHC (2006) (764)
- Sequences encoded in the class II region of the MHC related to the 'ABC' superfamily of transporters (1990) (710)
- Plasticity in the organization and sequences of human KIR/ILT gene families. (2000) (665)
- ChAMP: 450k Chip Analysis Methylation Pipeline (2014) (649)
- A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis (2008) (647)
- The chicken B locus is a minimal essential major histocompatibility complex (1999) (614)
- DNA sequence and analysis of human chromosome 9 (2003) (548)
- Neoantigen-directed immune escape in lung cancer evolution (2019) (504)
- Human cytomegalovirus encodes a glycoprotein homologous to MHC class-I antigens (1988) (483)
- Large-scale chromatin organization of the major histocompatibility complex and other regions of human chromosome 6 and its response to interferon in interphase nuclei. (2000) (477)
- Genetic Drivers of Epigenetic and Transcriptional Variation in Human Immune Cells (2016) (475)
- A proteasome-related gene between the two ABC transporter loci in the class II region of the human MHC (1991) (416)
- ChAMP: updated methylation analysis pipeline for Illumina BeadChips (2017) (405)
- An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs). (2008) (399)
- DNA methylation aging clocks: challenges and recommendations (2019) (393)
- Downregulation of Death-Associated Protein Kinase 1 (DAPK1) in Chronic Lymphocytic Leukemia (2007) (391)
- DNA Methylation Profiling of the Human Major Histocompatibility Complex: A Pilot Study for the Human Epigenome Project (2004) (364)
- The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery (2016) (360)
- Second proteasome-related gene in the human MHC class II region (1991) (349)
- The DNA sequence of the human cytomegalovirus genome. (1991) (341)
- The DNA Methylome of Human Peripheral Blood Mononuclear Cells (2010) (326)
- Germline rates of de novo meiotic deletions and duplications causing several genomic disorders (2008) (326)
- An Epigenetic Signature in Peripheral Blood Predicts Active Ovarian Cancer (2009) (322)
- Single base–resolution methylome of the silkworm reveals a sparse epigenomic map (2010) (322)
- BLUEPRINT to decode the epigenetic signature written in blood (2012) (320)
- The genomic context of natural killer receptor extended gene families (2001) (317)
- Identification of Type 1 Diabetes–Associated DNA Methylation Variable Positions That Precede Disease Diagnosis (2010) (313)
- Variation analysis and gene annotation of eight MHC haplotypes: The MHC Haplotype Project (2008) (309)
- Complete MHC haplotype sequencing for common disease gene mapping. (2004) (286)
- The DNA sequence and comparative analysis of human chromosome 20 (2004) (280)
- The methylome: approaches for global DNA methylation profiling. (2008) (271)
- Genome-wide DNA methylation analysis for diabetic nephropathy in type 1 diabetes mellitus (2010) (268)
- The DNA sequence and analysis of human chromosome 6 (2003) (266)
- A complex between the MHC class I homologue encoded by human cytomegalovirus and β2 microglobulin (1990) (261)
- Genetic and environmental influences interact with age and sex in shaping the human methylome (2016) (260)
- Methylome analysis using MeDIP-seq with low DNA concentrations (2012) (258)
- Coordinate regulation of the human TAP1 and LMP2 genes from a shared bidirectional promoter (1995) (257)
- Integrated Genetic and Epigenetic Analysis Identifies Haplotype-Specific Methylation in the FTO Type 2 Diabetes and Obesity Susceptibility Locus (2010) (254)
- Quantitative comparison of DNA methylation assays for biomarker development and clinical applications (2016) (251)
- Age-associated epigenetic drift: implications, and a case of epigenetic thrift? (2013) (250)
- A high-resolution linkage-disequilibrium map of the human major histocompatibility complex and first generation of tag single-nucleotide polymorphisms. (2005) (248)
- Molecular dissection of colorectal cancer in pre-clinical models identifies biomarkers predicting sensitivity to EGFR inhibitors (2017) (235)
- Placenta-specific Methylation of the Vitamin D 24-Hydroxylase Gene (2009) (222)
- From profiles to function in epigenomics (2016) (209)
- A comparison of reference-based algorithms for correcting cell-type heterogeneity in Epigenome-Wide Association Studies (2017) (208)
- Moving AHEAD with an international human epigenome project (2008) (202)
- Targeted next-generation sequencing of head and neck squamous cell carcinoma identifies novel genetic alterations in HPV+ and HPV- tumors (2013) (195)
- Dynamic Consent: a potential solution to some of the challenges of modern biomedical research (2017) (186)
- Polymorphism in a second ABC transporter gene located within the class II region of the human major histocompatibility complex. (1992) (185)
- The human major histocompatability complex: lessons from the DNA sequence. (2000) (183)
- From genome to epigenome. (2005) (182)
- A second major histocompatibility complex susceptibility locus for multiple sclerosis (2007) (181)
- A cluster of ten novel MHC class I related genes on human chromosome 6q24.2-q25.3. (2002) (172)
- The DNA sequence and biological annotation of human chromosome 1 (2006) (166)
- Genetic Analysis of Completely Sequenced Disease-Associated MHC Haplotypes Identifies Shuffling of Segments in Recent Human History (2006) (162)
- Gene organisation determines evolution of function in the chicken MHC (1999) (161)
- Meta-analysis of IDH-mutant cancers identifies EBF1 as an interaction partner for TET2 (2013) (159)
- The human TREM gene cluster at 6p21.1 encodes both activating and inhibitory single IgV domain receptors and includes NKp44 (2003) (151)
- Correlation of an epigenetic mitotic clock with cancer risk (2016) (151)
- Characterization of recombination in the HLA class II region. (1997) (150)
- Epigenomics: genome-wide study of methylation phenomena. (2002) (147)
- Prognostic Impact of Novel Molecular Subtypes of Small Intestinal Neuroendocrine Tumor (2015) (144)
- The cluster of BTN genes in the extended major histocompatibility complex. (2001) (144)
- Genome-wide age-related changes in DNA methylation and gene expression in human PBMCs (2014) (142)
- Deciphering the genomic, epigenomic, and transcriptomic landscapes of pre-invasive lung cancer lesions (2019) (137)
- Somatically acquired hypomethylation of IGF2 in breast and colorectal cancer (2008) (135)
- Arginine Deprivation With Pegylated Arginine Deiminase in Patients With Argininosuccinate Synthetase 1–Deficient Malignant Pleural Mesothelioma: A Randomized Clinical Trial (2017) (134)
- Differential methylation of the TRPA1 promoter in pain sensitivity (2014) (133)
- Inflammatory signalling as mediator of epigenetic modulation in tissue-specific chronic inflammation. (2009) (132)
- An Integrative Multi-scale Analysis of the Dynamic DNA Methylation Landscape in Aging (2015) (131)
- Comparative sequence analysis of the human and pufferfish Huntington's disease genes (1995) (130)
- The DNA sequence and biological annotation of human chromosome 1 (2006) (127)
- Single haplotype analysis demonstrates rapid evolution of the killer immunoglobulin-like receptor (KIR) loci in primates. (2005) (126)
- A functional methylome map of ulcerative colitis (2012) (126)
- Widespread resetting of DNA methylation in glioblastoma-initiating cells suppresses malignant cellular behavior in a lineage-dependent manner. (2013) (123)
- The genomic sequence and analysis of the swine major histocompatibility complex. (2006) (122)
- Sites of differential DNA methylation between placenta and peripheral blood: molecular markers for noninvasive prenatal diagnosis of aneuploidies. (2009) (119)
- Identification and functional validation of HPV-mediated hypermethylation in head and neck squamous cell carcinoma (2013) (119)
- Increased DNA methylation variability in type 1 diabetes across three immune effector cell types (2016) (118)
- Analysis pipelines and packages for Infinium HumanMethylation450 BeadChip (450k) data (2015) (116)
- Comparative methylome analysis of benign and malignant peripheral nerve sheath tumors. (2011) (114)
- Identification of differentially methylated cell-types in Epigenome-Wide Association Studies (2018) (114)
- Glioblastomas acquire myeloid-affiliated transcriptional programs via epigenetic immunoediting to elicit immune evasion (2021) (111)
- Using high-density DNA methylation arrays to profile copy number alterations (2014) (111)
- Interplay between whole-genome doubling and the accumulation of deleterious alterations in cancer evolution (2020) (109)
- A histone acetylome-wide association study of Alzheimer’s disease identifies disease-associated H3K27ac differences in the entorhinal cortex (2018) (107)
- Erratum: Initial sequencing and analysis of the human genome: International Human Genome Sequencing Consortium (Nature (2001) 409 (860-921)) (2001) (106)
- A Common Variant Associated with Dyslexia Reduces Expression of the KIAA0319 Gene (2009) (101)
- Genome-wide DNA methylation analysis of archival formalin-fixed paraffin-embedded tissue using the Illumina Infinium HumanMethylation27 BeadChip. (2010) (100)
- Probe Lasso: A novel method to rope in differentially methylated regions with 450K DNA methylation data (2015) (98)
- Glioblastoma Stem Cells Respond to Differentiation Cues but Fail to Undergo Commitment and Terminal Cell-Cycle Arrest (2015) (98)
- Comparative Genomic Analysis of Two Avian (Quail and Chicken) MHC Regions12 (2004) (98)
- RPS6KA2, a putative tumour suppressor gene at 6q27 in sporadic epithelial ovarian cancer (2007) (97)
- Taking the measure of the methylome (2010) (95)
- Integration of human pancreatic islet genomic data refines regulatory mechanisms at Type 2 Diabetes susceptibility loci (2017) (94)
- Epigenetic variation and inheritance in mammals. (2006) (94)
- DNA Methylation-mediated Down-regulation of DNA Methyltransferase-1 (DNMT1) Is Coincident with, but Not Essential for, Global Hypomethylation in Human Placenta (2010) (93)
- Specific tumour-associated methylation in normal human term placenta and first-trimester cytotrophoblasts. (2008) (92)
- An integrative network algorithm identifies age-associated differential methylation interactome hotspots targeting stem-cell differentiation pathways (2013) (89)
- The major and a minor class II β-chain (B-LB ) gene flank the Tapasin gene in the B-F /B-L region of the chicken major histocompatibility complex (2000) (89)
- Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types (2016) (88)
- oxBS-450K: A method for analysing hydroxymethylation using 450K BeadChips (2015) (87)
- A novel cell-type deconvolution algorithm reveals substantial contamination by immune cells in saliva, buccal and cervix. (2018) (86)
- eFORGE: A Tool for Identifying Cell Type-Specific Signal in Epigenomic Data (2016) (86)
- A homologue of the Drosophila female sterile homeotic (fsh) gene in the class II region of the human MHC. (1992) (84)
- Different Evolutionary Histories of the Two Classical Class I Genes BF1 and BF2 Illustrate Drift and Selection within the Stable MHC Haplotypes of Chickens1 (2007) (84)
- Characterization of the Chicken C-Type Lectin-Like Receptors B-NK and B-lec Suggests That the NK Complex and the MHC Share a Common Ancestral Region1 (2005) (81)
- BTL-II : a polymorphic locus with homology to the butyrophilin gene family, located at the border of the major histocompatibility complex class II and class III regions in human and mouse (2000) (81)
- UroMark—a urinary biomarker assay for the detection of bladder cancer (2017) (79)
- From genomics to epigenomics: a loftier view of life (1999) (79)
- Evolutionary dynamics of non-coding sequences within the class II region of the human MHC. (1996) (78)
- A genome-wide survey of Major Histocompatibility Complex (MHC) genes and their paralogues in zebrafish (2005) (78)
- The DNA sequence and analysis of human chromosome 13 (2004) (75)
- Characterization of clustered MHC-linked olfactory receptor genes in human and mouse. (2001) (75)
- MHC-linked olfactory receptor loci exhibit polymorphism and contribute to extended HLA/OR-haplotypes. (2000) (74)
- The Leukocyte Receptor Complex in Chicken Is Characterized by Massive Expansion and Diversification of Immunoglobulin-Like Loci (2006) (74)
- Sequence organisation of the class II region of the human MHC (1999) (74)
- Advances in epigenome-wide association studies for common diseases (2014) (74)
- Small GTPase Rac1: structure, localization, and expression of the human gene. (2000) (73)
- Making multi-omics data accessible to researchers (2019) (71)
- Evolution and comparative analysis of the MHC Class III inflammatory region (2006) (69)
- Determinants of anti-PD-1 response and resistance in clear cell renal cell carcinoma (2021) (68)
- Functional Regulatory T Cells Produced by Inhibiting Cyclic Nucleotide Phosphodiesterase Type 3 Prevent Allograft Rejection (2011) (67)
- A Novel System of Polymorphic and Diverse NK Cell Receptors in Primates (2009) (67)
- Applying whole-genome studies of epigenetic regulation to study human disease (2006) (66)
- Genome-wide methylation profiling identifies novel methylated genes in neuroblastoma tumors (2016) (65)
- Functional variation in allelic methylomes underscores a strong genetic contribution and reveals novel epigenetic alterations in the human epigenome (2017) (65)
- The DNA sequence and comparative analysis of human chromosome 10 (2004) (65)
- The epigenomic interface between genome and environment in common complex diseases. (2010) (65)
- Epigenome-Wide Association Study of Incident Type 2 Diabetes in a British Population: EPIC-Norfolk Study (2019) (63)
- Identification of the ancestral killer immunoglobulin-like receptor gene in primates (2006) (63)
- The MHC haplotype project: a resource for HLA-linked association studies. (2002) (63)
- Gene organisation, sequence variation and isochore structure at the centromeric boundary of the human MHC. (1999) (62)
- Tracking the Epigenetic Clock Across the Human Life Course: A Meta-analysis of Longitudinal Cohort Data (2018) (62)
- Epigenetic and Transcriptional Variability Shape Phenotypic Plasticity (2018) (61)
- Analysis of the Polycomb-related lncRNAs HOTAIR and ANRIL in bladder cancer (2015) (59)
- Large-scale sequence comparisons reveal unusually high levels of variation in the HLA-DQB1 locus in the class II region of the human MHC. (1998) (59)
- TAPASIN, DAXX, RGL2, HKE2 and four new genes (BING 1, 3 to 5) form a dense cluster at the centromeric end of the MHC. (1998) (57)
- Increased DNA methylation variability in rheumatoid arthritis-discordant monozygotic twins (2018) (57)
- eFORGE v2.0: updated analysis of cell type-specific signal in epigenomic data (2019) (57)
- Future potential of the Human Epigenome Project (2004) (55)
- Functional interpretation of non-coding sequence variation: Concepts and challenges (2013) (54)
- Epigenetic influences on aging: a longitudinal genome-wide methylation study in old Swedish twins (2017) (54)
- Correcting for cell-type heterogeneity in epigenome-wide association studies: revisiting previous analyses (2017) (52)
- G protein‐coupled receptor GPR55 promotes colorectal cancer and has opposing effects to cannabinoid receptor 1 (2018) (51)
- The good, the bad and the ugly: Epigenetic mechanisms in glioblastoma (2013) (51)
- Accurate Measurement of 5-Methylcytosine and 5-Hydroxymethylcytosine in Human Cerebellum DNA by Oxidative Bisulfite on an Array (OxBS-Array) (2015) (51)
- MHC-linked and un-linked class I genes in the wallaby (2009) (51)
- The Dynamics of DNA Methylation Covariation Patterns in Carcinogenesis (2014) (51)
- AutoMeDIP-seq: A high-throughput, whole genome, DNA methylation assay (2010) (51)
- Epigenetic reprogramming of fallopian tube fimbriae in BRCA mutation carriers defines early ovarian cancer evolution (2016) (50)
- Cancer epigenome. (2010) (50)
- Epigenetics Markers of Metastasis and HPV-Induced Tumorigenesis in Penile Cancer (2014) (49)
- Validation of the MethylationEPIC BeadChip for fresh-frozen and formalin-fixed paraffin-embedded tumours (2017) (47)
- Epigenetic dysregulation and poorer prognosis in DAXX-deficient pancreatic neuroendocrine tumours (2015) (47)
- CSN1 Somatic Mutations in Penile Squamous Cell Carcinoma. (2016) (46)
- A Polycomb-mir200 loop regulates clinical outcome in bladder cancer (2015) (45)
- Selfish mutations dysregulating RAS-MAPK signaling are pervasive in aged human testes (2018) (45)
- Genomic organization of HLA-DMA and HLA-DMB. Comparison of the gene organization of all six class II families in the human major histocompatibility complex. (1994) (45)
- Resources for methylome analysis suitable for gene knockout studies of potential epigenome modifiers (2012) (44)
- Chicken TAP genes differ from their human orthologues in locus organisation, size, sequence features and polymorphism (2005) (42)
- The genomic structure and promoter region of the human parkin gene. (2001) (42)
- Tissue-independent and tissue-specific patterns of DNA methylation alteration in cancer (2016) (39)
- Advances in the identification and analysis of allele-specific expression (2009) (39)
- Future impact of integrated high-throughput methylome analyses on human health and disease. (2008) (39)
- Systematic evaluation of library preparation methods and sequencing platforms for high-throughput whole genome bisulfite sequencing (2019) (39)
- Comparative methylome analysis identifies new tumour subtypes and biomarkers for transformation of nephrogenic rests into Wilms tumour (2015) (38)
- Co-duplication of olfactory receptor and MHC class I genes in the mouse major histocompatibility complex. (2003) (38)
- Progressive epigenetic dysregulation in neuroendocrine tumour liver metastases. (2017) (37)
- DNA methylation analysis of murine hematopoietic side population cells during aging (2013) (37)
- Molecular Signatures of Regression of the Canine Transmissible Venereal Tumor (2018) (37)
- Identification of a single killer immunoglobulin-like receptor (KIR) gene in the porcine leukocyte receptor complex on chromosome 6q (2006) (37)
- Chromosomal localization, gene structure and transcription pattern of the ORFX gene, a homologue of the MHC-linked RING3 gene. (1997) (37)
- Complex Transcription and Splicing of Odorant Receptor Genes* (2003) (36)
- Information recovery from low coverage whole-genome bisulfite sequencing (2016) (36)
- Recruitment of Heterogeneous Nuclear Ribonucleoprotein A1in Vivo to the LMP/TAP Region of the Major Histocompatibility Complex* (2003) (36)
- Human-specific CpG “beacons” identify loci associated with human-specific traits and disease (2012) (35)
- The tammar wallaby major histocompatibility complex shows evidence of past genomic instability (2011) (34)
- Non-CG DNA methylation is a biomarker for assessing endodermal differentiation capacity in pluripotent stem cells (2016) (34)
- Sequence of a Complete Chicken BG Haplotype Shows Dynamic Expansion and Contraction of Two Gene Lineages with Particular Expression Patterns (2014) (33)
- EPISCORE: cell type deconvolution of bulk tissue DNA methylomes from single-cell RNA-Seq data (2020) (31)
- Integrated virus-host methylome analysis in head and neck squamous cell carcinoma (2013) (30)
- Generation of a genomic tiling array of the human Major Histocompatibility Complex (MHC) and its application for DNA methylation analysis (2008) (30)
- Methylome analysis identifies a Wilms tumor epigenetic biomarker detectable in blood (2014) (30)
- Genome-Wide Screen for Differential DNA Methylation Associated with Neural Cell Differentiation in Mouse (2011) (30)
- Reconfiguration of genomic anchors upon transcriptional activation of the human major histocompatibility complex. (2008) (29)
- Assessment of RainDrop BS-seq as a method for large-scale, targeted bisulfite sequencing (2014) (29)
- Genomic structure and domain organisation of the human Bak gene. (1998) (28)
- Epigenome-wide association studies for cancer biomarker discovery in circulating cell-free DNA: technical advances and challenges. (2017) (28)
- Mucosal Transcriptomics Implicates Under Expression of BRINP3 in the Pathogenesis of Ulcerative Colitis (2014) (27)
- DNA methylome analysis reveals distinct epigenetic patterns of ascending aortic dissection and bicuspid aortic valve (2017) (27)
- Polymorphisms in olfactory receptor genes: a cautionary note. (2000) (27)
- Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics (2014) (26)
- The multi-omic landscape of transcription factor inactivation in cancer (2016) (26)
- Brave new epigenomes: the dawn of epigenetic engineering (2015) (26)
- Corrigendum: Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs (2010) (26)
- Saturation analysis for whole-genome bisulfite sequencing data (2016) (26)
- The Epigenome: Molecular Hide and Seek (2003) (25)
- Registered access: authorizing data access (2018) (25)
- Physical and transcript map of the region between D6S264 and D6S149 on chromosome 6q27, the minimal region of allele loss in sporadic epithelial ovarian cancer (2002) (24)
- Global hypomethylation in myeloma is associated with poor prognosis (2016) (24)
- A blueprint for an international cancer epigenome consortium. A report from the AACR Cancer Epigenome Task Force. (2012) (23)
- Points-to-consider on the return of results in epigenetic research (2019) (23)
- Overexpression of the Heterochromatinization Factor BAHD1 in HEK293 Cells Differentially Reshapes the DNA Methylome on Autosomes and X Chromosome (2015) (21)
- Human-specific epigenetic variation in the immunological Leukotriene B4 Receptor (LTB4R/BLT1) implicated in common inflammatory diseases (2014) (21)
- Correction to: Functional variation in allelic methylomes underscores a strong genetic contribution and reveals novel epigenetic alterations in the human epigenome (2017) (21)
- Editor's note on Zheng et al. and Rahmani et al. (2017) (21)
- EpiDISH web server: Epigenetic Dissection of Intra-Sample-Heterogeneity with online GUI (2019) (21)
- Sequencing and comparative analysis of the gorilla MHC genomic sequence (2013) (21)
- Comments on: Interpretation of genome-wide infinium methylation data from ligated DNA in formalin-fixed paraffin-embedded paired tumor and normal tissue (2012) (20)
- Personal Genome Project UK (PGP-UK): a research and citizen science hybrid project in support of personalized medicine (2018) (20)
- Epigenome data release: a participant-centered approach to privacy protection (2015) (19)
- Differentiation therapy for glioblastoma – too many obstacles? (2015) (19)
- The Personal Genome Project-UK, an open access resource of human multi-omics data (2019) (18)
- The DNA sequence and biological annotation of human chromosome 1 (vol 441, pg 315, 2006) (2006) (18)
- Evolutionary vignettes of natural killer cell receptors. (2007) (18)
- Suffocating cancer: hypoxia-associated epimutations as targets for cancer therapy (2011) (18)
- Gene body methylation of the dimethylarginine dimethylamino-hydrolase 2 (Ddah2) gene is an epigenetic biomarker for neural stem cell differentiation (2009) (18)
- CORALINA: a universal method for the generation of gRNA libraries for CRISPR-based screening (2016) (17)
- Phylogeny and structure of theRING3 gene (2007) (17)
- Polymorphic olfactory receptor genes and HLA loci constitute extended haplotypes (2000) (17)
- Replication of the association of HLA-B7 with Alzheimer's disease: a role for homozygosity? (2006) (17)
- High levels of genetic variation at MHC class II DBB loci in the tammar wallaby (Macropus eugenii) (2009) (17)
- Chemotherapy induces canalization of cell state in childhood B-cell precursor acute lymphoblastic leukemia (2021) (16)
- The human homologue of unc-93 maps to chromosome 6q27 – characterisation and analysis in sporadic epithelial ovarian cancer (2002) (15)
- Neuronal methylome reveals CREB-associated neuro-axonal impairment in multiple sclerosis (2019) (15)
- Genome-scale DNA sequencing: where are we? (1998) (15)
- C2c: turning cancer into chronic disease (2014) (15)
- The role of epigenetics in psychological resilience. (2021) (15)
- The epigenetic clock: a molecular crystal ball for human aging? (2019) (15)
- Association of smoking behavior with an odorant receptor allele telomeric to the human major histocompatibility complex. (2008) (14)
- DNA Methylome Alterations are Associated with Airway Macrophage Differentiation and Phenotype During Lung Fibrosis. (2021) (14)
- DNA methylation‐based profiling of bone and soft tissue tumours: a validation study of the ‘DKFZ Sarcoma Classifier’ (2021) (14)
- Quantification of tumour evolution and heterogeneity via Bayesian epiallele detection (2017) (14)
- Increased DNA methylation variability in rheumatoid arthritis-discordant monozygotic twins (2018) (13)
- MHCDB: database of the human MHC (release 2) (1996) (13)
- A pan-tissue DNA methylation atlas enables in silico decomposition of human tissue methylomes at cell-type resolution (2022) (13)
- Epigenome-wide association study of kidney function identifies trans-ethnic and ethnic-specific loci (2021) (12)
- Molecular signature of response to preoperative radiotherapy in locally advanced breast cancer (2018) (12)
- Construction of a high-resolution 2.5-Mb transcript map of the human 6p21.2-6p21.3 region immediately centromeric of the major histocompatibility complex. (2000) (12)
- 3-methylcytosine in cancer: an underappreciated methyl lesion? (2016) (11)
- An HCMV reading frame which has similarity with both the V and C regions of the TCR gamma chain. (1991) (11)
- Epigenetic noise fuels cancer evolution. (2014) (11)
- Genomic organization of the HSET locus and the possible association of HLA-linked genes with immotile cilia syndrome (ICS) (1999) (10)
- The LRC haplotype project: a resource for killer immunoglobulin-like receptor-linked association studies. (2006) (10)
- Alopecia areata susceptibility variant in MHC region impacts expressions of genes contributing to hair keratinization and is involved in hair loss (2020) (10)
- Benefits and barriers in the design of harmonized access agreements for international data sharing (2019) (10)
- Detection of polymorphism in the RING3 gene by high-throughput fluorescent SSCP analysis (1999) (9)
- Preview. A shore sign of reprogramming. (2009) (9)
- DNA sequence and structure of the mouse RING3 gene: identification of variant RING3 transcripts (1998) (9)
- DNA sequence of the leftward junction in the adenovirus-simian virus 40 hybrid Ad2+D2 and determination of the structure of the D2-T antigen (1985) (9)
- The chromosome 6 sequencing project at the Sanger Centre. (1997) (9)
- Analysis of the genomic region containing the tammar wallaby (Macropus eugenii) orthologues of MHC class III genes (2005) (9)
- Potential (mis)use of epigenetic age estimators by private companies and public agencies: human rights law should provide ethical guidance (2019) (9)
- Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations (2022) (8)
- Isolation and characterization of 10 MHC Class I‐associated microsatellite loci in tammar wallaby (Macropus eugenii) (2009) (8)
- MHCDB — database of the human MHC (1994) (8)
- A Photo‐responsive Small‐Molecule Approach for the Opto‐epigenetic Modulation of DNA Methylation (2019) (8)
- A donor-specific epigenetic classifier for acute graft-versus-host disease severity in hematopoietic stem cell transplantation (2015) (7)
- Immunogenomics: Molecular hide and seek (2006) (7)
- Replication Timing Profile Reflects the Distinct Functional and Genomic Features of the MHC Class II Region (2007) (6)
- “Epigenome-wide methylation profile of chronic kidney disease-derived arterial DNA uncovers novel pathways in disease-associated cardiovascular pathology.” (2020) (6)
- Accuracy of DNA sequencing: should the sequence quality be monitored? (1993) (6)
- Computational Analysis and Integration of MeDIP-seq Methylome Data (2016) (6)
- Human-specific CpG 'beacons' identify human-specific prefrontal cortex H3K4me3 chromatin peaks. (2014) (6)
- The Chromosome 6 database at the Sanger Centre. (1997) (5)
- The Human Genome Project: what we have learnt about the MHC region on chromosome 6 and its potential to Behçet's disease. (2003) (5)
- Calling differential DNA methylation at cell-type resolution: an objective status-quo (2019) (5)
- A histone acetylome-wide association study of Alzheimer’s disease: neuropathology-associated regulatory variation in the human entorhinal cortex (2017) (5)
- Novel epigenetic network biomarkers for early detection of esophageal cancer (2022) (5)
- DNA sequencing of the MHC class II region and the chromosome 6 sequencing effort at the Sanger Centre. (1996) (5)
- A CellAgeClock for expedited discovery of anti-ageing compounds (2019) (4)
- Divergent intron arrangement in theMB1/LMP7 proteasome gene pair (1996) (4)
- Osteosarcoma: novel prognostic biomarkers using circulating and cell-free tumour DNA (2021) (4)
- The missing diversity in human epigenomic studies (2022) (4)
- Diversity in EWAS: current state, challenges, and solutions (2022) (4)
- Epigenetic variation taking center stage in immunological research. (2017) (4)
- stem cells is a hallmark of cancer Age-dependent DNA methylation of genes that are suppressed in Material Supplemental (2010) (4)
- Comparative analysis of neutrophil and monocyte epigenomes (2017) (3)
- DNA methylation oscillation defines classes of enhancers (2018) (3)
- Organisation and functions of class II genes and molecules. (1996) (3)
- GenomeChronicler: The Personal Genome Project UK Genomic Report Generator Pipeline (2020) (3)
- Getting up close and personal with UK genomics and beyond (2018) (3)
- The Relationship between Epigenetic Age and Myocardial Infarction/Acute Coronary Syndrome in a Population-Based Nested Case-Control Study (2022) (3)
- RXRB Is an MHC-Encoded Susceptibility Gene Associated with Anti-Topoisomerase I Antibody-Positive Systemic Sclerosis. (2017) (3)
- Auditing the Editor: A Review of Key Translational Issues in Epigenetic Editing. (2022) (3)
- Publisher Correction: Pulmonary venous circulating tumor cell dissemination before tumor resection and disease relapse (2020) (3)
- The major and a minor class II b-chain ( BLB ) gene flank the Tapasin gene in the BF / BL region of the chicken major histocompatibility complex (3)
- A-Z of methylome analysis. (2010) (3)
- Copy number-aware deconvolution of tumor-normal DNA methylation profiles (2020) (2)
- Comparison and imputation-aided integration of five commercial platforms for targeted DNA methylome analysis (2022) (2)
- Immunogenomics: towards a digital immune system. (2003) (2)
- Epigenome data release: a participant-centered approach to privacy protection (2015) (2)
- Allele-informed copy number evaluation of plasma DNA samples from metastatic prostate cancer patients: the PCF_SELECT consortium assay (2022) (2)
- Cell-free DNA: Treasure trove for cancer medicine. (2017) (2)
- Publisher Correction: Spatial heterogeneity of the T cell receptor repertoire reflects the mutational landscape in lung cancer (2020) (2)
- Third single chromosome 6 workshop: meeting report. (1997) (2)
- Genome acrobatics: understanding complex genomes. (2001) (2)
- Erratum to: Brave new epigenomes: the dawn of epigenetic engineering (2015) (1)
- Faculty Opinions recommendation of Requirement of bic/microRNA-155 for normal immune function. (2007) (1)
- Epigenetics of Inflammatory Bowel Disease (2013) (1)
- 51 Epigenetic alterations associated with neo-adjuvant chemotherapy resistance in bladder cancer (2013) (1)
- 702 Epigenomics of penile squamous cell carcinoma (2015) (1)
- Resolution-dependent methylome feature analysis of whole-genome bisulfite sequencing data (2016) (1)
- The Human Epigenome Project: Past, Present, and Future (2014) (1)
- Genome-wide DNA methylation profiling of gastrointestinal neuroendocrine tumors to identify hypermethylation of mTOR, Wnt, and Notch pathways in GI NET pathogenesis (2014) (1)
- ORGANIZATION AND FUNCTIONS OF THE CLASS-II REGION OF THE HUMAN MHC (1994) (1)
- Sequences encoded in the class II region of the MHC related to the 'ABC' superfamily of transporters. 1990. (2008) (1)
- Nano-MeDIP-seq Methylome Analysis Using Low DNA Concentrations. (2015) (1)
- 240 Distinct patterns of copy number aberrations in penile cancer (2016) (1)
- Performance comparison and in-silico harmonisation of commercial platforms for DNA methylome analysis by targeted bisulfite sequencing (2021) (1)
- Opto‐epigenetic modulation of DNA methylation with a photo‐responsive small‐molecule approach (2019) (1)
- Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics (2014) (1)
- Comments on: Interpretation of genome-wide infinium methylation data from ligated DNA in formalin-fixed paraffin-embedded paired tumor and normal tissue (2012) (1)
- C2c: turning cancer into chronic disease (2014) (1)
- Deciphering the genomic, epigenomic, and transcriptomic landscapes of pre-invasive lung cancer lesions (2019) (1)
- DNA Sequence oftheLeftward Junction intheAdenovirus-Simian Virus 40Hybrid Ad2+D2andDetermination oftheStructure ofthe D2-TAntigen (1985) (0)
- Epigenetic alterations underlie airway macrophage differentiation and phenotype during lung fibrosis (2020) (0)
- Sequence Accuracy and Verification (2005) (0)
- Epigenetics - The missing link between genetics, disease and the environment (2006) (0)
- Coevolution in the chicken MHC: Polymorphic taps and shallow grooves (2001) (0)
- Epigenetic Drivers of Penile Squamous Cell Carcinoma Development (2014) (0)
- Methylome Analysis of HPV-Associated Head and Neck Cancer (2011) (0)
- Molecular variety club: (Epi)genetic resources for MHC/LRC-linked disease and evolution (2005) (0)
- TOWARDS SEQUENCING THE HUMAN MHC (1996) (0)
- Faculty Opinions recommendation of An integrated semiconductor device enabling non-optical genome sequencing. (2011) (0)
- A novel system of polymorphic NK cell receptors identified in primates (2009) (0)
- 1133OMOLECULAR PROFILING OF SMALL INTESTINAL NEUROENDOCRINE TUMOURS. (2014) (0)
- Calling differential DNA methylation at cell-type resolution: avoiding misconceptions and promoting best practices (2021) (0)
- The First Neuroendocrine Tumor Methylome Using Methylation-Specific Immunoprecipitation Followed by Second Generation Sequencing - MeDIP-seq (2012) (0)
- Faculty Opinions recommendation of The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores. (2009) (0)
- Multiregion sequencing of penile cancer to reveal distinct patterns of heterogeneous actionable mutations. (2017) (0)
- The Personal Genome Project-UK, an open access resource of human multi-omics data (2019) (0)
- LD relationship for FTO Association SNPs and rs7202116. (2010) (0)
- Registered access: authorizing data access (2018) (0)
- Large-Scale chromatin structure and function in the Major Histocompatibility Complex (2001) (0)
- Faculty Opinions recommendation of The human placenta methylome. (2013) (0)
- The generation of a sequence-ready contig encompassing the cervical tumor suppressor gene (TSG) on 6p23. (1999) (0)
- EpiCapture: Benchmarking commercially available targeted bisulfite-sequencing plafforms to gold-standard whole genome bisulfite sequencing (2016) (0)
- Correcting for cell-type heterogeneity in epigenome-wide association studies: premature analyses and conclusions (2017) (0)
- PO-342 Integrating copy number analysis and tumour DNA methylation profiling (2018) (0)
- Researcher perspectives on ethics considerations in epigenetics: an international survey (2022) (0)
- Faculty Opinions recommendation of Searching for signals of evolutionary selection in 168 genes related to immune function. (2006) (0)
- Report of the fourth international chromosome 6 workshop 1999 (2000) (0)
- Performance comparison and in-silico harmonization of commercial platforms for DNA methylome analysis by targeted bisulfite sequencing (2021) (0)
- Promoter Hypermethylation at RASSF1 is a Feature of Small Intestinal Neuroendocrine Tumors (2014) (0)
- Global Methylation Analysis of Cyclin D1vs D2 Dysregulated Primary Myeloma Samples (2014) (0)
- Share a Common Ancestral Region Suggests That the NK Complex and the MHC Lectin-Like Receptors BNK and B-lec Characterization of the Chicken C-Type (2005) (0)
- A donor-specific epigenetic classifier for acute graft-versus-host disease severity in hematopoietic stem cell transplantation (2015) (0)
- ANTIGEN-PROCESSING GENES IN THE HUMAN MHC (1994) (0)
- Dns-sequencing with use of chemiluminescence. (1990) (0)
- Epigenome-wide association study of kidney function identifies trans-ethnic and ethnic-specific loci (2021) (0)
- Faculty Opinions recommendation of Genome-scale CRISPR-Cas9 knockout screening in human cells. (2014) (0)
- Editorial: Personal Genomes: Accessing, Sharing, and Interpretation (2021) (0)
- Brave new epigenomes: the dawn of epigenetic engineering (2015) (0)
- Dr Nat Bumstead: Pioneer Researcher in Mapping the Chicken Genome (2004) (0)
- Testicular transcripts of HLA-linked olfactory receptor genes exhibit exon sharing and extensive long-distance alternative splicing (2002) (0)
- University of Birmingham UroMark-A urinary biomarker assay for the detection of bladder cancer (2017) (0)
- DNA Methylation as a Biomarker to predict Neoadjuvant Cisplatin-based Chemotherapy Resistance in Bladder Cancer (2013) (0)
- Genome-wide age-related changes in DNA methylation and gene expression in human PBMCs (2014) (0)
- Alopecia areata susceptibility variant identified by MHC risk haplotype sequencing reproduces symptomatic patched hair loss in mice (2018) (0)
- EPIGENETIC METHYLATION OF TYPE 1 DIABETES SUSCEPTIBILITY GENES (2005) (0)
- Molecular Profiling of Small Intestinal Neuroendocrine Tumours (SINETs) (2015) (0)
- FORGEdb: a tool for identifying candidate functional variants and uncovering target genes and mechanisms for complex diseases (2023) (0)
- Epigenetic deregulation of the Homoebox gene family in bladder cancer (2013) (0)
- Glioblastoma StemCells Respond to Differentiation Cues but Fail to Undergo Commitment and Terminal Cell-Cycle Arrest (2015) (0)
- Associations of alleles atloci located throughout the HLA complex (1996) (0)
- Comparative methylome analysis identifies new tumour subtypes and biomarkers for transformation of nephrogenic rests into Wilms tumour (2015) (0)
- Integrated Genome-Wide DNA Methylation and mRNA Expression Analysis of Pancreatic NETs Identifies Differential Activation of the Hypoxia Inducible Factor (HIF) Pathway between Low and Intermediate Grade Tumors (2011) (0)
- Symposium 7: Modern methods and trends in sequencing analysis (1990) (0)
- Characterization ofRecombination intheHLAClass 11Region (1997) (0)
- Publisher Correction: A clonal expression biomarker associates with lung cancer mortality (2020) (0)
- Genomic Mutations in Bladder Cancer (2014) (0)
- 17. Genes encoding the transporters associated with antigen processing in the chicken are situated between the classical MHC class I genes and are highly polymorphic (2002) (0)
- Accessing HLA sequencing data through the 6ace database. (2003) (0)
- A-Z of methylome analysis Introduction (2010) (0)
- DNA methylation aging clocks: challenges and recommendations (2019) (0)
- Faculty Opinions recommendation of Recent segmental duplications in the human genome. (2002) (0)
- Faculty Opinions recommendation of Evidence of en bloc duplication in vertebrate genomes. (2002) (0)
- Mapping recombination sites in the HLA class II region (1996) (0)
- 512 INPP4B knockdown confers cisplatin sensitivity in bladder cancer (2014) (0)
- Abstract 5710: Identification of convergent gene repression mechanisms through integrative genomic and DNA methylation analysis in TRACERx (2022) (0)
- Faculty Opinions recommendation of Large-scale sequencing of the CD33-related Siglec gene cluster in five mammalian species reveals rapid evolution by multiple mechanisms. (2004) (0)
- 1159P Individualized methylation-based dynamic analysis of cell-free DNA in postoperative monitoring of resected lung cancer (2021) (0)
- A proteaasome-related gene between the two ABC transporter loci in the class II region of the human MHC (1991) (0)
- Comparative analysis and evolution of the MHC class III region (2005) (0)
- Please note the following before checking your manuscript (2016) (0)
- Whole-Genome Identification and Functional Analysis of Type 1 Diabetes-Associated Epigenetic Variation (2010) (0)
- Genome-Wide DNA Methylation Profiling of Pancreatic Neuroendocrine Tumors Identifies Distinct Methylation Profiles and Differentially Methylated Gene Promoter Regions Associated with Low, Medium and High Grade Tumors (2010) (0)
- Abstract 4530: EpiCapture: Benchmarking commercially available targeted bisulfite-sequencing platforms to gold-standard whole genome bisulfite sequencing (2016) (0)
- Journal of Integrative Bioinformatics (2020) (0)
- Abstract B36: DNA methylation profiling describes Wilms tumor evolution from its precursor lesion (2013) (0)
- Points-to-consider on the return of results in epigenetic research (2019) (0)
- Getting up close and personal with UK genomics and beyond (2018) (0)
- Correction to: Functional variation in allelic methylomes underscores a strong genetic contribution and reveals novel epigenetic alterations in the human epigenome (2019) (0)
- The multi-omic landscape of transcription factor inactivation in cancer (2016) (0)
- Erratum to: Brave new epigenomes: the dawn of epigenetic engineering (2015) (0)
- Dynamic Consent: a potential solution to some of the challenges of modern biomedical research (2017) (0)
- Haplotypes revisited: Genetic and epigenetic variation of the MHC (2004) (0)
- Diversity in EWAS: current state, challenges, and solutions (2022) (0)
- A Bayesian framework for genome-wide inference of DNA methylation levels (2022) (0)
- GPR55 drives colorectal cancer (2017) (0)
- Faculty Opinions recommendation of Advancements and challenges in computational biology. (2015) (0)
- Methylomic analysis identifies the involvement of migration and adhesion genes in the ageing of primary haematopoietic stem cells (2013) (0)
- Faculty Opinions recommendation of Evolution of NK receptors: a single Ly49 and multiple KIR genes in the cow. (2003) (0)
- Haplotype-specific recombination shapes the genealogy of ancestral European haplotypes (2008) (0)
- Faculty Opinions recommendation of Genetic and epigenetic fine mapping of causal autoimmune disease variants. (2016) (0)
- The Mutational Landscape of Penile Squamous Cell Carcinoma (2014) (0)
- 293 UroMark - a highly multiplex biomarker for the detection of bladder cancer (2016) (0)
- 1032 Host-Environment Interactions Shape the Risk for Ulcerative Colitis: Results From a Twin Epigenome-Wide Association Study (2013) (0)
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What Schools Are Affiliated With Stephan Beck?
Stephan Beck is affiliated with the following schools:
