Sudhir Kumar
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Professor in Molecular Evolution and Computational Biology ORCID 0000-0002-9918-8212
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(Suggest an Edit or Addition)Sudhir Kumar's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. (2011) (39863)
- MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. (2013) (36769)
- MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. (2016) (32829)
- MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. (2007) (29050)
- MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms. (2018) (20227)
- MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment (2004) (12239)
- MEGA2: molecular evolutionary genetics analysis software (2001) (6300)
- Prospects for inferring very large phylogenies by using the neighbor-joining method. (2004) (4560)
- Molecular Evolution and Phylogenetics (2000) (3358)
- MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences (2008) (3327)
- MEGA11: Molecular Evolutionary Genetics Analysis Version 11 (2021) (2391)
- Evolution of genes and genomes on the Drosophila phylogeny (2007) (1992)
- Molecular Evolutionary Genetics Analysis (2007) (1926)
- A molecular timescale for vertebrate evolution (1998) (1910)
- TimeTree: A Resource for Timelines, Timetrees, and Divergence Times. (2017) (1689)
- Evolutionary Genetics Analysis Version 6 . 0 (2013) (1557)
- MEGA: Molecular Evolutionary Genetics Analysis, Version 1.02. (1995) (1145)
- TimeTree: a public knowledge-base of divergence times among organisms (2006) (1109)
- MEGA: Molecular Evolutionary Genetics Analysis software for microcomputers (1994) (1029)
- Tree of Life Reveals Clock-Like Speciation and Diversification (2014) (835)
- Molecular Evolutionary Genetics Analysis (MEGA) for macOS. (2020) (799)
- Comparative Genomics in Eukaryotes (2005) (651)
- Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks. (2003) (591)
- Mutation rates in mammalian genomes (2002) (556)
- Continental breakup and the ordinal diversification of birds and mammals (1996) (507)
- The timetree of life (2009) (496)
- Estimating divergence times in large molecular phylogenies (2012) (483)
- Divergence time estimates for the early history of animal phyla and the origin of plants, animals and fungi (1999) (434)
- Inferring species phylogenies from multiple genes: concatenated sequence tree versus consensus gene tree. (2005) (417)
- Molecular clocks: four decades of evolution (2005) (340)
- Incomplete taxon sampling is not a problem for phylogenetic inference (2001) (306)
- Constraint and turnover in sex-biased gene expression in the genus Drosophila (2007) (284)
- MEGA-CC: computing core of molecular evolutionary genetics analysis program for automated and iterative data analysis (2012) (278)
- Genomic clocks and evolutionary timescales. (2003) (273)
- Evolutionary distance estimation under heterogeneous substitution pattern among lineages. (2002) (262)
- Gene Expression Intensity Shapes Evolutionary Rates of the Proteins Encoded by the Vertebrate Genome (2004) (239)
- Statistics and truth in phylogenomics. (2012) (231)
- Evolution of modern birds revealed by mitogenomics: timing the radiation and origin of major orders. (2011) (217)
- A genomic timescale for the origin of eukaryotes (2001) (202)
- Precision of molecular time estimates. (2004) (195)
- Placing confidence limits on the molecular age of the human-chimpanzee divergence. (2005) (173)
- Molecular Evolutionary Genetic Analysis (2000) (160)
- Deep Model Based Transfer and Multi-Task Learning for Biological Image Analysis (2015) (156)
- Emission of Nitrous Oxide from Rice-Wheat Systems of Indo-Gangetic Plains of India (2002) (154)
- Multiple sequence alignment: in pursuit of homologous DNA positions. (2007) (149)
- Genomic sequence of a ranavirus (family Iridoviridae) associated with salamander mortalities in North America. (2003) (143)
- Whole-genome sequencing of the snub-nosed monkey provides insights into folivory and evolutionary history (2014) (142)
- TimeTree2: species divergence times on the iPhone (2011) (134)
- Taxon sampling, bioinformatics, and phylogenomics. (2003) (132)
- Neutral substitutions occur at a faster rate in exons than in noncoding DNA in primate genomes. (2003) (128)
- Patterns of transitional mutation biases within and among mammalian genomes. (2003) (114)
- The origin of Metazoa: a transition from temporal to spatial cell differentiation (2009) (111)
- Theoretical Foundation of the RelTime Method for Estimating Divergence Times from Variable Evolutionary Rates (2017) (110)
- Vertebrate Genomes Compared (2002) (108)
- Exceptional reduction of the plastid genome of saguaro cactus (Carnegiea gigantea): Loss of the ndh gene suite and inverted repeat. (2015) (106)
- Neighbor-Joining Method (2004) (105)
- The durability of immunity against reinfection by SARS-CoV-2: a comparative evolutionary study (2021) (102)
- Efficiency of the Neighbor-Joining Method in Reconstructing Deep and Shallow Evolutionary Relationships in Large Phylogenies (2000) (99)
- BEST: a novel computational approach for comparing gene expression patterns from early stages of Drosophila melanogaster development. (2002) (91)
- Heterogeneity of nucleotide frequencies among evolutionary lineages and phylogenetic inference. (2003) (91)
- Mutation and linkage disequilibrium in human mtDNA (2001) (90)
- Performance of relaxed-clock methods in estimating evolutionary divergence times and their credibility intervals. (2010) (90)
- Methane emission from rice–wheat cropping system in the Indo-Gangetic plain in relation to irrigation, farmyard manure and dicyandiamide application (2003) (88)
- Structural dynamics flexibility informs function and evolution at a proteome scale (2013) (86)
- Methane Emissions from Irrigated Rice Fields in Northern India (New Delhi) (2000) (85)
- Advances in Time Estimation Methods for Molecular Data. (2016) (83)
- Phylomedicine: an evolutionary telescope to explore and diagnose the universe of disease mutations. (2011) (77)
- Maximum likelihood outperforms maximum parsimony even when evolutionary rates are heterotachous. (2005) (74)
- More reliable estimates of divergence times in Pan using complete mtDNA sequences and accounting for population structure (2010) (71)
- Bioinformatics software for biologists in the genomics era (2007) (70)
- Evolutionary anatomies of positions and types of disease-associated and neutral amino acid mutations in the human genome (2006) (69)
- Stoichiogenomics: the evolutionary ecology of macromolecular elemental composition. (2011) (69)
- Quantitative Analysis of the Drosophila Segmentation Regulatory Network Using Pattern Generating Potentials (2010) (69)
- Nitrous oxide emission from different fertilizers and its mitigation by nitrification inhibitors in irrigated rice (2000) (68)
- Evolutionary relationships of eukaryotic kingdoms (1996) (67)
- Evolutionary diagnosis method for variants in personal exomes (2012) (66)
- Ecological nitrogen limitation shapes the DNA composition of plant genomes. (2009) (65)
- TimeTree 5: An Expanded Resource for Species Divergence Times (2022) (64)
- Signatures of ecological resource availability in the animal and plant proteomes. (2006) (63)
- The Role of Conformational Dynamics and Allostery in Modulating Protein Evolution. (2020) (62)
- Positional conservation and amino acids shape the correct diagnosis and population frequencies of benign and damaging personal amino acid mutations. (2009) (60)
- Performance of computational tools in evaluating the functional impact of laboratory-induced amino acid mutations (2012) (59)
- Drosophila Gene Expression Pattern Annotation through Multi-Instance Multi-Label Learning (2009) (59)
- Tempo and Mode of Nucleotide Substitution in gag andenv Gene Fragments in Human Immunodeficiency Virus Type 1 Populations with a Known Transmission History (1998) (57)
- FlyExpress: visual mining of spatiotemporal patterns for genes and publications in Drosophila embryogenesis (2011) (54)
- Relationship between gene co-expression and sharing of transcription factor binding sites in Drosophila melanogaster (2009) (47)
- A bag-of-words approach for Drosophila gene expression pattern annotation (2009) (47)
- Nullomers: Really a Matter of Natural Selection? (2007) (46)
- Increased biogas production using microbial stimulants. (2001) (46)
- Sharing and re-use of phylogenetic trees (and associated data) to facilitate synthesis (2012) (45)
- Prospects for building large timetrees using molecular data with incomplete gene coverage among species. (2014) (45)
- Human genomic disease variants: A neutral evolutionary explanation (2012) (43)
- Fast and Accurate Estimates of Divergence Times from Big Data (2017) (43)
- Genomics. Vertebrate genomes compared. (2002) (41)
- Molecular Biology and Evolution of Cancer: From Discovery to Action (2019) (40)
- Methane emission from two Indian soils planted with different rice cultivars (1997) (40)
- An evolutionary portrait of the progenitor SARS-CoV-2 and its dominant offshoots in COVID-19 pandemic (2020) (40)
- Discovering the Timetree of Life (2009) (40)
- Bayesian Phylogenetic Analysis (2004) (38)
- Automated annotation of Drosophila gene expression patterns using a controlled vocabulary (2008) (38)
- Drosophila gene expression pattern annotation using sparse features and term-term interactions (2009) (37)
- A Machine Learning Method for Detecting Autocorrelation of Evolutionary Rates in Large Phylogenies (2019) (37)
- Single column discrepancy and dynamic max-mini optimizations for quickly finding the most parsimonious evolutionary trees (2000) (34)
- Drosophila gene expression pattern annotation through multi-instance multi-label learning. (2012) (34)
- Biological relevance of computationally predicted pathogenicity of noncoding variants (2019) (34)
- MBE Citation Classics (2016 Edition). (2016) (34)
- MEGA-MD: molecular evolutionary genetics analysis software with mutational diagnosis of amino acid variation (2014) (34)
- Signatures of nitrogen limitation in the elemental composition of the proteins involved in the metabolic apparatus (2009) (34)
- A Protocol for Diagnosing the Effect of Calibration Priors on Posterior Time Estimates: A Case Study for the Cambrian Explosion of Animal Phyla. (2015) (34)
- Fast and slow implementations of relaxed-clock methods show similar patterns of accuracy in estimating divergence times. (2011) (32)
- Identifying spatially similar gene expression patterns in early stage fruit fly embryo images: binary feature versus invariant moment digital representations (2004) (32)
- Higher intensity of purifying selection on >90% of the human genes revealed by the intrinsic replacement mutation rates. (2006) (31)
- Phylogenetic construction of 17 bacterial phyla by new method and carefully selected orthologs. (2009) (30)
- Classification of Drosophila embryonic developmental stage range based on gene expression pattern images. (2006) (30)
- Rampant purifying selection conserves positions with posttranslational modifications in human proteins. (2011) (30)
- Computational enhancement of single-cell sequences for inferring tumor evolution (2018) (29)
- Conformational dynamics of nonsynonymous variants at protein interfaces reveals disease association (2015) (28)
- Purifying selection modulates the estimates of population differentiation and confounds genome-wide comparisons across single-nucleotide polymorphisms. (2012) (28)
- Reliable Confidence Intervals for RelTime Estimates of Evolutionary Divergence Times (2019) (25)
- Predicting clone genotypes from tumor bulk sequencing of multiple samples (2018) (24)
- Integration of structural dynamics and molecular evolution via protein interaction networks: a new era in genomic medicine. (2015) (24)
- Genome-Wide Profiling of Cap-Independent Translation Enhancing Elements in the Human Genome (2013) (24)
- Evolutionary balancing is critical for correctly forecasting disease-associated amino acid variants. (2013) (23)
- Comparison of embryonic expression within multigene families using the flyexpress discovery platform reveals more spatial than temporal divergence (2012) (23)
- Phylogenetic placement of metagenomic reads using the minimum evolution principle (2015) (21)
- Power and pitfalls of computational methods for inferring clone phylogenies and mutation orders from bulk sequencing data (2019) (21)
- RelTime Relaxes the Strict Molecular Clock throughout the Phylogeny (2017) (20)
- Learning Sparse Representations for Fruit-Fly Gene Expression Pattern Image Annotation and Retrieval (2012) (20)
- Developmental stage annotation of Drosophila gene expression pattern images via an entire solution path for LDA (2008) (19)
- Beaver and Naked Mole Rat Genomes Reveal Common Paths to Longevity. (2020) (19)
- Methods for incorporating the hypermutability of CpG dinucleotides in detecting natural selection operating at the amino acid sequence level. (2009) (19)
- An Evolutionary Portrait of the Progenitor SARS-CoV-2 and Its Dominant Offshoots in COVID-19 Pandemic (2021) (19)
- Evolutionary meta-analysis of association studies reveals ancient constraints affecting disease marker discovery. (2012) (19)
- Somatic evolutionary timings of driver mutations (2018) (18)
- Codon-based detection of positive selection can be biased by heterogeneous distribution of polar amino acids along protein sequences. (2006) (18)
- A Molecular Evolutionary Reference for the Human Variome. (2016) (17)
- Accurate timetrees require accurate calibrations (2018) (16)
- Somatic selection distinguishes oncogenes and tumor suppressor genes (2019) (16)
- Where did SARS-CoV-2 come from? (2020) (16)
- Authorship Trends in Agriculture Research: a Bibliometric Analysis (2004) (15)
- Association of orthodenticle with natural variation for early embryonic patterning in Drosophila melanogaster. (2009) (15)
- Automated annotation of developmental stages of Drosophila embryos in images containing spatial patterns of expression (2013) (14)
- A new method for inferring timetrees from temporally sampled molecular sequences (2019) (14)
- Automatic annotation techniques for gene expression images of the fruit fly embryo (2005) (14)
- Relative Efficiencies of Simple and Complex Substitution Models in Estimating Divergence Times in Phylogenomics (2020) (14)
- Mitigation of N2O emission from an alluvial soil by application of karanjin (2001) (13)
- Erratum: cDNA cloning, expression analysis, and mapping of the mouse Nedd4 gene (Genomics (1997) 40:3 (435-443)) (1997) (13)
- GGE Biplot Analysis of Genotype×Environment Interaction in Soybean Grown in NEH Regions of India (2014) (13)
- Image-level and group-level models for Drosophila gene expression pattern annotation (2013) (13)
- Molecular dating for phylogenies containing a mix of populations and species by using Bayesian and RelTime approaches (2020) (13)
- Ancestral State Reconstruction (2014) (13)
- Measuring conservation of contiguous sets of autosomal markers on bovine and porcine genomes in relation to the map of the human genome. (2002) (13)
- MBE citation classics (2015 edition). (2015) (12)
- Persistence of alpha and beta isomers of endosulphan and endosulphan sulphate in diverse soils of India as influenced by flooding. (1999) (12)
- Functional, Morphological, and Evolutionary Characterization of Hearing in Subterranean, Eusocial African Mole-Rats (2020) (12)
- MBE Citation Classics (2018 Edition). (2018) (11)
- A mesh generation and machine learning framework for Drosophila gene expression pattern image analysis (2013) (11)
- Erratum: Disparity index: A simple statistic to measure and test the homogeneity of substitution patterns between molecular sequences (Genetics (158) (1321-1327)) (2001) (11)
- MBE Citation Classics (2017 Edition). (2017) (11)
- Adaptive Landscape of Protein Variation in Human Exomes (2018) (10)
- Evolutionary Diagnosis of non-synonymous variants involved in differential drug response (2015) (10)
- Efficient Methods for Dating Evolutionary Divergences (2020) (9)
- Signatures of natural selection on mutations of residues with multiple posttranslational modifications. (2014) (9)
- Genome-wide analysis indicates association between heterozygote advantage and healthy aging in humans (2019) (9)
- Constraining fossil calibrations for molecular clocks (2006) (9)
- Exploring spatial patterns of gene expression from Fruit Fly embryogenesis on the iPhone (2012) (9)
- Effect of DCD, FYM and Moisture regime on nitrous oxide emission from an Alluvial soil in rice-wheat cropping system (2003) (9)
- Abstracts from the 3rd International Genomic Medicine Conference (3rd IGMC 2015) (2016) (8)
- Delineation of Tumor Migration Paths by Using a Bayesian Biogeographic Approach (2019) (7)
- Fast and accurate bootstrap confidence limits on genome-scale phylogenies using little bootstraps (2021) (7)
- Molecular Clock: Testing (2011) (6)
- e-GRASP: an integrated evolutionary and GRASP resource for exploring disease associations (2016) (6)
- TreeMap: a structured approach to fine mapping of eQTL variants (2020) (6)
- Editor's Inaugural Message. (2013) (6)
- Molecular and morphological clocks for estimating evolutionary divergence times (2020) (5)
- The Reliability and Stability of an Inferred Phylogenetic Tree from Empirical Data (2017) (5)
- Molecular Phylogeny Reconstruction (2020) (5)
- On estimating evolutionary probabilities of population variants (2018) (5)
- Rhizobia and their Bio-Partners as Novel Drivers for Functional Remediation in Contaminated Soils (2018) (5)
- Alan Filipski positions Multiple sequence alignment : In pursuit of homologous DNA (2007) (5)
- Tree of Life (2014) (5)
- Evolutionary Sparse Learning for Phylogenomics (2021) (5)
- The somatic molecular evolution of cancer: Mutation, selection, and epistasis. (2021) (5)
- Neutral Theory, Disease Mutations, and Personal Exomes (2018) (5)
- Effect of Carbofuran and Hexachlorocyclohexane on N2O Production in Alluvial Soils (1999) (4)
- PathFinder: Bayesian inference of clone migration histories in cancer. (2020) (4)
- Pushing Back the Expansion of Introns in Animal Genomes (2005) (4)
- Next generation methods and tools for timing the evolution of species and strains (2014) (4)
- Embracing Green Computing in Molecular Phylogenetics (2022) (4)
- Dynamic coupling of residues within proteins as a mechanistic foundation of many enigmatic pathogenic missense variants (2021) (4)
- A new method for detecting autocorrelation of evolutionary rates in large phylogenies (2018) (4)
- Waiting for the truth: is reluctance in accepting an early origin hypothesis for SARS-CoV-2 delaying our understanding of viral emergence? (2022) (3)
- Common Treatment, Common Variant: Evolutionary Prediction of Functional Pharmacogenomic Variants (2021) (3)
- FlyExpress 7: An Integrated Discovery Platform To Study Coexpressed Genes Using in Situ Hybridization Images in Drosophila (2017) (3)
- Heterogeneity of Nucleotide Frequencies Among Evolutionary Lineages (2003) (3)
- Using a GTR+Γ substitution model for dating sequence divergence when stationarity and time-reversibility assumptions are violated (2020) (3)
- Abstracts from the 3rd International Genomic Medicine Conference (3rd IGMC 2015) (2016) (3)
- Migrations of cancer cells through the lens of phylogenetic biogeography (2021) (3)
- Biological Image Analysis via Matrix Approximation (2009) (3)
- Abstracts from the 3rd International Genomic Medicine Conference (3rd IGMC 2015) (2016) (3)
- PathFinder: Bayesian inference of clone migration histories in cancer (2020) (3)
- GRASP [Genomic Resource Access for Stoichioproteomics]: comparative explorations of the atomic content of 12 Drosophila proteomes (2013) (3)
- Rooting Phylogenetic Trees (2014) (3)
- Reply to: "Proper reporting of predictor performance" (2014) (3)
- Genomic Regulatory Systems: Development and Evolution.ByEric H Davidson.San Diego (California): Academic Press. $49.95. xii + 261 p; ill.; index. ISBN: 0–12–205351–6. 2001. (2002) (3)
- The Evolutionary History of Amino Acid Variations Mediating Increased Resistance of S. aureus Identifies Reversion Mutations in Metabolic Regulators (2013) (3)
- Classification and indexing of gene expression images (2001) (3)
- Pervasive correlation of molecular evolutionary rates in the tree of life (2018) (2)
- Epistasis produces an excess of invariant sites in neutral molecular evolution (2021) (2)
- Tumors Are Evolutionary Island-Like Ecosystems (2021) (2)
- Lower bounds on multiple sequence alignment using exact 3-way alignment (2007) (2)
- TopHap: Rapid inference of key phylogenetic structures from common haplotypes in large genome collections with limited diversity (2021) (2)
- No Positive Selection for G Allele in a p53 Response Element in Europeans (2014) (2)
- Data-driven speciation tree prior for better species divergence times in calibration-poor molecular phylogenies (2021) (2)
- A phylogenetic approach to study the evolution of somatic mutational processes in cancer (2022) (2)
- positionssequence alignment: In pursuit of homologous DNA (2007) (1)
- Open Access Journal in Bioinformatics: A Study (2017) (1)
- Molecular Memories of a Cambrian Fossil (2020) (1)
- Molecular dating for phylogenies containing a mix of populations and species (2019) (1)
- Reconstructing vertebrate phylogenetic trees (2005) (1)
- Learning Sparse Representations for Fruit-Fly Gene Expression Pattern Image Annotation and Retrieval (2012) (1)
- Interactive effect of TLR SNPs and exposure to sexually transmitted infections on prostate cancer risk in Jamaican men (2020) (1)
- Evolutionary Diagnosis of non-synonymous variants involved in differential drug response (2015) (1)
- A Report by the Editor-in-Chief for MBE, Volume 31. (2015) (1)
- “MacTrees made easy”—Review of “Phylogenetic trees made easy: a how-to manual for molecular biologists” by Barry G. Hall (2003) (1)
- Phylogenetic placement of metagenomic reads using the minimum evolution principle (2015) (1)
- Equivalence Between the S Matrix and Potential Formalism of K S − K L Decay (1972) (1)
- MBE Citation Classics (2019 Edition). (2019) (1)
- A Report by the Editor-in-Chief for MBE, Volume 32. (2013) (1)
- A mesh generation and machine learning framework for Drosophilagene expression pattern image analysis (2013) (1)
- Branch-Length Estimation (2014) (1)
- Assessing Rapid Relaxed-Clock Methods for Phylogenomic Dating (2021) (1)
- Dynamic Allosteric Residue Coupling Reveals Disease Mechanism for Gaucher Disease and NSNVS Across the Proteome (2020) (1)
- Erratum to: e-GRASP: an integrated evolutionary and GRASP resource for exploring disease associations (2017) (1)
- GRASP [Genomic Resource Access for Stoichioproteomics]: comparative explorations of the atomic content of 12 Drosophila proteomes (2013) (1)
- Epistasis Creates Invariant Sites and Modulates the Rate of Molecular Evolution (2022) (1)
- Efficient Methods for Dating Evolutionary Divergences 12 (2021) (1)
- Environmental Isotopes in Groundwater Applications (2018) (1)
- Molecular and morphological clocks for estimating evolutionary divergence times (2021) (1)
- MBE Emerging Classics 2020. (2019) (1)
- Biodegradation of alpha and beta isomers of endosulphan and endosulphan sulphate in Indian soils. (2000) (1)
- Effect of Isomers of Hexachlorocyclohexane on N2O Production in Nonflooded and Flooded Soil, Unamended or Amended with Urea (2000) (1)
- Maximum Likelihood Phylogeny Reconstruction (2004) (1)
- A Report by the Editor-in-Chief for Molecular Biology and Evolution (MBE), Volume 34. (2018) (0)
- Submitted as Research Article for publication in Molecular Biology and Evolution) (2006) (0)
- myFX: a turn-key software for laboratory desktops to analyze spatial patterns of gene expression in Drosophila embryos (2014) (0)
- Modern Genetic Analysis: Integrating Genes and Genomes.Second Edition. ByAnthony J F Griffiths, William M Gelbart, Richard C Lewontin, and Jeffrey H Miller.New York: W. H. Freeman. $75.00. xxi + 736 p; ill.; index. ISBN: 0–7167–4382–5. 2002. (2002) (0)
- Phylomedicine of mutational processes in somatic cancer cell populations (2021) (0)
- On estimating evolutionary probabilities of population variants (2019) (0)
- Maximum-Parsimony Principle (Occam's Razor, Parsimony) (2004) (0)
- A Report by the Editor-in-Chief for Molecular Biology and Evolution (MBE), Volume 36 (2020) (0)
- TopHap: rapid inference of key phylogenetic structures from common haplotypes in large genome collections with limited diversity (2022) (0)
- SMBE Editors and Council. (2015) (0)
- Abstract 3591: A new method to infer clonal sequences and phylogenies from personal tumor genome profiles (2017) (0)
- Power and pitfalls of computational methods for inferring clone phylogenies and mutation orders from bulk sequencing data (2020) (0)
- Subscription Page. (2016) (0)
- Somatic evolutionary timings of driver mutations (2018) (0)
- Using Disease-Associated Coding Sequence Variation to Investigate Functional Compensation by Human Paralogous Proteins (2015) (0)
- A Report by the Editor-in-Chief for Molecular Biology and Evolution (MBE), Volume 37 (2021) (0)
- Molecular Sequence Analysis: A Primer on Computational and Bioinformatic Approaches (2009) (0)
- Genomes.Second Edition. ByT A Brown.Published by Wiley‐Liss, New York, by arrangement with BIOS Scientific, Oxford. $97.50. xxvii + 572 p; ill.; index. ISBN: 0–471–25046–5. 2002. (2003) (0)
- Assessment of genetic parameters and correlation analysis in F5 progenies of an interspecific cross of mungbean x blackgram (2015) (0)
- Biophysical Insights of Neutral and Non-Neutral Sequence Variants in the Human Proteome (2014) (0)
- Adaptive landscape of protein variation in human (2018) (0)
- of a Cambrian Fossil (2020) (0)
- Limitations of Phylogenomic Data Can Drive Inferred Speciation Rate Shifts (2022) (0)
- Publication Trends in Groundnut and Mustard Research: a Scientometric Study (2017) (0)
- Comprar Molecular Sequence Analysis: A Primer on Computational and Bioinformatic Approaches | Sudhir Kumar | 9780471650997 | Wiley (2009) (0)
- Protein dynamics provide mechanistic insights about the epistatic relationships among highly observed potentially adaptive missense variants (2022) (0)
- Genome Map: Comparative Genomics- Mammalian Radiations (1999) (0)
- Next generation methods and tools for timing the evolution of species and strains (2014) (0)
- TopHap: rapid inference of key phylogenetic structures from common haplotypes in large genome collections with limited diversity (2022) (0)
- Classification of Stained Embryonic Images of Drosophila (2003) (0)
- Research article An Improved Implementation of Effective Number of Codons (N c ) (2012) (0)
- Adventures in Evolution: The Narrative of Tardigrada, Trundlers in Time (2019) (0)
- Subscription Page. (2016) (0)
- Molecular Clock (Evolutionary Clock, Rate of Evolution) (2014) (0)
- Consensus Tree (Strict Consensus, Majority-Rule Consensus, Supertree) (2014) (0)
- Biological relevance of computationally predicted pathogenicity of noncoding variants (2019) (0)
- Minimum‐Evolution Principle (2004) (0)
- DEVELOPMENT OF A FULLY AUTOMATED PROCESSING CARTRIDGE FOR THE STR-TYPING OF SEXUAL ASSAULT SAMPLES (2006) (0)
- M olecular B iology and E volution (2013) (0)
- e-GRASP: an integrated evolutionary and GRASP resource for exploring disease associations (2016) (0)
- Clone Phylogenetics Reveals Metastatic Tumor Migrations, Maps, and Models (2022) (0)
- Taming the Selection of Optimal Substitution Models in Phylogenomics by Site Subsampling and Upsampling (2022) (0)
- Maximum Parsimony Principle (Parsimony, Occam's Razor) (2014) (0)
- Relationship between incidence of Leucinodes orbonalis Guenee and sugar content present in the shoots and fruits of different brinjal varieties (2017) (0)
- Editor's message for 2014. (2014) (0)
- Genome-wide analysis indicates association between heterozygote advantage and healthy aging in humans (2019) (0)
- How to Build a Super Predator: From Genotype to Phenotype (2021) (0)
- Discovering research articles containing evolutionary timetrees by machine learning (2023) (0)
- Sequence Distance Measures (2014) (0)
- Society for Molecular Biology and Evolution a report by Editor-in-Chief MBE Volume 30. (2014) (0)
- A Report by the Editor-in-Chief for Molecular Biology and Evolution (MBE), Volume 35. (2020) (0)
- MBE Transitions to the Open Access Publication Model in 2021 (2020) (0)
- A Report by the Editor-in-Chief for MBE, Volume 33. (2017) (0)
- MOCA for Integrated Analysis of Gene Expression and Genetic Variation in Single Cells (2022) (0)
- Abstract 1573: Detection of late-arising driver mutations using multi-sample tumor sequencing data (2017) (0)
- A Report by the Editor-in-Chief for Molecular Biology and Evolution (MBE), Volume 38 (2022) (0)
- Erratum to: e-GRASP: an integrated evolutionary and GRASP resource for exploring disease associations (2017) (0)
- Split-Transformer Impute (STI): Genotype Imputation Using a Transformer-Based Model (2023) (0)
- Phylogenomic pipeline and construction of a multi-gene dataset for Metazoa (2008) (0)
- Abstract 1923: Distinct evolutionary and mutational patterns in oncogenes and tumor suppressor genes (2015) (0)
- Protein dynamics provide mechanistic insights about epistasis among common missense polymorphisms. (2023) (0)
- Faculty Opinions recommendation of The effect of strong purifying selection on genetic diversity. (2018) (0)
- Correction: Quantitative Analysis of the Drosophila Segmentation Regulatory Network Using Pattern Generating Potentials (2013) (0)
- MBE Emerging Classics 2021 (2020) (0)
- personal amino acid mutations diagnosis and population frequencies of benign and damaging Positional conservation and amino acids shape the correct Material Supplemental (2009) (0)
- Consensus Tree (Majority‐Rule Consensus Tree, Strict Consensus Tree, Supertree) (2004) (0)
- Subscription Page. (2016) (0)
- Structural and functional studies of serine acetyltransferase isoform from Entamoeba histolytica reveals novel role of the C-terminal tail in loss of regulation from feedback inhibition. (2022) (0)
- SMBE Editors and Council. (2016) (0)
- Open Access Journal in Bioinformatics (2019) (0)
- Image-level and group-level models for Drosophilagene expression pattern annotation (2013) (0)
- Effect of farmyard manure amendment on nitrous oxide emission from three texturally-different soils (2003) (0)
- Sharing and re-use of phylogenetic trees (and associated data) to facilitate synthesis (2012) (0)
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What Schools Are Affiliated With Sudhir Kumar?
Sudhir Kumar is affiliated with the following schools:
