Susumu Goto
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Computer Science
Susumu Goto's Degrees
- PhD Computer Science University of Tokyo
- Masters Computer Science University of Tokyo
- Bachelors Computer Science University of Tokyo
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(Suggest an Edit or Addition)Susumu Goto's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- KEGG: Kyoto Encyclopedia of Genes and Genomes (1999) (14471)
- KEGG: Kyoto Encyclopedia of Genes and Genomes (2000) (14231)
- KEGG for linking genomes to life and the environment (2007) (5306)
- KEGG for integration and interpretation of large-scale molecular data sets (2011) (4226)
- The KEGG resource for deciphering the genome (2004) (4101)
- From genomics to chemical genomics: new developments in KEGG (2005) (2968)
- Data, information, knowledge and principle: back to metabolism in KEGG (2013) (2848)
- KEGG for representation and analysis of molecular networks involving diseases and drugs (2009) (2187)
- Whole genome sequencing of meticillin-resistant Staphylococcus aureus (2001) (1885)
- The KEGG databases at GenomeNet (2002) (1362)
- BioPAX – A community standard for pathway data sharing (2010) (594)
- KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold (2019) (581)
- KEGG Atlas mapping for global analysis of metabolic pathways (2008) (448)
- Development of a chemical structure comparison method for integrated analysis of chemical and genomic information in the metabolic pathways. (2003) (447)
- Drug-target interaction prediction from chemical, genomic and pharmacological data in an integrated framework (2010) (409)
- jPOSTrepo: an international standard data repository for proteomes (2016) (319)
- LIGAND: database of chemical compounds and reactions in biological pathways (2002) (304)
- KEGG as a glycome informatics resource. (2006) (280)
- ViPTree: the viral proteomic tree server (2017) (258)
- A heuristic graph comparison algorithm and its application to detect functionally related enzyme clusters. (2000) (241)
- Computation with the KEGG pathway database. (1998) (239)
- Linking Virus Genomes with Host Taxonomy (2016) (219)
- PathPred: an enzyme-catalyzed metabolic pathway prediction server (2010) (210)
- Relating drug–protein interaction network with drug side effects (2012) (170)
- EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments (2006) (164)
- Reconstruction of amino acid biosynthesis pathways from the complete genome sequence. (1998) (154)
- Organizing and computing metabolic pathway data in terms of binary relations. (1997) (151)
- Computational assignment of the EC numbers for genomic-scale analysis of enzymatic reactions. (2004) (143)
- The genome of the heartworm, Dirofilaria immitis, reveals drug and vaccine targets (2012) (139)
- LIGAND: chemical database of enzyme reactions (2000) (125)
- DBGET/LinkDB: an integrated database retrieval system. (1998) (122)
- Corrigendum: The BioPAX community standard for pathway data sharing (2010) (114)
- SIMCOMP/SUBCOMP: chemical structure search servers for network analyses (2010) (112)
- Drug target prediction using adverse event report systems: a pharmacogenomic approach (2012) (107)
- Systems biology approaches and pathway tools for investigating cardiovascular disease. (2009) (102)
- Characterization of genes encoding multi-domain proteins in the genome of the filamentous nitrogen-fixing Cyanobacterium anabaena sp. strain PCC 7120. (2001) (100)
- KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains (2004) (99)
- KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters (2012) (98)
- Environmental Viral Genomes Shed New Light on Virus-Host Interactions in the Ocean (2017) (97)
- The KEGG databases and tools facilitating omics analysis: latest developments involving human diseases and pharmaceuticals. (2012) (96)
- Genome sequence of the cat pathogen, Chlamydophila felis. (2006) (94)
- DINIES: drug–target interaction network inference engine based on supervised analysis (2014) (92)
- The use of network analyses for elucidating mechanisms in cardiovascular disease. (2010) (92)
- LIGAND: chemical database for enzyme reactions (1998) (88)
- Systematic Analysis of Enzyme-Catalyzed Reaction Patterns and Prediction of Microbial Biodegradation Pathways (2007) (82)
- Taxon Richness of “Megaviridae” Exceeds those of Bacteria and Archaea in the Ocean (2018) (75)
- Type III Polyketide Synthases: Functional Classification and Phylogenomics (2017) (75)
- Prediction of glycan structures from gene expression data based on glycosyltransferase reactions (2005) (73)
- E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs (2009) (70)
- Modular Architecture of Metabolic Pathways Revealed by Conserved Sequences of Reactions (2013) (68)
- The commonality of protein interaction networks determined in neurodegenerative disorders (NDDs) (2007) (66)
- The jPOST environment: an integrated proteomics data repository and database (2018) (65)
- ODB: a database of operons accumulating known operons across multiple genomes (2005) (58)
- Network-Based Analysis and Characterization of Adverse Drug-Drug Interactions (2011) (57)
- Extraction of phylogenetic network modules from the metabolic network (2006) (55)
- Building multivariate systems biology models. (2012) (55)
- Evolutionary history and functional implications of protein domains and their combinations in eukaryotes (2007) (54)
- Multiomics in Grape Berry Skin Revealed Specific Induction of the Stilbene Synthetic Pathway by Ultraviolet-C Irradiation1 (2015) (53)
- Characterization of relationships between transcriptional units and operon structures in Bacillus subtilis and Escherichia coli (2007) (50)
- Extraction of leukemia specific glycan motifs in humans by computational glycomics. (2005) (49)
- Evaluation method for the potential functionome harbored in the genome and metagenome (2012) (48)
- An automated system for evaluation of the potential functionome: MAPLE version 2.1.0 (2016) (46)
- GENIES: gene network inference engine based on supervised analysis (2012) (43)
- Heuristics for chemical compound matching. (2003) (43)
- The BioPAX community standard for pathway data sharing (Nature Biotechnology (2010) 28, (935-942)) (2012) (41)
- MAPLE 2.3.0: an improved system for evaluating the functionomes of genomes and metagenomes (2018) (41)
- Comprehensive analysis of glycosyltransferases in eukaryotic genomes for structural and functional characterization of glycans. (2009) (40)
- Prediction of missing enzyme genes in a bacterial metabolic network (2007) (38)
- Effects of post-electrophoretic analysis on variance in gel-based proteomics (2006) (36)
- EGENES: Transcriptome-Based Plant Database of Genes with Metabolic Pathway Information and Expressed Sequence Tag Indices in KEGG1[C][W][OA] (2007) (36)
- Supplementation of pancreatic digestive enzymes alters the composition of intestinal microbiota in mice. (2018) (36)
- Locality and diel cycling of viral production revealed by a 24 h time course cross-omics analysis in a coastal region of Japan (2018) (35)
- Extraction of correlated gene clusters by multiple graph comparison. (2001) (35)
- KCF-S: KEGG Chemical Function and Substructure for improved interpretability and prediction in chemical bioinformatics (2013) (34)
- KEGG bioinformatics resource for plant genomics research. (2007) (33)
- Supervised de novo reconstruction of metabolic pathways from metabolome-scale compound sets (2013) (30)
- Two complementary representations of a scale-free network (2004) (29)
- Bioinformatics strategies for the analysis of lipids. (2009) (29)
- Regulation of metabolic networks by small molecule metabolites (2007) (27)
- Extraction of phylogenetic network modules from prokayrote metabolic pathways. (2004) (26)
- LIGAND database for enzymes, compounds and reactions (1999) (26)
- varDB: a pathogen-specific sequence database of protein families involved in antigenic variation (2008) (24)
- Inferring protein domains associated with drug side effects based on drug-target interaction network (2013) (24)
- An improved scoring scheme for predicting glycan structures from gene expression data. (2007) (22)
- Network analysis identifies a putative role for the PPAR and type 1 interferon pathways in glucocorticoid actions in asthmatics (2012) (22)
- Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach (2007) (21)
- Clofibrate-induced changes in the liver, heart, brain and white adipose lipid metabolome of Swiss-Webster mice (2007) (20)
- Fast and accurate database homology search using upper bounds of local alignment scores (2005) (19)
- Identification of Enzyme Genes Using Chemical Structure Alignments of Substrate-Product Pairs (2016) (17)
- Metabolome-scale prediction of intermediate compounds in multistep metabolic pathways with a recursive supervised approach (2014) (17)
- Comprehensive genomic analysis of sulfur-relay pathway genes. (2010) (15)
- Comprehensive Analysis of Delay in Transcriptional Regulation Using Expression Profiles (2003) (15)
- GeneRegionScan: a Bioconductor package for probe-level analysis of specific, small regions of the genome (2009) (14)
- Prediction of CTL epitope, in silico modeling and functional analysis of cytolethal distending toxin (CDT) protein of Campylobacter jejuni (2014) (14)
- Generalized reaction patterns for prediction of unknown enzymatic reactions. (2008) (13)
- Identification of endocrine disruptor biodegradation by integration of structure-activity relationship with pathway analysis. (2007) (13)
- A global representation of the carbohydrate structures: a tool for the analysis of glycan. (2005) (13)
- Pharmacoepidemiological characterization of drug-induced adverse reaction clusters towards understanding of their mechanisms (2014) (12)
- Network analysis of adverse drug interactions. (2008) (12)
- Metabolic pathway reconstruction strategies for central metabolism and natural product biosynthesis (2016) (11)
- Analysis of Binary Relations and Hierarchies of Enzymes in the Metabolic Pathways (1996) (11)
- Extraction and Analysis of Chemical Modification Patterns in Drug Development (2009) (11)
- SSDB: Sequence Similarity Database in KEGG (2001) (10)
- GLYCAN: The Database of Carbohydrate Structures (2003) (10)
- KEGG/EXPRESSION: A Database for Browsing and Analysing Microarray Expression Data (2000) (9)
- Predictive genomic and metabolomic analysis for the standardization of enzyme data (2014) (8)
- MRP1 mutated in the L0 region transports SN-38 but not leukotriene C4 or estradiol-17 (beta-D-glucuronate). (2005) (8)
- Extraction of a Thermodynamic Property for Biochemical Reactions in the Metabolic Pathway (2003) (8)
- A Systematic Analysis of Gene Functions by the Metabolic Pathway Database (1997) (7)
- PIERO ontology for analysis of biochemical transformations: Effective implementation of reaction information in the IUBMB enzyme list (2014) (7)
- Thermoplastic starch films: DOE and O2PLS methodology for optimization and increased understanding of polymer processing (2013) (7)
- Nuclear magnetic resonance metabonomic profiling using tO2PLS. (2013) (6)
- Improvement of the LIGAND Chemical Database (2002) (6)
- varDB: a database of antigenic variant sequences--current status and future prospects. (2010) (6)
- LinkDB: A Database of Cross Links between Molecular Biology Databases (1997) (6)
- Effects of pyridine exposure upon structural lipid metabolism in Swiss Webster mice. (2008) (6)
- Characterization and classification of adverse drug interactions. (2010) (5)
- KEGG and GenomeNet Resources for Predicting Protein Function from Omics Data Including KEGG PLANT Resource (2011) (5)
- Classification of Protein Sequences into Paralog and Ortholog Clusters Using Sequence Similarity Profiles of KEGG/SSDB (2003) (5)
- Borehole data and climate reconstruction in Korea (2003) (5)
- Enlistment of omics technologies in the fight against malaria: Panacea or Pandora's Box? (2006) (4)
- Virus proteins similar to human proteins as possible disturbance on human pathways (2014) (4)
- Discriminating the reaction types of plant type III polyketide synthases (2017) (4)
- >Corrigendum: Type III Polyketide Synthases: Functional Classification and Phylogenomics (2017) (4)
- Vzyme: A Template-Based Method to Predict Reactions between Two Chemical Compounds (2002) (4)
- Complete Genome Sequence Reconstruction of Amino Acid Biosynthesis Pathways from the (1998) (3)
- Integer programming-based method for completing signaling pathways and its application to analysis of colorectal cancer. (2010) (3)
- Common Features in Substrates of Multidrug Resistance Transporters (2003) (3)
- Deficiency of Gankyrin in the small intestine is associated with augmented colitis accompanied by altered bacterial composition of intestinal microbiota (2020) (3)
- Classification and Analysis of KEGG/REACTION Database (2002) (3)
- Analysis of a lipid biosynthesis protein family and phospholipid structural variations. (2010) (3)
- Conservation of gene co-regulation between two prokaryotes: Bacillus subtilis and Escherichia coli. (2005) (3)
- Characterizing common substructures of ligands for GPCR protein subfamilies. (2010) (2)
- Standard Gibbs Free Energy Changes of Enzyme Reactions in Metabolic Pathway Computation (1996) (2)
- Constructing and Annotating GENES Database in KEGG (1998) (2)
- Genome Scale Prediction of Enzyme Genes Utilizing the Knowledge of Metabolic Interactions (1996) (2)
- Metabolic Pathway Reconstruction for Malaria Parasite Plasmodium falciparum (2003) (2)
- Phylogenetic analysis of lipid mediator GPCRs. (2010) (2)
- Analysis of the differences in metabolic network expansion between prokaryotes and eukaryotes. (2006) (2)
- Tools for investigating mechanisms of antigenic variation: new extensions to varDB. (2009) (2)
- Systems Biology Approaches for Investigating the Relationship Between Lipids and Cardiovascular Disease (2011) (2)
- Genome-wide analysis of plant UGT family based on sequence and substrate information. (2010) (2)
- [KEGG GLYCAN and glycome informatics]. (2008) (2)
- A method for customized cross-species metabolic pathway comparison (2004) (2)
- The kingdom of Plantae EST Indices : a resource for plant genomics community (2004) (2)
- MUCHA: multiple chemical alignment algorithm to identify building block substructures of orphan secondary metabolites (2011) (2)
- Erratum: The BioPAX community standard for pathway data sharing (Nat. Biotechnol. (2010) 28 (935-942) (2010) (2)
- DBGET/LinkDB: An Integrated Database Retrieval System for Molecular Biology (2000) (2)
- Evaluation method for the potential functionome harbored in the genome and metagenome (2012) (2)
- Genome Scale Prediction of Two-Component Signal Transducers from the Knowledgeof Regulatory Interactions (1997) (1)
- Deductive Calculation Library for KEGG Pathway Simulation (1996) (1)
- Systems biology approaches and pathway tools for investigating cardiovascular disease w (2009) (1)
- Extraction of Correlated Gene Clusters from Multiple Graph Structures: Application (2000) (1)
- Analysis of Reactive Modules in the Metabolic Pathways (2003) (1)
- LIGAND Chemical Database for Enzymatic Reactions:A Link between enzyme structures and chemical reactions (1995) (1)
- Structure-activity relationships and pathway analysis of biological degradation processes (2006) (1)
- The Construction and Analysis of the Multidrug Resistance Transporter Knowledge-Base (2002) (1)
- An algorithm for graph isomorphism and its application to KEGG Compound Search (2004) (1)
- Prediction of Glycan Structures from Glycosyltransferase Expression Profiles (2003) (1)
- Analysis of Dictyostelium discoideum cDNA Obtained from Multicellular and Unicellular Stages (2001) (1)
- Analysis of protein interaction networks in neurodegenerative disorders (2005) (1)
- REVIEW KEGG as a glycome informatics resource (2006) (1)
- Analysis of Domain Combinations in Eukaryotic Genomes (2003) (1)
- TogoID: an exploratory ID converter to bridge biological datasets (2022) (1)
- Ortholog Identifiers for Integration of Genomic and Pathway Information in KEGG (1999) (1)
- Present Status of LIGAND Chemical Database for Enzyme Reactions (1997) (0)
- Chemical Continuity of Reaction Centers Along Successive Metabolic Reactions (2009) (0)
- BRITE: Biomolecular Reactions for Information Transmission and Expression (MOLECULAR BIOLOGY AND INFORMATION - Biological Information Science) (1995) (0)
- Weak Homology Detection by Profile-Profile Comparison (2002) (0)
- Extracting Common Substructures of GPCR Ligands (2009) (0)
- arDB : A database of antigenic variant sequences — Current status nd future prospects (2009) (0)
- jPOST: Development of proteome database (2017) (0)
- Integrated Growth Media Database by Standardizing Ingredient Information (2019) (0)
- Systematic Analysis of Enzyme-Catalyzed Reaction Patterns and Prediction of Microbial Biodegradation Pathways. (2007) (0)
- Automatic Assignment of Full EC Numbers Based on Structural Changes of Chemical Compounds (2005) (0)
- Extraction of Modules from the Metabolic Pathways with Phylogenetic Profile (2002) (0)
- Classification and Motif Extraction of Glycans in Bloods (2004) (0)
- [Mastering Web-based analysis of gene networks]. (2002) (0)
- 2PT107 A classification of enzymatic reactions and its application to metabolic pathway search(The 50th Annual Meeting of the Biophysical Society of Japan) (2012) (0)
- Introduction to bioinformatics. 3. Present state of integrated database. (1998) (0)
- Searching for Common Protein Networks in Neurodegenerative Disorders (2002) (0)
- Network analysis identifies a putative role for the PPAR and type 1 interferon pathways in glucocorticoid actions in asthmatics (2012) (0)
- Ocean metagenomics using improved MAPLE system (2016) (0)
- Revealing phenotype-associated functional differences by genome-wide scan of ancient haplotype blocks (2017) (0)
- An Analysis of Cancer Microarrays in the Pathway Context Using Bayesian Networks (2002) (0)
- EGENES: Transcriptome-based plant metabolic pathway database in KEGG (2007) (0)
- A Signal Transduction Database (1994) (0)
- jPOST: Development of reanalysis protocol toward control of false discovery rate in peptide identification (2017) (0)
- jPOST: Proteome Database Project (2016) (0)
- Deciphering the evolution of gene organization and metabolic networks from operon and conserved reaction sequences (2015) (0)
- jPOST: Standard repository for proteome (2016) (0)
- Analysis of plant UGT family sequences and substrate specificity (2009) (0)
- jPOST: Standardization of Proteomics Workflow (2015) (0)
- The Construction and Analysis of the Multidrug Resistance Transporter KnowledgeBase (2002) (0)
- jPOST: Development of Re-analysis Protocol (2016) (0)
- 3P266 Identification of metabolic pathway modules by conserved reaction sequences and its application to evolutionary analysis(22D. Bioinformatics: Molecular evolution,Poster) (2013) (0)
- 3S-Dp01 Metabolic pathway database for Human gut microbiome (2015) (0)
- Gut microbiota changes induced by elemental diet and pancrelipase treatment in cecum, transverse colon, and feces of mice (2016) (0)
- Unit-Based de novo Drug Design Using a Library of Protein-Ligand Interaction Sites (1999) (0)
- Analysis of Tissue Specific Expression Patterns of Isozymes (2006) (0)
- Correction: Locality and diel cycling of viral production revealed by a 24 h time course cross-omics analysis in a coastal region of Japan (2018) (0)
- [Integrated drug information resource]. (2007) (0)
- Dissecting protein-protein interaction-mediated cross-talk pathways in hepatocellular carcinoma (2009) (0)
- Locality and diel cycling of viral production revealed by a 24 h time course cross-omics analysis in a coastal region of Japan (2018) (0)
- Super micellar structures of high polymers (1960) (0)
- Open-sourced Mass++ for Omics Analysis (2015) (0)
- Characteristic Chemical Transformation Patterns in Biodegradation Pathways (2005) (0)
- Results and Conclusions (2019) (0)
- 1R1130 Detection of weak sequence similarity with profile-profile comparison (2002) (0)
- Comprehensive analysis and prediction of synthetic lethality using subcellular locations. (2005) (0)
- Extraction of Related Genes in the Vesicular Transport by Simultaneous Comparison of Two-Hybrid and Microarray Data (2001) (0)
- A Knowledge Base for Searching and Browsing Metabolic Pathways (2003) (0)
- jPOST project for proteomics data and analysis tools (2018) (0)
- Integration of Biological Features of Multiple Genomes-The Construction of “ Genome Indices ” database (2004) (0)
- Analysis of the Evolutionary Relationships of the PDZ Domains (2002) (0)
- Extraction of Correlated Gene Clusters from Multiple Graph Structures: Theory (2000) (0)
- jPOST: Integrated database for proteomes (2017) (0)
- Analysis of the Maternal mRNAs Encoding DNA-Binding Motifs in the Ascidian Egg Using SSDB (2001) (0)
- KEGG/SSDB is a new database for exploring the protein universe / Human cell cycle pathway and its comparison to viral genomes (BIOINFORMATICS CENTER - Bioknowledge Systems) (2002) (0)
- Analysis of the Sub-Telomeric Region of the Malaria Parasite P . falciparum Using aCGH Data (2006) (0)
- Phylogenetic Analysis of Domain Combinations in Eukaryotic Genomes (2005) (0)
- Comparative Analysis of Conditional Regulation Across the Yeast Genomes (2004) (0)
- Indirect Relations in Yeast Protein Interactome (2002) (0)
- Metabolic pathway interface to molecular biology databases (1998) (0)
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What Schools Are Affiliated With Susumu Goto?
Susumu Goto is affiliated with the following schools:
