Sylvain Brisse
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Computer Science
Sylvain Brisse's Degrees
- PhD Computer Science Université Paris Cité
- Bachelors Computer Science Université Paris Cité
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(Suggest an Edit or Addition)Sylvain Brisse's Published Works
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Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Multilocus Sequence Typing of Klebsiella pneumoniae Nosocomial Isolates (2005) (1152)
- Genome Microevolution of Chikungunya Viruses Causing the Indian Ocean Outbreak (2006) (1106)
- Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health (2015) (810)
- Guidelines for the validation and application of typing methods for use in bacterial epidemiology. (2007) (784)
- Ancient Origin and Gene Mosaicism of the Progenitor of Mycobacterium tuberculosis (2005) (629)
- The Population Structure of Acinetobacter baumannii: Expanding Multiresistant Clones from an Ancestral Susceptible Genetic Pool (2010) (583)
- Multilocus Sequence Typing as a Replacement for Serotyping in Salmonella enterica (2012) (540)
- A New Perspective on Listeria monocytogenes Evolution (2008) (503)
- Origin, Spread and Demography of the Mycobacterium tuberculosis Complex (2008) (467)
- Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes (2016) (424)
- Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity (2016) (419)
- Virulent Clones of Klebsiella pneumoniae: Identification and Evolutionary Scenario Based on Genomic and Phenotypic Characterization (2009) (411)
- Genomic Definition of Hypervirulent and Multidrug-Resistant Klebsiella pneumoniae Clonal Groups (2014) (341)
- Evolutionary History of Salmonella Typhi (2006) (340)
- Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains (2008) (314)
- Identification of six Trypanosoma cruzi phylogenetic lineages by random amplified polymorphic DNA and multilocus enzyme electrophoresis. (2000) (295)
- Genotypic and phenotypic characterization of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex with the proposal of Acinetobacter pittii sp. nov. (formerly Acinetobacter genomic species 3) and Acinetobacter nosocomialis sp. nov. (formerly Acinetobacter genomic species 13TU). (2011) (287)
- Phylogenetic diversity of Klebsiella pneumoniae and Klebsiella oxytoca clinical isolates revealed by randomly amplified polymorphic DNA, gyrA and parC genes sequencing and automated ribotyping. (2001) (266)
- wzi Gene Sequencing, a Rapid Method for Determination of Capsular Type for Klebsiella Strains (2013) (243)
- Characterisation of large and small subunit rRNA and mini-exon genes further supports the distinction of six Trypanosoma cruzi lineages. (2001) (233)
- Diversity of aminoglycoside-resistance genes and their association with class 1 integrons among strains of pan-European Acinetobacter baumannii clones. (2004) (233)
- Identification of a new geographically widespread multiresistant Acinetobacter baumannii clone from European hospitals. (2004) (232)
- Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations (2018) (206)
- Genome analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of the etiologic agent of tuberculosis (2013) (206)
- CRISPR Typing and Subtyping for Improved Laboratory Surveillance of Salmonella Infections (2012) (201)
- Probable zoonotic leprosy in the southern United States. (2011) (188)
- Worldwide Distribution of Major Clones of Listeria monocytogenes (2011) (185)
- Animal and human pathogenic Escherichia coli strains share common genetic backgrounds. (2011) (185)
- Identification of Acinetobacter Species and Genotyping of Acinetobacter baumannii by Multilocus PCR and Mass Spectrometry (2006) (183)
- mecA Gene Is Widely Disseminated in Staphylococcus aureus Population (2002) (173)
- AlienTrimmer: a tool to quickly and accurately trim off multiple short contaminant sequences from high-throughput sequencing reads. (2013) (172)
- Evidence for in-vivo transfer of mecA DNA between strains of Staphylococcus aureus (2001) (172)
- Population structure and genetic typing of Trypanosoma cruzi, the agent of Chagas disease: a multilocus enzyme electrophoresis approach (2000) (168)
- Diversity and Evolution of the Class A Chromosomal Beta-Lactamase Gene in Klebsiella pneumoniae (2004) (164)
- Molecular Epidemiology of Colonizing and Infecting Isolates of Klebsiella pneumoniae (2016) (162)
- Emerging Severe and Fatal Infections Due to Klebsiella pneumoniae in Two University Hospitals in France (2011) (160)
- Phylogeny and Identification of Pantoea Species and Typing of Pantoea agglomerans Strains by Multilocus Gene Sequencing (2008) (159)
- Evaluation of High-Throughput Sequencing for Identifying Known and Unknown Viruses in Biological Samples (2011) (159)
- Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination (2017) (158)
- Evidence for genetic exchange and hybridization in Trypanosoma cruzi based on nucleotide sequences and molecular karyotype. (2003) (156)
- Emergence of carbapenem resistance in Acinetobacter baumannii in the Czech Republic is associated with the spread of multidrug-resistant strains of European clone II. (2008) (153)
- Multiplex PCR for Detection of Seven Virulence Factors and K1/K2 Capsular Serotypes of Klebsiella pneumoniae (2014) (152)
- Identification of six Trypanosoma cruzi lineages by sequence-characterised amplified region markers. (2000) (148)
- Description of Klebsiella quasipneumoniae sp. nov., isolated from human infections, with two subspecies, Klebsiella quasipneumoniae subsp. quasipneumoniae subsp. nov. and Klebsiella quasipneumoniae subsp. similipneumoniae subsp. nov., and demonstration that Klebsiella singaporensis is a junior heter (2014) (145)
- Lactobacillus paracasei Comparative Genomics: Towards Species Pan-Genome Definition and Exploitation of Diversity (2013) (139)
- Comparison of Widely Used Listeria monocytogenes Strains EGD, 10403S, and EGD-e Highlights Genomic Differences Underlying Variations in Pathogenicity (2014) (131)
- Comparative analysis of Klebsiella pneumoniae genomes identifies a phospholipase D family protein as a novel virulence factor (2014) (128)
- Hypervirulent Listeria monocytogenes clones’ adaption to mammalian gut accounts for their association with dairy products (2019) (126)
- Klebsiella variicola Is a Frequent Cause of Bloodstream Infection in the Stockholm Area, and Associated with Higher Mortality Compared to K. pneumoniae (2014) (126)
- Epidemiology of methicillin-susceptible Staphylococcus aureus lineages in five major African towns: high prevalence of Panton-Valentine leukocidin genes. (2011) (126)
- Molecular epidemiological investigation of multidrug-resistant Acinetobacter baumannii strains in four Mediterranean countries with a multilocus sequence typing scheme. (2011) (124)
- Regional Occurrence of Plasmid-Mediated Carbapenem-Hydrolyzing Oxacillinase OXA-58 in Acinetobacter spp. in Europe (2005) (123)
- Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae (2018) (116)
- Evaluation of the Etest ESBL and the BD Phoenix, VITEK 1, and VITEK 2 Automated Instruments for Detection of Extended-Spectrum Beta-Lactamases in Multiresistant Escherichia coli and Klebsiella spp (2002) (114)
- Diversity, virulence, and antimicrobial resistance of the KPC-producing Klebsiella pneumoniae ST307 clone (2017) (112)
- “Epidemic Clones” of Listeria monocytogenes Are Widespread and Ancient Clonal Groups (2013) (111)
- Real-Time Whole-Genome Sequencing for Surveillance of Listeria monocytogenes, France (2017) (108)
- Aedes albopictus Mosquito: The Main Vector of the 2007 Chikungunya Outbreak in Gabon (2009) (107)
- Evolution and Population Structure of Salmonella enterica Serovar Newport (2010) (105)
- Carbapenem-resistant Klebsiella pneumoniae exhibit variability in capsular polysaccharide and capsule associated virulence traits. (2014) (104)
- Leptospira mayottensis sp. nov., a pathogenic species of the genus Leptospira isolated from humans. (2014) (104)
- Exploring the Diversity of Listeria monocytogenes Biofilm Architecture by High-Throughput Confocal Laser Scanning Microscopy and the Predominance of the Honeycomb-Like Morphotype (2014) (103)
- Characterization of the cryptic Escherichia lineages: rapid identification and prevalence. (2011) (103)
- In Vitro Activities of Sitafloxacin (DU-6859a) and Six Other Fluoroquinolones against 8,796 Clinical Bacterial Isolates (2000) (100)
- In-vivo transfer of mecA DNA to Staphylococcus aureus [corrected]. (2001) (100)
- Klebsiella pneumoniae resistant to third-generation cephalosporins in five African and two Vietnamese major towns: multiclonal population structure with two major international clonal groups, CG15 and CG258. (2013) (100)
- Epidemiology of methicillin-resistant Staphylococcus aureus lineages in five major African towns: emergence and spread of atypical clones. (2011) (99)
- Comparative phylogenies of Burkholderia, Ralstonia, Comamonas, Brevundimonas and related organisms derived from rpoB, gyrB and rrs gene sequences. (2008) (99)
- Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain (2017) (97)
- Multilocus Sequence Typing of Lactobacillus casei Reveals a Clonal Population Structure with Low Levels of Homologous Recombination (2007) (96)
- The Genus Klebsiella (2006) (95)
- Neutral Genomic Microevolution of a Recently Emerged Pathogen, Salmonella enterica Serovar Agona (2013) (94)
- High prevalence of the arginine catabolic mobile element in carriage isolates of methicillin-resistant Staphylococcus epidermidis. (2011) (94)
- Evaluation of the Polymorphisms Associated with Tandem Repeats for Pseudomonas aeruginosa Strain Typing (2003) (93)
- Identification and antimicrobial susceptibility of 100 Klebsiella animal clinical isolates. (2005) (92)
- Differential contribution of AcrAB and OqxAB efflux pumps to multidrug resistance and virulence in Klebsiella pneumoniae. (2015) (92)
- Systematics of trypanosomes of medical and veterinary importance. (2004) (91)
- Acinetobacter seifertii sp. nov., a member of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex isolated from human clinical specimens. (2015) (90)
- Identification of Klebsiella pneumoniae, Klebsiella quasipneumoniae, Klebsiella variicola and Related Phylogroups by MALDI-TOF Mass Spectrometry (2018) (89)
- Six Groups of the OXY β-Lactamase Evolved over Millions of Years in Klebsiella oxytoca (2005) (85)
- Development of a rapid identification method for Klebsiella pneumoniae phylogenetic groups and analysis of 420 clinical isolates. (2004) (85)
- Phenotypic and genotypic characteristics of Listeria monocytogenes strains isolated during 2011–2014 from different food matrices in Switzerland (2015) (82)
- Polyphasic characterization of xanthomonads pathogenic to members of the Anacardiaceae and their relatedness to species of Xanthomonas. (2009) (82)
- Phenotypic and genotypic characteristics of Listeria monocytogenes strains isolated during 2011–2014 from different food matrices in Switzerland (2015) (82)
- Molecular Epidemiology of Multidrug-Resistant Acinetobacter baumannii in a Tertiary Care Hospital in Naples, Italy, Shows the Emergence of a Novel Epidemic Clone (2010) (80)
- Genus-wide Leptospira core genome multilocus sequence typing for strain taxonomy and global surveillance (2019) (79)
- Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis (2020) (77)
- Characterization of the novel Listeria monocytogenes PCR serogrouping profile IVb-v1. (2011) (76)
- Listeria monocytogenes sequence type 1 is predominant in ruminant rhombencephalitis (2016) (75)
- Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov. (2019) (74)
- Molecular epidemiology of extended-spectrum beta-lactamase-producing Klebsiella pneumoniae strains in a university hospital in Tunis, Tunisia, 1999-2005. (2010) (74)
- Species delineation and clonal diversity in four Bifidobacterium species as revealed by multilocus sequencing. (2010) (74)
- Comparative Analysis of the Two Acinetobacter baumannii Multilocus Sequence Typing (MLST) Schemes (2019) (73)
- Molecular Serotyping of Klebsiella Species Isolates by Restriction of the Amplified Capsular Antigen Gene Cluster (2004) (72)
- Comparative Evaluation of the BD Phoenix and VITEK 2 Automated Instruments for Identification of Isolates of the Burkholderia cepacia Complex (2002) (71)
- Revisiting the taxonomy of the genus Elizabethkingia using whole-genome sequencing, optical mapping, and MALDI-TOF, along with proposal of three novel Elizabethkingia species: Elizabethkingia bruuniana sp. nov., Elizabethkingia ursingii sp. nov., and Elizabethkingia occulta sp. nov. (2017) (70)
- Characterization of Listeria monocytogenes strains isolated during 2011-2013 from human infections in Switzerland. (2014) (70)
- LiSEQ – whole-genome sequencing of a cross-sectional survey of Listeria monocytogenes in ready-to-eat foods and human clinical cases in Europe (2019) (70)
- Identification of Klebsiella oxytoca using a specific PCR assay targeting the polygalacturonase pehX gene. (2003) (69)
- A phylogenetic analysis of the Trypanosoma cruzi genome project CL Brener reference strain by multilocus enzyme electrophoresis and multiprimer random amplified polymorphic DNA fingerprinting. (1998) (68)
- Multicenter Outbreak of Infections by Saprochaete clavata, an Unrecognized Opportunistic Fungal Pathogen (2014) (67)
- Phylogenetic Distribution of CTX-M- and Non-Extended-Spectrum-β-Lactamase-Producing Escherichia coli Isolates: Group B2 Isolates, Except Clone ST131, Rarely Produce CTX-M Enzymes (2012) (66)
- Recombining Population Structure of Plesiomonas shigelloides (Enterobacteriaceae) Revealed by Multilocus Sequence Typing (2007) (66)
- Global phylogeography and evolutionary history of Shigella dysenteriae type 1 (2016) (65)
- Emergence of Antimicrobial-Resistant Escherichia coli of Animal Origin Spreading in Humans. (2016) (63)
- Molecular Surveillance of European Quinolone-Resistant Clinical Isolates of Pseudomonas aeruginosa andAcinetobacter spp. Using Automated Ribotyping (2000) (63)
- Hospital effluent: A reservoir for carbapenemase-producing Enterobacterales? (2019) (62)
- Outbreak of a susceptible strain of Acinetobacter species 13 (sensu Tjernberg and Ursing) in an adult neurosurgical intensive care unit. (2002) (60)
- Optimized Multilocus Variable-Number Tandem-Repeat Analysis Assay and Its Complementarity with Pulsed-Field Gel Electrophoresis and Multilocus Sequence Typing for Listeria monocytogenes Clone Identification and Surveillance (2013) (59)
- Metabolic diversity of the emerging pathogenic lineages of Klebsiella pneumoniae (2017) (58)
- Genomic epidemiology and global diversity of the emerging bacterial pathogen Elizabethkingia anophelis (2016) (58)
- Variants of the Klebsiella pneumoniae OKP Chromosomal Beta-Lactamase Are Divided into Two Main Groups, OKP-A and OKP-B (2005) (58)
- Uneven Distribution of Mating Types among Genotypes of Candida glabrata Isolates from Clinical Samples (2009) (57)
- Human Leptospira Isolates Circulating in Mayotte (Indian Ocean) Have Unique Serological and Molecular Features (2011) (56)
- Evolutionary History of Helicobacter pylori Sequences Reflect Past Human Migrations in Southeast Asia (2011) (56)
- Genome-wide mosaicism within Mycobacterium abscessus: evolutionary and epidemiological implications (2016) (54)
- Multilocus sequence typing scheme for the Mycobacterium abscessus complex. (2014) (53)
- From molecular to genomic epidemiology: transforming surveillance and control of infectious diseases. (2013) (52)
- Complete Nucleotide Sequence of Two Multidrug-Resistant IncR Plasmids from Klebsiella pneumoniae (2014) (51)
- Identification of coagulase-negative staphylococci other than Staphylococcus epidermidis by automated ribotyping. (2005) (51)
- Discrimination of Klebsiella pneumoniae and Klebsiella oxytoca phylogenetic groups and other Klebsiella species by use of amplified fragment length polymorphism. (2004) (50)
- Molecular epidemiology of quinolone resistance and comparative in vitro activities of new quinolones against European Staphylococcus aureus isolates. (1999) (50)
- Molecular and epidemiological characterization of carbapenemase-producing Enterobacteriaceae in Norway, 2007 to 2014 (2017) (49)
- Comparative In Vitro Activities of Ciprofloxacin, Clinafloxacin, Gatifloxacin, Levofloxacin, Moxifloxacin, and Trovafloxacin againstKlebsiella pneumoniae, Klebsiella oxytoca,Enterobacter cloacae, and Enterobacter aerogenes Clinical Isolates with Alterations in GyrA and ParC Proteins (1999) (49)
- Tracking Nosocomial Klebsiella pneumoniae Infections and Outbreaks by Whole-Genome Analysis: Small-Scale Italian Scenario within a Single Hospital (2015) (48)
- Whole genome sequencing reveals resemblance between ESBL-producing and carbapenem resistant Klebsiella pneumoniae isolates from Austrian rivers and clinical isolates from hospitals. (2019) (48)
- Phylogenetic diversity of bat trypanosomes of subgenus Schizotrypanum based on multilocus enzyme electrophoresis, random amplified polymorphic DNA, and cytochrome b nucleotide sequence analyses. (2003) (48)
- Automated Ribotyping of Vancomycin-Resistant Enterococcus faecium Isolates (2002) (47)
- Species Distribution and Ribotype Diversity of Burkholderia cepacia Complex Isolates from French Patients with Cystic Fibrosis (2004) (47)
- From Local Surveys to Global Surveillance: Three High-Throughput Genotyping Methods for Epidemiological Monitoring of Xanthomonas citri pv. citri Pathotypes (2008) (46)
- Widespread carbapenem resistant Acinetobacter baumannii clones in Italian hospitals revealed by a multicenter study. (2011) (44)
- The emergence of multidrug-resistant Klebsiella pneumoniae of international clones ST13, ST16, ST35, ST48 and ST101 in a teaching hospital in the Paris region (2012) (44)
- Distinguishing Species of the Burkholderia cepacia Complex and Burkholderia gladioli by Automated Ribotyping (2000) (44)
- Association of Tellurite Resistance with Hypervirulent Clonal Groups of Klebsiella pneumoniae (2015) (43)
- Epidemiology of Quinolone Resistance of Klebsiella pneumoniae and Klebsiella oxytoca in Europe (2000) (42)
- Description of Klebsiella grimontii sp. nov. (2018) (42)
- Complete Nucleotide Sequence of the First KPC-2- and SHV-12-Encoding IncX Plasmid, pKpS90, from Klebsiella pneumoniae (2012) (40)
- Liver Abscess Caused by Infection with Community-Acquired Klebsiella quasipneumoniae subsp. quasipneumoniae (2016) (40)
- In Silico Analysis of Usher Encoding Genes in Klebsiella pneumoniae and Characterization of Their Role in Adhesion and Colonization (2015) (39)
- Outbreak of Invasive Wound Mucormycosis in a Burn Unit Due to Multiple Strains of Mucor circinelloides f. circinelloides Resolved by Whole-Genome Sequencing (2018) (39)
- Molecular Epidemiology of Carbapenem Non-Susceptible Acinetobacter baumannii in France (2014) (38)
- Chromosomal size variation in Trypanosoma cruzi is mainly progressive and is evolutionarily informative (2002) (38)
- PCR-Based Identification of Klebsiella pneumoniae subsp. rhinoscleromatis, the Agent of Rhinoscleroma (2011) (37)
- Multilocus Sequence Typing Analysis of Staphylococcus lugdunensis Implies a Clonal Population Structure (2012) (37)
- Deciphering Bartonella Diversity, Recombination, and Host Specificity in a Rodent Community (2013) (37)
- Multilocus sequence analysis of the genus Citrobacter and description of Citrobacter pasteurii sp. nov. (2015) (36)
- Comparison of PFGE and multilocus sequence typing for analysis of Klebsiella pneumoniae isolates. (2008) (36)
- Development of variable number of tandem repeats typing schemes for Ralstonia solanacearum, the agent of bacterial wilt, banana Moko disease and potato brown rot. (2013) (35)
- Detection of OXA-48 Carbapenemase in the Pandemic Clone Escherichia coli O25b:H4-ST131 in the Course of Investigation of an Outbreak of OXA-48-Producing Klebsiella pneumoniae (2012) (35)
- Azole Preexposure Affects the Aspergillus fumigatus Population in Patients (2012) (34)
- Laryngeal Scleroma Associated with Klebsiella pneumoniae subsp. ozaenae (2005) (34)
- Inter-hospital outbreak of Klebsiella pneumoniae producing KPC-2 carbapenemase in Ireland. (2012) (34)
- Multilocus Microsatellite Markers for Molecular Typing of Candida glabrata: Application to Analysis of Genetic Relationships between Bloodstream and Digestive System Isolates (2010) (34)
- Klebsiella pneumoniae carriage in low-income countries: antimicrobial resistance, genomic diversity and risk factors (2020) (34)
- New Bacteriophages against Emerging Lineages ST23 and ST258 of Klebsiella pneumoniae and Efficacy Assessment in Galleria mellonella Larvae (2019) (34)
- Taxonomic status of Corynebacterium diphtheriae biovar Belfanti and proposal of Corynebacterium belfantii sp. nov. (2018) (33)
- Clinical relevance of cagA and vacA gene polymorphisms in Helicobacter pylori isolates from Senegalese patients. (2012) (33)
- AlienTrimmer removes adapter oligonucleotides with high sensitivity in short-insert paired-end reads. Commentary on Turner (2014) Assessment of insert sizes and adapter content in FASTQ data from NexteraXT libraries (2014) (32)
- Association of Alterations in ParC and GyrA Proteins with Resistance of Clinical Isolates of Enterococcus faecium to Nine Different Fluoroquinolones (1999) (32)
- Development of a multiplex PCR assay for identification of Klebsiella pneumoniae hypervirulent clones of capsular serotype K2. (2014) (30)
- Repetitive-DNA-element PCR fingerprinting and antibiotic resistance of pan-European multi-resistant Acinetobacter baumannii clone III strains. (2005) (30)
- Trypanosoma cruzi: How Many Relevant Phylogenetic Subdivisions are There? (1998) (30)
- Genomic rearrangements in trypanosomatids: an alternative to the "one gene" evolutionary hypotheses? (2000) (29)
- First Neisseria gonorrhoeae Genotyping Analysis in France: Identification of a Strain Cluster with Reduced Susceptibility to Ceftriaxone (2009) (29)
- Rapid genotyping of Achromobacter xylosoxidans, Acinetobacter baumannii, Klebsiella pneumoniae, Pseudomonas aeruginosa and Stenotrophomonas maltophilia isolates using melting curve analysis of RAPD-generated DNA fragments (McRAPD). (2011) (29)
- Description of Klebsiella spallanzanii sp. nov. and of Klebsiella pasteurii sp. nov. (2019) (29)
- Genetically Related Listeria Monocytogenes Strains Isolated from Lethal Human Cases and Wild Animals (2012) (28)
- Development of 14 minisatellite markers for the citrus canker bacterium, Xanthomonas citri pv. citri (2009) (26)
- Community-acquired meningitis caused by a CG86 hypervirulent Klebsiella pneumoniae strain: first case report in the Caribbean (2016) (25)
- Primary liver abscess due to CC23-K1 virulent clone of Klebsiella pneumoniae in France. (2012) (25)
- Description of Klebsiella spallanzanii sp. nov. and of Klebsiella pasteurii sp. nov (2019) (25)
- Description of Corynebacterium rouxii sp. nov., a novel member of the diphtheriae species complex (2019) (25)
- Severity of Escherichia coli bacteraemia is independent of the intrinsic virulence of the strains assessed in a mouse model. (2013) (25)
- Genomic analysis of endemic clones of toxigenic and non-toxigenic Corynebacterium diphtheriae in Belarus during and after the major epidemic in 1990s (2017) (24)
- Genus-wide Yersinia core-genome multilocus sequence typing for species identification and strain characterization (2019) (24)
- Circulation of pertussis and poor protection against diphtheria among middle-aged adults in 18 European countries (2020) (24)
- Core/Whole Genome Multilocus Sequence Typing and Core Genome SNP-Based Typing of OXA-48-Producing Klebsiella pneumoniae Clinical Isolates From Spain (2020) (23)
- Rapid Genomic Characterization and Global Surveillance of Klebsiella Using Pathogenwatch (2021) (23)
- “A Re-Evaluation of M. prototuberculosis”: Continuing the Debate (2006) (23)
- Population genomics and antimicrobial resistance in Corynebacterium diphtheriae (2020) (23)
- In-vivo loss of carbapenem resistance by extensively drug-resistant Klebsiella pneumoniae during treatment via porin expression modification (2017) (22)
- Phylogenetic lineages, clones and β-lactamases in an international collection of Klebsiella oxytoca isolates non-susceptible to expanded-spectrum cephalosporins. (2015) (21)
- Comparisons between two Klebsiella: The plant endophyte K. pneumoniae 342 and a clinical isolate, K. pneumoniae MGH78578 (2003) (21)
- Genomic Sequencing of Bordetella pertussis for Epidemiology and Global Surveillance of Whooping Cough (2018) (21)
- Different Factors Associated with CTX-M-Producing ST131 and Non-ST131 Escherichia coli Clinical Isolates (2013) (20)
- Correction: CRISPR Typing and Subtyping for Improved Laboratory Surveillance of Salmonella Infections (2012) (20)
- Citrobacter europaeus sp. nov., isolated from water and human faecal samples. (2017) (20)
- Metagenomic assessment of the interplay between the environment and the genetic diversification of Acinetobacter (2017) (20)
- Detection of OXA-48-like-producing Enterobacterales in Irish recreational water. (2019) (19)
- Gastrointestinal carriage of Klebsiella pneumoniae in a general adult population: a cross-sectional study of risk factors and bacterial genomic diversity (2021) (19)
- Leptospira mayottensis sp. nov., a pathogenic Leptospira species isolated from humans. (2014) (19)
- Frequent emergence of pathogenic lineages of Klebsiella pneumoniae via mobilisation of yersiniabactin and colibactin (2017) (18)
- Microbiological and clinical characteristics of bacteraemia caused by the hypermucoviscosity phenotype of Klebsiella pneumoniae in Korea (2012) (17)
- One Health or Three? Transmission modelling of Klebsiella isolates reveals ecological barriers to transmission between humans, animals and the environment (2021) (17)
- Improved quadruplex real-time PCR assay for the diagnosis of diphtheria. (2019) (17)
- A novel murine model of rhinoscleroma identifies Mikulicz cells, the disease signature, as IL-10 dependent derivatives of inflammatory monocytes (2013) (17)
- A phylogenetic analysis by multilocus enzyme electrophoresis and multiprimer random amplified polymorphic DNA fingerprinting of the Leishmania genome project Friedlin reference strain. (1999) (16)
- Molecular epidemiology of penicillin-resistant Streptococcus pneumoniae colonizing children with community-acquired pneumonia and children attending day-care centres in Fortaleza, Brazil. (2000) (16)
- Rhinoscleroma pathogenesis: The type K3 capsule of Klebsiella rhinoscleromatis is a virulence factor not involved in Mikulicz cells formation (2018) (16)
- Community-acquired infection caused by the uncommon hypervirulent Klebsiella pneumoniae ST66-K2 lineage (2020) (15)
- Comparative genomic analysis of Acinetobacter strains isolated from murine colonic crypts (2017) (15)
- Correction: Aedes albopictus Mosquito: The Main Vector of the 2007 Chikungunya Outbreak in Gabon (2009) (14)
- Multilateral benefit-sharing from digital sequence information will support both science and biodiversity conservation (2022) (14)
- Gene Composition as a Potential Barrier to Large Recombinations in the Bacterial Pathogen Klebsiella pneumoniae (2018) (14)
- A Dual Barcoding Approach to Bacterial Strain Nomenclature: Genomic Taxonomy of Klebsiella pneumoniae Strains (2021) (13)
- Ongoing diphtheria outbreak in Yemen: a cross-sectional and genomic epidemiology study. (2021) (13)
- Rare Elizabethkingia anophelis meningitis case in a Danish male (2018) (12)
- Emergence and global spread of Listeria monocytogenes main clinical clonal complex (2020) (12)
- High Prevalence of Klebsiella pneumoniae in European Food Products: a Multicentric Study Comparing Culture and Molecular Detection Methods (2021) (12)
- The speciation and hybridization history of the genus Salmonella (2019) (11)
- Pertussis epidemiology in Tunisian infants and children and characterization of Bordetella pertussis isolates: results of a 9‐year surveillance study, 2007 to 2016 (2019) (11)
- 1926-2016: 90 Years of listeriology. (2016) (11)
- Re-emergence of Corynebacterium diphtheriae. (2019) (11)
- A Point Prevalence Survey of Antibiotic Resistance in the Irish Environment, 2018-2019. (2021) (11)
- MLVA-NET--a standardised web database for bacterial genotyping and surveillance. (2008) (11)
- An MLST approach to support tracking of plasmids carrying OXA-48-like carbapenemase (2019) (11)
- Evolution of Bordetella pertussis over a 23-year period in France, 1996 to 2018 (2021) (11)
- In vitro potency of moxifloxacin, clinafloxacin and sitafloxacin against 248 genetically defined clinical isolates of Staphylococcus aureus. (2000) (11)
- Campylobacter coli cultured from the stools of a patient with immunoproliferative small intestinal disease. (2014) (10)
- Genomic evolution of the globally disseminated multidrug-resistant Klebsiella pneumoniae clonal group 147 (2021) (10)
- Population Genetic Structure of Anopheles gambiae and Anopheles arabiensis in Niger (2010) (10)
- The Global Meningitis Genome Partnership. (2020) (9)
- Expansion of European vacA and cagA alleles to East-Asian Helicobacter pylori strains in Cambodia. (2011) (9)
- Evolutionary dynamics and genomic features of the Elizabethkingia anophelis Wisconsin outbreak strain (2017) (9)
- Diagnosis in France of a Non-Toxigenic tox Gene-Bearing Strain of Corynebacterium diphtheriae in a Young Male Back From Senegal (2017) (8)
- Clonogrouping, a Rapid Multiplex PCR Method for Identification of Major Clones of Listeria monocytogenes (2015) (8)
- A large-scale genomic snapshot of Klebsiella spp. isolates in Northern Italy reveals limited transmission between clinical and non-clinical settings (2022) (8)
- The ZKIR Assay, a Real-Time PCR Method for the Detection of Klebsiella pneumoniae and Closely Related Species in Environmental Samples (2019) (8)
- Genomic background of the Klebsiella pneumoniae NDM-1 outbreak in Poland, 2012-18. (2020) (7)
- Population genomics and antimicrobial resistance in Corynebacterium diphtheriae (2020) (7)
- Characterization of an extended-spectrum class A β-lactamase from a novel enterobacterial species taxonomically related to Rahnella spp./Ewingella spp. (2013) (7)
- Complete Genome Sequences of Bordetella pertussis Clinical Isolate FR5810 and Reference Strain Tohama from Combined Oxford Nanopore and Illumina Sequencing (2018) (7)
- Population Genetic Structure of 4,12:a:− Salmonella enterica Strains from Harbor Porpoises (2012) (7)
- Reconstructed Ancestral Sequences Improve Pathogen Identification Using Resequencing DNA Microarrays (2010) (6)
- Global spatial dynamics and vaccine-induced fitness changes of Bordetella pertussis (2022) (6)
- Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov (2019) (6)
- Klebsiella MALDI TypeR: a web-based tool for Klebsiella identification based on MALDI-TOF mass spectrometry. (2021) (6)
- Determining Factors for Pertussis Vaccination Policy: A Study in Five EU Countries (2019) (6)
- Erratum to "Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov." [Res Microbiol 170 (3) (2019) 165-170]. (2019) (6)
- Multilocus VNTR analysis of Mycobacterium ulcerans strains isolated in Côte d'Ivoire. (2011) (6)
- Effect of change in vaccine schedule on pertussis epidemiology in France: a modelling and serological study. (2021) (6)
- Carriage of a Single Strain of Nontoxigenic Corynebacterium diphtheriae bv. Belfanti (Corynebacterium belfantii) in Four Patients with Cystic Fibrosis (2019) (6)
- Bordetella parapertussis Bacteremia: Clinical Expression and Bacterial Genomics (2019) (6)
- Klebsiella MALDI TypeR: a web-based tool for Klebsiella identification based on MALDI-TOF mass spectrometry (2020) (5)
- Characterization of Klebsiella pneumoniae isolates from a mother-child cohort in Madagascar. (2020) (5)
- Patterns of selection on Plasmodium falciparum erythrocyte‐binding antigens after the colonization of the New World (2014) (5)
- Draft Genome Sequence of Campylobacter coli Strain IPSID-1 Isolated from a Patient with Immunoproliferative Small Intestinal Disease (2014) (5)
- Development of a multiplex PCR assay for identification of Klebsiella pneumoniae hypervirulent clones of capsular serotype K 2 (2014) (5)
- Corrigendum to “Phylogenetic diversity of bat trypanosomes of subgenus Schizotrypanum based on multilocus enzyme electrophoresis, random amplified polymorphic DNA, and cytrochrome b nucleotide sequence analyses” [Inf. Gen. Evol. 2 (2003) 201–208] (2003) (5)
- Ribotyping in Clinical Microbiology (2005) (5)
- Recombining population structure of the Enterobacteriaceae 1 Plesiomonas shigelloides revealed by multilocus sequence typing 2 3 4 (2007) (4)
- Resequencing Microarray Technology for Genotyping Human Papillomavirus in Cervical Smears (2014) (4)
- Application of whole genome sequencing to query a potential outbreak of Elizabethkingia anophelis in Ontario, Canada (2019) (4)
- Erratum: Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity (2017) (4)
- Occurrence and spread of SHV extended-spectrum beta-lactamase-producing Klebsiella pneumoniae isolates in Curacao. (2003) (4)
- Psychrobacter pasteurii and Psychrobacter piechaudii sp. nov., two novel species within the genus Psychrobacter. (2017) (4)
- Association between the COVID-19 pandemic and pertussis in France using multiple nationwide data sources (2021) (4)
- Gastrointestinal carriage of Klebsiella pneumoniae in a general adult population in Norway: a cross-sectional study of risk factors and bacterial genomic diversity (2021) (4)
- Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae (2021) (4)
- Epidemiological, clinical and genomic insights into the ongoing diphtheria outbreak in Yemen (2020) (4)
- Population Genetic Structure ofAnopheles gambiaeandAnopheles arabiensisin Niger (2010) (4)
- Chikungunya outbreaks. (2007) (3)
- [Evolutionary history of Salmonella Typhi illustrates a new pattern of epidemiologic dynamics]. (2007) (3)
- Correction: Multilocus Sequence Typing as a Replacement for Serotyping in Salmonella enterica (2020) (3)
- Genome of Superficieibacter maynardsmithii, a novel, antibiotic susceptible representative of Enterobacteriaceae (2021) (3)
- High-Resolution Typing of Staphylococcus epidermidis Based on Core Genome Multilocus Sequence Typing To Investigate the Hospital Spread of Multidrug-Resistant Clones (2020) (3)
- Characterization of Klebsiella pneumoniae isolated from patients suspected of pulmonary or bubonic plague during the Madagascar epidemic in 2017 (2021) (3)
- A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies (2022) (3)
- Infectious diseases and the golden age of phylogenetics: an E-debate. (2001) (3)
- Elizabethkingia anophelis meningitis in a traveler returning from the Americas. (2020) (3)
- Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae (2022) (3)
- Association between the COVID-19 pandemic and pertussis derived from multiple nationwide data sources, France, 2013 to 2020 (2022) (3)
- Impact of Vaccine Schedule Change on Pertussis Epidemiology in France: A Modelling and Serological Study (2021) (3)
- Detection of Klebsiella pneumoniae human gut carriage: a comparison of culture, qPCR, and whole metagenomic sequencing methods (2022) (3)
- In Vitro and In Vivo Assessments of Two Newly Isolated Bacteriophages against an ST13 Urinary Tract Infection Klebsiella pneumoniae (2022) (3)
- Leakiness at the human-animal interface in Southeast Asia and implications for the spread of antibiotic resistance (2021) (2)
- Low Detection Rate of Bordetella pertussis Using the BioFire FilmArray Respiratory Panel 2plus (2020) (2)
- Is it the same strain? Defining genomic epidemiology thresholds tailored to individual outbreaks (2022) (2)
- Six Groups of the OXY (cid:2) -Lactamase Evolved over Millions of Years in Klebsiella oxytoca (2005) (2)
- Erratum: Global phylogeography and evolutionary history of Shigella dysenteriae type 1 (2016) (2)
- Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae (2018) (2)
- Microbial molecular markers and epidemiological surveillance in the era of high throughput sequencing: an update from the IMMEM-10 conference (2014) (2)
- Dissemination of Klebsiella pneumoniae ST147 NDM-1 in Poland, 2015-19. (2021) (2)
- Genome characteristics of Bordetella pertussis isolates from Tunisia. (2019) (2)
- Correction: Genus-wide Leptospira core genome multilocus sequence typing for strain taxonomy and global surveillance (2020) (2)
- Spatial dynamics and vaccine-induced fitness changes of Bordetella pertussis (2021) (2)
- Corynebacterium diphtheriae Infection in Mahajanga, Madagascar: First Case Report. (2020) (2)
- Comparative phylogenomics of ESBL-, AmpC- and carbapenemase-producing Klebsiella pneumoniae originating from companion animals and humans (2022) (2)
- Identification of Klebsiella pneumoniae complex members using MALDI-TOF mass spectrometry (2018) (2)
- In vitro and in silico parameters for precise cgMLST typing of Listeria monocytogenes (2022) (2)
- Transmission of Klebsiella strains and plasmids within and between grey‐headed flying fox colonies (2021) (2)
- Carriage of a single strain of non-toxigenic Corynebacterium diphtheriae biovar Belfanti (Corynebacterium belfantii) in four patients with cystic fibrosis (2019) (2)
- Author Correction: Hypervirulent Listeria monocytogenes clones’ adaptation to mammalian gut accounts for their association with dairy products (2019) (2)
- Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination (2018) (2)
- Phages against non-capsulated Klebsiella pneumoniae: broader host range, slower resistance (2022) (2)
- A curated collection of Klebsiella metabolic models reveals variable substrate usage and gene essentiality (2021) (2)
- Exploring the diversity of Listeria monocytogenes biofilm architecture by high-1 throughput confocal laser scanning microscopy : predominance of honeycomb-like 2 morphotype 3 4 (2014) (2)
- Cutaneous diphtheria: three case-reports to discuss determinants of re-emergence in resource-rich settings (2021) (1)
- Evaluation of de novo assemblies in view of creating automated pipelines dedicated to core-genome bacterial typing (2017) (1)
- , Jan Verhoef , Alex Van Complex cepacia Burkholderia Identification of Isolates of the and VITEK 2 Automated Instruments for Comparative Evaluation of the BD Phoenix (2002) (1)
- O147 Precise identification and phylogenetic relationships of major multi-resistant clones of Acinetobacter baumannii by multilocus sequence typing (2007) (1)
- Klebsiella pneumoniae with capsule type K64 is overrepresented among invasive disease in Vietnam (2021) (1)
- Trypanosoma cruzi , the agent of Chagas' disease : it is clonal at microevolutionary level? : epidemiological implications (1996) (1)
- Spontaneous and post-surgical/traumatic Klebsiella pneumoniae meningitis: two distinct clinic-microbiological entities. (2021) (1)
- Multidrug-resistant toxigenic Corynebacterium diphtheriae sublineage 453 with two novel resistance genomic islands (2023) (1)
- Genomic epidemiology and strain taxonomy of Corynebacterium diphtheriae. (2021) (1)
- Comparative analysis of Klebsiella pneumoniae genomes identifies a phospholipase D family protein as a novel virulence factor (2014) (1)
- Optimization and validation of a quadruplex real-time PCR assay for the diagnosis of diphtheria (2019) (1)
- Pertussis surveillance results from a French general practitioner network, France, 2017 to 2020 (2022) (0)
- Detection of Klebsiella pneumoniae and closely related species by real-time PCR with the ZKIR system v2 (2019) (0)
- Genomic library of Bordetella (2022) (0)
- Population Staphylococcus aureus Gene Is Widely Disseminated in mecA (2002) (0)
- Genomic analysis of endemic clones of toxigenic and non-toxigenic Corynebacterium diphtheriae in Belarus during and after the major epidemic in 1990s (2017) (0)
- Detection of Klebsiella pneumoniae and closely related species by real-time PCR with the ZKIR system v3 (2019) (0)
- Corynebacteria of the diphtheriae Species Complex in Companion Animals: Clinical and Microbiological Characterization of 64 Cases from France (2023) (0)
- MLST for Listeria monocytogenes clone identification and (2013) (0)
- Porpoisesenterica Strains from Harbor - Population Genetic Structure of 4,12:a: (2012) (0)
- hydroxylase expression in malignant and normal colon tissue from eight participants (2001) (0)
- Genome-wide mosaicism within Mycobacterium abscessus: evolutionary and epidemiological implications (2016) (0)
- A global Corynebacterium diphtheriae genomic framework sheds light on current diphtheria reemergence (2023) (0)
- In vitro and in silico parameters for precise cgMLST typing of Listeria monocytogenes (2022) (0)
- Corrigendum: Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity (2017) (0)
- Corynebacterium of the diphtheriae complex in companion animals: clinical and microbiological characterization of 64 cases from France (2023) (0)
- Hypervirulent Listeria monocytogenes clones’ adaption to mammalian gut accounts for their association with dairy products (2019) (0)
- Revisiting the taxonomy of the genus Elizabethkingia using whole-genome sequencing, optical mapping, and MALDI-TOF, along with proposal of three novel Elizabethkingia species: Elizabethkingia bruuniana sp. nov., Elizabethkingia ursingii sp. nov., and Elizabethkingia occulta sp. nov. (2017) (0)
- Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity (2016) (0)
- Isolation of bacteriophages against Klebsiella pneumoniae and in vivo activity (2016) (0)
- In-vivo loss of carbapenem resistance by extensively drug-resistant Klebsiella pneumoniae during treatment via porin expression modification (2017) (0)
- Klebsiella pneumoniae from humans, animals and the environment in Guadeloupe: first insights into genomic (2019) (0)
- Population Genetic Structure of 4,12:a: (cid:1) Salmonella enterica Strains from Harbor Porpoises (2012) (0)
- Phenotypic and genotypic characteristics of Listeria monocytogenes strains isolated 1 during 2011-2014 from different food matrices in Switzerland 2 3 (2018) (0)
- Isolation of Klebsiella strains from human or animal fecal material v1 (2019) (0)
- pKpS90, from Klebsiella pneumoniae Plasmid, KPC-2- and SHV-12-Encoding IncX Complete Nucleotide Sequence of the First (2014) (0)
- Defining genomic epidemiology thresholds for common-source bacterial outbreaks: a modelling study (2023) (0)
- An Integrated View on Listeria Genomics and Virulence (2016) (0)
- Identification of the different phylogroups from the Klebsiella pneumoniae species complex by real-time PCR v1 (2022) (0)
- An optimized MLVA assay and its complementarity with PFGE and 1 MLST for Listeria monocytogenes clone identification and 2 surveillance 3 4 (2013) (0)
- Genomic Epidemiology of Corynebacterium diphtheriae in New Caledonia (2022) (0)
- Reclassification of Xanthomonads associated with anacardiaceae into two species and three pathovars (2008) (0)
- Serotypes of Klebsiella pneumoniae Virulence Factors and K1/K2 Capsular Multiplex PCR for Detection of Seven (2014) (0)
- Comparative genomic analysis of Acinetobacter strains isolated from murine colonic crypts (2017) (0)
- The population structure of Aspergillus fumigatus clinical isolates: Role of azole drugs in selecting less-susceptible clonal complexes (2011) (0)
- Limited Transmission of Klebsiella pneumoniae among Humans, Animals, and the Environment in a Caribbean Island, Guadeloupe (French West Indies) (2022) (0)
- Outbreak of invasive wound mucormycosis in a burn unit due to multiple strains of Mucor circinelloides f. circinelloides resolved by whole genome sequencing (2017) (0)
- Implementation of the Galleria mellonella larvae model to evaluate phage therapy against Klebsiella pneumoniae (2017) (0)
- Corynebacterium ulcerans as filamentous branching rods. (2022) (0)
- Non-toxigenic Corynebacterium diphtheriae in hallux ulceration. (2022) (0)
- Chapter 169 – Enterobacteriaceae (2010) (0)
- Multiplex PCR for the detection of seven virulence factors and K1/K2 capsular 1 of pneumoniae (2014) (0)
- Whole genome-based population biology 1 and epidemiological surveillance 2 of Listeria monocytogenes 3 4 5 (2016) (0)
- Genetic structure and evolution of Trypanosoma cruzi , the agent of Chagas disease, as revealed by multiprimer RAPD analysis : clonality vs sexuality (1996) (0)
- Ancient Clonal Groups monocytogenes Are Widespread and ''Epidemic Clones'' of Listeria (2014) (0)
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What Schools Are Affiliated With Sylvain Brisse?
Sylvain Brisse is affiliated with the following schools:
