Tandy Warnow | Academic Influence

Tandy Warnow's AcademicInfluence.com Rankings

Tandy Warnow

Computer Science

#3273

World Rank

#3430

Historical Rank

#1274

USA Rank

Database

#2414

World Rank

#2529

Historical Rank

#526

USA Rank

computer-science Degrees

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Computer Science

Tandy Warnow's Degrees

PhD Computer Science University of California, Berkeley
Masters Computer Science University of California, Berkeley
Bachelors Mathematics University of California, Berkeley

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According to Wikipedia, Tandy Warnow is an American computer scientist and Grainger Distinguished Chair in Engineering at the University of Illinois at Urbana–Champaign. She is known for her work on the reconstruction of evolutionary trees, both in biology and in historical linguistics, and also for multiple sequence alignment methods.

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Tandy Warnow's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Whole-genome analyses resolve early branches in the tree of life of modern birds (2014) (1515)
Phylotranscriptomic analysis of the origin and early diversification of land plants (2014) (966)
ASTRAL: genome-scale coalescent-based species tree estimation (2014) (876)
ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes (2015) (762)
Chemical Phylogenetics of Histone Deacetylases (2010) (653)
Towards complete and error-free genome assemblies of all vertebrate species (2020) (557)
One thousand plant transcriptomes and the phylogenomics of green plants (2019) (550)
Rapid and Accurate Large-Scale Coestimation of Sequence Alignments and Phylogenetic Trees (2009) (484)
Data access for the 1,000 Plants (1KP) project (2014) (474)
SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees. (2012) (334)
PASTA: Ultra-Large Multiple Sequence Alignment for Nucleotide and Amino-Acid Sequences (2015) (316)
Indo‐European and Computational Cladistics (2002) (269)
Evaluating Summary Methods for Multilocus Species Tree Estimation in the Presence of Incomplete Lineage Sorting. (2016) (230)
Two Strikes Against Perfect Phylogeny (1992) (229)
Statistical binning enables an accurate coalescent-based estimation of the avian tree (2014) (218)
Phylogenetic networks (2004) (198)
Disk-Covering, a Fast-Converging Method for Phylogenetic Tree Reconstruction (1999) (197)
A perspective on 16S rRNA operational taxonomic unit clustering using sequence similarity (2016) (195)
A few logs suffice to build (almost) all trees (l): part I (1997) (186)
Phylogenetic networks: modeling, reconstructibility, and accuracy (2004) (186)
RAxML and FastTree: Comparing Two Methods for Large-Scale Maximum Likelihood Phylogeny Estimation (2011) (184)
Perfect Phylogenetic Networks: A New Methodology for Reconstructing the Evolutionary History of Natural Languages (2005) (178)
A Few Logs Suffice to Build (almost) All Trees: Part II (1999) (173)
Reconstructing reticulate evolution in species: theory and practice (2004) (171)
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference (2016) (169)
A few logs suffice to build (almost) all trees (I) (1999) (164)
ASTRID: Accurate Species TRees from Internode Distances (2015) (161)
SEPP: SATe -Enabled Phylogenetic Placement (2011) (152)
A New Implmentation and Detailed Study of Breakpoint Analysis (2000) (147)
New approaches for reconstructing phylogenies from gene order data (2001) (146)
To include or not to include: The impact of gene filtering on species tree estimation methods (2017) (145)
Naive binning improves phylogenomic analyses (2013) (143)
A robust model for finding optimal evolutionary trees (1993) (142)
On the Robustness to Gene Tree Estimation Error (or lack thereof) of Coalescent-Based Species Tree Methods. (2015) (135)
A comparative study of SVDquartets and other coalescent-based species tree estimation methods (2015) (130)
Kaikoura Tree Theorems: Computing the Maximum Agreement Subtree (1993) (130)
Constructing a Tree from Homeomorphic Subtrees, with Applications to Computational Evolutionary Biology (1996) (126)
Steps toward accurate reconstructions of phylogenies from gene-order data (2002) (125)
Computational Phylogenetics: An Introduction to Designing Methods for Phylogeny Estimation (2017) (111)
An Empirical Comparison of Phylogenetic Methods on Chloroplast Gene Order Data in Campanulaceae (2000) (106)
Tutorial on Computational Linguistic Phylogeny (2008) (105)
Weighted Statistical Binning: Enabling Statistically Consistent Genome-Scale Phylogenetic Analyses (2014) (105)
Ultra-large alignments using phylogeny-aware profiles (2015) (103)
A fast algorithm for the computation and enumeration of perfect phylogenies when the number of character states is fixed (1995) (102)
Triangulating vertex colored graphs (1994) (94)
Inferring evolutionary history from DNA sequences (1990) (89)
Rec-I-DCM3: A Fast Algorithmic Technique for Reconstructing Large Phylogenetic Trees (2004) (87)
Rec-I-DCM3: a fast algorithmic technique for reconstructing phylogenetic trees (2004) (83)
TIPP: taxonomic identification and phylogenetic profiling (2014) (83)
Algorithms for MDC-Based Multi-Locus Phylogeny Inference: Beyond Rooted Binary Gene Trees on Single Alleles (2011) (78)
PASTA: Ultra-Large Multiple Sequence Alignment (2014) (77)
Statistically based postprocessing of phylogenetic analysis by clustering (2002) (77)
The Asymmetric Median Tree - A New Model for Building Consensus Trees (1996) (77)
SuperFine: fast and accurate supertree estimation. (2012) (74)
Performance study of phylogenetic methods: (unweighted) quartet methods and neighbor-joining (2001) (74)
Towards the Development of Computational Tools for Evaluating Phylogenetic Network Reconstruction Methods (2002) (74)
The Impact of Multiple Protein Sequence Alignment on Phylogenetic Estimation (2011) (74)
A comparison of phylogenetic reconstruction methods on an Indo‐European dataset (2005) (74)
MRL and SuperFine+MRL: new supertree methods (2012) (73)
Long‐Branch Attraction in Species Tree Estimation: Inconsistency of Partitioned Likelihood and Topology‐Based Summary Methods (2018) (72)
Reconstructing phylogenies from gene-content and gene-order data (2007) (72)
Tree compatibility and inferring evolutionary history (1994) (71)
Mathematical approaches to comparative linguistics. (1997) (69)
Phylogenomic analyses data of the avian phylogenomics project (2015) (69)
The development and application of bioinformatics core competencies to improve bioinformatics training and education (2018) (68)
Designing fast converging phylogenetic methods (2001) (67)
Distance-Based Genome Rearrangement Phylogeny (2006) (67)
Estimating true evolutionary distances between genomes (2001) (65)
High-Performance Algorithm Engineering for Computational Phylogenetics (2001) (64)
Solving Large Scale Phylogenetic Problems using DCM2 (1999) (62)
Phylogenomic species tree estimation in the presence of incomplete lineage sorting and horizontal gene transfer (2015) (62)
Misunderstood parameter of NCBI BLAST impacts the correctness of bioinformatics workflows (2018) (61)
A New Fast Heuristic for Computing the Breakpoint Phylogeny and Experimental Phylogenetic Analyses of Real and Synthetic Data (2000) (59)
Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA). (2006) (58)
Multiple sequence alignment: a major challenge to large-scale phylogenetics (2011) (57)
Absolute convergence: true trees from short sequences (2001) (57)
Sequence-Length Requirements for Phylogenetic Methods (2002) (56)
An experimental study comparing linguistic phylogenetic reconstruction methods (2013) (54)
Reconstructing Reticulate Evolution in SpeciesTheory and Practice (2005) (54)
Performance of Supertree Methods on Various Data Set Decompositions (2004) (52)
Determining the Evolutionary Tree Using Experiments (1996) (52)
The performance of coalescent-based species tree estimation methods under models of missing data (2018) (51)
An experimental study of Quartets MaxCut and other supertree methods (2010) (51)
Concatenation Analyses in the Presence of Incomplete Lineage Sorting (2015) (50)
The hardness of perfect phylogeny, feasible register assignment and other problems on thin colored graphs (2000) (50)
Computing the local consensus of trees (1995) (50)
Constructing Big Trees from Short Sequences (1997) (50)
Phylogenomics from Whole Genome Sequences Using aTRAM (2017) (50)
Fast and accurate methods for phylogenomic analyses (2011) (49)
FASTSP: linear time calculation of alignment accuracy (2011) (49)
Response to Comment on “Whole-genome analyses resolve early branches in the tree of life of modern birds” (2015) (47)
BBCA: Improving the scalability of *BEAST using random binning (2014) (46)
The Effect of the Guide Tree on Multiple Sequence Alignments and Subsequent Phylogenetic Analysis (2007) (45)
Reconstructing the evolutionary history of natural languages (1996) (44)
Fast Phylogenetic Methods for the Analysis of Genome Rearrangement Data: An Empirical Study (2001) (42)
The Accuracy of Fast Phylogenetic Methods for Large Datasets (2001) (42)
DACTAL: divide-and-conquer trees (almost) without alignments (2012) (41)
Primates, Lice and Bacteria: Speciation and Genome Evolution in the Symbionts of Hominid Lice (2017) (41)
A simulation study comparing supertree and combined analysis methods using SMIDGen (2009) (41)
A STOCHASTIC MODEL OF LANGUAGE EVOLUTION THAT INCORPORATES HOMOPLASY AND BORROWING (2005) (40)
Disk covering methods improve phylogenomic analyses (2014) (39)
Advances in phylogeny reconstruction from gene order and content data. (2005) (39)
Better Hill-Climbing Searches for Parsimony (2003) (38)
Barking Up The Wrong Treelength: The Impact of Gap Penalty on Alignment and Tree Accuracy (2009) (38)
Short Quartet Puzzling: A New Quartet-Based Phylogeny Reconstruction Algorithm (2008) (38)
FastRFS: fast and accurate Robinson-Foulds Supertrees using constrained exact optimization (2016) (36)
Parsimony is Hard to Beat (1997) (36)
Better methods for solving parsimony and compatibility (1998) (36)
Estimating Optimal Species Trees from Incomplete Gene Trees Under Deep Coalescence (2012) (35)
Pattern Identification in Biogeography (2005) (34)
Finding a Maximum Compatible Tree for a Bounded Number of Trees with Bounded Degree Is Solvable in Polynomial Time (2001) (33)
Standard maximum likelihood analyses of alignments with gaps can be statistically inconsistent (2012) (32)
Network (Reticulated) Evolution: Biology, Models, and Algorithms (2004) (32)
Local Quartet Splits of a Binary Tree Infer All Quartet Splits Via One Dyadic Inference Rule (1996) (32)
Minimizing Phylogenetic Number To Find Good Evolutionary Trees (1995) (31)
An Overview of Phylogeny Reconstruction (2005) (31)
SVDquest: Improving SVDquartets species tree estimation using exact optimization within a constrained search space. (2018) (29)
A roadmap for global synthesis of the plant tree of life. (2018) (29)
Simultaneous radiation of bird and mammal lice following the K-Pg boundary (2018) (29)
Inferring Optimal Species Trees Under Gene Duplication and Loss (2012) (28)
Triangulating 3-Colored Graphs (1992) (28)
Algorithms for MDC-Based Multi-locus Phylogeny Inference (2011) (28)
A detailed study of breakpoint analysis (2001) (27)
Polynomial-Time Statistical Estimation of Species Trees under Gene Duplication and Loss (2019) (27)
Determining the evolutionary tree (1990) (27)
Obtaining highly accurate topology estimates of evolutionary trees from very short sequences (1999) (27)
Triangulating three-colored graphs (1991) (27)
Hybrid tree reconstruction methods (1999) (27)
Reconstructing Optimal Phylogenetic Trees: A Challenge in Experimental Algorithmics (2000) (26)
INFERENCE OF DIVERGENCE TIMES AS A STATISTICAL INVERSE PROBLEM (2004) (26)
Why sequence all eukaryotes? (2022) (25)
Large-Scale Multiple Sequence Alignment and Phylogeny Estimation (2013) (25)
Constructing evolutionary trees in the presence of polymorphic characters (1996) (24)
Phylogenomics using Target‐Restricted Assembly Resolves Intrageneric Relationships of Parasitic Lice (Phthiraptera: Columbicola) (2017) (23)
Large-scale multiple sequence alignment and tree estimation using SATé. (2014) (23)
MAGUS: Multiple sequence Alignment using Graph clUStering (2020) (23)
Tree Reconstruction from Partial Orders (1993) (22)
FastMulRFS: fast and accurate species tree estimation under generic gene duplication and loss models (2019) (22)
A Comparison of Phylogenetic Reconstruction Methods on an IE Dataset (2004) (22)
Fast Phylogenetic Methods For Genome Rearrangement Evolution: An Empirical Study (2002) (21)
Evaluating Statistical Multiple Sequence Alignment in Comparison to Other Alignment Methods on Protein Data Sets (2018) (21)
The Performance of Phylogenetic Methods on Trees of Bounded Diameter (2001) (20)
Gene tree parsimony for incomplete gene trees: addressing true biological loss (2018) (20)
Applying, Evaluating and Refining Bioinformatics Core Competencies (An Update from the Curriculum Task Force of ISCB’s Education Committee) (2016) (20)
Combinatorial algorithms for constructing phylogenetic trees (1992) (19)
New approaches for reconstructing phylogenies based on gene order (2001) (19)
Hen's Teeth and Whale's Feet: Generalized Characters and Their Compatibility (1995) (19)
Analyzing the Order of Items in Manuscripts of The Canterbury Tales (2003) (18)
Phylogeny Estimation Given Sequence Length Heterogeneity (2020) (18)
Supertree Construction: Opportunities and Challenges (2018) (17)
A new fast heuristic for computing the breakpoint phylogeny and a phylogenetic analysis of a group of highly rearranged chloroplast genomes (2000) (17)
Parallelizing SuperFine (2012) (17)
Statistically consistent divide-and-conquer pipelines for phylogeny estimation using NJMerge (2018) (16)
High diversity of picornaviruses in rats from different continents revealed by deep sequencing (2016) (15)
Scaling statistical multiple sequence alignment to large datasets (2016) (15)
On contract-and-refine transformations between phylogenetic trees (2004) (15)
HIPPI: highly accurate protein family classification with ensembles of HMMs (2016) (15)
Unidentifiable divergence times in rates-across-sites models (2004) (15)
Approximating the Complement of the Maximum Compatible Subset of Leaves of k Trees (2002) (15)
Large-scale phylogenetic analysis (2003) (14)
Constructing phylogenetic trees efficiently using compatibility criteria (1993) (14)
Toward new software for computational phylogenetics (2002) (14)
NJMerge: A Generic Technique for Scaling Phylogeny Estimation Methods and Its Application to Species Trees (2018) (13)
TIPP2: metagenomic taxonomic profiling using phylogenetic markers (2021) (12)
Algorithmic techniques for improving the speed and accuracy of phylogenetic methods (2004) (12)
A Few Logs Suuce to Build Almost All Trees Ii (1997) (11)
Character-Based Reconstruction of a Linguistic Cladogram (2000) (11)
OCTAL: Optimal Completion of gene trees in polynomial time (2018) (11)
TreeMerge: a new method for improving the scalability of species tree estimation methods (2019) (11)
Standard maximum likelihood analyses of alignments with gaps can be statistically inconsistent. (2012) (10)
Estimating Large Distances in Phylogenetic Reconstruction (1999) (10)
Multiple sequence alignment: a major challenge to large-scale phylogenetics. (2010) (10)
MAGUS+eHMMs: improved multiple sequence alignment accuracy for fragmentary sequences (2021) (10)
The Short Quartet Method (1998) (10)
Re-evaluating Deep Neural Networks for Phylogeny Estimation: The Issue of Taxon Sampling (2022) (9)
Multispecies Coalescent: Theory and Applications in Phylogenetics (2021) (9)
Viewing computer science through citation analysis: Salton and Bergmark Redux (2019) (9)
DISCO: Species Tree Inference using Multicopy Gene Family Tree Decomposition (2021) (9)
Co-citations in context: Disciplinary heterogeneity is relevant (2019) (8)
FASTRAL: improving scalability of phylogenomic analysis (2021) (8)
Divide-and-Conquer Tree Estimation: Opportunities and Challenges (2019) (8)
Treelength Optimization for Phylogeny Estimation (2012) (8)
Response to Comment on “Statistical binning enables an accurate coalescent-based estimation of the avian tree” (2015) (8)
Scalable and Accurate Phylogenetic Placement Using pplacer-XR (2021) (7)
Algorithms in Bioinformatics, 9th International Workshop, WABI 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings (2009) (7)
Of Chicken Teeth and Mouse Eyes, or Generalized Character Compatibility (1995) (7)
New Software for Computational Phylogenetics (2002) (7)
Constrained incremental tree building: new absolute fast converging phylogeny estimation methods with improved scalability and accuracy (2019) (7)
Constrained incremental tree building: new absolute fast converging phylogeny estimation methods with improved scalability and accuracy (2018) (7)
Absolute phylogeny: true trees from short sequences (2001) (7)
Profile Hidden Markov Models Are Not Identifiable (2019) (7)
RH : Evaluating species tree methods for ILS Evaluating summary methods for multi-locus species tree estimation in the presence of incomplete lineage sorting (2014) (7)
Disjoint Tree Mergers for Large-Scale Maximum Likelihood Tree Estimation (2021) (6)
Finding scientific communities in citation graphs: Articles and authors (2020) (6)
Unblended disjoint tree merging using GTM improves species tree estimation (2019) (6)
PASTA for proteins (2018) (6)
NJst and ASTRID are not statistically consistent under a random model of missing data (2020) (6)
Using INC Within Divide-and-Conquer Phylogeny Estimation (2019) (5)
SATe-Enabled Phylogenetic Placement (2013) (5)
Algorithms and heuristics for combinatorial optimization in phylogeny (2006) (5)
Phylogenetic Tree Construction (2007) (5)
SCAMPP: Scaling Alignment-Based Phylogenetic Placement to Large Trees (2022) (5)
Some combinatorial optimization problems in phylogenetics (1999) (5)
ppIacerDC: a new scalable phylogenetic placement method (2021) (5)
Optimal Completion of Incomplete Gene Trees in Polynomial Time Using OCTAL (2017) (5)
Estimating the Deviation from a Molecular Clock (2002) (5)
FastMulRFS: Statistically consistent polynomial time species tree estimation under gene duplication (2019) (4)
Large-scale Species Tree Estimation (2019) (4)
High-Performance Algorithm Engineering for Gene-Order Phylogenies (4)
Benchmark datasets and software for developing and testing methods for large-scale multiple sequence alignment and phylogenetic inference (2010) (4)
Next Generation Sequencing (Dagstuhl Seminar 16351) (2016) (4)
Revisiting Evaluation of Multiple Sequence Alignment Methods. (2021) (3)
Faculty Opinions recommendation of Skmer: assembly-free and alignment-free sample identification using genome skims. (2019) (3)
SIESTA: enhancing searches for optimal supertrees and species trees (2018) (3)
An Empirical Comparison Between BPAnalysis and MPBE on the Campanulaceae Chloroplast Genome Dataset (2006) (3)
Greedy Strict-Consensus Merger : A New Method to Combine Multiple Phylogenetic Trees (2010) (3)
TRACTION: Fast Non-Parametric Improvement of Estimated Gene Trees (2019) (3)
WITCH: Improved Multiple Sequence Alignment Through Weighted Consensus Hidden Markov Model Alignment (2022) (3)
Using Constrained-INC for Large-Scale Gene Tree and Species Tree Estimation (2020) (3)
Multiple sequence alignment: a major challenge to large-scale phylogenetics. (2010) (3)
UPP2: Fast and Accurate Alignment Estimation of Datasets with Fragmentary Sequences (2022) (3)
Proceedings of the 9th annual international conference on Computing and combinatorics (2003) (2)
Quintet Rooting: rooting species trees under the multi-species coalescent model (2022) (2)
The Maximum Weight Trace Alignment Merging Problem (2021) (2)
Supplementary Materials , Naive Binning Improves Phylogenomic Analyses (2013) (2)
Center–periphery structure in research communities (2022) (2)
Reconstructing Chromosomal Evolution (2006) (2)
Gene Tree Parsimony for Incomplete Gene Trees (2017) (2)
An analytical upper bound on the number of loci required for all splits of a species tree to appear in a set of gene trees (2016) (2)
Phylogenetic analyses of alignments with gaps (2011) (2)
Frequently cocited publications: Features and kinetics (2020) (2)
Benchmarking Statistical Multiple Sequence Alignment (2018) (2)
Bioinformatics and Phylogenetics (2019) (2)
Recent progress on methods for estimating and updating large phylogenies (2021) (2)
Inferring Evolutionary History from DNA Sequences (Extended Abstract) (1990) (2)
Using INC within Divide-and-Conquer Phylogeny Estimation - Datasets (2019) (2)
Computational Challenges in Constructing the Tree of Life (2017) (2)
Non-parametric correction of estimated gene trees using TRACTION (2020) (2)
Scalable Species Tree Inference with External Constraints (2021) (2)
AOC: Assembling overlapping communities (2022) (1)
Textbook for 394 C : Algorithms for Computational Biology (2012) (1)
Disk covering methods improve phylogenomic analyses (2014) (1)
Sequence analysis TIPP: taxonomic identification and phylogenetic profiling (2014) (1)
Datasets from the study: Optimal completion of incomplete gene trees in polynomial time using OCTAL (2017) (1)
BATCH-SCAMPP: Scaling phylogenetic placement methods to place many sequences (2022) (1)
DISCO+QR: rooting species trees in the presence of GDL and ILS (2023) (1)
UPP2: fast and accurate alignment of datasets with fragmentary sequences (2023) (1)
Running Head: SUPERFINE Title: SuperFine: Fast and Accurate Supertree Estimation (2011) (1)
BBCA: Improving the scalability of *BEAST using random binning (2014) (1)
Trees in the Presence of Polymorphic Characters (1995) (1)
Phylogenomic species tree estimation in the presence of incomplete lineage sorting and horizontal gene transfer (2015) (1)
Designing Methods for Large-Scale Phylogeny Estimation (2017) (1)
Data from TRACTION: Fast non-parametric improvement of estimated gene trees (2019) (1)
Improving supertree estimation using Quartets MaxCut (2009) (1)
Large-Scale Multiple Sequence Alignment and the Maximum Weight Trace Alignment Merging Problem. (2022) (1)
A comparative study of SVDquartets and other coalescent-based species tree estimation methods (2015) (1)
Enhancing Searches for Optimal Trees Using SIESTA (2017) (1)
HMMerge: an Ensemble Method for Improving Multiple Sequence Alignment (2022) (1)
Correction to: The performance of coalescent-based species tree estimation methods under models of missing data (2020) (1)
Supplementary Online Material, PASTA: ultra-large multiple sequence alignment (2014) (1)
Are Profile Hidden Markov Models Identifiable? (2018) (1)
Comparing Methods for Species Tree Estimation With Gene Duplication and Loss (2021) (1)
Proceedings of the 9th international conference on Algorithms in bioinformatics (2009) (1)
ISMB 2014 Proceedings Papers Committee (2014) (1)
Tree Alignment (2008) (1)
ASTRID: Accurate Species TRees from Internode Distances (2015) (1)
Advancing Divide-and-Conquer Phylogeny Estimation using Robinson-Foulds Supertrees (2020) (1)
Inferring evolutionary trees from polymorphic characters, and an analysis of the Indo-European family of languages (1996) (1)
Better methods for solving parsimony and compatibility. (1998) (1)
Introduction to Computational Phylogenetics (2013) (1)
Multiple sequence alignment: a major challenge to large-scale (2010) (1)
Accurate large-scale phylogeny-aware alignment using BAli-Phy (2021) (1)
OCTAL: Optimal Completion of gene trees in polynomial time (2018) (1)
Ultra-Large Alignments Using Ensembles of Hidden Markov Models (2015) (1)
PASTA For Proteins Data (BALiBASE) (2018) (0)
Faculty Opinions recommendation of Reversible polymorphism-aware phylogenetic models and their application to tree inference. (2017) (0)
Bin Definition for Super Gene Trees for Mirarab et. al. (2014) (0)
SALMA: Scalable ALignment using MAFFT-Add (2022) (0)
Constructing Trees from True Subtrees (2017) (0)
Genome-scale Estimation of the Tree of Life (2017) (0)
3 Key Result (2008) (0)
Well-Connected Communities in Real-World Networks (2023) (0)
Data from "Re-evaluating Deep Neural Networks for Phylogeny Estimation: The issue of taxon sampling" (2021) (0)
Multiple Sequence Alignment (2017) (0)
Multiple Sequence Alignment for Large Heterogeneous Datasets Using SATé, PASTA, and UPP. (2021) (0)
Preface (2004) (0)
Statistically consistent divide-and-conquer pipelines for phylogeny estimation using NJMerge (2019) (0)
Correction to: The performance of coalescent-based species tree estimation methods under models of missing data (2020) (0)
Technical Reports Series Institute for Research in Cognitive Science April 1996 Mathematical Approaches to Comparative Linguistics (2016) (0)
Special RECOMB 2002 Issue (2004) (0)
HIPPI: highly accurate protein family classification with ensembles of HMMs (2016) (0)
Consensus and Agreement Trees (2017) (0)
Using Robinson-Foulds supertrees in divide-and-conquer phylogeny estimation (2021) (0)
Additional File 2: Additional Proofs (2020) (0)
Kaikoura Information Processing Letters tree theorems : Computing the maximum agreement subtree (1993) (0)
Tree Reconstruction Methods (2007) (0)
Minimizing phylogenetic number evolutionary trees * to find good (1996) (0)
Distance-based Tree Estimation Methods (2017) (0)
Brief Introduction to Phylogenetic Estimation (2017) (0)
Ultra-large alignments using phylogeny-aware profiles (2015) (0)
Engineering in genomics-combinatorial optimization in biology (1993) (0)
Gene tree parsimony for incomplete gene trees: addressing true biological loss (2018) (0)
Alenex workshop preface (2005) (0)
Constructing Trees from Qualitative Characters (2017) (0)
The performance of coalescent-based species tree estimation methods under models of missing data (2018) (0)
Engineering in Genomics (1993) (0)
Proceedings of the Tenth Annual ACM-SIAM Symposium on Discrete Algorithms, 17-19 January 1999, Baltimore, Maryland, USA (1999) (0)
Phylogenomics: Constructing Species Phylogenies from Multi-Locus Data (2017) (0)
Faculty Opinions recommendation of Likelihood-based tree reconstruction on a concatenation of aligned sequence data sets can be statistically inconsistent. (2017) (0)
eMAFFTadd: scaling MAFFT-linsi-add to large datasets (2022) (0)
Sequence Alignments and Trees for Mammalian 0.5X for Mirarab et. al. (2014) (0)
Faculty Opinions recommendation of Accurate inference of tree topologies from multiple sequence alignments using deep learning. (2019) (0)
Computing and Combinatorics (2003) (0)
Data from: "Inferring Species Trees from Gene-Family with Duplication and Loss using Multi-Copy Gene-Family Tree Decomposition" (2021) (0)
Scaling statistical multiple sequence alignment to large datasets (2016) (0)
Mammalian Model Species Trees for 1X Model Condition for Mirarab et. al. (2014) (0)
In Memoriam: Eugene L. Lawler (1994) (0)
MRL and SuperFine+MRL: new supertree methods (2012) (0)
Computing and Combinatorics: 9th Annual International Conference, COCOON 2003, Big Sky, MT, USA, July 25-28, 2003, Proceedings (2003) (0)
Faculty Opinions recommendation of The Prevalence and Impact of Model Violations in Phylogenetic Analysis. (2019) (0)
2 : 2 Gene Tree Parsimony for Incomplete Gene Trees (2017) (0)
Biological Mammalian Dataset for Mirarab et. al. (2014) (0)
Phylogenomics and population genomics: Moddels, algorithms, and analytical tools (2012) (0)
Data from: Accurate Large-scale Phylogeny-Aware Alignment using BAli-Phy (2021) (0)
Statistically Consistent Rooting of Species Trees under the Multispecies Coalescent Model (2023) (0)
Faculty of 1000 evaluation for Phase transition in the sample complexity of likelihood-based phylogeny inference. (2018) (0)
Biological Datasets based on Salichos and Rokas for Mirarab et. al. (2014) (0)
Non-parametric correction of estimated gene trees using TRACTION (2020) (0)
Bioinformatics for Biologists: Phylogenetic estimation: optimization problems, heuristics, and performance analysis (2011) (0)
HMMerge: an ensemble method for multiple sequence alignment (2023) (0)
Binning Code for Mirarab et. al. (2014) (0)
Data from: SuperFine: fast and accurate supertree estimation (2011) (0)
Finding Scientific Communities In Citation Graphs: Convergent Clustering (2020) (0)
An analytical upper bound on the number of loci required for all splits of a species tree to appear in a set of gene trees (2016) (0)
An improved mode of running PASTA (2020) (0)
Fast and Accurate Species Trees from Weighted Internode Distances (2022) (0)
Faculty Opinions recommendation of ASTRAL-Pro: Quartet-Based Species-Tree Inference despite Paralogy. (2021) (0)
Faculty of 1000 evaluation for Efficient exploration of the space of reconciled gene trees. (2018) (0)
ppIacerDC (2021) (0)
Mathematics of Evolution and Phylogeny Library of Congress Cataloging in Publication Data (data Available) (2004) (0)
Beyond gap models: Reconstructing alignments and phylogenies under genomic-scale events (2007) (0)
Session introduction (2003) (0)
New Divide-and-Conquer Techniques for Large-Scale Phylogenetic Estimation (2019) (0)
SIESTA: enhancing searches for optimal supertrees and species trees (2018) (0)
Applications of Clustering and Visualization to Phylogeny (2003) (0)
Faculty Opinions recommendation of Renewing Felsenstein's phylogenetic bootstrap in the era of big data. (2018) (0)
Phylogenies from Gene Order Data: A Detailed Study of Breakpoint Analysis (2007) (0)
Simulation Procedure Details for Mirarab et. al. (2014) (0)
Statistical Gene Tree Estimation Methods (2017) (0)
Fragmentary Sequences for Variable-Sized RNAsim Datasets (2021) (0)
WITCH-NG: efficient and accurate alignment of datasets with sequence length heterogeneity (2022) (0)
Next Generation Sequencing – Algorithms , and Software For Biomedical Applications (2016) (0)
Using Robinson-Foulds supertrees in divide-and-conquer phylogeny estimation (2021) (0)
SCAMPP+FastTree: improving scalability for likelihood-based phylogenetic placement (2022) (0)
Data from: TreeMerge: A new method for improving the scalability of species tree estimation methods (2019) (0)

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