Tatsuya Akutsu
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Computer Science
Tatsuya Akutsu's Degrees
- PhD Computer Science Kyoto University
- Masters Computer Science Kyoto University
- Bachelors Computer Science Kyoto University
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(Suggest an Edit or Addition)Tatsuya Akutsu's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Identification of Genetic Networks from a Small Number of Gene Expression Patterns Under the Boolean Network Model (1998) (776)
- Control of Boolean networks: hardness results and algorithms for tree structured networks. (2007) (480)
- Protein homology detection using string alignment kernels (2004) (409)
- Inferring qualitative relations in genetic networks and metabolic pathways (2000) (405)
- Dynamic programming algorithms for RNA secondary structure prediction with pseudoknots (2000) (295)
- PROSPER: An Integrated Feature-Based Tool for Predicting Protease Substrate Cleavage Sites (2012) (261)
- IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming (2011) (234)
- Extensions of marginalized graph kernels (2004) (207)
- Graph Kernels for Molecular Structure-Activity Relationship Analysis with Support Vector Machines (2005) (206)
- iLearn : an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data (2019) (205)
- iProt-Sub: a comprehensive package for accurately mapping and predicting protease-specific substrates and cleavage sites (2018) (180)
- Algorithms for identifying Boolean networks and related biological networks based on matrix multiplication and fingerprint function (2000) (172)
- A novel representation of protein sequences for prediction of subcellular location using support vector machines (2005) (158)
- Dominating scale-free networks with variable scaling exponent: heterogeneous networks are not difficult to control (2012) (148)
- Cascleave: towards more accurate prediction of caspase substrate cleavage sites (2010) (145)
- Identification of gene regulatory networks by strategic gene disruptions and gene overexpressions (1998) (134)
- Quokka: a comprehensive tool for rapid and accurate prediction of kinase family‐specific phosphorylation sites in the human proteome (2018) (120)
- PROSPERous: high-throughput prediction of substrate cleavage sites for 90 proteases with improved accuracy (2018) (120)
- PREvaIL, an integrative approach for inferring catalytic residues using sequence, structural, and network features in a machine-learning framework. (2018) (108)
- Algorithms for inferring qualitative models of biological networks. (1999) (107)
- RactIP: fast and accurate prediction of RNA-RNA interaction using integer programming (2010) (102)
- Structural controllability of unidirectional bipartite networks (2013) (100)
- KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains (2004) (99)
- Bastion6: a bioinformatics approach for accurate prediction of type VI secreted effectors (2018) (91)
- A comprehensive review and performance evaluation of bioinformatics tools for HLA class I peptide-binding prediction (2020) (91)
- An approximation method for solving the steady-state probability distribution of probabilistic Boolean networks (2007) (89)
- Algorithms for Finding Small Attractors in Boolean Networks (2007) (88)
- Identification of genetic networks by strategic gene disruptions and gene overexpressions under a boolean model (2003) (88)
- Large-scale comparative assessment of computational predictors for lysine post-translational modification sites (2018) (83)
- Optimal control policy for probabilistic Boolean networks with hard constraints. (2009) (80)
- Local Alignment Kernels for Biological Sequences (2004) (73)
- DeepCleave: a deep learning predictor for caspase and matrix metalloprotease substrates and cleavage sites (2019) (73)
- Computational analysis and prediction of lysine malonylation sites by exploiting informative features in an integrative machine-learning framework (2018) (71)
- On construction of stochastic genetic networks based on gene expression sequences (2005) (70)
- On the approximation of largest common subtrees and largest common point sets (1994) (70)
- Distribution of Distances and Triangles in a Point Set and Algorithms for Computing the Largest Common Point Sets (1997) (69)
- Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods (2018) (68)
- PhosphoPredict: A bioinformatics tool for prediction of human kinase-specific phosphorylation substrates and sites by integrating heterogeneous feature selection (2017) (63)
- Comprehensive review and assessment of computational methods for predicting RNA post-transcriptional modification sites from RNA sequences (2019) (63)
- Minimum dominating set-based methods for analyzing biological networks. (2016) (62)
- Efficient tree-matching methods for accurate carbohydrate database queries. (2003) (61)
- Cascleave 2.0, a new approach for predicting caspase and granzyme cleavage targets (2014) (60)
- Prodepth: Predict Residue Depth by Support Vector Regression Approach from Protein Sequences Only (2009) (60)
- Protein Structure Alignment Using Dynamic Programing and Iterative Improvement (1996) (60)
- Bastion3: a two-layer ensemble predictor of type III secreted effectors (2018) (60)
- Analysis of critical and redundant nodes in controlling directed and undirected complex networks using dominating sets (2014) (59)
- Enumerating Treelike Chemical Graphs with Given Path Frequency (2008) (58)
- Simulation study in Probabilistic Boolean Network models for genetic regulatory networks (2007) (58)
- iLearnPlus: a comprehensive and automated machine-learning platform for nucleic acid and protein sequence analysis, prediction and visualization (2021) (58)
- Prediction using step-wise L1, L2 regularization and feature selection for small data sets with large number of features (2011) (56)
- HSEpred: predict half-sphere exposure from protein sequences (2008) (56)
- Subcellular location prediction of proteins using support vector machines with alignment of block sequences utilizing amino acid composition (2007) (55)
- Optimizing amino acid substitution matrices with a local alignment kernel (2006) (53)
- Inferring a Graph from Path Frequency (2005) (53)
- Finding Minimum Reaction Cuts of Metabolic Networks Under a Boolean Model Using Integer Programming and Feedback Vertex Sets (2010) (52)
- On approximation algorithms for local multiple alignment (2000) (50)
- On the approximation of protein threading (1997) (48)
- Systematic analysis and prediction of type IV secreted effector proteins by machine learning approaches (2017) (47)
- Efficient Algorithms for Finding Maximum and Maximal Cliques: Effective Tools for Bioinformatics (2011) (46)
- Procleave: Predicting Protease-specific Substrate Cleavage Sites by Combining Sequence and Structural Information (2020) (44)
- FunSAV: Predicting the Functional Effect of Single Amino Acid Variants Using a Two-Stage Random Forest Model (2012) (44)
- Feature weight estimation for gene selection: a local hyperlinear learning approach (2014) (43)
- A Polynomial Time Algorithm for Finding a Largest Common Subgraph of almost Trees of Bounded Degree (1993) (42)
- DAFS: simultaneous aligning and folding of RNA sequences via dual decomposition (2012) (41)
- Correlation between structure and temperature in prokaryotic metabolic networks (2007) (41)
- Integer Programming-Based Method for Designing Synthetic Metabolic Networks by Minimum Reaction Insertion in a Boolean Model (2014) (39)
- Conditional random field approach to prediction of protein-protein interactions using domain information (2011) (39)
- A Control Model for Markovian Genetic Regulatory Networks (2006) (38)
- Point matching under non-uniform distortions (2003) (38)
- NP-Hardness Results for Protein Side-chain Packing (1997) (38)
- Protein Side-chain Packing Problem: A Maximum Edge-weight Clique Algorithmic Approach (2005) (37)
- Structurally robust control of complex networks. (2014) (36)
- Finding a Periodic Attractor of a Boolean Network (2012) (36)
- TANGLE: Two-Level Support Vector Regression Approach for Protein Backbone Torsion Angle Prediction from Primary Sequences (2012) (36)
- SecretEPDB: a comprehensive web-based resource for secreted effector proteins of the bacterial types III, IV and VI secretion systems (2017) (35)
- PeNGaRoo, a combined gradient boosting and ensemble learning framework for predicting non-classical secreted proteins (2019) (35)
- Approximating Tree Edit Distance through String Edit Distance (2006) (35)
- A score matrix to reveal the hidden links in glycans (2005) (33)
- Point matching under non-uniform distortions and protein side chain packing based on an efficient maximum clique algorithm. (2002) (32)
- Computational Methods for Modification of Metabolic Networks (2015) (32)
- Detecting a Singleton Attractor in a Boolean Network Utilizing SAT Algorithms (2009) (32)
- On determining the congruence of point sets in d dimensions (1998) (32)
- Inferring strengths of protein-protein interactions from experimental data using linear programming (2003) (31)
- Approximation and parameterized algorithms for common subtrees and edit distance between unordered trees (2013) (31)
- On control of singleton attractors in multiple Boolean networks: integer programming-based method (2014) (31)
- Critical controllability in proteome-wide protein interaction network integrating transcriptome (2016) (31)
- Efficient extraction of mapping rules of atoms from enzymatic reaction data (2003) (30)
- A Mathematical Model for the Detection Mechanism of DNA Double-Strand Breaks Depending on Autophosphorylation of ATM (2009) (30)
- Approximation and Exact Algorithms for RNA Secondary Structure Prediction and Recognition of Stochastic Context-free Languages (1998) (30)
- Causalcall: Nanopore Basecalling Using a Temporal Convolutional Network (2020) (30)
- Two complementary representations of a scale-free network (2004) (29)
- Recent Progress on the Analysis of Power-law Features in Complex Cellular Networks (2007) (29)
- Effect of B-Ions Substitution in [(K1/2Bi1/2)-(Na1/2Bi1/2)](Ti-B)O3 System with B=Zr, Fe1/2Nb1/2, Zn1/3Nb2/3 or Mg1/3Nb2/3 (1995) (28)
- Bioinformatic Approaches for Predicting substrates of Proteases (2011) (28)
- Tree Edit Distance Problems: Algorithms and Applications to Bioinformatics (2010) (28)
- Computational identification of eukaryotic promoters based on cascaded deep capsule neural networks. (2020) (28)
- Completing Networks Using Observed Data (2009) (28)
- Prediction of RNA secondary structure with pseudoknots using integer programming (2009) (28)
- Comparison and Enumeration of Chemical Graphs (2013) (27)
- A grammatical approach to RNA-RNA interaction prediction (2009) (27)
- Compound analysis via graph kernels incorporating chirality. (2010) (27)
- Sector dominance ratio analysis of financial markets (2015) (27)
- A Linear Time Pattern Matching Algorithm Between a String and a Tree (1993) (27)
- Determining a singleton attractor of an AND/OR Boolean network in O(1.587n) time (2010) (26)
- A probabilistic model for mining labeled ordered trees: capturing patterns in carbohydrate sugar chains (2005) (26)
- Determining Associations between Human Diseases and non-coding RNAs with Critical Roles in Network Control (2015) (25)
- Exact algorithms for computing the tree edit distance between unordered trees (2010) (25)
- A clique-based method for the edit distance between unordered trees and its application to analysis of glycan structures (2011) (25)
- Identification of novel DNA repair proteins via primary sequence, secondary structure, and homology (2009) (25)
- An Integrative Computational Framework Based on a Two-Step Random Forest Algorithm Improves Prediction of Zinc-Binding Sites in Proteins (2012) (25)
- Comparing biological networks via graph compression (2010) (25)
- Rtips: fast and accurate tools for RNA 2D structure prediction using integer programming (2012) (25)
- A simple method for inferring strengths of protein-protein interactions. (2004) (24)
- Integer Programming-Based Approach to Attractor Detection and Control of Boolean Networks (2012) (24)
- Algorithms for Inference, Analysis and Control of Boolean Networks (2008) (24)
- Approximating Minimum Keys and Optimal Substructure Screens (1996) (24)
- Finding optimal degenerate patterns in DNA sequences (2003) (23)
- Anthem: a user customised tool for fast and accurate prediction of binding between peptides and HLA class I molecules (2021) (23)
- Enumerating tree-like chemical graphs with given upper and lower bounds on path frequencies (2011) (23)
- Finding optimal control policy in Probabilistic Boolean Networks with hard constraints by using integer programming and dynamic programming (2010) (22)
- DeepVF: a deep learning-based hybrid framework for identifying virulence factors using the stacking strategy (2020) (22)
- Determining a Singleton Attractor of a Boolean Network with Nested Canalyzing Functions (2011) (22)
- Stochastic simulation of Boolean rxncon models: towards quantitative analysis of large signaling networks (2015) (21)
- Algorithms For Analysis, Inference, And Control Of Boolean Networks (2018) (21)
- Approximate String Matching with don't Care Characters (1994) (21)
- A relation between edit distance for ordered trees and edit distance for Euler strings (2006) (21)
- Branch-and-Bound Algorithms for Enumerating Treelike Chemical Graphs with Given Path Frequency Using Detachment-Cut (2010) (20)
- Structure of n-clique networks embedded in a complex network (2007) (20)
- Optimal Finite-Horizon Control for Probabilistic Boolean Networks with Hard Constraints (2007) (19)
- Improved algorithms for enumerating tree-like chemical graphs with given path frequency. (2008) (19)
- On the degree distribution of projected networks mapped from bipartite networks (2011) (19)
- Convolutional Neural Network Approach to Lung Cancer Classification Integrating Protein Interaction Network and Gene Expression Profiles (2018) (19)
- The role of internal duplication in the evolution of multi-domain proteins (2010) (19)
- Fast and accurate database homology search using upper bounds of local alignment scores (2005) (19)
- Approximate String Matching with Variable Length Don't Care Characters (1996) (19)
- Network control principles for identifying personalized driver genes in cancer (2019) (19)
- A Method for the Inverse QSAR/QSPR Based on Artificial Neural Networks and Mixed Integer Linear Programming (2020) (18)
- ON THE RELATION BETWEEN FLUCTUATION AND SCALING-LAW IN GENE EXPRESSION TIME SERIES FROM YEAST TO HUMAN (2005) (18)
- A bisection algorithm for grammar-based compression of ordered trees (2010) (18)
- Identifying a Probabilistic Boolean Threshold Network From Samples (2018) (18)
- A Clique-Based Method Using Dynamic Programming for Computing Edit Distance Between Unordered Trees (2012) (18)
- Efficient enumeration of monocyclic chemical graphs with given path frequencies (2014) (18)
- Optimizing substitution matrices by separating score distributions (2004) (18)
- Enumerating Stereoisomers of Tree Structured Molecules Using Dynamic Programming (2009) (18)
- A simple greedy algorithm for finding functional relations: efficient implementation and average case analysis (2003) (17)
- Emergence of scale-free distribution in protein-protein interaction networks based on random selection of interacting domain pairs (2009) (17)
- Circulating Exosomal miRNA Profiles Predict the Occurrence and Recurrence of Hepatocellular Carcinoma in Patients with Direct-Acting Antiviral-Induced Sustained Viral Response (2019) (17)
- Multiple methods for protein side chain packing using maximum weight cliques. (2006) (17)
- Mechanism of protein folding. IV. Forming and breaking of disulfide bonds in bovine pancreatic tripsin inhibitor. (1992) (16)
- Efficient Enumeration of Stereoisomers of Outerplanar Chemical Graphs Using Dynamic Programming (2011) (16)
- An RNC Algorithm for Finding a Largest Common Subtree of Two Trees (1992) (16)
- Integer programming-based methods for attractor detection and control of boolean networks (2009) (16)
- Critical evaluation of in silico methods for prediction of coiled-coil domains in proteins (2016) (16)
- Clustering under the line graph transformation: application to reaction network (2004) (16)
- Application of a new probabilistic model for recognizing complex patterns in glycans (2004) (16)
- Analysis on critical nodes in controlling complex networks using dominating sets (2013) (16)
- Network controllability analysis of intracellular signalling reveals viruses are actively controlling molecular systems (2019) (15)
- Clustering of database sequences for fast homology search using upper bounds on alignment score. (2004) (15)
- Flexible construction of hierarchical scale-free networks with general exponent. (2004) (14)
- Conservation Laws and Symmetries in Competitive Systems (2012) (14)
- Sensitivity of the power-law exponent in gene expression distribution to mRNA decay rate (2006) (14)
- Performance analysis of a greedy algorithm for inferring Boolean functions (2003) (14)
- Algorithms for Singleton Attractor Detection in Planar and Nonplanar AND/OR Boolean Networks (2009) (14)
- A Polynomial-Time Algorithm for Computing the Maximum Common Connected Edge Subgraph of Outerplanar Graphs of Bounded Degree (2013) (14)
- Matching of Spots in 2D Electrophoresis Images. Point Matching Under Non-uniform Distortions (1999) (14)
- A Mixed Integer Linear Programming Formulation to Artificial Neural Networks (2019) (14)
- Protein Structure Alignment Using a Graph Matching Technique (1995) (13)
- Network Completion Using Dynamic Programming and Least-Squares Fitting (2012) (13)
- Prediction of Protein-Protein Interaction Strength Using Domain Features with Supervised Regression (2014) (13)
- Toward more accurate prediction of caspase cleavage sites: a comprehensive review of current methods, tools and features (2018) (13)
- Genetic Regulatory Networks (2007) (13)
- Assessing the performance of computational predictors for estimating protein stability changes upon missense mutations (2021) (13)
- Convolutional neural network approach to lung cancer classification integrating protein interaction network and gene expression profiles. (2019) (13)
- ncRNA-disease association prediction based on sequence information and tripartite network (2018) (13)
- Proteome compression via protein domain compositions. (2014) (12)
- Protein domain networks: Scale-free mixing of positive and negative exponents (2006) (12)
- Inferring a Chemical Structure from a Feature Vector Based on Frequency of Labeled Paths and Small Fragments (2007) (12)
- Origin of structural difference in metabolic networks with respect to temperature (2008) (12)
- Integer programming-based method for grammar-based tree compression and its application to pattern extraction of glycan tree structures (2010) (12)
- Analysis on controlling complex networks based on dominating sets (2013) (12)
- Finding and analysing the minimum set of driver nodes required to control multilayer networks (2019) (12)
- A constructive approach to gene expression dynamics (2004) (12)
- An Improved Algorithm for Detecting a Singleton Attractor in a Boolean Network Consisting of AND/OR Nodes (2008) (12)
- Protein Threading with Profiles and Distance Constraints Using Clique Based Algorithms (2006) (11)
- Prediction of Heterodimeric Protein Complexes from Weighted Protein-Protein Interaction Networks Using Novel Features and Kernel Functions (2013) (11)
- A Novel Method for Inference of Chemical Compounds of Cycle Index Two with Desired Properties Based on Artificial Neural Networks and Integer Programming (2020) (11)
- Measuring Structural Robustness of Metabolic Networks under a Boolean Model Using Integer Programming and Feedback Vertex Sets (2009) (11)
- Probabilistic controllability approach to metabolic fluxes in normal and cancer tissues (2019) (11)
- Complex network-based approaches to biomarker discovery. (2016) (11)
- A Novel Method for the Inverse QSAR/QSPR to Monocyclic Chemical Compounds Based on Artificial Neural Networks and Integer Programming (2021) (11)
- LBSizeCleav: improved support vector machine (SVM)-based prediction of Dicer cleavage sites using loop/bulge length (2016) (11)
- Algorithms and Complexity Analyses for Control of Singleton Attractors in Boolean Networks (2008) (11)
- Efficient extraction of mapping rules of atoms from enzymatic reaction data. (2004) (11)
- Prediction of heterotrimeric protein complexes by two-phase learning using neighboring kernels (2014) (11)
- Determining the minimum number of protein-protein interactions required to support known protein complexes (2018) (11)
- Linear programming based approach to the derivation of a contact potential for protein threading. (1998) (10)
- Exact Identification of the Structure of a Probabilistic Boolean Network from Samples (2016) (10)
- On the complexity of finding a largest common subtree of bounded degree (2013) (10)
- Efficient enumeration of stereoisomers of tree structured molecules using dynamic programming (2011) (10)
- Comparison of SVM-Based Methods for Remote Homology Detection (2002) (10)
- Prediction of protein-RNA residue-base contacts using two-dimensional conditional random field with the lasso (2013) (10)
- Efficient and robust three-dimensional pattern matching algorithms using hashing and dynamic programming techniques (1994) (10)
- Statistical Learning Algorithm for Tree Similarity (2007) (10)
- Selecting Informative Genes for Cancer Classification Using Gene Expression Data (2003) (9)
- A mathematical model for generating bipartite graphs and its application to protein networks (2009) (9)
- Efficient Exponential Time Algorithms for Edit Distance between Unordered Trees (2012) (9)
- Protein threading with profiles and constraints (2004) (9)
- Analysis of Critical and Redundant Vertices in Controlling Directed Complex Networks Using Feedback Vertex Sets (2018) (9)
- Dynamic Programming and Clique Based Approaches for Protein Threading with Profiles and Constraints (2006) (9)
- On the Complexity of the Maximum Common Subgraph Problem for Partial k-Trees of Bounded Degree (2012) (9)
- Protease target prediction via matrix factorization (2018) (9)
- Flux balance impact degree: a new definition of impact degree to properly treat reversible reactions in metabolic networks (2013) (9)
- A New Integer Linear Programming Formulation to the Inverse QSAR/QSPR for Acyclic Chemical Compounds Using Skeleton Trees (2020) (9)
- Recent Advances in Predicting Functional Impact of Single Amino Acid Polymorphisms: A Review of Useful Features, Computational Methods and Available Tools (2013) (9)
- DP Algorithms for RNA Secondary Structure Prediction with Pseudoknots (1997) (9)
- Analyses and Algorithms for Predecessor and Control Problems for Boolean Networks of Bounded Indegree (IPSJ Transactions on Bioinformatics Vol.1) (2009) (9)
- Enumerating Substituted Benzene Isomers of Tree-Like Chemical Graphs (2018) (8)
- Image Compression-based Approach to Measuring the Similarity of Protein Structures (2007) (8)
- Analysis of the Effect of Degree Correlation on the Size of Minimum Dominating Sets in Complex Networks (2016) (8)
- DeepBL: a deep learning-based approach for in silico discovery of beta-lactamases. (2020) (8)
- Controllability Methods for Identifying Associations Between Critical Control ncRNAs and Human Diseases. (2019) (8)
- An Inverse QSAR Method Based on a Two-Layered Model and Integer Programming (2021) (8)
- Inferring approximate functional dependencies from example data (1993) (8)
- On Determining the Congruity of Point Sets in Higher Dimensions (1994) (8)
- Computing Smallest Intervention Strategies for Multiple Metabolic Networks in a Boolean Model (2015) (8)
- A Polynomial-Time Algorithm for Computing the Maximum Common Subgraph of Outerplanar Graphs of Bounded Degree (2012) (8)
- Breadth-First Search Approach to Enumeration of Tree-like Chemical Compounds (2013) (8)
- An Improved Satisfiability Algorithm for Nested Canalyzing Functions and its Application to Determining a Singleton Attractor of a Boolean Network (2013) (8)
- Deep learning with evolutionary and genomic profiles for identifying cancer subtypes. (2019) (7)
- Improving prediction of heterodimeric protein complexes using combination with pairwise kernel (2018) (7)
- Dynamic Programming Algorithms for RNA Structure Prediction with Binding Sites (2010) (7)
- Inhibitory neurons exhibit high controlling ability in the cortical microconnectome (2021) (7)
- Finding and Analyzing the Minimum Set of Driver Nodes in control of Boolean Networks (2016) (7)
- A new method of computer representation of stereochemistry. Transforming a stereochemical structure into a graph (1991) (7)
- A Grammatical Approach to RNA‐RNA Interaction Prediction (2007) (7)
- Domain-Based Approaches to Prediction and Analysis of Protein-Protein Interactions (2014) (7)
- Recent Advances in RNA Secondary Structure Prediction with Pseudoknots (2006) (7)
- Deep Learning with Evolutionary and Genomic Profiles for Identifying Cancer Subtypes (2018) (7)
- Protein structure comparison using representation by line segment sequences. (1996) (7)
- Critical controllability analysis of directed biological networks using efficient graph reduction (2017) (7)
- A novel method for inference of acyclic chemical compounds with bounded branch-height based on artificial neural networks and integer programming (2020) (7)
- Improved approximation of the largest common subtree of two unordered trees of bounded height (2008) (7)
- A New Method of Computer Representation of Stereochemistry. Transforming a Stereochemical Structure into a Graph. (1991) (7)
- iFeatureOmega: an integrative platform for engineering, visualization and analysis of features from molecular sequences, structural and ligand data sets (2022) (7)
- An O(1.787n)-Time Algorithm for Detecting a Singleton Attractor in a Boolean Network Consisting of AND/OR Nodes (2007) (6)
- On Finding a Fixed Point in a Boolean Network with Maximum Indegree 2 (2009) (6)
- Discriminative random field approach to prediction of protein residue contacts (2011) (6)
- A Bipartite Graph Based Model of Protein Domain Networks (2009) (6)
- Algorithms for Determining the Geometrical Congruity in Two and Three Dimensions (1992) (6)
- Extracting boolean and probabilistic rules from trained neural networks (2020) (6)
- A quadsection algorithm for grammar-based image compression (2010) (6)
- IMPROVED ALGORITHMS FOR ENUMERATING TREE-LIKE CHEMICAL GRAPHS WITH GIVEN PATH FREQUENCY (2008) (6)
- Archaeal β diversity patterns under the seafloor along geochemical gradients (2014) (6)
- A stochastic approach to multi-gene expression dynamics (2005) (6)
- PROST: AlphaFold2-aware Sequence-Based Predictor to Estimate Protein Stability Changes upon Missense Mutations (2022) (6)
- Stability and restoration phenomena in competitive systems (2012) (5)
- CHEMILOG - A Logic Programming Language/System for Chemical Information Processing (1988) (5)
- Managing and analyzing carbohydrate data (2004) (5)
- Identification of metabolic units induced by environmental signals (2006) (5)
- Fast Algorithms for Comparison of Similar Unordered Trees (2004) (5)
- Constant Factor Approximation of Edit Distance of Bounded Height Unordered Trees (2009) (5)
- Critical assessment of computational tools for prokaryotic and eukaryotic promoter prediction (2022) (5)
- Singleton and 2-periodic attractors of sign-definite Boolean networks (2012) (5)
- Knowledge-based system for computer-aided drug design (1993) (5)
- Novel Bioinformatics Approaches for Analysis of High-Throughput Biological Data (2014) (5)
- Domain-Based Prediction and Analysis of Protein-Protein Interactions (2009) (5)
- Efficient exponential-time algorithms for edit distance between unordered trees (2014) (5)
- Survival Analysis by Penalized Regression and Matrix Factorization (2013) (5)
- A Novel Method for Inferring Chemical Compounds With Prescribed Topological Substructures Based on Integer Programming (2020) (5)
- Efficient determination of cluster boundaries for analysis of gene expression profile data using hierarchical clustering and wavelet transform. (2005) (5)
- An accessibility-incorporated method for accurate prediction of RNA–RNA interactions from sequence data (2017) (5)
- Using binding Profiles to Predict binding sites of Target RNAs (2011) (5)
- Theoretical estimation of metabolic network robustness against multiple reaction knockouts using branching process approximation (2013) (5)
- Dynamic Programming Algorithms and Grammatical Modeling for Protein Beta-Sheet Prediction (2009) (5)
- Distribution and enumeration of attractors in probabilistic Boolean networks. (2009) (5)
- Identification of the Structure of a Probabilistic Boolean Network From Samples Including Frequencies of Outcomes (2019) (5)
- An Efficient Method of Computing Impact Degrees for Multiple Reactions in Metabolic Networks with Cycles (2011) (5)
- An Improved Clique-Based Method for Computing Edit Distance between Unordered Trees and Its Application to Comparison of Glycan Structures (2011) (5)
- An Overview of Bioinformatics Methods for Analyzing Autism Spectrum Disorders. (2019) (5)
- Network Completion for Time Varying Genetic Networks (2013) (4)
- On the Complexity of Finding Control Strategies for Boolean Networks (2005) (4)
- Comparison of Pseudoknotted RNA Secondary Structures by Topological Centroid Identification and Tree Edit Distance (2020) (4)
- A Method for Molecular Design Based on Linear Regression and Integer Programming (2022) (4)
- Grammar-based compression approach to extraction of common rules among multiple trees of glycans and RNAs (2015) (4)
- Algorithmic Aspects of Protein Threading (2008) (4)
- Logic-based approach to expert systems in chemistry (1991) (4)
- Euler String-Based Compression of Tree-structured Data and its Application to Analysis of RNAs 1 (2016) (4)
- Enumeration method for tree-like chemical compounds with benzene rings and naphthalene rings by breadth-first search order (2016) (4)
- A Novel Method for the Inverse QSAR/QSPR based on Artificial Neural Networks and Mixed Integer Linear Programming with Guaranteed Admissibility (2020) (4)
- Hardness Results on Local Multiple Alignment of Biological Sequences (2007) (4)
- On the Complexity of Deriving Score Functions from Examples for Problems in Molecular Biology (1998) (4)
- PAnDE : AVERAGED n-DEPENDENCE ESTIMATORS FOR POSITIVE UNLABELED LEARNING (2017) (4)
- Exact Algorithms for Finding a Minimum Reaction Cut under a Boolean Model of Metabolic Networks (2010) (4)
- Integer programming-based approach to allocation of reporter genes for cell array analysis (2008) (4)
- A Simple Greedy Algorithm for Finding Functional Relations: Efficient Implementation and Average Case Anaylsis (2000) (4)
- Discrimination of singleton and periodic attractors in Boolean networks (2017) (4)
- Exact and Heuristic Methods for Network Completion for Time-Varying Genetic Networks (2014) (4)
- New hashing techniques and their application to a protein structure database system (1995) (4)
- Maximum margin classifier working in a set of strings (2014) (4)
- On the number of driver nodes for controlling a Boolean network when the targets are restricted to attractors. (2019) (4)
- Inhibitory neurons are a Central Controlling regulator in the effective cortical microconnectome (2020) (3)
- On observability of attractors in Boolean Networks (2015) (3)
- Predicting functional impact of single amino acid polymorphisms by integrating sequence and structural features (2011) (3)
- Topological aspects of protein networks (2007) (3)
- Efficient computation of impact degrees for multiple reactions in metabolic networks with cycles (2009) (3)
- Databases for Protein-Protein Interactions. (2021) (3)
- A Software Tool for Mapping Human Genome by Chromosome-Specific Two-Dimensional Electrophoresis Method (1995) (3)
- Kernel Methods for Chemical Compounds: From Classification to Design (2011) (3)
- An FVS-Based Approach to Attractor Detection in Asynchronous Random Boolean Networks (2020) (3)
- A Method for Inferring Polymers Based on Linear Regression and Integer Programming (2021) (3)
- Network controllability: viruses are driver agents in dynamic molecular systems (2018) (3)
- Breast Cancer Subtype by Imbalanced Omics Data through A Deep Learning Fusion Model (2020) (3)
- An Inverse QSAR Method Based on Decision Tree and Integer Programming (2021) (3)
- Finding Incoming Global States in Boolean Networks (2007) (3)
- Local multiple alignment of numerical sequences: detection of subtle motifs from protein sequences and structures. (2002) (3)
- An Efficient Data Assimilation Schema for Restoration and Extension of Gene Regulatory Networks Using Time-Course Observation Data (2014) (3)
- Enumerating Chemical Graphs with Mono-block 2-Augmented Tree Structure from Given Upper and Lower Bounds on Path Frequencies (2020) (3)
- Analysis of the impact degree distribution in metabolic networks using branching process approximation (2011) (3)
- Weighted minimum feedback vertex sets and implementation in human cancer genes detection (2021) (3)
- Similar Subtree Search Using Extended Tree Inclusion (2015) (3)
- Enumerating Chemical Graphs with Two Disjoint Cycles Satisfying Given Path Frequency Specifications (2020) (3)
- Development of Web Interface of Image Analysis System DDGEL for 2D Gel Electrophoresis (1998) (3)
- Rapid protein fragment search using hash functions based on the Fourier transform (1997) (3)
- Integer programming-based method for completing signaling pathways and its application to analysis of colorectal cancer. (2010) (3)
- Network Completion for Static Gene Expression Data (2014) (3)
- A Novel Clustering Method for Analysis of Biological Networks using Maximal Components of Graphs (2007) (2)
- Selected Papers from the 16th International Conference on Bioinformatics (InCoB 2017) (2017) (2)
- Measuring the similarity of protein structures using image local feature descriptors SIFT and SURF (2014) (2)
- On the complexity of deriving position specific score matrices from positive and negative sequences (2002) (2)
- New and Improved Algorithms for Unordered Tree Inclusion (2017) (2)
- Clique-based algorithms for protein threading with profiles and constraints (2005) (2)
- A novel graph convolutional neural network for predicting interaction sites on protein kinase inhibitors in phosphorylation (2022) (2)
- New Hashing Techniques for Three-Dimensional Protein Structures (1994) (2)
- Effect of B-Ions Substitution in [(K_ Bi_ )-(Na_ Bi_ )](Ti-B)O_3 System with B=Zr, Fe_ Nb_ , Zn_ Nb_ or Mg_ Nb_ (1995) (2)
- Chapter 5: Theory and Method of Completion for a Boolean Regulatory Network Using Observed Data (2014) (2)
- Genomic data assimilation using a higher moment filtering technique for restoration of gene regulatory networks (2015) (2)
- A Parallel Algorithm for Determining the Congruence of Point Sets in Three-Dimensions (1995) (2)
- Protein complex prediction via improved verification methods using constrained domain-domain matching (2012) (2)
- Host-Pathogen Protein Interaction Prediction Based on Local Topology Structures of a Protein Interaction Network (2016) (2)
- On the Compressive Power of Boolean Threshold Autoencoders (2020) (2)
- Emergence of the self-similar property in gene expression dynamics (2007) (2)
- Parallelization of enumerating tree-like chemical compounds by breadth-first search order (2015) (2)
- Molecular Design Based on Artificial Neural Networks, Integer Programming and Grid Neighbor Search (2021) (2)
- Mathematical Models and Computational Methods for Inference of Genetic Networks (2016) (2)
- Enumeration Method for Structural Isomers Containing User-Defined Structures Based on Breadth-First Search Approach (2016) (2)
- On the Complexity of Inference and Completion of Boolean Networks from Given Singleton Attractors (2013) (2)
- Inference of Nonlinear Biological Systems by Using Linear Programming (2000) (2)
- Adjustive Linear Regression and Its Application to the Inverse QSAR (2022) (2)
- An Efficient Algorithm for Generating Colored Outerplanar Graphs (2007) (2)
- Finding Minimum Reaction Cuts of Metabolic Networks Under a Boolean Model (2012) (2)
- Optimal string clustering based on a Laplace-like mixture and EM algorithm on a set of strings (2014) (2)
- On the Complexity of Deriving Position Specific Score Matrices from Examples (2002) (2)
- Analysis and prediction of nutritional requirements using structural properties of metabolic networks and support vector machines. (2010) (1)
- A Fixed-Parameter Algorithm for Detecting a Singleton Attractor in an AND/OR Boolean Network with Bounded Treewidth (2015) (1)
- Large Scale Protein Side-chain Packing Based on Maximum Edge-weight Clique Finding Algorithm (2005) (1)
- Comparison of the Representational Power of Random Forests, Binary Decision Diagrams, and Neural Networks (2022) (1)
- Computing Minimum Reaction Modifications in a Boolean Metabolic Network (2018) (1)
- Predicting protein-RNA residue-base contacts using two-dimensional conditional random field (2012) (1)
- Measuring the Similarity of Protein Structures Using Image Compression Algorithms (2011) (1)
- The role of log-normal dynamics in the evolution of biochemical pathways. (2006) (1)
- Identification of periodic attractors in Boolean networks using a priori information (2022) (1)
- A Clustering Method for Analysis of Sequence Similarity Networks of Proteins Using Maximal Components of Graphs (2008) (1)
- Title On control of singleton attractors in multiple Booleannetworks : integer programming-based method (2014) (1)
- On the Distribution of Successor States in Boolean Threshold Networks (2021) (1)
- A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models (2016) (1)
- Analysis And Control Of Deterministic And Probabilistic Boolean Networks (2010) (1)
- Codependency and mutual exclusivity for gene community detection from sparse single-cell transcriptome data (2021) (1)
- Symmetry and Dynamics in living organisms: The self-similarity principle governs gene expression dynamics (2005) (1)
- Sampling Effectiveness in Discovering Functional Relationships in Databases (1996) (1)
- On Pattern Matching Methods for Three Dimensional Protein Structures (1993) (1)
- A Gibbs sampling approach to detection of tree motifs. (2005) (1)
- Enumerating Substituted Benzene Isomers of Tree-Like Chemical Graphs. (2018) (1)
- On the parameterized complexity of associative and commutative unification (2013) (1)
- Approximation Algorithms for Optimal RNA Secondary Structures Common to Multiple Sequences (2007) (1)
- PROTEIX: An Interactive Database System for Three Dimensional Protein Structures (1993) (1)
- Approximate String Matching with Variable length Don't Cares (1995) (1)
- ReCGBM: a gradient boosting-based method for predicting human dicer cleavage sites (2021) (1)
- Development of a Spot Matching Module in Image Analysis System DDGEL for 2D Gel Electrophoresis (1997) (1)
- Densest subgraph-based methods for protein-protein interaction hot spot prediction (2022) (1)
- Enumerating Naphthalene Isomers of Tree-like Chemical Graphs (2016) (1)
- Protein Threading Using a Score Function Derived by a Linear Programming Based Method (1997) (1)
- Whole brain evaluation of cortical micro-connectomes (2022) (1)
- An Improved Integer Programming Formulation for Inferring Chemical Compounds with Prescribed Topological Structures (2021) (1)
- Statistical Significance of Tree Similarity Scores (2003) (1)
- Inferring Strengths of Protein-Protein Interactions Using Linear Programming (2003) (1)
- Algorithms for Computing an Optimal Protein Threading with Profiles and Distance Restraints (2003) (1)
- Molecular Design Based on Integer Programming and Quadratic Descriptors in a Two-layered Model (2022) (1)
- Latent Topic Extraction from Relational Table for Record Matching (2009) (1)
- Discrimination of attractors with noisy nodes in Boolean networks (2020) (1)
- Title Structurally robust control of complex networks (2016) (0)
- MSNet-4mC: learning effective multi-scale representations for identifying DNA N4-methylcytosine sites (2022) (0)
- Weighted minimum feedback vertex sets and implementation in human cancer genes detection (2021) (0)
- Genome Informatics 1996 : proceedings of the seventh Workshop on Genome Informatics, December 2-3, 1996, Tokyo, Japan (1996) (0)
- Probabilistic Critical Controllability Analysis of Protein Interaction Networks Integrating Normal Brain Ageing Gene Expression Profiles (2021) (0)
- Protein Structure Analysis Using Continuous Density Hidden Markov Models (2002) (0)
- Critical controllability analysis of directed biological networks using efficient graph reduction (2017) (0)
- FINDINGINCOMINGGLOBAL STATESINBOOLEAN NETWORKS (2007) (0)
- Intelligent Informatics in Translational Medicine 2016 (2017) (0)
- Systematic Characterization of Lysine Post-translational Modification Sites Using MUscADEL. (2022) (0)
- Tree Edit Distance with Variables. Measuring the Similarity between Mathematical Formulas (2021) (0)
- PFresGO: an attention mechanism-based deep-learning approach for protein annotation by integrating gene ontology inter-relationships (2023) (0)
- Improved Hardness of Maximum Common Subgraph Problems on Labeled Graphs of Bounded Treewidth and Bounded Degree (2020) (0)
- Title Archaeal β diversity patterns under the seafloor alonggeochemical gradients (2018) (0)
- Finding Conserved Regions in Protein Structures Using Support Vector Machines and Structure Alignment (2012) (0)
- Enumeration method for tree-like chemical compounds with benzene rings and naphthalene rings by breadth-first search order (2016) (0)
- Attractor detection and enumeration algorithms for Boolean networks (2022) (0)
- Modeling Power-law Distribution in Protein-protein Interaction Networks based on Random Selection of Interacting Domain Pairs (2008) (0)
- Automatic Spot Measurement for Genetic Spot Array Images (2000) (0)
- On the Size and Width of the Decoder of a Boolean Threshold Autoencoder (2021) (0)
- QSAR Analysis with Support Vector Machines and Graph Kernels (2004) (0)
- Universal collective fluctuations in gene expression dynamics from yeast to human (2005) (0)
- Optimization in Bioinformatics (2011) (0)
- Enhancement of the “PROTEIX” Database System for Three-Dimensional Protein Structures (1994) (0)
- Finding and analysing the minimum set of driver nodes required to control multilayer networks (2019) (0)
- Welcome message from IIBM-2013 international workshop co-chairs (2013) (0)
- A dynamic programming algorithm to predict synthesis processes of tree-structured compounds with graph grammar. (2010) (0)
- A Study of Identification of Dynamic Characteristics of Machine Tools by Means of Micro Tremor (1972) (0)
- ResNetKhib: a novel cell type-specific tool for predicting lysine 2-hydroxyisobutylation sites via transfer learning (2023) (0)
- Inferring a Union of Halfspaces from Examples (2002) (0)
- A Variational Bayesian EM Algorithm for Tree Similarity (2010) (0)
- Algorithms for Analysis and Control of Boolean Networks (2018) (0)
- Analysis of Boolean Networks and Boolean Models of Metabolic Networks (2019) (0)
- Prediction of heterotrimeric protein complexes by two-phase learning using neighboring kernels (2014) (0)
- Uncovering and classifying the role of driven nodes in control of complex networks (2021) (0)
- Metrics for RNA Secondary Structure Comparison. (2023) (0)
- On the Minimum Number of Genes Required for Discriminating Steady States under a Boolean Model (2017) (0)
- A novel method for inference of acyclic chemical compounds with bounded branch-height based on artificial neural networks and integer programming (2021) (0)
- An Image Analysis System for Two-Dimensional Gel Electrophoresis (1996) (0)
- PhosphoPredict: A bioinformatics tool for prediction of human kinase-specific phosphorylation substrates and sites by integrating heterogeneous feature selection (2017) (0)
- Preface (2008) (0)
- Title Efficient enumeration of monocyclic chemical graphs withgiven path frequencies (2019) (0)
- 3I0924 Exploring Feature Extraction Method for Time Series Data Obtained by Molecular Dynamics Simulation(3I Protein: Measurement & Analysis 1,The 49th Annual Meeting of the Biophysical Society of Japan) (2011) (0)
- Title Critical controllability in proteome-wide protein interactionnetwork integrating transcriptome (2016) (0)
- Mathematical Models and Data Analyses of Structures of Biological Networks (2007) (0)
- 2P-251 Bistability depending on the ATM autophosphorylation as a sensor and amplifier of DNA damage signals(Mathematical biology,The 47th Annual Meeting of the Biophysical Society of Japan) (2009) (0)
- A Fast Method for Inferring Strengths of Protein-Protein Interactions and A Hardness Result (2004) (0)
- 1R1130 Detection of weak sequence similarity with profile-profile comparison (2002) (0)
- Prediction of RNA secondary structures with binding sites using dynamic programming algorithm (ニューロコンピューティング) (2009) (0)
- [Algorithms for inferring genetic networks]. (2001) (0)
- DDGEL/DDCHIP: Web-Based Systems for Analysis of 2-D Gel Electrophoresis Images and DNA Macro/Micro Array Images (1999) (0)
- Analysis of and Chemical Structures Protein Sequences Machines Using Support Vector (0)
- Editor's Introductrion to "New Trends of Bioinformatic" ("New Trends of Bioinformatic") (2000) (0)
- Title Enumerating tree-like chemical graphs with given upper andlower bounds on path frequencies (2018) (0)
- Network controllability analysis of intracellular signalling reveals viruses are actively controlling molecular systems (2019) (0)
- Computational Method for Determining Global Protein Topology from Distance Restraints by Chemical Cross-Linking (2004) (0)
- DNA Repair Recognition via Support Vector Machines (2006) (0)
- An Inverse QSAR Method Based on Linear Regression and Integer Programming (2021) (0)
- Finding Influential Genes Using Gene Expression Data and Boolean Models of Metabolic Networks (2016) (0)
- Weak Homology Detection by Profile-Profile Comparison (2002) (0)
- Machines Using Support Vector (2006) (0)
- Some Properties of Prolog (1987) (0)
- On PAC learnability of functional dependencies (1992) (0)
- OP-CBIO190728 1..9 (2019) (0)
- Chapter 2 . 15 Algorithmic Aspects of Protein Threading (2019) (0)
- Markov Property and Scale-free Organization of Gene Expression (2004) (0)
- On the Complexity of Tree Edit Distance with Variables (2022) (0)
- Title Comparison and Enumeration of Chemical Graphs Author ( s ) (2017) (0)
- Inferring Genetic Networks Using Liner Programming (1999) (0)
- Title Comparing biological networks via graph compression (2019) (0)
- Title Finding and Analyzing the Minimum Set of Driver Nodes inControl of Boolean Networks (2016) (0)
- Editorial: Inference of Biological Networks (2022) (0)
- Algorithms for Point Set Matching with K-differences (2004) (0)
- Data Compression-Based Approaches to Analysis of Biological Networks (2010) (0)
- Learning Tree Similarity Based on a Statistical Model (2008) (0)
- A novel graph convolutional neural network for predicting interaction sites on protein kinase inhibitors in phosphorylation (2022) (0)
- Matrix Network: A New Data Structure for Efficient Enumeration of Microstates of a Genetic Regulatory Network (2015) (0)
- Emergence of the self-similarity principle in gene expression dynamics (2007) (0)
- Conditional Random Field Approach to Prediction of Protein-Protein Interactions Using Mutual Information Between Domains (2010) (0)
- Title Network completion using dynamic programming and least-squares fitting (2019) (0)
- LBSizeCleav: improved support vector machine (SVM)-based prediction of Dicer cleavage sites using loop/bulge length (2016) (0)
- Proceedings of the 6th Asia-Pacific Bioinformatics Conference, APBC 2008, 14-17 January 2008, Kyoto, Japan (2008) (0)
- Conservation law and Stability in Competitive Systems : Restoration phenomena from external perturbation (Theory of Biomathematics and Its Applications IX) (2013) (0)
- Probabilistic controllability approach to metabolic fluxes in normal and cancer tissues (2019) (0)
- On the Number of Driver Nodes for Controlling a Boolean Network to Attractors (2018) (0)
- A Local Search Algorithm for Local Multiple Alignment: Special Case Analysis and Application to Cancer Classification (2000) (0)
- Title Prediction of Protein-Protein Interaction Strength UsingDomain Features with Supervised Regression (2019) (0)
- Grammar-based Compression for Multiple Trees Using Integer Programming (2014) (0)
- Grammar-based compression approach to extraction of common rules among multiple trees of glycans and RNAs (2015) (0)
- Title Algorithms and complexity analyses for control of singletonattractors in Boolean networks (2008) (0)
- A Simple Linear-Time Algorithm for Computing the Centroid and Canonical Form of a Plane Graph and Its Applications (2018) (0)
- Detection and Enumeration of Steady States in Biological Information Networks (Acceleration and Visualization of Computation for Enumeration Problems) (2009) (0)
- Structural difference with growth temperature in metabolic networks (2007) (0)
- A Minimum Path Decomposition of the Hasse Diagram for Testing the Consistency of Functional Dependencies (1993) (0)
- A new approach to the design of acyclic chemical compounds using skeleton trees and integer linear programming (2022) (0)
- Conservation Laws and Symmetries in Competitive Systems(New Perspectives,Proceedings of the YITP Workshop on Econophysics,Econophysics 2011-The Hitchhiker's Guide to the Economy-) (2012) (0)
- Analysis of the Evolutionary Relationships of the PDZ Domains (2002) (0)
- Author index (1995) (0)
- Intelligent Informatics in Translational Medicine (2015) (0)
- 1PT191 Time-series analysis for protein dynamics using discrete wavelet transform with kernel canonical correlation analysis(The 50th Annual Meeting of the Biophysical Society of Japan) (2012) (0)
- ReCGBM: a gradient boosting-based method for predicting human dicer cleavage sites (2021) (0)
- Molecular Design Based on Integer Programming and Splitting Data Sets by Hyperplanes (2023) (0)
- Common Attractors in Multiple Boolean Networks. (2023) (0)
- Title Sector dominance ratio analysis of financial markets (2015) (0)
- Computational and Statistical Methods in Bioinformatics (2003) (0)
- Data Fusion for cleavage target prediction (2016) (0)
- Title Finding optimal control policy in probabilistic Boolean networks with hard constraints by using integer programming and dynamic programming (2011) (0)
- Gene expression dynamics and stochastic processes with Markov property (2004) (0)
- Enumerating Chemical Mono-Block 3-Augmented Trees with Two Junctions (2018) (0)
- Parallelization of enumerating tree-like chemical compounds by breadth-first search order (2015) (0)
- Prediction of Protein Beta-Sheets: Dynamic Programming versus Grammatical Approach (2008) (0)
- New Algorithms for Unordered Tree Inclusion (2017) (0)
- 1P-279 A mathematical model for apoptosis mechanism under oxidative stress(The 46th Annual Meeting of the Biophysical Society of Japan) (2008) (0)
- A linear control model for gene intervention in a genetic regulatory network (2005) (0)
- Title Analysis of the impact degree distribution in metabolicnetworks using branching process approximation (2019) (0)
- Grammar-based Compression for Directed and Undirected Generalized Series-parallel Graphs using Integer Linear Programming (2018) (0)
- Algorithms for Finding the Largest Subtree whose Copies Cover All the Leaves (1993) (0)
- Title Parallelization of enumerating tree-like chemical compoundsby breadth-first search order (2019) (0)
- Improving prediction of heterodimeric protein complexes using combination with pairwise kernel (2018) (0)
- A-008 On Observability of Steady States in a Boolean Network (2014) (0)
- Identifying miRNA-Gene Common and Specific Regulatory Modules for Cancer Subtyping by a High-Order Graph Matching Model (2022) (0)
- [Protein threading approach for prediction of protein structure]. (1997) (0)
- [Analysis of structures and dynamics of biological information networks]. (2005) (0)
- Subcubic Time Algorithms for RNA Secondary Structure Prediction (1998) (0)
- Resource Cut, a New Bounding Procedure to Algorithms for Enumerating Tree-Like Chemical Graphs (2019) (0)
- Feature weight estimation for gene selection: a local hyperlinear learning approach (2014) (0)
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What Schools Are Affiliated With Tatsuya Akutsu?
Tatsuya Akutsu is affiliated with the following schools: