Terry Gaasterland
#72,437
Most Influential Person Now
Professor of Computational Biology and GenomicsDirector, Scripps Genome Center
Why Is Terry Gaasterland Influential?
(Suggest an Edit or Addition)According to Wikipedia, Theresa Gaasterland is an American politician and scientist. She is a Professor of Computational Biology and Genomics and Director of the Scripps Genome Center at the University of California, San Diego . She was elected a Fellow of the International Society for Computational Biology in 2018 for outstanding contributions to the fields of computational biology and bioinformatics.
Terry Gaasterland's Published Works
Published Works
- Minimum information about a microarray experiment (MIAME)—toward standards for microarray data (2001) (4145)
- Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs (2002) (1543)
- The complete genome of the hyperthermophilic bacterium Aquifex aeolicus (1998) (1091)
- The Genome of the Sea Urchin Strongylocentrotus purpuratus (2006) (1056)
- The small RNA profile during Drosophila melanogaster development. (2003) (1002)
- The complete genome of the crenarchaeon Sulfolobus solfataricus P2 (2001) (808)
- Functional annotation of a full-length mouse cDNA collection (2001) (682)
- The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation (2007) (605)
- An RNA map predicting Nova-dependent splicing regulation (2006) (552)
- Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets (2004) (449)
- Reprogramming of the Macrophage Transcriptome in Response to Interferon-γ and Mycobacterium tuberculosis (2001) (437)
- The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba (2002) (403)
- Structural genomics: beyond the Human Genome Project (1999) (375)
- Reprogramming of the macrophage transcriptome in response to interferon-gamma and Mycobacterium tuberculosis: signaling roles of nitric oxide synthase-2 and phagocyte oxidase. (2001) (346)
- Spliced leader RNA trans-splicing in dinoflagellates (2007) (338)
- Complete Sequence of a 184-Kilobase Catabolic Plasmid from Sphingomonas aromaticivorans F199 (1999) (324)
- Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana (2005) (280)
- Common Variants at 9p21 and 8q22 Are Associated with Increased Susceptibility to Optic Nerve Degeneration in Glaucoma (2012) (273)
- Prediction and Identification of Herpes Simplex Virus 1-Encoded MicroRNAs (2006) (243)
- Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome. (2003) (208)
- Genome-wide association analysis identifies TXNRD2, ATXN2 and FOXC1 as susceptibility loci for primary open angle glaucoma (2015) (190)
- An overview of cooperative answering (1992) (179)
- Standards for Microarray Data (2002) (157)
- DarkHorse: a method for genome-wide prediction of horizontal gene transfer (2007) (153)
- Microbial genescapes: phyletic and functional patterns of ORF distribution among prokaryotes. (1998) (140)
- Metabolic versatility of the Riftia pachyptila endosymbiont revealed through metagenomics. (2008) (133)
- A functional update of the Escherichia coli K-12 genome (2001) (130)
- CTCF Regulates Ataxin-7 Expression through Promotion of a Convergently Transcribed, Antisense Noncoding RNA (2011) (127)
- Fully automated genome analysis that reflects user needs and preferences. A detailed introduction to the MAGPIE system architecture. (1996) (118)
- The metabolic pathway collection from EMP: the enzymes and metabolic pathways database (1996) (106)
- MAGPIE: automated genome interpretation. (1996) (105)
- Systematic characterization of the zinc-finger-containing proteins in the mouse transcriptome. (2003) (104)
- Association of CAV1/CAV2 genomic variants with primary open-angle glaucoma overall and by gender and pattern of visual field loss. (2014) (91)
- Monitoring genome‐wide changes in gene expression in response to endogenous cytokinin reveals targets in Arabidopsis thaliana (2003) (88)
- Cooperative Answering through Controlled Query Relaxation (1997) (86)
- Relaxation as a platform for cooperative answering (1992) (86)
- Organizational characteristics and information content of an archaeal genome: 156kb of sequence from Sulfolobus solfataricus P2 (1996) (86)
- The WNT receptor FZD7 is required for maintenance of the pluripotent state in human embryonic stem cells (2014) (85)
- Splice variation in mouse full-length cDNAs identified by mapping to the mouse genome. (2002) (78)
- Genomic Insights into Mn(II) Oxidation by the Marine Alphaproteobacterium Aurantimonas sp. Strain SI85-9A1 (2008) (77)
- Making the most of microarray data (2000) (77)
- CDKN2B-AS1 genotype-glaucoma feature correlations in primary open-angle glaucoma patients from the United States. (2013) (76)
- Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process (2014) (75)
- Microarray-based analysis of early development in Xenopus laevis. (2001) (73)
- PPAR-δ is repressed in Huntington's disease, is required for normal neuronal function and can be targeted therapeutically (2015) (73)
- Alternative splicing of mouse transcription factors affects their DNA-binding domain architecture and is tissue specific (2004) (72)
- Extensive and Genome-Wide Changes in the Transcription Profile of Staphylococcus aureus Induced by Modulating the Transcription of the Cell Wall Synthesis Gene murF (2006) (72)
- Enolase from Trypanosoma brucei, from the amitochondriate protist Mastigamoeba balamuthi, and from the chloroplast and cytosol of Euglena gracilis: pieces in the evolutionary puzzle of the eukaryotic glycolytic pathway. (2000) (71)
- Let-7 coordinately suppresses components of the amino acid sensing pathway to repress mTORC1 and induce autophagy. (2014) (69)
- The genome of the Gram-positive metal- and sulfate-reducing bacterium Desulfotomaculum reducens strain MI-1. (2010) (68)
- Constructing multigenome views of whole microbial genomes. (1998) (64)
- Illumina mate-paired DNA sequencing-library preparation using Cre-Lox recombination (2011) (62)
- Homology-based annotation yields 1,042 new candidate genes in the Drosophila melanogaster genome (2001) (61)
- Genomic resources for songbird research and their use in characterizing gene expression during brain development (2007) (61)
- The NEIGHBOR Consortium Primary Open-Angle Glaucoma Genome-wide Association Study: Rationale, Study Design, and Clinical Variables (2013) (60)
- Completing the sequence of the Sulfolobus solfataricus P2 genome (1998) (58)
- WNT5A Encodes Two Isoforms with Distinct Functions in Cancers (2013) (56)
- Endogenous WNT Signaling Regulates hPSC-Derived Neural Progenitor Cell Heterogeneity and Specifies Their Regional Identity (2014) (55)
- Construction of a medicinal leech transcriptome database and its application to the identification of leech homologs of neural and innate immune genes (2010) (55)
- Structural genomics: Bioinformatics in the driver's seat (1998) (55)
- Exome Analysis Identified a Novel Mutation in the RBP4 Gene in a Consanguineous Pedigree with Retinal Dystrophy and Developmental Abnormalities (2012) (53)
- Estrogen pathway polymorphisms in relation to primary open angle glaucoma: An analysis accounting for gender from the United States (2013) (51)
- The medicinal leech genome encodes 21 innexin genes: different combinations are expressed by identified central neurons (2012) (50)
- New York-Structural GenomiX Research Consortium (NYSGXRC): A Large Scale Center for the Protein Structure Initiative (2005) (50)
- Identification of a novel mutation in the CDHR1 gene in a family with recessive retinal degeneration. (2012) (48)
- Reconstruction of Metabolic Networks Using Incomplete Information (1995) (45)
- Nicotinamide Pathway-Dependent Sirt1 Activation Restores Calcium Homeostasis to Achieve Neuroprotection in Spinocerebellar Ataxia Type 7 (2019) (45)
- A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm (2008) (45)
- The WNT target SP5 negatively regulates WNT transcriptional programs in human pluripotent stem cells (2017) (45)
- Assessing the Association of Mitochondrial Genetic Variation With Primary Open-Angle Glaucoma Using Gene-Set Analyses (2016) (41)
- Characterization of the Small RNA Transcriptome of the Diatom, Thalassiosira pseudonana (2011) (41)
- An open letter to the scientific journals (2002) (40)
- Multiple Changes in Peptide and Lipid Expression Associated with Regeneration in the Nervous System of the Medicinal Leech (2011) (39)
- The Phylogenetic Position of the Pelobiont Mastigamoeba balamuthi Based on Sequences of rDNA and Translation Elongation Factors EF-1α and EF-2 (2002) (38)
- Presence of Prokaryotic and Eukaryotic Species in All Subgroups of the PPi-Dependent Group II Phosphofructokinase Protein Family (2001) (38)
- Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology (1996) (36)
- Structural genomics taking shape. (1998) (35)
- Automated querying and identification of novel peptides using MALDI mass spectrometric imaging. (2011) (35)
- Prediction of Cyclin-Dependent Kinase Phosphorylation Substrates (2007) (33)
- Analysis of SOX2-Expressing Cell Populations Derived from Human Pluripotent Stem Cells (2013) (33)
- A Common Variant in MIR182 Is Associated With Primary Open-Angle Glaucoma in the NEIGHBORHOOD Consortium (2016) (31)
- Identification of transcription coactivator OCA-B-dependent genes involved in antigen-dependent B cell differentiation by cDNA array analyses (2003) (29)
- Qualified Answers That Reflect User Needs and Preferences (1994) (29)
- DNA copy number variants of known glaucoma genes in relation to primary open-angle glaucoma. (2014) (28)
- Computational prediction and experimental validation of Ciona intestinalis microRNA genes (2007) (28)
- Hypothesis-independent pathway analysis implicates GABA and Acetyl-CoA metabolism in primary open-angle glaucoma and normal-pressure glaucoma (2014) (27)
- A computational investigation of kinetoplastid trans-splicing (2005) (25)
- A Cooperative Answering System (1992) (23)
- A Common Variant in MIR182 Is Associated With Primary Open-Angle Glaucoma in the NEIGHBORHOOD Consortium (2016) (23)
- Generation of an expandable intermediate mesoderm restricted progenitor cell line from human pluripotent stem cells (2015) (21)
- Association of a Primary Open-Angle Glaucoma Genetic Risk Score With Earlier Age at Diagnosis. (2019) (21)
- Research article - The genome of the sea urchin Strongylocentrotus purpuratus (2006) (21)
- Microbial genescapes: a prokaryotic view of the yeast genome. (1998) (19)
- The Sulfolobus solfataricus P2 genome project (1996) (19)
- SMASHing regulatory sites in DNA by human-mouse sequence comparisons (2003) (19)
- Vespucci: a system for building annotated databases of nascent transcripts (2013) (18)
- Restricting query relaxation through user constraints (1993) (18)
- PPARδ repression in Huntington’s disease and its essential role in CNS translate into a potent agonist therapy (2015) (17)
- An organism-specific method to rank predicted coding regions in Trypanosoma brucei. (2003) (17)
- Biomedical Impact of Splicing Mutations Revealed through Exome Sequencing (2012) (17)
- Selecting Tense, Aspect, and Connecting Words In Language Generation (1995) (17)
- MOLECULAR CHARACTERIZATION OF A PHOSPHATE‐REGULATED CELL‐SURFACE PROTEIN FROM THE COCCOLITHOPHORID, EMILIANIA HUXLEYI (PRYMNESIOPHYCEAE) 1 (2006) (17)
- Genetic correlations between intraocular pressure, blood pressure and primary open-angle glaucoma: a multi-cohort analysis (2017) (15)
- Complete sequence of a 184 kb catabolic plasmid from Sphingomonas aromaticivorans strain F199. (1999) (14)
- Generating cooperative answers in deductive databases (1992) (14)
- Qualifying Answers According to User Needs and Preferences (1997) (14)
- Top-Down Atmospheric Ionization Mass Spectrometry Microscopy Combined With Proteogenomics. (2017) (13)
- Gene content and organization of a 281-kbp contig from the genome of the extremely thermophilic archaeon, Sulfolobus solfataricus P2. (2000) (13)
- Computational Principles of Primer Design for Site Directed Mutagenesis (2005) (13)
- User Needs and Language Generation Issues in a Cooperative Answering System (1991) (13)
- Testosterone Pathway Genetic Polymorphisms in Relation to Primary Open-Angle Glaucoma: An Analysis in Two Large Datasets (2018) (12)
- The underlying principles of scientific publication. (2002) (12)
- ISCB’s initial reaction to New England Journal of Medicine editorial on data sharing (2016) (11)
- Deductive database systems and knowledge base systems (1990) (11)
- ISCB’s Initial Reaction to The New England Journal of Medicine Editorial on Data Sharing (2016) (10)
- Mild Iron Overload in an African American Man with SLC40A1 D270V (2012) (10)
- Implementing a Bioinformatics Pipeline (BIP) on a Mediator Platform: Comparing Cost and Quality of Alternate Choices (2006) (9)
- Databases for Comparative Analysis of Human-Mouse Orthologous Alternative Splicing (2004) (8)
- Assigning Function to CDS Through Qualified Query Answering: Beyond Alignment and Motifs (1994) (8)
- Exploiting aspectual features and connecting words for summarization-inspired temporal-relation extraction (2007) (7)
- Distribution of Alternatively Spliced Transcript Isoforms within Human and Mouse Transcriptomes (2011) (7)
- Novel Dormancy Mechanism of Castration Resistance in Bone Metastatic Prostate Cancer Organoids (2022) (6)
- Genomic insights into evolution. (2002) (6)
- Cooperative answers in database systems (1993) (6)
- Constraints on the Generation of Tense, Aspect, and Connecting Words from Temporal Expressions (2002) (6)
- Age at natural menopause genetic risk score in relation to age at natural menopause and primary open-angle glaucoma in a US-based sample (2017) (6)
- Special issue on data management, analysis, and mining for the life sciences (2005) (5)
- Selective activation of FZD7 promotes mesendodermal differentiation of human pluripotent stem cells (2020) (5)
- Summarization-Inspired Temporal-Relation Extraction: Tense-Pair Templates and Treebank-3 Analysis (2006) (4)
- Cooperative Explanation in Deductive Databases (1992) (4)
- Using integrity constraints to control search in knowledge base systems (1993) (4)
- Characterizing the relationship between protein-fusion and gene co-expression. (2001) (4)
- Bioinformatics: Genomic Data Representation through Images - MAGPIE as an Example (2007) (4)
- Dynamic transcriptome landscape in the song nucleus HVC between juvenile and adult zebra finches (2020) (3)
- This special issue comprises the papers accepted for presentationat the 19th Annual International Conference on Intelligent Systemsfor Molecular Biology, joint with the 10th European Conference onComputational Biology, an official conference of the InternationalSociety for Computational Biology. (2011) (3)
- MAGPIE: A Multipurpose Automated Genome Project Investigation Environment for Ongoing Sequencing Projects (1998) (3)
- The role of integrated databases in microbial genome sequence analysis and metabolic reconstruction (1997) (3)
- A Machine Learning Method to Identify Genetic Variants Potentially Associated With Alzheimer’s Disease (2021) (3)
- Exome Analysis Identified A Novel Mutation In A Family With Recessive Retinal Degeneration (2012) (3)
- ISMB-97 : proceedings : Fifth International Conference on Intelligent Systems for Molecular Biology (1997) (3)
- Chapter 17. Genomic Data Representation through Images-Magpie as an Example (2001) (2)
- Dominance of Sulfurospirillum in Metagenomes Associated with the Methane Ice Worm (Sirsoe methanicola) (2022) (2)
- Paving the future: finding suitable ISMB venues (2012) (2)
- Prediction of Cyclin-Dependent Kinase Phosphorylation (2007) (2)
- Author Correction: Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases (2019) (2)
- Reflecting time in generated text: tense, aspect and temporal connecting words (1992) (2)
- Hypothesis-independent pathway analysis implicates GABA and Acetyl-CoA metabolism in primary open-angle glaucoma and normal-pressure glaucoma (2014) (2)
- Using Multiple Tools for Automated Genome Interpretation in an Integrated Environment (1996) (2)
- Mathematical and Computational Oncology: Third International Symposium, ISMCO 2021, Virtual Event, October 11–13, 2021, Proceedings (2021) (1)
- Alternative Splicing in the Fly and the Worm: Splicing Databases for Drosophila melanogaster and Caenorhabditis elegans (2011) (1)
- Neural Networks and Genome Informatics: Cathy H. Wu and Jerry W. McLarty, Elsevier Science Ltd, July 2000, ISBN: 0080428002 (2001) (1)
- A structural genomics pilot project based on gene targets selected from Escherichia coli (2001) (1)
- Genome and Transcriptome Sequence Databases for Discovery, Storage, and Representation of Alternative Splicing Events (2013) (1)
- Using Semantic Information for Processing Negation and Disjunction in Logic Programs (1993) (1)
- Electric genes (1999) (1)
- Editorial overview: Genomes and evolution Ships in the night? (2001) (1)
- SMASHing regulatory sites in DNA by human. (2003) (1)
- Processing negation and disjunction in logic programs through integrity constraints (1993) (1)
- Special RECOMB 2002 Issue (2004) (0)
- High-Fidelity Mapping Of Exome Sequences Improves Outcomes In Eye Disease Studies (2011) (0)
- Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, St. Louis, MO, USA, June 12-15 1996 (1996) (0)
- The Sulfolobus solfataricus P2 genome project (vol 389, pg 88, 1996) (1996) (0)
- Genetic Association and Linkage at Putative Risk Loci for Primary Open-angle Glaucoma (2016) (0)
- Abstract 1789: Pre-clinical studies to advance anti-ROR1 CAR-T cell therapy for metastatic prostate cancer (2023) (0)
- ISMB Conference Funding to Support Attendance of Early Researchers and Students (2014) (0)
- Gene expression meets genome annotation (1999) (0)
- Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases (2018) (0)
- Automated Genome Annotation and Comparative Genomics (2001) (0)
- MP33-03 DORMANT CASTRATION-RESISTANT PROSTATE CANCER ORGANOIDS WITH HYBRID BASAL-LUMINAL CELLS AND LOSS OF SARS-COV-2 HOST FACTORS EMERGED UNDER ANDROGEN DEPRIVATION (2021) (0)
- Identification of disease-associated genome variants in regulatory regions using exome sequencing in 295 POAG cases (2014) (0)
- Sequences and topology genomic insights into evolution (2002) (0)
- MAGPIE: Automating Whole Genome Analysis (1996) (0)
- Constraints on the Generation ofTense , Aspect , and Connecting Wordsfrom Temporal (2002) (0)
- Erratum: The Sulfolobus solfataricus P2 genome project (FEBS letters 389 (1996) (88-91)) (PII S001457939600525X) (1996) (0)
- Cooperative Answering with Deductive Databases (2007) (0)
- Genetics DNA Copy Number Variants of Known Glaucoma Genes in Relation to Primary Open-Angle Glaucoma (2014) (0)
- Identification of Shadow Exons: Mining for Alternative Exons in Human, Mouse and Rat Comparative Databases (2009) (0)
- Defining a Transcriptional Regulatory Network for Peroxisome Biogenesis (2016) (0)
- Separating fact from fiction science (2001) (0)
- Author response: Selective activation of FZD7 promotes mesendodermal differentiation of human pluripotent stem cells (2020) (0)
- Molecular mechanisms in Primary Glaucoma: POAG-associated variant disrupts microRNA regulation of CDKN2B expression (2013) (0)
- PD04-10 PRE-CLINICAL STUDIES TO ADVANCE ZILOVERTAMAB-BASED ANTI-ROR1 DUAL SPECIFICITY CAR T-CELL THERAPY FOR METASTATIC PROSTATE CANCER. (2023) (0)
- Erratum (1937) (0)
- ISCB’s initial reaction to New England Journal of Medicine editorial on data sharing (2016) (0)
- The WNT target SP5 negatively regulates WNT transcriptional programs in human pluripotent stem cells (2017) (0)
- Basal-Luminal Hybrid Cells Emerge as a New Dormant, Androgen Pathway Directed Therapy-Resistant Population in Patient-Derived Prostate Cancer Organoids (2021) (0)
- A case study of a novel summer bridge program to prepare transfer students for research in biological sciences (2022) (0)
- PD07-04 PRE-CLINICAL STUDIES FOR ADVANCING CIRMTUZUMAB-BASED ANTI-ROR1 THERAPIES IN METASTATIC PROSTATE CANCER (2022) (0)
- Author Correction: Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases (2019) (0)
- Editorial overview: Genomic insights into evolution (2002) (0)
- ISMB 2008 Organization (2008) (0)
- GENOMIC ANALYSIS OF A LONGITUDINAL SERIES OF SURGICAL PROSTATE CANCER BONE METASTASES AND XENOGRAFTS FROM THE SAME PATIENT REVEALED SELECTION OF A PROGRESSIVELY THERAPY RESISTANT METASTATIC CLONE: MP87‐10 (2017) (0)
- [Invited Lecture] Automated genome analysis using MAGPIE (1998) (0)
- Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, Halkidiki, Greece, June 21-26, 1997 (1997) (0)
- Identification Of A Gene Mutation In An Arrp Family By Exome Analysis (2011) (0)
- MP68-18 ENZALUTAMIDE TREATMENT RESULTS IN ANTI-ANDROGEN RESISTANCE IN PATIENT-DERIVED BONE METASTATIC PROSTATE CANCER MODELS (2019) (0)
- Coherent Cooperative Answers in Deductive Databases (1992) (0)
- An Experimental Distributed Deductive Database System (1995) (0)
- of the Macrophage Transcriptome in Response to Interferon- (cid:2) and Mycobacterium tuberculosis : Signaling Roles of Nitric Oxide Synthase-2 and Phagocyte Oxidase (2001) (0)
- AA Amyloidosis In Island Foxes (Urocyon Littoralis): Pathology, Risk Factors, And The Genetic Basis For Disease (2016) (0)
- The medicinal leech genome encodes 21 innexin genes: different combinations are expressed by identified central neurons (2012) (0)
- Region Adh Drosophila melanogaster MAGPIE / EGRET Annotation of the 2 . 9-Mb (2000) (0)
- Overview of selected molecular biological databases (1994) (0)
- Mapping of peptides and proteins in Leech (Hirudo medicinalis) by Mass Spectrometry Imaging (2010) (0)
- MAGPIE : A Responsive System for Data Collection and Analysis (1996) (0)
- Honaucin A, mechanism of action and role as a potential cancer prevention agent (2015) (0)
- Microarray analysis made simple (2003) (0)
- Study of diseased and normal optic nerve and retina to identify microRNAs involved in glaucomatous optic neuropathy (2015) (0)
- Analyses of low-frequency and rare variants associated with intraocular pressure (2016) (0)
- Genetic Analysis Of Simplex Retinal Dystrophy Patients Using Exome Sequencing (2012) (0)
- Parameterized Analysis of Weighted Variants in Blended Cohorts Optimizes Analysis of Exomes from Primary Open Angle Glaucoma Cases from the NEIGHBOR Study (2012) (0)
- Author response: Generation of an expandable intermediate mesoderm restricted progenitor cell line from human pluripotent stem cells (2015) (0)
- MP90-06 FULL EXOME SEQUENCING, COPY NUMBER VARIATION AND TRANSCRIPTOME ANALYSES REVEALS DIVERSITY AND MUTATIONAL EVOLUTION IN A LONGITUDINAL SERIES OF SURGICAL PROSTATE CANCER BONE METASTASES FROM A PATIENT WITH PROGRESSIVELY THERAPY-RESISTANT CANCER. (2016) (0)
- A guide for the bioinformatics novice (1999) (0)
- A road less traveled: deciphering the genome of a differently evolved eukaryote (2003) (0)
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What Schools Are Affiliated With Terry Gaasterland?
Terry Gaasterland is affiliated with the following schools: