Tomoko Ohta
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Tomoko Ohtacomputer-science Degrees
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Tomoko Ohtabiology Degrees
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Computer Science Biology
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(Suggest an Edit or Addition)Tomoko Ohta's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- GENIA corpus - a semantically annotated corpus for bio-textmining (2003) (1184)
- brat: a Web-based Tool for NLP-Assisted Text Annotation (2012) (1148)
- Overview of BioNLP’09 Shared Task on Event Extraction (2009) (660)
- Developing a Robust Part-of-Speech Tagger for Biomedical Text (2005) (544)
- Corpus annotation for mining biomedical events from literature (2008) (418)
- The GENIA corpus: an annotated research abstract corpus in molecular biology domain (2002) (312)
- Overview of BioNLP Shared Task 2011 (2011) (253)
- Overview of BioNLP Shared Task 2013 (2013) (206)
- Syntax Annotation for the GENIA Corpus (2005) (137)
- Event extraction across multiple levels of biological organization (2012) (124)
- Semantic Retrieval for the Accurate Identification of Relational Concepts in Massive Textbases (2006) (123)
- The GENIA project: corpus-based knowledge acquisition and information extraction from genome research papers (1999) (93)
- BioCause: Annotating and analysing causality in the biomedical domain (2013) (81)
- Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011 (2012) (81)
- New challenges for text mining: mapping between text and manually curated pathways (2008) (73)
- EXTRACTING BIO‐MOLECULAR EVENTS FROM LITERATURE—THE BIONLP’09 SHARED TASK (2011) (65)
- Open-domain Anatomical Entity Mention Detection (2012) (63)
- Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013 (2015) (61)
- BioNLP Shared Task 2011: Supporting Resources (2011) (59)
- Overview of the Epigenetics and Post-translational Modifications (EPI) task of BioNLP Shared Task 2011 (2011) (55)
- Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011 (2011) (55)
- Automatic Construction of Predicate-argument Structure Patterns for Biomedical Information Extraction (2006) (54)
- Overview of the Cancer Genetics (CG) task of BioNLP Shared Task 2013 (2013) (53)
- Overview of the Pathway Curation (PC) task of BioNLP Shared Task 2013 (2013) (52)
- Incorporating GENETAG-style annotation to GENIA corpus (2009) (45)
- A method for integrating and ranking the evidence for biochemical pathways by mining reactions from text (2013) (42)
- Static Relations: a Piece in the Biomedical Information Extraction Puzzle (2009) (41)
- An Intelligent Search Engine and GUI-based Efficient MEDLINE Search Tool Based on Deep Syntactic Parsing (2006) (41)
- Wide coverage biomedical event extraction using multiple partially overlapping corpora (2013) (37)
- Building an Annotated Corpus in the Molecular-Biology Domain (2000) (34)
- Combining Multiple Layers of Syntactic Information for Protein-Protein Interaction Extraction (2008) (34)
- Overview of the Entity Relations (REL) supporting task of BioNLP Shared Task 2011 (2011) (31)
- rpoS Function Is Essential forbgl Silencing Caused by C-Terminally Truncated H-NS inEscherichia coli (1999) (25)
- Linguistic scope-based and biological event-based speculation and negation annotations in the BioScope and Genia Event corpora (2011) (24)
- Cell line name recognition in support of the identification of synthetic lethality in cancer from text (2015) (24)
- AKANE System : Protein-Protein Interaction 1 AKANE System : Protein-Protein Interaction Pairs in the BioCreAtIvE 2 Challenge , PPI-IPS subtask (2007) (21)
- From Pathways to Biomolecular Events: Opportunities and Challenges (2011) (21)
- Annotation of Predicate-argument Structure on Molecular Biology Text (2004) (19)
- Medie and Info-pubmed: 2010 update (2010) (18)
- A Re-Evaluation of Biomedical Named Entity-Term Relations (2010) (18)
- Event extraction for DNA methylation (2011) (17)
- U-Compare bio-event meta-service: compatible BioNLP event extraction services (2011) (17)
- PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations (2012) (16)
- Event Extraction for Post-Translational Modifications (2010) (14)
- From Text to Pathway: Corpus Annotation for Knowledge Acquisition from Biomedical Literature (2007) (13)
- Integration of Static Relations to Enhance Event Extraction from Text (2010) (13)
- Towards Event Extraction from Full Texts on Infectious Diseases (2010) (13)
- Towards exhaustive protein modification event extraction (2011) (13)
- Improving the Inter-Corpora Compatibility for protein Annotations (2010) (12)
- A Robust Retrieval Engine for Proximal and Structural Search (2003) (11)
- Corpus-Based Approach to Biological Entity Recognition (2004) (11)
- Encoding Biomedical Resources in TEI: The Case of the GENIA Corpus (2003) (10)
- The GENIA Project (2000) (10)
- Typed Entity and Relation Annotation on Computer Science Papers (2016) (10)
- Text Mining Supporting Search for Knowledge Discovery in Diabetes (2013) (9)
- Bridging the Gap Between Scope-based and Event-based Negation/Speculation Annotations: A Bridge Not Too Far (2012) (8)
- Pathway Curation Support as an Information Extraction Task (2011) (8)
- Towards Exhaustive Event Extraction for Protein Modifications (2011) (8)
- Ontology design patterns to disambiguate relations between genes and gene products in GENIA (2011) (7)
- An analysis of gene/protein associations at PubMed scale (2011) (7)
- Encoding schemes for the corpus and annotation (2006) (6)
- Anatomical Entity Recognition with Open Biomedical Ontologies (2011) (6)
- Linguistic scope-based and biological event-based speculation and negation annotations in the Genia Event and BioScope corpora (2010) (6)
- Degassing behavior of noble gases from groundwater during groundwater sampling (2019) (5)
- A Semantically Annotated Corpus from MEDLINE Abstracts (1999) (5)
- Ontology Based Corpus Annotation and Tools (2001) (5)
- Linguistic and Biological Annotations of Biological Interaction Events (2006) (4)
- Applying ontology design patterns to the implementation of relations in GENIA (2010) (4)
- Building Patterns for Biomedical Event Extraction (2004) (3)
- An Ontology for Biological Reaction Events (1999) (3)
- New Resources and Perspectives for Biomedical Event Extraction (2012) (2)
- Wide coverage biomedical event extraction using multiple partially overlapping corpora (2013) (1)
- Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011 (2012) (1)
- Multilevel Annotation for Information Extraction (2010) (1)
- Stretching TEI: Converting the Genia Corpus (2003) (1)
- Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013 (2015) (1)
- BioCause: Annotating and analysing causality in the biomedical domain (2013) (1)
- S1000: A better taxonomic name corpus for biomedical information extraction (2023) (0)
- Pathway Curation (PC) task at BioNLP Shared Task 2013 Task Proposal (2012) (0)
- Identifying Gene Mentions by Case-Based Classification (2007) (0)
- A comparison of knowledge resource designs : supporting term-level text annotation (2008) (0)
- XPG p 1 protein interacts with multiple subunits of TFIIH prot and with CSB p 2 protein (2008) (0)
- Ontology Based Corpus Annotation 1 Ontology Based Corpus Annotation and Tools (2001) (0)
- Demystifying protein annotations : toward increasing the compatibility of different corpora (2009) (0)
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