Tong Zhu
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Tong Zhucomputer-science Degrees
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Computer Science
Tong Zhu's Degrees
- PhD Computer Science Stanford University
- Masters Computer Science Stanford University
- Bachelors Computer Science Tsinghua University
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(Suggest an Edit or Addition)Tong Zhu's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Orchestrated transcription of key pathways in Arabidopsis by the circadian clock. (2000) (1620)
- Transcriptome Changes for Arabidopsis in Response to Salt, Osmotic, and Cold Stress1,212 (2002) (1513)
- Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses (2002) (1004)
- Transcriptional Profiling Reveals Novel Interactions between Wounding, Pathogen, Abiotic Stress, and Hormonal Responses in Arabidopsis1,212 (2002) (869)
- Quantitative Nature of Arabidopsis Responses during Compatible and Incompatible Interactions with the Bacterial Pathogen Pseudomonas syringae Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.007591. (2003) (756)
- Crosstalk between cytosolic and plastidial pathways of isoprenoid biosynthesis in Arabidopsis thaliana (2003) (642)
- The transcriptome of rhizobacteria-induced systemic resistance in arabidopsis. (2004) (533)
- Topology of the network integrating salicylate and jasmonate signal transduction derived from global expression phenotyping. (2003) (513)
- Enhanced haze pollution by black carbon in megacities in China (2016) (494)
- Multiple transcription-factor genes are early targets of phytochrome A signaling (2001) (489)
- Large-scale identification of single-feature polymorphisms in complex genomes. (2003) (390)
- Expression Profiles of Arabidopsis thaliana in Mineral Deficiencies Reveal Novel Transporters Involved in Metal Homeostasis* (2003) (377)
- Diverse RNA viruses elicit the expression of common sets of genes in susceptible Arabidopsis thaliana plants. (2003) (366)
- Comparative transcriptomics of rice reveals an ancient pattern of response to microbial colonization (2005) (365)
- Expression profiling reveals COI1 to be a key regulator of genes involved in wound- and methyl jasmonate-induced secondary metabolism, defence, and hormone interactions (2005) (308)
- Networks of transcription factors with roles in environmental stress response. (2004) (272)
- A High-Density Soybean Genetic Map Based on AFLP Markers (1997) (244)
- Distinct regulation of salinity and genotoxic stress responses by Arabidopsis MAP kinase phosphatase 1 (2002) (230)
- Characterization of the Early Response of Arabidopsis to Alternaria brassicicola Infection Using Expression Profiling[w] (2003) (228)
- Expression profiling of phyB mutant demonstrates substantial contribution of other phytochromes to red-light-regulated gene expression during seedling de-etiolation. (2004) (208)
- Targeted manipulation of maize genes in vivo using chimeric RNA/DNA oligonucleotides. (1999) (205)
- The response regulator 2 mediates ethylene signalling and hormone signal integration in Arabidopsis (2004) (204)
- SAUR39, a Small Auxin-Up RNA Gene, Acts as a Negative Regulator of Auxin Synthesis and Transport in Rice1[W] (2009) (200)
- Two type III effector genes of Xanthomonas oryzae pv. oryzae control the induction of the host genes OsTFIIAγ1 and OsTFX1 during bacterial blight of rice (2007) (194)
- Genome-wide analysis of Arabidopsis responsive transcriptome to nitrogen limitation and its regulation by the ubiquitin ligase gene NLA (2007) (193)
- Global transcription profiling reveals differential responses to chronic nitrogen stress and putative nitrogen regulatory components in Arabidopsis (2007) (191)
- Trait stacking in transgenic crops: Challenges and opportunities (2010) (182)
- Genetic analysis of Arabidopsis GATA transcription factor gene family reveals a nitrate-inducible member important for chlorophyll synthesis and glucose sensitivity. (2005) (180)
- Ubiquitination-mediated protein degradation and modification: an emerging theme in plant-microbe interactions (2006) (171)
- A Putative CCAAT-Binding Transcription Factor Is a Regulator of Flowering Timing in Arabidopsis1[C][W][OA] (2007) (153)
- Transcriptional control of nutrient partitioning during rice grain filling. (2002) (143)
- Gene Expression Phenotypes of Arabidopsis Associated with Sensitivity to Low Temperatures[w] (2003) (141)
- Increased nitrogen-use efficiency in transgenic rice plants over-expressing a nitrogen-responsive early nodulin gene identified from rice expression profiling. (2009) (139)
- Genome-wide expression profiling of maize in response to individual and combined water and nitrogen stresses (2013) (139)
- The APETALA-2-Like Transcription Factor OsAP2-39 Controls Key Interactions between Abscisic Acid and Gibberellin in Rice (2010) (137)
- Large-scale profiling of the Arabidopsis transcriptome. (2000) (133)
- AtNUDT7, a Negative Regulator of Basal Immunity in Arabidopsis, Modulates Two Distinct Defense Response Pathways and Is Involved in Maintaining Redox Homeostasis1[C][OA] (2007) (132)
- Autophagy regulated by day length determines the number of fertile florets in wheat. (2008) (129)
- EMF Genes Maintain Vegetative Development by Repressing the Flower Program in Arabidopsis Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.007831. (2003) (129)
- Expression profiling of rice segregating for drought tolerance QTLs using a rice genome array (2005) (125)
- Transcriptome response to nitrogen starvation in rice (2012) (124)
- Toward elucidating the global gene expression patternsof developing Arabidopsis: Parallel analysis of 8 300 genesby a high-density oligonucleotide probe array (2001) (123)
- Phenotypic Anchoring of Gene Expression Changes during Estrogen-Induced Uterine Growth (2004) (121)
- Transcription Profiling of the Early Gravitropic Response in Arabidopsis Using High-Density Oligonucleotide Probe Microarrays1,212 (2002) (118)
- A High-Resolution Map of Arabidopsis Recombinant Inbred Lines by Whole-Genome Exon Array Hybridization (2006) (111)
- Maize AMEIOTIC1 is essential for multiple early meiotic processes and likely required for the initiation of meiosis (2009) (108)
- Gene Expression Signatures from Three Genetically Separable Resistance Gene Signaling Pathways for Downy Mildew Resistance1[w] (2004) (105)
- Microarray analysis of the transcriptome as a stepping stone towards understanding biological systems: practical considerations and perspectives. (2006) (104)
- Global analysis of gene expression using GeneChip microarrays. (2003) (95)
- Epigenetic Regulation of Gene Programs by EMF1 and EMF2 in Arabidopsis1[W][OA] (2009) (94)
- Diverse transcriptional programs associated with environmental stress and hormones in the Arabidopsis receptor-like kinase gene family. (2009) (93)
- Ethylene and hydrogen peroxide are involved in brassinosteroid-induced salt tolerance in tomato (2016) (90)
- EDM2 is required for RPP7-dependent disease resistance in Arabidopsis and affects RPP7 transcript levels. (2007) (88)
- Orchestration of hydrogen peroxide and nitric oxide in brassinosteroid-mediated systemic virus resistance in Nicotiana benthamiana. (2016) (88)
- Epigenetic regulation of transcription in intermediate heterochromatin (2006) (82)
- Effects of brassinosteroids on quality attributes and ethylene synthesis in postharvest tomato fruit (2015) (80)
- Rice Cytokinin GATA Transcription Factor1 Regulates Chloroplast Development and Plant Architecture1[W][OA] (2013) (80)
- Transcriptome analysis of nitrogen-efficient rice over-expressing alanine aminotransferase. (2009) (75)
- A Developmental Transcriptional Network for Maize Defines Coexpression Modules1[C][W][OA] (2013) (75)
- Ethylene is Involved in Brassinosteroids Induced Alternative Respiratory Pathway in Cucumber (Cucumis sativus L.) Seedlings Response to Abiotic Stress (2015) (74)
- A Gibberellin-Regulated Calcineurin B in Rice Localizes to the Tonoplast and Is Implicated in Vacuole Function1 (2005) (72)
- Role of brassinosteroid signaling in modulating Tobacco mosaic virus resistance in Nicotiana benthamiana (2016) (70)
- Mitochondrial alternative oxidase‐dependent autophagy involved in ethylene‐mediated drought tolerance in Solanum lycopersicum (2018) (67)
- Integrative analysis of transcript and metabolite profiling data sets to evaluate the regulation of biochemical pathways during photomorphogenesis. (2006) (66)
- The alternative respiratory pathway is involved in brassinosteroid-induced environmental stress tolerance in Nicotiana benthamiana (2015) (64)
- Transcription Profile Analyses Identify Genes and Pathways Central to Root Cap Functions in Maize (2006) (63)
- Contribution of transcriptional regulation to natural variations in Arabidopsis (2005) (62)
- Oligonucleotide array discovery of polymorphisms in cultivated tomato (Solanum lycopersicum L.) reveals patterns of SNP variation associated with breeding (2009) (57)
- Expression differences between normal and indeterminate1 maize suggest downstream targets of ID1, a floral transition regulator in maize. (2007) (57)
- The roles of autophagy in development and stress responses in Arabidopsis thaliana (2014) (54)
- Phytochrome Control of the Arabidopsis Transcriptome Anticipates Seedling Exposure to Lightw⃞ (2005) (47)
- Hypomethylated sequences: Characterization of the duplicate soybean genome (1994) (44)
- Abscisic acid-induced modulation of metabolic and redox control pathways in Arabidopsis thaliana. (2008) (41)
- Metabolic and co-expression network-based analyses associated with nitrate response in rice (2014) (40)
- Global Patterns of Gene Expression in the Aleurone of Wild-Type and dwarf1 Mutant Rice1[W] (2005) (40)
- Hydrogen Peroxide and Nitric Oxide Crosstalk Mediates Brassinosteroids Induced Cold Stress Tolerance in Medicago truncatula (2019) (36)
- Nitric oxide is involved in brassinosteroid-induced alternative respiratory pathway in Nicotiana benthamiana seedlings' response to salt stress. (2016) (33)
- Bacillus velezensis CC09: A Potential 'Vaccine' for Controlling Wheat Diseases. (2018) (32)
- Nitric oxide as a signaling molecule in brassinosteroid-mediated virus resistance to Cucumber mosaic virus in Arabidopsis thaliana. (2018) (32)
- The maize root stem cell niche: a partnership between two sister cell populations (2009) (32)
- Reduced expression of selected FASCICLIN-LIKE ARABINOGALACTAN PROTEIN genes associates with the abortion of kernels in field crops of Zea mays (maize) and of Arabidopsis seeds. (2018) (31)
- High-definition genome profiling for genetic marker discovery. (2007) (29)
- The STR120 satellite DNA of soybean: organization, evolution and chromosomal specificity (1997) (29)
- A single nuclear locus phylogeny of soybean based on DNA sequence (1995) (27)
- Adding saxagliptin to extended‐release metformin vs. uptitrating metformin dosage (2012) (27)
- Soybean chromosome painting: a strategy for somatic cytogenetics. (1996) (27)
- Transcriptome response to phosphorus starvation in rice (2011) (26)
- Transcriptional responses to low temperature and their regulation in Arabidopsis (2003) (26)
- A novel transcriptomic approach to identify candidate genes for grain quality traits in wheat. (2009) (25)
- AtNUDT 7 , a Negative Regulator of Basal Immunity in Arabidopsis , Modulates Two Distinct Defense Response Pathways and Is Involved in Maintaining Redox Homeostasis 1 [ C ] [ OA ] (2007) (25)
- Sperm Identification in Maize by Fluorescence in Situ Hybridization. (1996) (23)
- Nitrate reductase-dependent nitric oxide production is required for regulation alternative oxidase pathway involved in the resistance to Cucumber mosaic virus infection in Arabidopsis (2015) (23)
- Ribosomal RNA genes in soybean and common bean: chromosomal organization, expression, and evolution (1996) (22)
- Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs (2013) (21)
- Clustering and halogen effects enabled red/near-infrared room temperature phosphorescence from aliphatic cyclic imides (2021) (21)
- The asparagine-rich protein NRP interacts with the Verticillium effector PevD1 and regulates the subcellular localization of cryptochrome 2 (2017) (20)
- Genomic organization and evolution of the soybean SB92 satellite sequence (1995) (20)
- Analysis of Gene Expression during Brassica Seed Germination Using a Cross- Species Microarray Platform (2007) (18)
- A critical domain of Sweet potato chlorotic fleck virus nucleotide-binding protein (NaBp) for RNA silencing suppression, nuclear localization and viral pathogenesis. (2015) (18)
- Switching to electric vehicles can lead to significant reductions of PM2.5 and NO2 across China (2021) (18)
- Dynamics of Nuclear Pore Density and Distribution Patterns within Developing Pollen: Implications for a Functional Relationship Between the Vegetative Nucleus and the Generative Cell (1991) (18)
- Finding Unexpected Patterns in Microarray Data1 (2003) (16)
- Heritable paternal cytoplasmic organelles in alfalfa sperm cells: ultrastructural reconstruction and quantitative cytology. (1992) (16)
- Identification of nutrient partitioning genes participating in rice grain filling by singular value decomposition (SVD) of genome expression data (2003) (15)
- Gene Expression Microarrays: Improvements and Applications towards Agricultural Gene Discovery (2001) (15)
- Rice Cytokinin GATA Transcription Factor 1 Regulates Chloroplast Development and Plant Architecture. (2013) (15)
- Single feature polymorphisms between two rice cultivars detected using a median polish method (2009) (15)
- Loss of preimplantation embryo resulting from a Pum1 gene trap mutation. (2015) (14)
- Quantitative, three-dimensional analysis of alfalfa egg cells in two genotypes: Implications for biparental plastid inheritance (1993) (13)
- Mitochondrial alternative oxidase is involved in both compatible and incompatible host-virus combinations in Nicotiana benthamiana. (2015) (13)
- Association between exposure to polycyclic aromatic hydrocarbons and lipid peroxidation in patients with chronic obstructive pulmonary disease. (2021) (11)
- Paternal plastid inheritance in alfalfa: plastid nucleoid number within generative cells correlates poorly with plastid number and male plastid transmission trength (1991) (10)
- Characterization and application of soybean YACs to molecular cytogenetics (1996) (10)
- Multiphoton Absorption Iridium(III)-Organotin(IV) Dimetal Complex with AIE Behavior for Both Sensitive Detection of Tyrosine and Antibacterial Activity. (2020) (9)
- Detection byin-situ fluorescence of short, single-copy sequences of chromosomal DNA (1995) (8)
- Medicago truncatula genotypes Jemalong A17 and R108 show contrasting variations under drought stress. (2016) (8)
- Single-cell transcriptomic landscapes of the otic neuronal lineage at multiple early embryonic ages. (2022) (8)
- Quantitative cytology of the alfalfa generative cell and its relation to male plastid inheritance patterns in three genotypes (2004) (8)
- Generative cell composition and its relation to male plastid inheritance patterns inMedicago sativa (1990) (8)
- The zygote and proembryo of alfalfa: quantitative, three-dimensional analysis and implications for biparental plastid inheritance (1995) (7)
- The capsid protein p38 of turnip crinkle virus is associated with the suppression of cucumber mosaic virus in Arabidopsis thaliana co-infected with cucumber mosaic virus and turnip crinkle virus. (2014) (7)
- Analysis of differential gene expression by ligation specificity-based transcript profiling. (2002) (6)
- Bulked Segregant RNA-Seq Reveals Distinct Expression Profiling in Chinese Wheat Cultivar Jimai 23 Responding to Powdery Mildew (2020) (6)
- Ethylene‐induced NbMYB4L is involved in resistance against tobacco mosaic virus in Nicotiana benthamiana (2021) (6)
- Towards Better and Healthier Air Quality: Implementation of WHO 2021 Global Air Quality Guidelines in Asia (2022) (5)
- The Role of Photoreceptors in Response to Cucumber Mosaic Virus in Arabidopsis thaliana (2017) (5)
- The Asparagine-Rich Protein NRP Facilitates the Degradation of the PP6-type Phosphatase FyPP3 to Promote ABA Response in Arabidopsis. (2017) (5)
- Risk factors in air pollution exposome contributing to higher levels of TNFα in COPD patients. (2021) (5)
- A simple and rapid method for extraction and measurement of circulating sphingolipids using LC–MS/MS: a targeted lipidomic analysis (2022) (5)
- A more sensitive and rapid multiplex RT-PCR assay combining with magnetic nanobeads for simultaneous detection of viruses in sweet potato (2014) (5)
- Fine Tuning of Multiphoton AIE Emission Behavior, Organelle Targeting, and Fluorescence Lifetime Imaging of Terpyridine Derivatives by Alkyl Chain Engineering. (2022) (4)
- Target preparation for DNA microarray hybridization. (2006) (4)
- Resources and Opportunities Large-Scale Profiling of the Arabidopsis Transcriptome (2000) (4)
- Genetic Dissection of the Powdery Mildew Resistance in Wheat Breeding Line LS5082 Using BSR-Seq (2021) (4)
- Arachidonic acid metabolism and inflammatory biomarkers associated with exposure to polycyclic aromatic hydrocarbons. (2022) (3)
- Development and transdifferentiation into inner hair cells require Tbx2 (2022) (2)
- Coordination-Regulated Terpyridine-Mn(II) Complexes for Photodynamic Therapy Guided by Multiphoton Fluorescence/Magnetic Resonance Imaging. (2022) (2)
- Difference in ambient-personal exposure to PM2.5 and its inflammatory effect in local residents in urban and peri-urban Beijing, China: results of the AIRLESS project. (2020) (2)
- Lone-Pair-Induced Intra- and Interlayer Polarizations in Sillén-Aurivillius Layered Perovskite Bi4NbO8Br. (2022) (2)
- Turnip crinkle virus with nonviral gene cancels the effect of silencing suppressors of P19 and 2b in Arabidopsis thaliana (2014) (2)
- Metabolic and co-expression network-based analyses associated with nitrate response in rice (2014) (2)
- The capsid protein p 38 of turnip crinkle virus is associated with the suppression of cucumber mosaic virus in Arabidopsis thaliana co-infected with cucumber mosaic virus and turnip crinkle viru s (2014) (1)
- Beneficial Effects of Three Dietary Cyclodextrins on Preventing Fat Accumulation and Remodeling Gut Microbiota in Mice Fed a High-Fat Diet (2022) (1)
- Temperature inversions in China derived from sounding data from 1976 to 2015 (2021) (1)
- Time course transcriptomic analysis of the 17β-estradiol (17βE2)-regulated transcriptome in mouse uterus (1970) (1)
- Pan‐cancer multi‐omics analyses reveal crosstalk between the Hippo and immune signaling pathways in the tumor microenvironment (2021) (1)
- Genome-wide expression profiling of maize in response to individual and combined water and nitrogen stresses (2013) (1)
- Air Quality, Human Health and Climate Implications of China's Synthetic Natural Gas Development (2016) (1)
- Modulation of transcriptional networks in crop plants. (2007) (1)
- Independent and Combined Effects of Late-Pregnancy Exposure to Air Pollution and Extreme Temperature on Preterm Birth in China: A Nationwide Cohort Study (2022) (0)
- Susceptibility of Individuals with COPD to Air Pollution Exposure: A Case-Control Panel Study in Beijing, China (2018) (0)
- Environmental Factors And Risk For Congenital Heart Disease (2015) (0)
- Household Air Pollution and Urine Metabolomics in Tibet (2018) (0)
- Transcriptome response to nitrogen starvation in rice (2012) (0)
- Transcriptome response to phosphorus starvation in rice (2011) (0)
- Bioinformatics Finding Unexpected Patterns in Microarray Data 1 (2003) (0)
- Comparative Test of New Few-Seed Citrus reticulata var. ponkan cv. Jinshuigan Strain and C. reticulata var. ponkan cv Jinyou No.3 (2010) (0)
- Estimating annual residential exposure averages by extrapolating snapshot PM2.5 campaign results and translating ambient measurements (2019) (0)
- Personal exposure to PM2.5 and its inflammatory effect on local residents in urban and rural Beijing, China (2019) (0)
- Geographically Varied Associations between Hypertensive Disorders in Pregnancy and Particulate Matter in the Contiguous United States, 1999-2004 (2018) (0)
- Assessment of Household Air Pollution Exposure and Associated Health Effects from Burning Firewood and Yak Dung on the Eastern Tibetan Plateau (2018) (0)
- Sperm ldentification in Maize by Fluorescence in Situ Hybridization (2002) (0)
- Air Pollution, Aerosol, and Climate Interactions in Asia III (2018) (0)
- Advances in the Mechanistic Study of the Control of Oxidative Stress Injury by Modulating HDAC6 Activity (2023) (0)
- The roles of autophagy in development and stress responses in Arabidopsis thaliana (2014) (0)
- Identification and Evaluation of Wheat-Aegilops bicornis Lines with Resistance to Powdery Mildew and Stripe Rust. (2021) (0)
- Gene Expression Signatures from Three Genetically Separable Resistance Gene Signaling Pathways for Downy Mildew Resistance 1[w] (2004) (0)
- Defective mechanosensory transduction of the new inner hair cells prevents hearing recover in the damaged cochlea (2023) (0)
- Improving plant growth through increasing nitrogen-use efficiency (2012) (0)
- Structural basis of the molecular mechanisms underlying intracellular quality control of glycoproteins mediated by their glucosylation (2016) (0)
- Tbx2 is essential for cochlear inner hair cell development and regeneration (2022) (0)
- Expression profiling and gene localization of rice lesion mimic mutant spl1. (2005) (0)
- Air Pollution, Aerosol, and Climate Interactions in Asia VI Posters (2019) (0)
- Recent progresses in air pollution researches in China (2018) (0)
- Analytical and clinical performance of a rapid magnetic immunochromatographic assay for N-terminal pro-B-type natriuretic peptide detection (2022) (0)
- Visualisation of a flexible modular structure of the ER folding-sensor enzyme UGGT (2017) (0)
- Restoration of electrical diastole with bi-ventricular pacing. (2008) (0)
- Triglyceride profiles are associated with subacute exposure to bisphenol a in healthy young adults. (2022) (0)
- Nitrate reductase-dependent nitric oxide production is required for regulation alternative oxidase pathway involved in the resistance to Cucumber mosaic virus infection in Arabidopsis (2015) (0)
- Nationwide Epidemiological Study of Stroke Occurrence and Temperature in China: Association, Susceptibility and Risk Burden (2018) (0)
- Improving the Nutritional Value of Cereal Grains Using a Genomic Approach (2006) (0)
- Transcriptome Profiling of Wheat Genotypes Differing in Bread Baking Quality under Different Environments (2007) (0)
- Microarrays as a tool to identify untagged deletions in rice. (2007) (0)
- Determinating associations between multiple air pollutants and lipid peroxidation within elderlys in China (2016) (0)
- Monitoring acetylcholinesterase level changes under oxidative stress through ESIPT-ICT-based near-infrared fluorescent probe (2023) (0)
- Author response: Comprehensive transcriptome analysis of cochlear spiral ganglion neurons at multiple ages (2019) (0)
- Ligand-regulated three-photon AIE properties of manganese(II) complexes for photodynamic therapy. (2022) (0)
- Association Between Air Pollution and Biomarkers of Oxidative Stress in Children Before and During the Beijing Olympics (2016) (0)
- The Role of Photoreceptors in Response to Cucumber Mosaic Virus in Arabidopsis thaliana (2016) (0)
- A Profile of Exhaled Volatile Organic Compounds Measured Using PTR-TOF-MS for Diagnosis of Chronic Obstructive Pulmonary Disease (2018) (0)
- Cytological Studies on Plastid Inheritance in Alfalfa (Medicago sativa) (1992) (0)
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What Schools Are Affiliated With Tong Zhu?
Tong Zhu is affiliated with the following schools: