Torsten Schwede

Torsten Schwede's AcademicInfluence.com Rankings

Torsten Schwede

Biology

#9780

World Rank

#13025

Historical Rank

Bioinformatics

#111

World Rank

#113

Historical Rank

biology Degrees

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Biology

Torsten Schwede's Degrees

PhD Bioinformatics University of Basel

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Torsten Schwede's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling (2006) (7242)
SWISS-MODEL: homology modelling of protein structures and complexes (2018) (6475)
SWISS-MODEL: an automated protein homology-modeling server (2003) (5222)
SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information (2014) (4270)
The SWISS-MODEL Repository and associated resources (2008) (2012)
Toward the estimation of the absolute quality of individual protein structure models (2010) (1854)
Automated comparative protein structure modeling with SWISS‐MODEL and Swiss‐PdbViewer: A historical perspective (2009) (1691)
Protein structure homology modeling using SWISS-MODEL workspace (2008) (1193)
The SWISS-MODEL Repository—new features and functionality (2016) (1003)
QMEAN server for protein model quality estimation (2009) (739)
Modeling protein quaternary structure of homo- and hetero-oligomers beyond binary interactions by homology (2017) (521)
The SWISS-MODEL Repository: new features and functionalities (2005) (432)
Critical assessment of methods of protein structure prediction (CASP) — round x (2014) (410)
lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests (2013) (388)
QMEANDisCo—distance constraints applied on model quality estimation (2019) (364)
Critical assessment of methods of protein structure prediction (CASP)—Round XII (2018) (345)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models (2004) (340)
Critical assessment of methods of protein structure prediction (CASP)—Round XIII (2019) (319)
Second messenger-mediated spatiotemporal control of protein degradation regulates bacterial cell cycle progression. (2009) (297)
The Protein Model Portal—a comprehensive resource for protein structure and model information (2013) (275)
Critical assessment of methods of protein structure prediction: Progress and new directions in round XI (2016) (220)
Crystal structure of histidine ammonia-lyase revealing a novel polypeptide modification as the catalytic electrophile. (1999) (190)
Assessment of template based protein structure predictions in CASP9 (2011) (179)
Assessment of CASP7 predictions for template‐based modeling targets (2007) (175)
Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop. (2015) (163)
2017 publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution: an update (2017) (157)
QMEANclust: estimation of protein model quality by combining a composite scoring function with structural density information (2009) (151)
The Protein Model Portal (2008) (136)
Automated protein structure modeling with SWISS-MODEL Workspace and the Protein Model Portal. (2012) (135)
Critical assessment of methods of protein structure prediction (CASP)—Round XIV (2021) (131)
Protein structure computing in the genomic era. (2000) (131)
Outcome of a workshop on applications of protein models in biomedical research. (2009) (129)
Assessment of the assessment: Evaluation of the model quality estimates in CASP10 (2014) (128)
Modelling three-dimensional protein structures for applications in drug design. (2014) (120)
Assessment of disorder predictions in CASP7 (2007) (117)
Automated server predictions in CASP7 (2007) (115)
Automated protein structure homology modeling: a progress report. (2004) (114)
Protein modeling: what happened to the "protein structure gap"? (2013) (113)
Assessing the local structural quality of transmembrane protein models using statistical potentials (QMEANBrane) (2014) (110)
Continuous Automated Model EvaluatiOn (CAMEO) complementing the critical assessment of structure prediction in CASP12 (2018) (103)
The protein structure initiative structural genomics knowledgebase (2008) (97)
ProMod3 - A versatile homology modelling toolbox (2021) (93)
The plug domain of yeast Sec61p is important for efficient protein translocation, but is not essential for cell viability. (2006) (88)
QMEANDisCo—distance constraints applied on model quality estimation (2020) (86)
Assessment of ligand‐binding residue predictions in CASP9 (2011) (83)
OpenStructure: an integrated software framework for computational structural biology (2013) (77)
PDB-Dev: a Prototype System for Depositing Integrative/Hybrid Structural Models. (2017) (75)
Report of the wwPDB Small-Angle Scattering Task Force: data requirements for biomolecular modeling and the PDB. (2013) (75)
The mouse eugenol odorant receptor: structural and functional plasticity of a broadly tuned odorant binding pocket. (2011) (75)
Methods of model accuracy estimation can help selecting the best models from decoy sets: Assessment of model accuracy estimations in CASP11 (2016) (73)
Novel inhibitors of dengue virus methyltransferase: discovery by in vitro-driven virtual screening on a desktop computer grid. (2010) (73)
The Structural Biology Knowledgebase: a portal to protein structures, sequences, functions, and methods (2011) (71)
Mutations in the TMPRSS3 gene are a rare cause of childhood nonsyndromic deafness in Caucasian patients (2002) (71)
Mutations in the Sec61p Channel Affecting Signal Sequence Recognition and Membrane Protein Topology* (2007) (70)
GA4GH: International policies and standards for data sharing across genomic research and healthcare (2021) (62)
Assessment of model accuracy estimations in CASP12 (2018) (61)
Global and local model quality estimation at CASP8 using the scoring functions QMEAN and QMEANclust (2009) (59)
Outcome of a workshop on archiving structural models of biological macromolecules. (2006) (59)
Estimation of model accuracy in CASP13 (2019) (58)
Novel cargo-binding site in the β and δ subunits of coatomer (2007) (58)
CASP9 target classification (2011) (57)
Sulfonylureas and Glinides Exhibit Peroxisome Proliferator-Activated Receptor γ Activity: A Combined Virtual Screening and Biological Assay Approach (2007) (55)
Increased efficiency of Campylobacter jejuni N-oligosaccharyltransferase PglB by structure-guided engineering (2015) (55)
Asp1424Asn MYH9 mutation results in an unstable protein responsible for the phenotypes in May-Hegglin anomaly/Fechtner syndrome. (2003) (53)
Evaluation of the template‐based modeling in CASP12 (2018) (51)
Assessment of protein assembly prediction in CASP12 (2018) (48)
Automated protein modelling--the proteome in 3D. (2000) (48)
Challenging the state of the art in protein structure prediction: Highlights of experimental target structures for the 10th Critical Assessment of Techniques for Protein Structure Prediction Experiment CASP10 (2014) (48)
The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases (2015) (47)
Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework (2017) (46)
Drug Design Workshop: A Web-Based Educational Tool To Introduce Computer-Aided Drug Design to the General Public (2017) (44)
Computational structural biology : methods and applications (2008) (42)
OpenStructure: a flexible software framework for computational structural biology (2010) (37)
How inaccuracies in protein structure models affect estimates of protein–ligand interactions: Computational analysis of HIV‐I protease inhibitor binding (2006) (36)
Assessment of ligand binding site predictions in CASP10 (2014) (35)
Covalent and three-dimensional structure of the cyclodextrinase from Flavobacterium sp. no. 92. (2003) (35)
Cohesive Properties of the Caulobacter crescentus Holdfast Adhesin Are Regulated by a Novel c-di-GMP Effector Protein (2017) (32)
Domain definition and target classification for CASP7 (2007) (30)
Lessons Learned: Recommendations for Establishing Critical Periodic Scientific Benchmarking (2017) (29)
Homogenization and crystallization of histidine ammonia-lyase by exchange of a surface cysteine residue. (1999) (27)
Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures. (2019) (27)
A Comprehensive Mapping of the Druggable Cavities within the SARS-CoV-2 Therapeutically Relevant Proteins by Combining Pocket and Docking Searches as Implemented in Pockets 2.0 (2020) (26)
Zinc-selective inhibition of the promiscuous bacterial amide-hydrolase DapE: implications of metal heterogeneity for evolution and antibiotic drug design. (2014) (24)
Continuous Automated Model EvaluatiOn (CAMEO)—Perspectives on the future of fully automated evaluation of structure prediction methods (2021) (21)
Introducing “best single template” models as reference baseline for the Continuous Automated Model Evaluation (CAMEO) (2019) (20)
Target highlights in CASP9: Experimental target structures for the critical assessment of techniques for protein structure prediction (2011) (20)
Plasmid-mediated colistin resistance in a patient infected with Klebsiella pneumoniae. (2016) (15)
Dual Activities of Odorants on Olfactory and Nuclear Hormone Receptors* (2009) (14)
Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support (2014) (13)
The SwissBioGrid Project : objectives, preliminary results and lessons learned (2006) (13)
Computational analysis of methyl transfer reactions in dengue virus methyltransferase. (2014) (13)
SPHN - The BioMedIT Network: A Secure IT Platform for Research with Sensitive Human Data (2020) (13)
Global Genomic Analysis of SARS-CoV-2 RNA Dependent RNA Polymerase Evolution and Antiviral Drug Resistance (2021) (13)
Target highlights in CASP14: Analysis of models by structure providers (2021) (13)
Exome sequencing of healthy phenotypic extremes links TROVE2 to emotional memory and PTSD (2017) (12)
Some of the most interesting CASP11 targets through the eyes of their authors (2015) (12)
Data to knowledge: how to get meaning from your result (2015) (12)
Improving your target-template alignment with MODalign (2012) (11)
High-resolution cryo-EM structure of urease from the pathogen Yersinia enterocolitica (2020) (11)
Dual activities of odorants on olfactory and nuclear hormone receptors. (2009) (8)
Target highlights in CASP13: Experimental target structures through the eyes of their authors (2019) (8)
Docking for neglected diseases as community efforts (2008) (8)
Protein Tertiary Structure Modeling (2001) (7)
Modeling of Protein Tertiary and Quaternary Structures Based on Evolutionary Information. (2018) (7)
Target highlights from the first post‐PSI CASP experiment (CASP12, May–August 2016) (2018) (7)
A computational protocol to evaluate the effects of protein mutants in the kinase gatekeeper position on the binding of ATP substrate analogues (2017) (7)
Global surveillance of potential antiviral drug resistance in SARS-CoV-2: proof of concept focussing on the RNA-dependent RNA polymerase (2021) (4)
CryoEM Models and Associated Data Submitted to the 2015/2016 EMDataBank Model Challenge (2018) (4)
Novel missense mutations of TMPRSS3 in two consanguineous Tunisian families with non‐syndromic autosomal recessive deafness (2002) (3)
ECCB 2012: The 11th European Conference on Computational Biology (2012) (3)
The SwissBioGrid Project: Objectivse, Preliminary Results and Lessons Learned (2006) (3)
Protein Homology Modeling (2011) (3)
Coordination of structural bioinformatics activities across Europe (2018) (3)
Tandem Mass Spectrometry Protein Identification on a PC Grid (2007) (3)
Homology Modeling of Protein Structures (2013) (2)
3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources (2022) (2)
What is hidden in the darkness? Characterization of AlphaFold structural space (2022) (2)
ModelCIF: An extension of PDBx/mmCIF data representation for computed structure models (2022) (2)
SWISS-TANDEM: A Web-Based Workspace for MS/MS Protein Identification on PC Grids (2007) (2)
Author Correction: High-resolution cryo-EM structure of urease from the pathogen Yersinia enterocolitica (2020) (1)
Protein Structure Modeling in Functional Genomics (2002) (1)
Embedding-based alignment: combining protein language models and alignment approaches to detect structural similarities in the twilight-zone (2022) (1)
The D 1424 N MYH 9 mutation results in an unstable protein responsible for the phenotypes in May-Hegglin anomaly / Fechtner syndrome (2003) (1)
Structural Bioinformatics. By Philip E. Bourne and Helge Weissig (Eds.) (2006) (1)
A tribute to Anna Tramontano (1957–2017) (2018) (1)
SULFONYLUREAS AND GLINIDES AS NEW PPARγ AGONISTS: VIRTUAL SCREENING AND BIOLOGICAL ASSAYS (2007) (1)
Sulfonylureas and Glinides Exhibit PPARγ Activity: A Combined Virtual Screening and Biological Assay Approach* (2006) (1)
Interactomes in the era of deep learning. (2021) (1)
Modeling protein quaternary structure of homo- and hetero-oligomers beyond binary interactions by homology (2017) (1)
Histidine ammonia-lyase (HAL) from Pseudomonas putida (1999) (0)
FliD , the flagellar cap protein from Pseudomonas aeruginosa PAO 1 ( CASP : T 0886 , Ts 886 , PDB : 5 FHY ) : Provided by (2017) (0)
What is hidden in the darkness? Deep-learning assisted large-scale protein family curation uncovers novel protein families and folds (2023) (0)
Expanding our knowledge of the protein universe: Modelling of protein structures (2014) (0)
Structural Biology Knowledgebase: a biologists resource for protein structure and sample information (2012) (0)
INCATE: a partnership to boost the antibiotic pipeline (2022) (0)
Cover Image, Volume 87, Issue 12 (2019) (0)
OP-CBIO130487 2722..2728 (2013) (0)
How predicted protein models help to illuminate the full protein universe (2022) (0)
Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework (2017) (0)
Faculty Opinions recommendation of Comparative protein structure modeling by iterative alignment, model building and model assessment. (2003) (0)
The Structural Biology Knowledgebase - search Online for Protein Sequences, Structures, Functions, Methods and More (2011) (0)
The PSI structural genomics knowledgebase (2008) (0)
Workflows for continuous protein structure prediction benchmarking (2019) (0)
The Structural Biology Knowledgebase – structures, functions, methods and more (2011) (0)
Study of molecular processes through calculation   of multidimensional free energy landscapes   (2016) (0)
Supporting structure prediction method development with Continuous Automated Model EvaluatiOn (CAMEO) (2019) (0)
Computational structural biology (2015) (0)
Faculty Opinions recommendation of A tunable synthetic mammalian oscillator. (2009) (0)
Structural bioinformatics incorporated into ARP/wARP model building (2012) (0)
Drug design for high school students, high school teachers and the public at large (2015) (0)
HOW TO USE THE PSI STRUCTURAL GENOMICS KNOWLEDGEBASE TO ENABLE RESEARCH (2010) (0)
Crystal structure of urease from Yersinia enterocolitica (2016) (0)
Immunologically discernible cell surface variants for use in cell therapy (2017) (0)
Protein Homology Modelling - Providing Three-dimensional Models for Proteins where Experimental Data is Missing (2010) (0)
Cyclomaltodextrinase from Flavobacterium sp. No. 92: from DNA sequence to protein structure (2003) (0)
WES-ELIXIR: A Language-Agnostic Execution Service for Bioinformatics Workflows (2019) (0)
SG in the Spotlight (2010) (0)
Faculty Opinions recommendation of Three-dimensional structural view of the central metabolic network of Thermotoga maritima. (2009) (0)
Outer membrane β-barrel structure prediction through the lens of AlphaFold2 (2022) (0)
for the phenotypes in May-Hegglin anomaly / Fechtner syndrome mutation results in an unstable protein responsible MYH 9 Asp (2003) (0)
Comparative protein quaternary structure modeling using evolutionary interaction fingerprints (2014) (0)
Structural Biology Knowledgebase: An Integrated Resource for Modern Biologists (2014) (0)
A computational protocol to evaluate the effects of protein mutants in the kinase gatekeeper position on the binding of ATP substrate analogues (2017) (0)
ECCB 2012 Organization (2012) (0)
Engineered Single Amino Acid Substitutions Protect Hematopoietic Stem and Progenitor Cells from CD123 Targeted Immunotherapy (2022) (0)
Protein Structure Modeling and Docking at the Swiss Institute of Bioinformatics (2009) (0)
Imaging Science in Biochemistry (2002) (0)
Title : Assessment of model accuracy estimations in CASP 12 Short title : Model accuracy assessment (2017) (0)
Algorithms for the analysis of MALDI peptide mass fingerprint spectra for proteomics (2005) (0)
Faculty Opinions recommendation of Capturing expert knowledge with argumentation: a case study in bioinformatics. (2006) (0)
Tunable and Portable Extreme-Scale Drug Discovery Platform at Exascale: the LIGATE Approach (2023) (0)
Expanding Genome3D with models for human proteins from SWISS-MODEL (2019) (0)

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Other Resources About Torsten Schwede

www.biozentrum.unibas.ch

What Schools Are Affiliated With Torsten Schwede?

Torsten Schwede is affiliated with the following schools:

University of Basel
University of Bern
Biozentrum University of Basel
University of Zurich

Torsten Schwede's Academic­Influence.com Rankings