Türkan Haliloğlu
#111,846
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Turkish biochemist
Türkan Haliloğlu's AcademicInfluence.com Rankings
Türkan Haliloğlubiology Degrees
Biology
#14455
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#18210
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Molecular Biology
#2739
World Rank
#2781
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Biochemistry
#2763
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#2951
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Biology
Türkan Haliloğlu's Degrees
- Bachelors Chemistry Middle East Technical University
- Masters Biochemistry Istanbul Technical University
Why Is Türkan Haliloğlu Influential?
(Suggest an Edit or Addition)According to Wikipedia, Türkan Haliloğlu is a Turkish biochemist researching biopolymers, computational structural biology, protein dynamics, binding and folding of proteins, and protein interactions. She is a professor in the department of chemical engineering and director of the polymer research center at the Boğaziçi University.
Türkan Haliloğlu's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Gaussian Dynamics of Folded Proteins (1997) (661)
- HingeProt: Automated prediction of hinges in protein structures (2008) (214)
- Dynamic allostery: linkers are not merely flexible. (2011) (196)
- Community-wide assessment of protein-interface modeling suggests improvements to design methodology. (2011) (139)
- Structure‐based analysis of protein dynamics: Comparison of theoretical results for hen lysozyme with X‐ray diffraction and NMR relaxation data (1999) (96)
- Adaptability of protein structures to enable functional interactions and evolutionary implications. (2015) (95)
- Emergence and transmission of arbovirus evolutionary intermediates with epidemic potential. (2014) (93)
- Extreme entropy-enthalpy compensation in a drug-resistant variant of HIV-1 protease. (2012) (84)
- Efficient characterization of collective motions and interresidue correlations in proteins by low-resolution simulations. (1997) (79)
- Dynamics of preferential substrate recognition in HIV-1 protease: redefining the substrate envelope. (2011) (71)
- MCPath: Monte Carlo path generation approach to predict likely allosteric pathways and functional residues (2013) (64)
- How similar are protein folding and protein binding nuclei? Examination of vibrational motions of energy hot spots and conserved residues. (2005) (64)
- Cooperative fluctuations of unliganded and substrate‐bound HIV‐1 protease: A structure‐based analysis on a variety of conformations from crystallography and molecular dynamics simulations (2003) (53)
- Mechanisms of the Exchange of Diblock Copolymers between Micelles at Dynamic Equilibrium (1996) (53)
- Conformational transition pathways explored by Monte Carlo simulation integrated with collective modes. (2008) (51)
- Coarse‐grained simulations of conformational dynamics of proteins: Application to apomyoglobin (1998) (49)
- DNABINDPROT: fluctuation-based predictor of DNA-binding residues within a network of interacting residues (2010) (46)
- Structural and dynamics aspects of ASC speck assembly. (2014) (44)
- Cα-trace model of the transmembrane domain of human copper transporter 1, motion and functional implications (2010) (43)
- Interactions of hydrophobic peptides with lipid bilayers: Monte Carlo simulations with M2delta. (2003) (42)
- Molecular dynamics simulations on constraint metal binding peptides (2005) (40)
- Single-molecule probing of the conformational homogeneity of the ABC transporter BtuCD (2018) (38)
- Monte Carlo Studies of Folding, Dynamics, and Stability in α-Helices (2005) (38)
- Prediction of binding sites in receptor-ligand complexes with the Gaussian Network Model. (2008) (38)
- Analysis of correlations between energy and residue fluctuations in native proteins and determination of specific sites for binding. (2009) (36)
- Conformational Control of the Binding of the Transactivation Domain of the MLL Protein and c-Myb to the KIX Domain of CREB (2012) (35)
- A Model-Structure of a Periplasm-facing State of the NhaA Antiporter Suggests the Molecular Underpinnings of pH-induced Conformational Changes* (2012) (34)
- Mapping of rotational isomeric state chains with asymmetric torsional potential energy functions on a high coordination lattice: Application to polypropylene (1998) (33)
- How does KCNE1 regulate the Kv7.1 potassium channel? Model-structure, mutations, and dynamics of the Kv7.1-KCNE1 complex. (2012) (31)
- Interactions of cationic-hydrophobic peptides with lipid bilayers: a Monte Carlo simulation method. (2007) (30)
- Cataloging and organizing p73 interactions in cell cycle arrest and apoptosis (2008) (30)
- MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data (2010) (29)
- Monte Carlo simulations of peptide–membrane interactions with the MCPep web server† (2012) (29)
- Predicting Important Residues and Interaction Pathways in Proteins Using Gaussian Network Model: Binding and Stability of HLA Proteins (2010) (28)
- Hot Spots in a Network of Functional Sites (2013) (28)
- A Mechanistic View of the Role of E3 in Sumoylation (2010) (25)
- Machine learning integration for predicting the effect of single amino acid substitutions on protein stability (2009) (25)
- Association of putative concave protein‐binding sites with the fluctuation behavior of residues (2006) (24)
- Cooperative Transition between Open and Closed Conformations in Potassium Channels (2008) (22)
- HIV-1 Protease and Substrate Coevolution Validates the Substrate Envelope As the Substrate Recognition Pattern. (2012) (21)
- Monte Carlo lattice simulation of the interchange of chains between micelles of diblock copolymers (1994) (20)
- Features of large hinge-bending conformational transitions. Prediction of closed structure from open state. (2014) (19)
- Structure-based prediction of potential binding and nonbinding peptides to HIV-1 protease. (2003) (19)
- Segmental orientation in uniaxially deformed networks : a higher order approximation for finite chains and large deformations (1991) (17)
- Detection of the onset of demixing in simulations of polypropylene melts in which the chains differ only in stereochemical composition (1999) (17)
- Allosteric Dynamic Control of Binding. (2015) (17)
- Interactions of the M2delta segment of the acetylcholine receptor with lipid bilayers: a continuum-solvent model study. (2003) (16)
- Use of residual dipolar couplings as restraints in ab initio protein structure prediction (2003) (16)
- NhaA antiporter functions using 10 helices, and an additional 2 contribute to assembly/stability (2015) (16)
- Monte Carlo simulation of the adsorption from a nonselective solvent of symmetric triblock copolymers with sticky end blocks (1997) (15)
- Independent and cooperative motions of the Kv1.2 channel: voltage sensing and gating. (2010) (15)
- Unfolding events of Chymotrypsin Inhibitor 2 (CI2) revealed by Monte Carlo (MC) simulations and their consistency from structure-based analysis of conformations (2004) (14)
- Simulations of rotational isomeric state models for poly(propylene) melts on a high coordination lattice (1998) (14)
- The Transmembrane Helix Tilt May Be Determined by the Balance between Precession Entropy and Lipid Perturbation (2012) (13)
- Dynamic Fluctuations Provide the Basis of a Conformational Switch Mechanism in Apo Cyclic AMP Receptor Protein (2013) (12)
- Substrate specificity in HIV‐1 protease by a biased sequence search method (2006) (12)
- MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data (2010) (12)
- A dynamic rotational isomeric state approach for extension of the time scale of the local dynamics observed in fully atomistic molecular dynamics simulations: Application to polybutadiene (1996) (12)
- Cooperative fluctuations point to the dimerization interface of p53 core domain. (2006) (11)
- Coarse-grained simulations of the conformational dynamics of proteins (1999) (10)
- Oncogenic mutations on Rac1 affect global intrinsic dynamics underlying GTP and PAK1 binding. (2021) (10)
- Monte Carlo studies of folding, dynamics, and stability in alpha-helices. (2005) (10)
- Distinct Allosteric Networks Underlie Mechanistic Speciation of ABC Transporters. (2020) (10)
- Structure, Dynamics and Implied Gating Mechanism of a Human Cyclic Nucleotide-Gated Channel (2014) (9)
- Rationale for more diverse inhibitors in competition with substrates in HIV-1 protease. (2010) (9)
- Orientational and conformational correlations in deformed polymer chains with fixed end-to-end separation: A Brownian dynamics simulation study (1992) (8)
- Cullin neddylation may allosterically tune polyubiquitin chain length and topology. (2017) (8)
- Mobility of Free Ends and Junction Points as a Lamellar Block Copolymer (1994) (8)
- Protein dynamics analysis reveals that missense mutations in cancer‐related genes appear frequently on hinge‐neighboring residues (2019) (8)
- DynaFace: Discrimination between Obligatory and Non-obligatory Protein-Protein Interactions Based on the Complex’s Dynamics (2015) (8)
- Changes to the dynamic nature of hemagglutinin and the emergence of the 2009 pandemic H1N1 influenza virus (2015) (8)
- Alternative allosteric mechanisms can regulate the substrate and E2 in SUMO conjugation. (2011) (8)
- Response of a single grafted polyethylene chain to simple shear flow: A Brownian dynamics simulation study (1996) (7)
- Analysis of orientation autocorrelation and cross-correlation functions for polyethylene in the inclusion complex with perhydrotriphenylene (1993) (7)
- How Does KCNE 1 Regulate the Kv 7 . 1 Potassium Channel ? Model-Structure , Mutations , and Dynamics of the Kv 7 . 1-KCNE 1 Complex (2012) (7)
- Correspondence between Function and Interaction in Protein Interaction Network of Saccaromyces cerevisiae (2007) (7)
- Relative contributions of coupled rotations and small-amplitude torsions to conformational relaxation in polymers (1996) (6)
- Conformational transitions of end-adsorbed triblock copolymers in a nonselective solvent (1997) (6)
- Conformational Dynamics of Subtilisin-Chymotrypsin Inhibitor 2 Complex by Coarse-Grained Simulations (2001) (6)
- Drug-resistant HIV-1 protease regains functional dynamics through cleavage site coevolution (2015) (6)
- Coupling of structural fluctuations to deamidation reaction in triosephosphate isomerase by Gaussian network model (2005) (5)
- Structural insight into host plasma membrane association and assembly of HIV-1 matrix protein (2021) (5)
- Local and Global Motions Underlying Antibiotic Binding in Bacterial Ribosome (2020) (5)
- Monte Carlo Simulation of Self-Assembly in Macro-Molecular Systems (1996) (3)
- Effect of Vinyl Content on Self-Diffusion in Polybutadiene Melts (2000) (3)
- Subsets of Slow Dynamic Modes Reveal Global Information Sources as Allosteric Sites. (2022) (3)
- Role of Structural Heterogeneities on Segmental Orientation in Deformed Chains: Application to Alternating Copolymers (1994) (3)
- Global Dynamics Renders Protein Sites with High Functional Response. (2021) (3)
- Protein dynamics analysis identifies candidate cancer driver genes and mutations in TCGA data (2021) (3)
- Characterization of internal motions of Escherichia coli ribonuclease H by Monte Carlo simulation. (1999) (2)
- MIMTool: A Tool for Drawing Molecular Interaction Maps (2014) (2)
- Prediction of allosteric communication pathways in proteins (2022) (2)
- Correlated fluctuations in polymer networks (1998) (2)
- Time‐dependent probability distribution functions for orientational motions of segments in polymer chains (1992) (2)
- What can we learn from highly connected beta-rich structures for structural interface design? (2008) (2)
- Folding pathways explored with artificial potential functions (2009) (1)
- SIMULATION OF ROTATIONAL ISOMERIC STATE MODELS FOR POLYPROPYLENE MELTS ON A HIGH COORDINATION LATTICE (1999) (1)
- Distribution of cooperative interactions in barnase at different time windows by coarse-grained simulations (2002) (1)
- Orientational mobility in uniaxially deformed polymer chains: a Brownian dynamics simulation study (1993) (1)
- Dependence of segmental orientation on polymer conformational characteristics (1995) (1)
- Monte-Carlo Simulations of Peptide-Membrane Interactions: Web-Server (2010) (1)
- The molecular dynamics of poly(1, 4-Trans-butadiene) in the amorphous state and in an inclusion complex (1996) (1)
- Comparing protein structures with RINspector automation in (2020) (0)
- Reconstruction of Wnt/Calcium signaling pathway in C. elegans (2009) (0)
- Dynamic Order in Allosteric Interactions (2020) (0)
- Allosteric Regulation of Rac1-PAK1 Binding Affinity by Mutant Residues through Molecular Simulations and AFM (2016) (0)
- Three approaches that may permit more efficient simulation of the dynamics of atomistic models of polymers (1997) (0)
- Using Molecular Dynamics to Investigate Substrate Recognition and Co-evolution in HIV-1 Protease (2009) (0)
- Human Copper Transporter 1: Model-Structure, Function and Motion (2010) (0)
- Observation of the Correlations between Pair Wise Interaction and Functional Organization of the Proteins, in the Protein Interaction Network of Saccaromyces Cerevisiae (2008) (0)
- Monte Carlo simulations of peptide – membrane interactions with the MCPep web server y (2012) (0)
- Targeted Conformational Transitions of Multimeric Proteins by Monte Carlo Simulations Combined with Collective Anisotropic Network Model Modes (2015) (0)
- Kv71 KCNE1 refined (2012) (0)
- A Comprehensive Protein Interaction Network of Calcium Triggered Mechanisms in S. cerevisiae (2012) (0)
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