Umit Catalyurek
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Computer Science
Umit Catalyurek's Degrees
- PhD Computer Science University of California, Santa Barbara
- Masters Computer Science University of California, Santa Barbara
- Bachelors Computer Engineering Middle East Technical University
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(Suggest an Edit or Addition)Umit Catalyurek's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Hypergraph-Partitioning-Based Decomposition for Parallel Sparse-Matrix Vector Multiplication (1999) (586)
- Parallel hypergraph partitioning for scientific computing (2006) (273)
- A Scalable Distributed Parallel Breadth-First Search Algorithm on BlueGene/L (2005) (265)
- A comparative analysis of biclustering algorithms for gene expression data (2013) (233)
- Benchmarking short sequence mapping tools (2011) (217)
- Computer-aided prognosis of neuroblastoma on whole-slide images: Classification of stromal development (2009) (213)
- Histopathological Image Analysis Using Model-Based Intermediate Representations and Color Texture: Follicular Lymphoma Grading (2009) (203)
- Distributed processing of very large datasets with DataCutter (2001) (199)
- Hierarchical Data Format (2011) (197)
- Performance Evaluation of Sparse Matrix Multiplication Kernels on Intel Xeon Phi (2013) (164)
- Hypergraph-based Dynamic Load Balancing for Adaptive Scientific Computations (2007) (157)
- Streaming Algorithms for k-core Decomposition (2013) (154)
- Permuting Sparse Rectangular Matrices into Block-Diagonal Form (2004) (153)
- The Zoltan and Isorropia parallel toolkits for combinatorial scientific computing: Partitioning, ordering and coloring (2012) (135)
- PaToH (Partitioning Tool for Hypergraphs) (2011) (132)
- Dynamic generation of accident progression event trees (2008) (121)
- On Two-Dimensional Sparse Matrix Partitioning: Models, Methods, and a Recipe (2010) (120)
- Tracing Origins of the Salmonella Bareilly Strain Causing a Food-borne Outbreak in the United States. (2016) (117)
- Decomposing Irregularly Sparse Matrices for Parallel Matrix-Vector Multiplication (1996) (115)
- Finding the Hierarchy of Dense Subgraphs using Nucleus Decompositions (2014) (112)
- A fine-grain hypergraph model for 2D decomposition of sparse matrices (2001) (112)
- Biomedical image analysis on a cooperative cluster of GPUs and multicores (2008) (111)
- Metagenomic Insights into the Carbohydrate-Active Enzymes Carried by the Microorganisms Adhering to Solid Digesta in the Rumen of Cows (2013) (106)
- A repartitioning hypergraph model for dynamic load balancing (2009) (106)
- A Hypergraph-Partitioning Approach for Coarse-Grain Decomposition (2001) (96)
- Collective modes in light nuclei from first principles. (2013) (91)
- Coordinating the use of GPU and CPU for improving performance of compute intensive applications (2009) (83)
- Image processing for the grid: a toolkit for building grid-enabled image processing applications (2003) (80)
- Graph coloring algorithms for multi-core and massively multithreaded architectures (2012) (78)
- Integrated data placement and task assignment for scientific workflows in clouds (2011) (77)
- Processing large-scale multi-dimensional data in parallel and distributed environments (2002) (73)
- A task duplication based bottom-up scheduling algorithm for heterogeneous environments (2006) (71)
- Betweenness centrality on GPUs and heterogeneous architectures (2013) (71)
- The virtual microscope. (2003) (70)
- An Early Evaluation of the Scalability of Graph Algorithms on the Intel MIC Architecture (2012) (67)
- Compaction of Schedules and a Two-Stage Approach for Duplication-Based DAG Scheduling (2009) (66)
- Exploiting Geometric Partitioning in Task Mapping for Parallel Computers (2014) (64)
- Texture classification using nonlinear color quantization: Application to histopathological image analysis (2008) (63)
- Development of a code-agnostic computational infrastructure for the dynamic generation of accident progression event trees (2010) (61)
- Improving Functional Modularity in Protein-Protein Interactions Graphs Using Hub-Induced Subgraphs (2006) (61)
- A framework for scalable greedy coloring on distributed-memory parallel computers (2008) (60)
- Incremental k-core decomposition: algorithms and evaluation (2016) (60)
- Executing Multiple Pipelined Data Analysis Operations in the Grid (2002) (58)
- Comparative analysis of biclustering algorithms (2010) (57)
- mrSNP: Software to detect SNP effects on microRNA binding (2014) (56)
- Hypergraph partitioning for multiple communication cost metrics: Model and methods (2015) (54)
- An Integrated Approach to Locality-Conscious Processor Allocation and Scheduling of Mixed-Parallel Applications (2009) (52)
- A Biclustering Method to Discover Co-regulated Genes Using Diverse Gene Expression Datasets (2009) (51)
- A Scalable Parallel Graph Coloring Algorithm for Distributed Memory Computers (2005) (50)
- Database Support for Data-Driven Scientific Applications in the Grid (2003) (50)
- Incremental algorithms for closeness centrality (2013) (50)
- Using overlays for efficient data transfer over shared wide-area networks (2008) (48)
- Computerized microscopic image analysis of follicular lymphoma (2008) (48)
- Diversifying Citation Recommendations (2012) (48)
- Investigating the use of GPU-accelerated nodes for SAR image formation (2009) (47)
- Visualization of Large Data Sets with the Active Data Repository (2001) (46)
- Efficient sparse-matrix multi-vector product on GPUs (2018) (45)
- A survey of pipelined workflow scheduling: Models and algorithms (2013) (44)
- An approach for automatic data virtualization (2004) (44)
- Regularizing graph centrality computations (2015) (44)
- Hypergraph models for sparse matrix partitioning and reordering (1999) (43)
- Applying database support for large scale data driven science in distributed environments (2003) (43)
- A hypergraph partitioning based approach for scheduling of tasks with batch-shared I/O (2005) (42)
- TheAdvisor: a webservice for academic recommendation (2013) (42)
- Application of Grid-enabled technologies for solving optimization problems in data-driven reservoir studies (2004) (42)
- Shattering and Compressing Networks for Betweenness Centrality (2013) (41)
- Diversified recommendation on graphs: pitfalls, measures, and algorithms (2013) (41)
- Run-time optimizations for replicated dataflows on heterogeneous environments (2010) (38)
- Getting Started with Zoltan: A Short Tutorial (2009) (38)
- A Hypergraph-Based Workload Partitioning Strategy for Parallel Data Aggregation (2001) (37)
- Recommendation on Academic Networks using Direction Aware Citation Analysis (2012) (37)
- A Parallel Distance-2 Graph Coloring Algorithm for Distributed Memory Computers (2005) (37)
- Proceedings of the 1st ACM International Health Informatics Symposium (2010) (36)
- UMPa: A multi-objective, multi-level partitioner for communication minimization (2012) (36)
- KELVIN: A Software Package for Rigorous Measurement of Statistical Evidence in Human Genetics (2011) (36)
- Particle Dynamics (2011) (35)
- Pathological Image Analysis Using the GPU: Stroma Classification for Neuroblastoma (2007) (34)
- Distributed dynamic event tree generation for reliability and risk assessment (2006) (33)
- NUSAP1 influences the DNA damage response by controlling BRCA1 protein levels (2014) (33)
- Multi-Jagged: A Scalable Parallel Spatial Partitioning Algorithm (2016) (31)
- Toward Optimizing Latency Under Throughput Constraints for Application Workflows on Clusters (2007) (31)
- Fast and High Quality Topology-Aware Task Mapping (2015) (31)
- Decomposing Linear Programs for Parallel Solution (1995) (31)
- An Integrated Approach for Processor Allocation and Scheduling of Mixed-Parallel Applications (2006) (30)
- Distributed-Memory Parallel Algorithms for Matching and Coloring (2011) (30)
- Load-balancing spatially located computations using rectangular partitions (2011) (30)
- A dynamic scheduling approach for coordinated wide-area data transfers using GridFTP (2008) (29)
- A task duplication based scheduling algorithm using partial schedules (2005) (29)
- A distributed data management middleware for data-driven application systems (2004) (28)
- A resource provisioning framework for bioinformatics applications in multi-cloud environments (2018) (28)
- Performance optimization for data intensive grid applications (2001) (28)
- Graph Manipulations for Fast Centrality Computation (2017) (28)
- Spaler: Spark and GraphX based de novo genome assembler (2015) (27)
- Nucleus Decompositions for Identifying Hierarchy of Dense Subgraphs (2017) (27)
- Computerized Pathological Image Analysis For Neuroblastoma Prognosis (2007) (27)
- Fast Triangle Counting Using Cilk (2018) (27)
- A simulation and data analysis system for large‐scale, data‐driven oil reservoir simulation studies (2005) (27)
- Efficacy of the SU(3) scheme for ab initio large-scale calculations beyond the lightest nuclei (2016) (26)
- Optimizing dataflow applications on heterogeneous environments (2012) (26)
- Hypergraph Partitioning-Based Fill-Reducing Ordering for Symmetric Matrices (2011) (26)
- Distributed-Memory Parallel Algorithms for Distance-2 Coloring and Related Problems in Derivative Computation (2010) (25)
- Hypergraph Partitioning for Automatic Memory Hierarchy Management (2006) (25)
- Computer-aided prognosis of neuroblastoma: classification of stromal development on whole-slide images (2008) (25)
- Direction Awareness in Citation Recommendation (2012) (25)
- Exploration and Visualization of Very Large Datasets with the Active Data Repository (2001) (25)
- Particle Methods (2011) (25)
- Multithreaded Clustering for Multi-level Hypergraph Partitioning (2012) (25)
- StrainHub: A phylogenetic tool to construct pathogen transmission networks (2019) (25)
- Exploring the future of out-of-core computing with compute-local non-volatile memory (2013) (25)
- Fast Recommendation on Bibliographic Networks (2012) (24)
- The Supramap project: linking pathogen genomes with geography to fight emergent infectious diseases (2011) (24)
- Efficient processing of pathological images using the grid: computer-aided prognosis of neuroblastoma (2007) (24)
- A Duplication Based Algorithm for Optimizing Latency Under Throughput Constraints for Streaming Workflows (2008) (23)
- Impact of high performance sockets on data intensive applications (2003) (23)
- Incremental Algorithms for Network Management and Analysis based on Closeness Centrality (2013) (23)
- Driving Scientific Applications by Data in Distributed Environments (2003) (23)
- Efficient and effective sparse tensor reordering (2019) (22)
- Towards a personalized, scalable, and exploratory academic recommendation service (2013) (21)
- Large-Scale Biomedical Image Analysis in Grid Environments (2008) (21)
- Acyclic Partitioning of Large Directed Acyclic Graphs (2017) (21)
- Improving performance of adaptive component-based dataflow middleware (2012) (20)
- Large-scale ab initio configuration interaction calculations for light nuclei (2012) (20)
- Parallel short sequence mapping for high throughput genome sequencing (2009) (20)
- Stroma classification for neuroblastoma on graphics processors (2009) (19)
- Optimizing latency and throughput of application workflows on clusters (2011) (19)
- Improving performance of multiple sequence alignment analysis in multi-client environments (2002) (19)
- Models, methods and middleware for grid-enabled multiphysics oil reservoir management (2006) (18)
- Large Image Correction and Warping in a Cluster Environment (2006) (18)
- Parallel Ocean Program (POP) (2011) (18)
- An Image Analysis Approach for Detecting Malignant Cells in Digitized H&E-stained Histology Images of Follicular Lymphoma (2010) (18)
- Partitioning Hypergraphs in Scientific Computing Applications through Vertex Separators on Graphs (2012) (18)
- Servicing range queries on multidimensional datasets with partial replicas (2005) (17)
- Zoltan2: Next-Generation Combinatorial Toolkit. (2012) (17)
- Towards Dynamic Data-Driven Optimization of Oil Well Placement (2005) (17)
- A Matrix Partitioning Interface to PaToH in MATLAB (2010) (17)
- A Scalable Clustering-Based Task Scheduler for Homogeneous Processors Using DAG Partitioning (2019) (16)
- XML database support for distributed execution of data-intensive scientific workflows (2005) (16)
- e-Science, caGrid, and Translational Biomedical Research (2008) (16)
- A component-based implementation of multiple sequence alignment (2003) (16)
- Multilevel Algorithms for Acyclic Partitioning of Directed Acyclic Graphs (2019) (16)
- GPU Accelerated Maximum Cardinality Matching Algorithms for Bipartite Graphs (2013) (15)
- Automatic dataflow application tuning for heterogeneous systems (2010) (15)
- Linear Algebra-Based Triangle Counting via Fine-Grained Tasking on Heterogeneous Environments : (Update on Static Graph Challenge) (2019) (15)
- An approach for optimizing latency under throughput constraints for application workflows on clus (2007) (15)
- Two-dimensional approaches to sparse matrix partitioning (2012) (15)
- Application of Information Technology: A Grid-Based Image Archival and Analysis System (2005) (15)
- A Component-based Implementation of Iso-surface Rendering for Visualizing Large Datasets (2001) (14)
- An Out-of-Core Eigensolver on SSD-equipped Clusters (2012) (14)
- Scalable Hybrid Implementation of Graph Coloring Using MPI and OpenMP (2012) (14)
- Task Scheduling and File Replication for Data-Intensive Jobs with Batch-shared I/O (2006) (14)
- Hypergraph Sparsification and Its Application to Partitioning (2013) (14)
- A Moldable Online Scheduling Algorithm and Its Application to Parallel Short Sequence Mapping (2010) (14)
- Advances in parallel partitioning, load balancing and matrix ordering for scientific computing (2009) (13)
- Wide-area overlay networking to manage science DMZ accelerated flows (2014) (13)
- Locality Conscious Processor Allocation and Scheduling for Mixed Parallel Applications (2006) (13)
- Strategies for using additional resources in parallel hash-based join algorithms (2004) (13)
- Analysis of Partitioning Models and Metrics in Parallel Sparse Matrix-Vector Multiplication (2013) (12)
- Grid-based management of biomedical data using an XML-based distributed data management system (2005) (12)
- A Combined Computerized Classification System for Whole-slide Neuroblastoma Histology: Model-based Structural Features (2009) (12)
- Scheduling File Transfers for Data-Intensive Jobs on Heterogeneous Clusters (2007) (12)
- Fast recommendation on bibliographic networks with sparse-matrix ordering and partitioning (2013) (12)
- The transcriptome of the rumen ciliate Entodinium caudatum reveals some of its metabolic features (2019) (12)
- Incremental closeness centrality in distributed memory (2015) (12)
- An Out-of-Core Dataflow Middleware to Reduce the Cost of Large Scale Iterative Solvers (2012) (12)
- STREAMER: A distributed framework for incremental closeness centrality computation (2013) (12)
- An XML-based System for Synthesis of Data from Disparate Databases (2006) (11)
- High-performance signal processing on emerging many-core architectures using cuda (2009) (11)
- No Core CI calculations for light nuclei with chiral 2- and 3-body forces (2013) (11)
- Improving graph coloring on distributed-memory parallel computers (2011) (10)
- A Data Locality Aware Online Scheduling Approach for I/O-Intensive Jobs with File Sharing (2006) (10)
- Optimizing the stretch of independent tasks on a cluster: From sequential tasks to moldable tasks (2012) (10)
- Scalable Triangle Counting on Distributed-Memory Systems (2019) (10)
- Efficient manipulation of large datasets on heterogeneous storage systems (2002) (10)
- SONIC: streaming overlapping community detection (2016) (10)
- BlueGene/L applications: Parallelism On a Massive Scale (2008) (10)
- Merging network patterns: a general framework to summarize biomedical network data (2012) (10)
- An Efficient and Reliable Scientific Workflow System (2007) (10)
- Result Diversification in Automatic Citation Recommendation (2013) (10)
- Hardware/Software Vectorization for Closeness Centrality on Multi-/Many-Core Architectures (2014) (10)
- Optimizing Reduction Computations In a Distributed Environment (2003) (10)
- Finding Hierarchical and Overlapping Dense Subgraphs using Nucleus Decompositions (2014) (9)
- Partitioning Spatially Located Computations Using Rectangles (2011) (9)
- A component-based framework for the Cell Broadband Engine (2009) (9)
- Programming Strategies for Irregular Algorithms on the Emu Chick (2018) (9)
- Multi-hop path splitting and multi-pathing optimizations for data transfers over shared wide-area networks using gridFTP (2008) (9)
- Shattering and Compressing Networks for Centrality Analysis (2012) (8)
- An extensible global address space framework with decoupled task and data abstractions (2006) (8)
- Extracting Maximal Exact Matches on GPU (2014) (8)
- A Knowledge-Anchored Integrative Image Search and Retrieval System (2009) (8)
- Shared-Memory Scalable k-Core Maintenance on Dynamic Graphs and Hypergraphs (2021) (8)
- Distributed Out-of-Core Preprocessing of Very Large Microscopy Images for Efficient Querying (2005) (7)
- Development and application of the dynamic system doctor to nuclear reactor probabilistic risk assessments. (2008) (7)
- Phylogenetic visualization of the spread of H7 influenza A viruses (2015) (7)
- A Block-Based Triangle Counting Algorithm on Heterogeneous Environments (2020) (7)
- Scheduling of tasks with batch-shared I/O on heterogeneous systems (2006) (7)
- A Push-Relabel-Based Maximum Cardinality Bipartite Matching Algorithm on GPUs (2013) (6)
- MSSG: A Framework for Massive-Scale Semantic Graphs (2006) (6)
- A partitioning-based divisive clustering technique for maximizing the modularity (2012) (6)
- A Unifying Framework to Identify Dense Subgraphs on Streams: Graph Nuclei to Hypergraph Cores (2021) (6)
- A Divisive clustering technique for maximizing the modularity (2012) (6)
- Parallel materialization of large ABoxes (2009) (6)
- Development of Computer Based System To Aid Pathologists in Histological Grading of Follicular Lymphomas. (2007) (6)
- Hypergraph-Partitioning-Based Sparse Matrix Ordering (2005) (6)
- Serving queries to multi-resolution datasets on disk-based storage clusters (2004) (6)
- On Symmetric Rectilinear Matrix Partitioning (2020) (5)
- Exploring parallelism in short sequence mapping using Burrows-Wheeler Transform (2010) (5)
- An approach to locality-conscious load balancing and transparent memory hierarchy management with a global-address-space parallel programming model (2006) (5)
- Constrained Fine-Grain Parallel Sparse Matrix Distribution (2006) (5)
- Allele‐specific imbalance mapping at human orthologs of mouse susceptibility to colon cancer (Scc) loci (2015) (5)
- Persistent Caching in a Multiple Query Optimization Framework (2002) (5)
- Performance vs. accuracy trade-offs for large-scale image analysis applications (2007) (5)
- Supporting SQL-3 Aggregations on Grid-Based Data Repositories (2004) (5)
- Masher: Mapping Long(er) Reads with Hash-based Genome Indexing on GPUs (2013) (5)
- Servicing Seismic and Oil Reservoir Simulation Data Through Grid Data Services (2005) (5)
- Intelligent Optimization of Parallel and Distributed Applications (2007) (5)
- Supporting Large Scale Medical and Scientific Datasets (2005) (4)
- An Out-of-Core Task-based Middleware for Data-Intensive Scientific Computing (2015) (4)
- Permuting Sparse Rectangular Matrices into Singly-Bordered Block-Diagonal Form for Parallel Solution of LP Problems (2002) (4)
- Translational research design templates, Grid computing, and HPC (2008) (4)
- Syndromic Surveillance of Infectious Diseases meets Molecular Epidemiology in a Workflow and Phylogeographic Application (2015) (4)
- Hypergraph Partitioning through Vertex Separators on Graphs (2011) (4)
- An Iterative Global Structure-Assisted Labeled Network Aligner (2018) (4)
- Dynamic Load Balancing for Adaptive Scientific Computations via Hypergraph Partitioning. (2006) (4)
- Optimizing multiple queries on scientific datasets with partial replicas (2007) (4)
- Parallel hypergraph partitioning for irregular problems. (2006) (4)
- Geometric Mapping of Tasks to Processors on Parallel Computers with Mesh or Torus Networks (2019) (4)
- Incremental k-core decomposition: algorithms and evaluation (2016) (4)
- Hypergraph‐Based Dynamic Partitioning and Load Balancing (2009) (4)
- Parallel I/O Library (PIO) (2011) (4)
- A Novel Multiple Choice Question Generation Strategy: Alternative Uses for Controlled Vocabulary Thesauri in Biomedical-Sciences Education (2015) (4)
- On the Scalability of Hypergraph Models for Sparse Matrix Partitioning (2010) (4)
- Multi-jagged: A Scalable Multi-section based Spatial Partitioning Algorithm. (2013) (4)
- On Shared-Memory Parallelization of a Sparse Matrix Scaling Algorithm (2012) (4)
- Author's retrospective for biomedical image analysis on a cooperative cluster of gpus and multicores (2014) (4)
- A simulation and data analysis system for large-scale, data-driven oil reservoir simulation studies: Research Articles (2005) (3)
- Geometric Partitioning and Ordering Strategies for Task Mapping on Parallel Computers (2018) (3)
- Using Space and Attribute Partitioned Partial Replicas for Data Subsetting and Aggregation Queries (2006) (3)
- Microarray vs. RNA-Seq: a comparison for active subnetwork discovery (2012) (3)
- Enabling High Performance Computational Science through Combinatorial Algorithms (2007) (3)
- Massively multithreaded maxflow for image segmentation on the Cray XMT‐2 (2014) (3)
- Linking of the RELAP5-3D Thermal-Hydraulic Code with the ADAPT PRA Tool (2009) (3)
- Supporting Scalable and Distributed Data Subsetting and Aggregation in Large-Scale Seismic Data Analysis (2006) (3)
- Use of PVFS for efficient execution of jobs with pipeline-shared I/O (2004) (3)
- PIGO: A Parallel Graph Input/Output Library (2021) (3)
- Dynamic Load Balancing for Adaptive Scientific Computations via Hypergraph Repartitioning (2006) (3)
- Distributed-memory parallel algorithms for distance-2 coloring and their application to derivative computation. (2008) (3)
- Petascale kinetic simulation of the magnetosphere (2011) (3)
- Supporting large scale data driven science in distributed environments (2005) (3)
- EIGA: Elastic and Scalable Dynamic Graph Analysis (2021) (3)
- Methodology Development for Passive Component Reliability Modeling in a Multi-Physics Simulation Environment (2015) (3)
- Exploring the GPU for Enhancing Parallelism on Color and Texture Analysis (2009) (2)
- DeepSparse: A Task-Parallel Framework for SparseSolvers on Deep Memory Architectures (2019) (2)
- A constructive multi-way circuit partitioning algorithm based on minimum degree ordering (1994) (2)
- High‐Performance Computing In High‐Throughput Sequencing (2013) (2)
- Graph coloring and clustering algorithms for science and engineering applications (2009) (2)
- Active Betweenness Cardinality: Algorithms and Applications (2017) (2)
- Acceleration of Two Point Correlation Function Calculation for Pathology Image Segmentation (2011) (2)
- On Reducing I/O Overheads in Large-Scale Invariant Subspace Projections (2011) (2)
- Dynamic Data-Driven Systems Approach for Simulation Based Optimizations (2007) (2)
- Flexible patient information search and retrieval framework: pilot implementation (2007) (2)
- A scalable graph generation algorithm to sample over a given shell distribution (2020) (2)
- Improving Locality-Aware Scheduling with Acyclic Directed Graph Partitioning (2019) (2)
- Tools for efficient subsetting and pipelined processing of large scale, distributed biomedical image data (2004) (2)
- Parallel Random Access Machines (PRAM) (2011) (2)
- MG-GCN: A Scalable multi-GPU GCN Training Framework (2021) (2)
- Mitigating bias in planning two-colour microarray experiments (2015) (2)
- Heuristics for Symmetric Rectilinear Matrix Partitioning (2019) (2)
- On Distributed Graph Coloring with Iterative Recoloring (2014) (2)
- OSUBMI-TR-2009-n 02 / BU-CE-0904 Hypergraph Partitioning-Based Fill-Reducing Ordering (2009) (2)
- Identification of a Breast Cancer Associated Regulatory Network (2009) (1)
- Method and tool development to support systematic quantification of uncertainties, invited (2011) (1)
- The Zoltan2 Toolkit: Partitioning Task Placement Coloring and Ordering. (2015) (1)
- Tutorial: The Zoltan Toolkit. (2008) (1)
- A softwaretool for the creation and analysis of dynamic event trees (2006) (1)
- mrSNP: Software to detect SNP effects on microRNA binding (2014) (1)
- Service-Based Access to and Processing of Large Scientific Datasets (2006) (1)
- A global address space framework for locality aware scheduling of block-sparse computations (2007) (1)
- Grid Support for Collaborative Clinical and Biomedical Research Studies (2002) (1)
- Combinatorial algorithms for computational science and engineering (2008) (1)
- Parallel Partitioning, Coloring and Ordering in Scientific Computing (2012) (1)
- SiNA: A Scalable Iterative Network Aligner (2018) (1)
- A Comprehensive Analysis Workflow for Genome-Wide Screening Data from ChIP-Sequencing Experiments (2009) (1)
- Program Graphs (2011) (1)
- Partitioning sparse matrices (2009) (1)
- Color and texture analysis using emerging parallel architectures (2011) (1)
- Local Detection of Critical Nodes in Active Graphs (2018) (1)
- Is Acyclic Directed Graph Partitioning Effective for Locality-Aware Scheduling? (2019) (1)
- Parallel Event-Driven Global Magnetospheric Hybrid Simulations (2010) (1)
- Efficient Hierarchical State Vector Simulation of Quantum Circuits via Acyclic Graph Partitioning (2022) (1)
- An Evaluation of Task-Parallel Frameworks for Sparse Solvers on Multicore and Manycore CPU Architectures (2021) (1)
- Combinatorial Problems in High-Performance Computing: Partitioning (2009) (1)
- Virtual Microscopy: Distributed Image Storage, Retrieval, Analysis, and Visualization (2005) (1)
- Querying Co-regulated Genes on Diverse Gene Expression Datasets Via Biclustering. (2015) (1)
- On Symmetric Rectilinear Partitioning (2022) (1)
- Data management and query - Hypergraph partitioning for automatic memory hierarchy management (2006) (1)
- MICA: MicroRNA integration for active module discovery (2015) (1)
- A dynamic Level 2 PRA using ADAPT-MELCOR (2011) (1)
- A graphical tool for the analysis of event trees (2006) (1)
- Processing of Large-Scale Biomedical Images on a Cluster of Multicore CPUs and GPUs (2008) (1)
- Column-Segmented Sparse Matrix-Matrix Multiplication on Multicore CPUs (2021) (0)
- How to program on 50,000 processors. (2005) (0)
- RETRACTED: Color and texture analysis on emerging parallel architectures (2012) (0)
- HiCOMB Keynote and Invited Talks (2014) (0)
- Dynamic Decision and Data-Driven Strategies for the Optimal Management of Subsurface Geo-Systems (2011) (0)
- IPDPS 2011 Organization (2011) (0)
- FIST-HOSVD: fused in-place sequentially truncated higher order singular value decomposition (2022) (0)
- Data Flow Frameworks for Emerging Heterogeneous Architectures and Their Application to Biomedicine (2010) (0)
- SciDAC Institute: Combinatorial Scientific Computing and Petascale Simulations (CSCAPES). Final Report (2014) (0)
- HPC4BD 2017 workshop foreword and program committee (2017) (0)
- SONIC: streaming overlapping community detection (2015) (0)
- Hypergraph Partitioning (2011) (0)
- We implement ray-casting-based volume rendering and isosurface rendering methods using the Active Data Repository ( ADR ) for visualizing out-of-core data sets (2001) (0)
- GABB Keynote (2017) (0)
- Parallel Operating System (2011) (0)
- HCW 2018 Keynote Talk 2 (2018) (0)
- On Creating Efficient Object-relational Views of Scientific Datasets (2006) (0)
- Enabling Global Kinetic Simulations of the Magnetosphere via Petascale Computing (2009) (0)
- Message from the Workshops Chair (2010) (0)
- BOA: A partitioned view of genome assembly (2022) (0)
- PGAbB: A Block-Based Graph Processing Framework for Heterogeneous Platforms (2022) (0)
- Load balancing with Zoltan and Isorropia. (2010) (0)
- Visual analytics on the spread of pathogens (2016) (0)
- Exploiting Geometry and Adjacencies in Mesh Partitioning. (2012) (0)
- TRIGGER: TempoRal Interaction Graph GenEratoR (2021) (0)
- Pathway Aggregation in the Risk Assessment of Proliferation Resistance and Physical Protection (PR&PP) of Nuclear Energy Systems (2015) (0)
- (LA)yer-neigh(BOR) Sampling: Defusing Neighborhood Explosion in GNNs (2022) (0)
- EIGA (2021) (0)
- HYPERS: First Ever Multi-Dimensional Asynchronous Hybrid Simulations (2009) (0)
- Pentium (1995) (0)
- Algorithms for Offline Tracking of Connected Components in Large Evolving Networks (2012) (0)
- Identification of key mutation signatures from conservation analysis of gene-pseudogene families in human (2016) (0)
- A DAG partitioning-assisted list-based scheduler for homogeneous processors (2018) (0)
- THE CLOSENESS CENTRALITY OF EVOLVING NETWORKS ON CLUSTERS (2014) (0)
- Combinatorial Algorithms to Enable Computational Science and Engineering: Work from the CSCAPES Institute (2015) (0)
- Asynchronous Multi-Dimensional Hybrid Simulations of Magnetized Plasmas (2011) (0)
- Anthill : A Filter-Stream Based Run-Time Framework for Heterogenous Parallel and Distributed Environments (2007) (0)
- IPDPS 2009 Organization (2009) (0)
- Grid Computing Workshop 2005 Organizing Committee (2005) (0)
- Adaptive Multiscale Electromagnetic Particle Simulations (2010) (0)
- Contemporary Computing - 4th International Conference, IC3 2011, Noida, India, August 8-10, 2011. Proceedings (2011) (0)
- A Simple and Elegant Mathematical Formulation for the Acyclic DAG Partitioning Problem (2022) (0)
- Merging network patterns: a general framework to summarize biomedical network data (2012) (0)
- High Performance Computing/Domain Specific Language Symbiosis for Exascale Computing (2012) (0)
- Using architecture information and real-time resource state to reduce power consumption and communication costs in parallel applications. (2014) (0)
- Place-Transition Nets (2011) (0)
- Partitioning and Dynamic Load Balancing for Petascale Applications. (2007) (0)
- Parallel Prefix Algorithms (2011) (0)
- A Portable Sparse Solver Framework for Large Matrices on Heterogeneous Architectures (2022) (0)
- PRASE: PageRank-based Active Subnetwork Extraction (2013) (0)
- Parallelization of Mapping Algorithms for Next Generation Sequencing Applications (2009) (0)
- Extended Abstract : Convex Partitioning of Large-Scale Directed Graphs (2016) (0)
- An Expanding Hash-based Join Algorithm for Join Processing in Parallel and Distributed Environments (2003) (0)
- Foreword: 1st International Workshop on High Performance Computing for Big Data (2014) (0)
- Implementing Performance Portable Graph Algorithms Using Task-Based Execution (2021) (0)
- Load balancing via parallel hypergraph partitioners. (2005) (0)
- Abstract 2998: Identification of AURKA- and PTPRJ-interacting human colorectal cancer susceptibility alleles. (2013) (0)
- Fast recommendation on bibliographic networks with sparse-matrix ordering and partitioning (2013) (0)
- Special issue: Selected papers from IPDPS'18 (2019) (0)
- Guest Editor's Introduction: Selected Papers from ACM-BCB 2014 (2017) (0)
- Batch dynamic algorithm to find k-core hierarchies (2022) (0)
- Parallel graph algorithms by blocks: from I/O to algorithms (2021) (0)
- Data Flow Frameworks for Emerging Heterogeneous Architectures and Their Application to Biomedicine. (2010) (0)
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