Vincent M. Moulton

Vincent M. Moulton's AcademicInfluence.com Rankings

Vincent M. Moulton

Computer Science

#9214

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#9680

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#6422

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computer-science Degrees

Vincent M. Moulton

Biology

#12710

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#16205

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Bioinformatics

#154

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#156

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biology Degrees

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Vincent M. Moulton's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Neighbor-net: an agglomerative method for the construction of phylogenetic networks. (2002) (1725)
RDP3: a flexible and fast computer program for analyzing recombination (2010) (1669)
Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening. (2008) (461)
Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis. (2010) (354)
The impact of temperature on marine phytoplankton resource allocation and metabolism (2013) (319)
A toolkit for analysing large-scale plant small RNA datasets (2008) (280)
The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets (2012) (278)
High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families (2008) (269)
Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus (2017) (264)
Maximal Energy Graphs (2001) (253)
Reducing ligation bias of small RNAs in libraries for next generation sequencing (2012) (189)
Using consensus networks to visualize contradictory evidence for species phylogeny. (2004) (160)
NeighborNet: An Agglomerative Method for the Construction of Planar Phylogenetic Networks (2002) (156)
Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns. (2011) (143)
Structural and Functional Analysis of Viral siRNAs (2010) (134)
Delta plots: a tool for analyzing phylogenetic distance data. (2002) (131)
A comparison of RNA folding measures (2005) (128)
Analyzing mRNA expression identifies Smad3 as a microRNA-140 target regulated only at protein level. (2010) (126)
Experimental identification of microRNA-140 targets by silencing and overexpressing miR-140. (2008) (122)
Consensus Networks: A Method for Visualising Incompatibilities in Collections of Trees (2003) (120)
DCA: an efficient implementation of the divide-and-conquer approach to simultaneous multiple sequence alignment (1997) (117)
Basic Phylogenetic Combinatorics (2011) (112)
Bounding the Number of Hybridisation Events for a Consistent Evolutionary History (2005) (112)
Using supernetworks to distinguish hybridization from lineage-sorting (2008) (109)
Identification of novel small RNAs in tomato (Solanum lycopersicum) (2007) (103)
T-theory: An Overview (1996) (102)
Metrics on RNA Secondary Structures (2000) (101)
Likelihood analysis of phylogenetic networks using directed graphical models. (2000) (99)
Maximal Energy Bipartite Graphs (2003) (98)
PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing (2012) (95)
Orthology relations, symbolic ultrametrics, and cographs (2013) (95)
On the Hyperbolicity of Chordal Graphs (2001) (94)
Analyzing and Visualizing Sequence and Distance Data Using SplitsTree (1996) (94)
Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides (2010) (93)
Reconstructing the evolutionary history of polyploids from multilabeled trees. (2006) (88)
Untangling complex histories of genome mergings in high polyploids. (2007) (88)
Diverse correlation patterns between microRNAs and their targets during tomato fruit development indicates different modes of microRNA actions (2012) (80)
Hyperbolic Bridged Graphs (2002) (77)
Spectronet: a package for computing spectra and median networks. (2002) (76)
Use of RNA Secondary Structure for Studying the Evolution of RNase P and RNase MRP (2000) (73)
High throughput sequencing of microRNAs in chicken somites (2009) (71)
Prioritizing Populations for Conservation Using Phylogenetic Networks (2014) (70)
QNet: an agglomerative method for the construction of phylogenetic networks from weighted quartets. (2006) (65)
Evolutionary Rate and Genetic Drift of Hepatitis C Virus Are Not Correlated with the Host Immune Response: Studies of Infected Donor-Recipient Clusters (2000) (63)
From event-labeled gene trees to species trees (2012) (61)
Visualizing conflicting evolutionary hypotheses in large collections of trees: using consensus networks to study the origins of placentals and hexapods. (2005) (61)
Identifying recombinants in human and primate immunodeficiency virus sequence alignments using quartet scanning (2009) (58)
SuperQ: Computing Supernetworks from Quartets (2013) (58)
Improving the McClelland inequality for total π-electron energy (2000) (57)
S-system parameter estimation for noisy metabolic profiles using newton-flow analysis. (2007) (57)
Estimating parameters for generalized mass action models using constraint propagation. (2007) (55)
A Search for H/ACA SnoRNAs in Yeast Using MFE Secondary Structure Prediction (2003) (54)
Phylogenetic networks from multi-labelled trees (2006) (53)
RNA Folding Argues Against a Hot-Start Origin of Life (2000) (53)
Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis: Grapevine microRNAs and their targets (2010) (52)
Trinets encode tree-child and level-2 phylogenetic networks (2012) (50)
An explicit computation of the injective hull of certain finite metric spaces in terms of their associated Buneman complex (2002) (48)
Bridging the gap between omics and earth system science to better understand how environmental change impacts marine microbes (2015) (48)
On Line Arrangements in the Hyperbolic Plane (2002) (47)
Inferring polyploid phylogenies from multiply-labeled gene trees (2009) (46)
Boltzmann probability of RNA structural neighbors and riboswitch detection (2007) (45)
The UEA sRNA Workbench (version 4.4): a comprehensive suite of tools for analyzing miRNAs and sRNAs (2018) (43)
Optimizing phylogenetic diversity under constraints. (2007) (43)
PADRE: a package for analyzing and displaying reticulate evolution (2009) (42)
Unbiased descriptor and parameter selection confirms the potential of proteochemometric modelling (2005) (42)
Recombination analysis using directed graphical models. (2001) (41)
Mosaic Genomes of the Six Major Primate Lentivirus Lineages Revealed by Phylogenetic Analyses (2003) (41)
miRCat2: accurate prediction of plant and animal microRNAs from next-generation sequencing datasets (2017) (41)
Consistency of the Neighbor-Net Algorithm (2007) (40)
mRNA expression profiling reveals conserved and non-conserved miR-140 targets (2011) (38)
Peeling phylogenetic 'oranges' (2004) (38)
Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Improved consensus network techniques for genome-scale phylogeny. (2006) (36)
Species, clusters and the 'Tree of life': a graph-theoretic perspective. (2009) (35)
Biogeographic interpretation of splits graphs: least squares optimization of branch lengths. (2005) (35)
Imputing Supertrees and Supernetworks from Quartets (2006) (35)
Some variations on a theme by Buneman (1997) (35)
Encoding and Constructing 1-Nested Phylogenetic Networks with Trinets (2011) (34)
Retractions of Finite Distance Functions Onto Tree Metrics (1999) (34)
Tracking down noncoding RNAs. (2005) (33)
Deciphering the diversity of small RNAs in plants: the long and short of it. (2009) (33)
There are only finitely many distance-regular graphs of fixed valency greater than two (2009) (33)
Folding and unfolding phylogenetic trees and networks (2015) (33)
Activation of the innate immune response and interferon signalling in myotonic dystrophy type 1 and type 2 cataracts. (2012) (33)
Reconstructing Phylogenetic Level-1 Networks from Nondense Binet and Trinet Sets (2014) (31)
MicroRNAs Associated with Caste Determination and Differentiation in a Primitively Eusocial Insect (2017) (30)
Consistency of Topological Moves Based on the Balanced Minimum Evolution Principle of Phylogenetic Inference (2009) (30)
Some Uses of the Farris Transform in Mathematics and Phylogenetics—A Review (2007) (30)
How Much Information is Needed to Infer Reticulate Evolutionary Histories? (2014) (30)
Transforming phylogenetic networks: Moving beyond tree space. (2016) (29)
Tree-Based Unrooted Phylogenetic Networks (2017) (29)
Parameter Reconstruction for Biochemical Networks Using Interval Analysis (2006) (29)
PAREsnip2: a tool for high-throughput prediction of small RNA targets from degradome sequencing data using configurable targeting rules (2018) (29)
Novel distances for dollo data. (2012) (28)
Metrics on Multilabeled Trees: Interrelationships and Diameter Bounds (2011) (28)
Visualizing bacterial tRNA identity determinants and antideterminants using function logos and inverse function logos (2006) (28)
Comprehensive processing of high-throughput small RNA sequencing data including quality checking, normalization, and differential expression analysis using the UEA sRNA Workbench. (2017) (28)
Computing Phylogenetic Diversity for Split Systems (2008) (28)
DESNT: A Poor Prognosis Category of Human Prostate Cancer. (2017) (27)
A novel exploratory method for visual recombination detection (2003) (27)
Phylogenetic analysis of the full‐length SARS‐CoV sequences: Evidence for phylogenetic discordance in three genomic regions (2004) (27)
Predicting RNA Structure Using Mutual Information (2005) (26)
Trees, Taxonomy, and Strongly Compatible Multi-state Characters (1997) (26)
CoLIde: a bioinformatics tool for CO-expression-based small RNA Loci Identification using high-throughput sequencing data. (2013) (25)
Pruned median networks: a technique for reducing the complexity of median networks. (2001) (25)
TriLoNet: Piecing Together Small Networks to Reconstruct Reticulate Evolutionary Histories. (2016) (24)
RNAbor: a web server for RNA structural neighbors (2007) (24)
Exploring contradictory phylogenetic relationships in yeasts. (2008) (24)
Four Characters Suffice to Convexly Define a Phylogenetic Tree (2005) (24)
Computing evolutionary distinctiveness indices in large scale analysis (2012) (23)
Recognizing Treelike k-Dissimilarities (2012) (21)
The MinMax Squeeze: guaranteeing a minimal tree for population data. (2004) (21)
A comparison between two distinct continuous models in projective cluster theory: The median and the tight-span construction (1998) (21)
A parsimony-based metric for phylogenetic trees (2015) (21)
A regular decomposition of the edge-product space of phylogenetic trees (2008) (21)
More hyperenergetic molecular graphs (2000) (19)
Quasi-median graphs from sets of partitions (2002) (19)
Metric spaces in pure and applied mathematics (2001) (19)
The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole (2021) (19)
A scoring matrix approach to detecting miRNA target sites (2008) (19)
Delta additive and Delta ultra-additive maps, Gromov's trees, and the Farris transform (2005) (18)
MirPlex: a tool for identifying miRNAs in high-throughput sRNA datasets without a genome. (2013) (18)
Reconstructing Tree-Child Networks from Reticulate-Edge-Deleted Subnetworks (2018) (17)
Global discovery and characterization of small non-coding RNAs in marine microalgae (2014) (17)
A polynomial time algorithm for constructing the refined Buneman tree (1999) (17)
The Complexity of Deriving Multi-Labeled Trees from Bipartitions (2008) (17)
Spaces of phylogenetic networks from generalized nearest-neighbor interchange operations (2016) (17)
The UEA Small RNA Workbench: A Suite of Computational Tools for Small RNA Analysis. (2017) (16)
The ‘Butterfly effect’ in Cayley graphs with applications to genomics (2012) (16)
Finding sRNA generative locales from high-throughput sequencing data with NiBLS (2010) (16)
Consistency of the QNet algorithm for generating planar split networks from weighted quartets (2009) (16)
An Exceptional Split Geometry (2000) (16)
The Tight Span of an Antipodal Metric Space: Part II—Geometrical Properties (2004) (16)
Imputing supertrees and supernetworks from quartets. (2007) (15)
Consistency of the Neighbor-Net Algorithm (2007) (15)
Recovering normal networks from shortest inter-taxa distance information (2018) (15)
Optimal realizations of generic five-point metrics (2009) (15)
Encoding phylogenetic trees in terms of weighted quartets (2008) (15)
Quarnet Inference Rules for Level-1 Networks (2017) (14)
Fisher: a program for the detection of H/ACA snoRNAs using MFE secondary structure prediction and comparative genomics – assessment and update (2008) (14)
Hereditarily Optimal Realizations of Consistent Metrics (2006) (14)
On the tight span of an antipodal graph (2000) (13)
d Plots: A Tool for Analyzing Phylogenetic Distance Data (13)
Modeling the effect of copper availability on bacterial denitrification (2013) (13)
Bounds for phylogenetic network space metrics (2017) (13)
A Classification of the Six-point Prime Metrics (2000) (13)
The Phylogenetic Handbook: Split networks. A tool for exploring complex evolutionary relationships in molecular data (2009) (12)
Metatranscriptomes from diverse microbial communities: assessment of data reduction techniques for rigorous annotation (2014) (12)
Constructing and Drawing Regular Planar Split Networks (2012) (12)
Identifiability of tree-child phylogenetic networks under a probabilistic recombination-mutation model of evolution. (2017) (12)
An Algorithm for Computing Virtual Cut Points in Finite Metric Spaces (2007) (11)
Rooting for phylogenetic networks (2019) (11)
On the structure of the tight-span of a totally split-decomposable metric (2006) (11)
INDISIM-Paracoccus, an individual-based and thermodynamic model for a denitrifying bacterium. (2016) (11)
A note on extremal combinatorics of cyclic split systems. (2001) (11)
Small RNA discovery and characterisation in eukaryotes using high-throughput approaches. (2011) (11)
Cut points in metric spaces (2008) (11)
PAREameters: a tool for computational inference of plant miRNA–mRNA targeting rules using small RNA and degradome sequencing data (2020) (11)
The relation graph (2002) (11)
Geometric medians in reconciliation spaces of phylogenetic trees (2018) (10)
Replacing cliques by stars in quasi-median graphs (2004) (10)
The coherency index (1998) (10)
Six Points Suffice: How to Check for Metric Consistency (2001) (10)
Leaf-Reconstructibility of Phylogenetic Networks (2017) (10)
FiRePat—Finding Regulatory Patterns between sRNAs and Genes (2012) (10)
Reduction rules for the maximum parsimony distance on phylogenetic trees (2015) (10)
VisRD--visual recombination detection (2004) (10)
An Algorithm for Computing Cutpoints in Finite Metric Spaces (2009) (10)
On a Conjecture of Bannai and Ito: There are Finitely Many Distance-regular Graphs with Degree 5, 6 or 7 (2002) (10)
Compatible decompositions and block realizations of finite metrics (2008) (9)
Trees, tight-spans and point configurations (2011) (9)
The tight span of an antipodal metric space - Part I: : Combinatorial properties (2005) (9)
There are Finitely Many Triangle-Free Distance-Regular Graphs with Degree 8, 9 or 10 (2004) (9)
Three-Way Symbolic Tree-Maps and Ultrametrics (2017) (9)
Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans (2022) (9)
FlatNJ: a novel network-based approach to visualize evolutionary and biogeographical relationships. (2014) (8)
Computing a Consensus of Multilabeled Trees (2012) (8)
Recovering a phylogenetic tree using pairwise closure operations (2005) (8)
A novel stratification framework for predicting outcome in patients with prostate cancer (2020) (8)
Metagenome-assembled genomes of phytoplankton communities across the Arctic Circle (2020) (8)
Generating functions for multi-labeled trees (2013) (8)
Binets: Fundamental Building Blocks for Phylogenetic Networks (2017) (8)
On Simultaneous versus Iterative Multiple Sequence Alignment (1997) (8)
Evolution through segmental duplications and losses: a Super-Reconciliation approach (2020) (8)
Exploring and Visualizing Spaces of Tree Reconciliations. (2018) (8)
The complexity of comparing multiply-labelled trees by extending phylogenetic-tree metrics (2018) (8)
Hereditarily Optimal Realizations: Why are they Relevant in Phylogenetic Analysis, and how does one Compute them (2001) (7)
A Note on the Uniqueness of Coherent Decompositions (1997) (7)
Reconstructibility of unrooted level-k phylogenetic networks from distances (2019) (7)
Refining Phylogenetic Trees Given Additional Data: An Algorithm Based on Parsimony (2009) (7)
Constructing Phylogenetic Supernetworks from Quartets (2008) (7)
Vector Braids (1994) (7)
Recognizing and realizing cactus metrics (2019) (7)
Concerning the Relationship between Realizations and Tight Spans of Finite Metrics (2007) (6)
Reconciling event-labeled gene trees with MUL-trees and species networks (2018) (6)
Reconstructing the History of Syntenies Through Super-Reconciliation (2018) (6)
NATpare: a pipeline for high-throughput prediction and functional analysis of nat-siRNAs (2020) (6)
SPECTRE: a suite of phylogenetic tools for reticulate evolution (2017) (6)
The size of 3-compatible, weakly compatible split systems (2012) (6)
Identifying and Reconstructing Lateral Transfers from Distance Matrices by Combining the Minimum Contradiction Method and Neighbor-Net (2011) (6)
Optimal algorithms for computing edge weights in planar split networks (2012) (6)
Reconstructing Metabolic Networks Using Interval Analysis (2005) (6)
Convergence of Prognostic Gene Signatures Suggests Underlying Mechanisms of Human Prostate Cancer Progression (2020) (5)
The structure of spherical graphs (2004) (5)
A bound for the number of columns l(c, a, b) in the intersection array of a distance-regular graph (2003) (5)
Two theorems concerning the Bannai-Ito conjecture (2007) (5)
Antipodal Metrics and Split Systems (2002) (5)
Counting vertices and cubes in median graphs of circular split systems (2008) (5)
Blocks and Cut Vertices of the Buneman Graph (2011) (5)
Dissimilarity maps and substitution models: Some new results (1996) (5)
The minimum evolution problem is hard: a link between tree inference and graph clustering problems (2016) (5)
SplitsTree: A network based tool for exploring evolutionary relationships in molecular data (2003) (4)
The rigid hybrid number for two phylogenetic trees (2021) (4)
CoLIde (2013) (4)
Representing Partitions on Trees (2014) (4)
Affine Maps That Induce Polyhedral Complex Isomorphisms (2000) (4)
Characterizing Cell-Decomposable Metrics (2008) (4)
Block realizations of finite metrics and the tight-span construction I: The embedding theorem (2008) (4)
Fishing for minimum evolution trees with Neighbor-Nets (2014) (4)
Searching for realizations of finite metric spaces in tight spans (2012) (3)
Algorithms in Bioinformatics (2010) (3)
Characterizing block graphs in terms of their vertex-induced partitions (2014) (3)
INDISIM-Denitrification, an individual-based model for study the denitrification process (2020) (3)
Multiomics in the central Arctic Ocean for benchmarking biodiversity change (2022) (3)
UPGMA and the normalized equidistant minimum evolution problem (2017) (3)
A graph-theoretical invariant of topological spaces (2009) (3)
Characterizing weak compatibility in terms of weighted quartets (2009) (3)
Obtaining splits from cut sets of tight spans (2013) (3)
Phylogenetic Flexibility via Hall-Type Inequalities and Submodularity (2017) (3)
Optimal realizations and the block decomposition of a finite metric space (2021) (2)
Phylogenetic diversity and the maximum coverage problem (2009) (2)
Distinguishing between hot-spots and melting-pots of genetic diversity using haplotype connectivity (2010) (2)
Special Section: Phylogenetics (2009) (2)
Optimal realizations of two-dimensional, totally-decomposable metrics (2011) (2)
A ‘Non-Additive’ Characterization of $${\wp}$$-Adic Norms (2011) (2)
Embedding Complexity and Discrete Optimization II: A Dynamical Programming Approach to the Steiner-Tree Problem (2002) (2)
Time Series Data Mining Algorithms for Identifying Short RNA in Arabidopsis thaliana (2008) (2)
The split decomposition of a k-dissimilarity map (2010) (2)
There are only finitely many regular near polygons and geodetic distance-regular graphs with fixed valency (2009) (2)
Embedding Complexity and Discrete Optimization I: A New Divide and Conquer Approach to Discrete Optimization (2002) (2)
Dissimilarity maps and substitution models (1997) (2)
Reconstructibility of level-2 unrooted phylogenetic networks from shortest distances (2021) (2)
OSF-Builder: A new tool for constructing and representing evolutionary histories involving introgression. (2019) (2)
An algorithm for reconstructing level-2 phylogenetic networks from trinets (2021) (2)
Planar Median Graphs and Cubesquare-Graphs (2021) (2)
From event-labeled gene trees to species trees (2012) (1)
Revealing biological information using data structuring and automated learning. (2010) (1)
Orienting Undirected Phylogenetic Networks (2019) (1)
Cherry picking in forests: A new characterization for the unrooted hybrid number of two phylogenetic trees (2022) (1)
Correction to: Tree-Based Unrooted Phylogenetic Networks (2018) (1)
Injective optimal realizations of finite metric spaces (2012) (1)
Polynomial Invariants for Cactuses (2022) (1)
The space of equidistant phylogenetic cactuses (2021) (1)
Exploration of germplasm resources: progress and results from the application of molecular markers to the whole JIC Pisum collection (2004) (1)
Final Report for the ‘ Phylogenetics ’ Programme (2008) (1)
Encoding and ordering X-cactuses (2021) (1)
The polytopal structure of the tight-span of a totally split-decomposable metric (2018) (1)
Some new perspectives regarding sparse continuous models for discrete data structures (1999) (1)
Barriers in metric spaces (2009) (1)
Network analyses for exploring evolutionary relationships (2012) (1)
Injective split systems (2022) (1)
Global discovery and characterization of small non-coding RNAs in marine microalgae (2014) (1)
Hierarchies from Lowest Stable Ancestors in Nonbinary Phylogenetic Networks (2018) (1)
FDCA: Fast and Accurate Approximation to Sum-of-Pairs Score Optimal Multiple Sequence Alignment (1997) (1)
Minimum triplet covers of binary phylogenetic X-trees (2016) (1)
Combinatorial properties of triplet covers for binary trees (2017) (1)
Phylogenetic consensus networks: Computing a consensus of 1-nested phylogenetic networks (2021) (1)
Neighborhoods of Trees in Circular Orderings (2015) (1)
Overlaid species forests (2020) (1)
Four characters suffice (2003) (0)
BasicPhylogeneticCombinatorics. Systematic Biology Advance Access published 8, (2012) (0)
Addendum: addendum to on line arrangements in the hyperbolic plane (2003) (0)
HOPF-BRAID GROUPS (1998) (0)
Connectivity calculus (2003) (0)
Compatible split systems on a multiset (2022) (0)
Spaces of phylogenetic networks from generalized nearest-neighbor interchange operations (2015) (0)
The Nazirite Vow and Fertility (2011) (0)
Reconstructing Phylogenetic Level-1 Networks from Nondense Binet and Trinet Sets (2015) (0)
Addendum to "on line arrangements in the hyperbolic plane" [European J. Combin.23 (2002) 549-557] (2003) (0)
Posets and Spaces of $k$-Noncrossing RNA Structures (2022) (0)
Optimal algorithms for computing edge weights in planar split networks (2011) (0)
Computational Modeling of the Regulatory Network Organizing the Wound Response in Arabidopsis thaliana (2012) (0)
PAREameters: computational inference of plant microRNA-mRNA targeting rules using RNA sequencing data (2019) (0)
Erratum to: Neighborhoods of Trees in Circular Orderings (2015) (0)
Evolution through segmental duplications and losses: a Super-Reconciliation approach (2020) (0)
CPC volume 21 issue 1-2 Cover and Back matter (2012) (0)
Evaluating recombination patterns in human and primate immunodeficiency viruses evolution using a statistical quartet scanning approach (2007) (0)
Metatranscriptomes from diverse microbial communities: assessment of data reduction techniques for rigorous annotation (2014) (0)
Orthology relations, symbolic ultrametrics, and cographs (2012) (0)
From quartet and tree systems to trees (2011) (0)
Level-2 networks from shortest and longest distances (2021) (0)
Recognizing Treelike k-Dissimilarities (2012) (0)
Proceedings of the 10th international conference on Algorithms in bioinformatics (2010) (0)
Correction to: Tree-Based Unrooted Phylogenetic Networks (2018) (0)
Computing the blocks of a quasi-median graph (2012) (0)
Geometric medians in reconciliation spaces (2017) (0)
Computing evolutionary distinctiveness indices in large scale analysis (2012) (0)
Recovering normal networks from shortest inter-taxa distance information (2018) (0)
On Patchworks and Hierarchies (2012) (0)
Planar Rooted Phylogenetic Networks (2022) (0)
Basic Phylogenetic Combinatorics: Consistency of X -tree encodings (2011) (0)
Order Distances and Split Systems (2021) (0)
Phylogenetic Flexibility via Hall-Type Inequalities and Submodularity (2018) (0)
Planar Phylogenetic Networks (2022) (0)
Binets: Fundamental Building Blocks for Phylogenetic Networks (2017) (0)
From split systems to networks (2011) (0)
Folding and unfolding phylogenetic trees and networks (2016) (0)
Deep sea microbes and DNA cloning. (1996) (0)
From metrics to split systems and back (2011) (0)
Bounds for phylogenetic network space metrics (2017) (0)
Minimum triplet covers of binary phylogenetic X-trees (2017) (0)
Degradome Assisted Plant MicroRNA Prediction Under Alternative Annotation Criteria (2021) (0)
On Simultaneous versus IterativeMultiple Sequence AlignmentS (1997) (0)
A cubic-time algorithm for computing the trinet distance between level-1 networks (2017) (0)
Prostate Cancer DESNT : A Poor Prognosis Category of Human Prostate Cancer (2017) (0)
Neighborhoods of Trees in Circular Orderings (2014) (0)
Hierarchies from Lowest Stable Ancestors in Nonbinary Phylogenetic Networks (2018) (0)
Order Distances and Split Systems (2019) (0)
Quarnet Inference Rules for Level-1 Networks (2018) (0)
Lawrence Berkeley National Laboratory Recent Work Title Evolutionary genomics of the cold-Adapted diatom (2017) (0)
Recovering tree-child networks from shortest inter-taxa distance information (2017) (0)
From metrics to networks: The tight span (2011) (0)
An Example Article (2022) (0)
A) A hybridization network (number 7 from Table 1) with two hybridization nodes (2011) (0)
Trinets encode tree-child and level-2 phylogenetic networks (2013) (0)
Encoding and Constructing 1-Nested Phylogenetic Networks with Trinets (2012) (0)
Three-Way Symbolic Tree-Maps and Ultrametrics (2018) (0)
Combinatorial Challenge II (2011) (0)
Basic Phylogenetic Combinatorics: On measuring and removing inconsistencies (2011) (0)
Rooted trees and the Farris transform (2011) (0)
The 'Butterfly effect' in Cayley graphs, and its relevance for evolutionary genomics (2011) (0)
Tree-Based Unrooted Phylogenetic Networks (2017) (0)
A bound for the number of columns $\ell_{(c,a,b)}$ in the intersection array of a distance-regular graph (Algebraic Combinatorics) (2003) (0)
The ‘Butterfly effect’ in Cayley graphs with applications to genomics (2011) (0)
Forest-Based Networks (2022) (0)
DC A : An efficient implementation of the divide-and-conquer approach to simultaneous multiple sequence alignment (2005) (0)
Maps to and from quartet systems (2011) (0)
Maximum Parsimony for Tree Mixtures (2009) (0)
Diversities and the Generalized Circumradius (2021) (0)
A Novel Technique for Analysis of the Expression Profile of Genes in the Human Retina (2012) (0)
Erratum to: Neighborhoods of Trees in Circular Orderings (2015) (0)
Mathematics of Evolution and Phylogeny Library of Congress Cataloging in Publication Data (data Available) (2004) (0)
Weakly displaying trees in temporal tree-child network (2020) (0)
The UEA sRNA Toolkit: A User Guide for the Perl Implementation (2012) (0)
The size of 3-compatible, weakly compatible split systems (2012) (0)
Basic Phylogenetic Combinatorics: Encoding X -trees (2011) (0)
Basic Phylogenetic Combinatorics: Bibliography (2011) (0)
Phylogenetic networks (2007) (0)

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