Vineet Bafna

Q: What Schools Are Affiliated With Vineet Bafna

Vineet Bafna is affiliated with the following schools: University of California, San Diego, Pennsylvania State University

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Vineet Bafna

Computer Science

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Vineet Bafna

Biology

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Bioinformatics

#90

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Computational Biology

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#145

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Computer Science
Biology

Vineet Bafna's Degrees

PhD Computer Science University of California, San Diego
Masters Computer Science University of California, San Diego

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According to Wikipedia, Vineet Bafna is an Indian bioinformatician and professor of computer science and director of bioinformatics program at University of California, San Diego. He was elected a Fellow of the International Society for Computational Biology in 2019 for outstanding contributions to the fields of computational biology and bioinformatics. He has also been a member of the Research in Computational Molecular Biology conference steering committee.

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Vineet Bafna's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

An integrated map of genetic variation from 1,092 human genomes (2012) (7565)
The Sequence of the Human Genome (2001) (6572)
The Diploid Genome Sequence of an Individual Human (2007) (1842)
The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families (2007) (855)
Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer (2016) (672)
De novo somatic mutations in components of the PI3K-AKT3-mTOR pathway cause hemimegalencephaly (2012) (607)
Human beta-defensin 2 is a salt-sensitive peptide antibiotic expressed in human lung. (1998) (601)
InsPecT: identification of posttranslationally modified peptides from tandem mass spectra. (2005) (571)
The Dog Genome: Survey Sequencing and Comparative Analysis (2003) (556)
Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding. (2009) (549)
Genome rearrangements and sorting by reversals (1993) (515)
A Multidimensional Chromatography Technology for In-depth Phosphoproteome Analysis*S (2008) (515)
Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer. (2012) (498)
Extrachromosomal oncogene amplification drives tumor evolution and genetic heterogeneity (2017) (399)
Sorting by Transpositions (1998) (391)
A 2-Approximation Algorithm for the Undirected Feedback Vertex Set Problem (1999) (295)
Discovery and revision of Arabidopsis genes by proteogenomics (2008) (278)
Age-related changes in human crystallins determined from comparative analysis of post-translational modifications in young and aged lens: does deamidation contribute to crystallin insolubility? (2006) (267)
HapCUT: an efficient and accurate algorithm for the haplotype assembly problem (2008) (264)
Exome Sequencing Can Improve Diagnosis and Alter Patient Management (2012) (256)
Identification of post-translational modifications by blind search of mass spectra (2005) (241)
HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies (2017) (231)
Circular ecDNA promotes accessible chromatin and high oncogene expression (2019) (221)
SNPs Problems, Complexity, and Algorithms (2001) (208)
Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation. (2007) (203)
Improving gene annotation using peptide mass spectrometry. (2007) (183)
On the approximability of numerical taxonomy (fitting distances by tree metrics) (1996) (181)
SCOPE: a probabilistic model for scoring tandem mass spectra against a peptide database (2001) (177)
A polynomial time approximation scheme for minimum routing cost spanning trees (1998) (163)
QNet: A Tool for Querying Protein Interaction Networks (2007) (159)
Proteogenomics to discover the full coding content of genomes: a computational perspective. (2010) (151)
Extrachromosomal oncogene amplification in tumour pathogenesis and evolution (2019) (151)
Pattern Matching Algorithms (1997) (150)
Extrachromosomal DNA is associated with oncogene amplification and poor outcome across multiple cancers (2020) (149)
iDASH: integrating data for analysis, anonymization, and sharing (2012) (143)
Fast and Accurate Alignment of Multiple Protein Networks (2008) (141)
Deconvolution and Database Search of Complex Tandem Mass Spectra of Intact Proteins (2010) (136)
Haplotyping as Perfect Phylogeny: A Direct Approach (2003) (132)
An MCMC algorithm for haplotype assembly from whole-genome sequence data. (2008) (132)
Sorting by Reversals: Genome Rearrangements in Plant Organelles and Evolutionary History of X Chromosome (1995) (130)
Optimal haplotype block-free selection of tagging SNPs for genome-wide association studies. (2004) (122)
Efficacy, safety, and lot-to-lot immunogenicity of an inactivated SARS-CoV-2 vaccine (BBV152): interim results of a randomised, double-blind, controlled, phase 3 trial (2021) (115)
Compressing Genomic Sequence Fragments Using SlimGene (2010) (114)
NAD metabolic dependency in cancer is shaped by gene amplification and enhancer remodelling (2019) (114)
A Survey of Computational Methods for Determining Haplotypes (2002) (112)
Comparative proteogenomics: combining mass spectrometry and comparative genomics to analyze multiple genomes. (2008) (111)
Proteogenomic database construction driven from large scale RNA-seq data. (2014) (110)
Whole-genome sequencing uncovers the genetic basis of chronic mountain sickness in Andean highlanders. (2013) (110)
Exploring the landscape of focal amplifications in cancer using AmpliconArchitect (2019) (108)
Experimental selection of hypoxia-tolerant Drosophila melanogaster (2011) (105)
Protein Identification Using Top-Down Spectra* (2012) (101)
Evaluation of Paired-End Sequencing Strategies for Detection of Genome Rearrangements in Cancer (2008) (97)
A Covering Method for Detecting Genetic Associations between Rare Variants and Common Phenotypes (2010) (97)
Haplotypes and informative SNP selection algorithms: don't block out information (2003) (95)
Computing Similarity between RNA Strings (1996) (94)
Learning Natural Selection from the Site Frequency Spectrum (2013) (93)
Approximation Algorithms for Multiple Sequence Alignment (1994) (91)
Practical Algorithms and Fixed-Parameter Tractability for the Single Individual SNP Haplotyping Problem (2002) (89)
Evidence for large inversion polymorphisms in the human genome from HapMap data. (2007) (85)
Peptide sequence tags for fast database search in mass-spectrometry. (2005) (83)
Using Genome Query Language to uncover genetic variation (2014) (83)
Whole genome sequencing of Ethiopian highlanders reveals conserved hypoxia tolerance genes (2014) (80)
Inferring gene ontologies from pairwise similarity data (2014) (79)
An Automated Proteogenomic Method Uses Mass Spectrometry to Reveal Novel Genes in Zea mays* (2013) (79)
The Conserved Exon Method for Gene Finding (2000) (78)
Expansion of the mycobacterial "PUPylome". (2010) (77)
Nonoverlapping Local Alignments (weighted Independent Sets of Axis-parallel Rectangles) (1996) (73)
Virmid: accurate detection of somatic mutations with sample impurity inference (2013) (72)
Robustness of Inference of Haplotype Block Structure (2003) (66)
Sensitive gene fusion detection using ambiguously mapping RNA-Seq read pairs (2011) (64)
Constant Ratio Approximations of the Weighted Feedback Vertex Set Problem for Undirected Graphs (1995) (63)
On de novo interpretation of tandem mass spectra for peptide identification (2003) (63)
Searching genomes for noncoding RNA using FastR (2005) (63)
Skmer: assembly-free and alignment-free sample identification using genome skims (2018) (61)
Polynomial and APX-hard cases of the individual haplotyping problem (2005) (60)
High-altitude adaptation in humans: from genomics to integrative physiology (2017) (58)
Identification of post-translational modifications via blind search of mass-spectra (2005) (57)
Sorting permutations by tanspositions (1995) (57)
ecDNA hubs drive cooperative intermolecular oncogene expression (2020) (57)
Construction of a medicinal leech transcriptome database and its application to the identification of leech homologs of neural and innate immune genes (2010) (55)
Proteogenomic strategies for identification of aberrant cancer peptides using large‐scale next‐generation sequencing data (2014) (54)
Sorting Permutations by Transpositions (1995) (54)
Shotgun protein sequencing by tandem mass spectra assembly. (2004) (54)
Phosphorylation-specific MS/MS scoring for rapid and accurate phosphoproteome analysis. (2008) (54)
Accurate annotation of peptide modifications through unrestrictive database search. (2008) (53)
Cerulean: A Hybrid Assembly Using High Throughput Short and Long Reads (2013) (53)
RAPID detection of gene-gene interactions in genome-wide association studies (2010) (51)
Structural Alignment of Pseudoknotted RNA (2008) (48)
Identifying the Favored Mutation in a Positive Selective Sweep (2018) (45)
A Decomposition Theory for Phylogenetic Networks and Incompatible Characters (2007) (45)
Template Proteogenomics: Sequencing Whole Proteins Using an Imperfect Database* (2010) (44)
Orthologous repeats and mammalian phylogenetic inference. (2005) (44)
Annotation of the Zebrafish Genome through an Integrated Transcriptomic and Proteomic Analysis (2014) (44)
Diversity, Productivity, and Stability of an Industrial Microbial Ecosystem (2016) (43)
Consensus Folding of Unaligned RNA Sequences Revisited (2005) (43)
An Algorithm for Orienting Graphs Based on Cause-Effect Pairs and Its Applications to Orienting Protein Networks (2008) (42)
FastR: fast database search tool for non-coding RNA (2004) (42)
The number of recombination events in a sample history: conflict graph and lower bounds (2004) (42)
Population sequencing of two endocannabinoid metabolic genes identifies rare and common regulatory variants associated with extreme obesity and metabolite level (2010) (41)
Endothelin receptor B, a candidate gene from human studies at high altitude, improves cardiac tolerance to hypoxia in genetically engineered heterozygote mice (2015) (41)
Unrestrictive identification of post-translational modifications through peptide mass spectrometry (2006) (40)
ViFi: accurate detection of viral integration and mRNA fusion reveals indiscriminate and unregulated transcription in proximal genomic regions in cervical cancer (2018) (39)
Targeted genotyping of variable number tandem repeats with adVNTR (2017) (39)
A sequence-based filtering method for ncRNA identification and its application to searching for riboswitch elements (2006) (39)
Detecting non-adjoining correlations with signals in DNA (1998) (38)
An algorithmic approach for breakage-fusion-bridge detection in tumor genomes (2013) (37)
Wessim: a whole-exome sequencing simulator based on in silico exome capture (2013) (37)
InsPecT : Fast and accurate identification of post-translationally modified peptides from tandem mass spectra (2005) (36)
A Note on Efficient Computation of Haplotypes via Perfect Phylogeny (2004) (36)
Accurate Mass Spectrometry Based Protein Quantification via Shared Peptides (2012) (36)
The elusive evidence for chromothripsis (2014) (35)
Automated querying and identification of novel peptides using MALDI mass spectrometric imaging. (2011) (35)
Combinatorial Problems Arising in SNP and Haplotype Analysis (2003) (34)
Mapping clustered mutations in cancer reveals APOBEC3 mutagenesis of ecDNA (2022) (34)
Longitudinal assessment of tumor development using cancer avatars derived from genetically engineered pluripotent stem cells (2020) (33)
Protein-Protein Interaction Network Evaluation for Identifying Potential Drug Targets (2010) (32)
Beyond DNA barcoding: The unrealized potential of genome skim data in sample identification (2020) (31)
Ultraaccurate genome sequencing and haplotyping of single human cells (2017) (30)
The genetic basis of chronic mountain sickness. (2014) (30)
Advanced Proteogenomic Analysis Reveals Multiple Peptide Mutations and Complex Immunoglobulin Peptides in Colon Cancer. (2015) (29)
Next-Generation Sequencing of Plasmodium vivax Patient Samples Shows Evidence of Direct Evolution in Drug-Resistance Genes. (2015) (29)
Resurrection of a clinical antibody: Template proteogenomic de novo proteomic sequencing and reverse engineering of an anti‐lymphotoxin‐α antibody (2011) (29)
AmpliconReconstructor integrates NGS and optical mapping to resolve the complex structures of focal amplifications (2020) (27)
Variable number tandem repeats mediate the expression of proximal genes (2020) (27)
AMASS: algorithm for MSI analysis by semi-supervised segmentation. (2011) (27)
Clear: Composition of Likelihoods for Evolve and Resequence Experiments (2016) (26)
Designing deep sequencing experiments: detecting structural variation and estimating transcript abundance (2010) (26)
Senp1 drives hypoxia-induced polycythemia via GATA1 and Bcl-xL in subjects with Monge’s disease (2016) (25)
Strobe sequence design for haplotype assembly (2011) (24)
New Insights into the Genetic Basis of Monge’s Disease and Adaptation to High-Altitude (2017) (24)
Optimization of primer design for the detection of variable genomic lesions in cancer (2007) (24)
Extrachromosomal DNA: An Emerging Hallmark in Human Cancer. (2021) (22)
MHC class I loaded ligands from breast cancer cell lines: A potential HLA-I-typed antigen collection. (2018) (22)
The TGFβ1 Promoter SNP C-509T and Food Sensitization Promote Esophageal Remodeling in Pediatric Eosinophilic Esophagitis (2015) (22)
Genetic Simulation Tools for Post‐Genome Wide Association Studies of Complex Diseases (2015) (21)
On the design of clone-based haplotyping (2013) (20)
IEEE/ACM TRANSACTIONS ON (2004) (20)
EcSeg: Semantic Segmentation of Metaphase Images Containing Extrachromosomal DNA (2019) (20)
Amplification and thrifty single-molecule sequencing of recurrent somatic structural variations (2014) (19)
Extrachromosomal DNA (ecDNA) in cancer pathogenesis. (2021) (19)
Combinatorics of the Breakage-Fusion-Bridge Mechanism (2012) (19)
TCLUST: A Fast Method for Clustering Genome-Scale Expression Data (2011) (19)
ProteoStorm: An Ultrafast Metaproteomics Database Search Framework. (2018) (18)
SNPs Problems, Algorithms and Complexity (2001) (18)
On the approximability of numerical taxonomy (1996) (18)
Inference about Recombination from Haplotype Data: Lower Bounds and Recombination Hotspots (2006) (17)
Predicting Carriers of Ongoing Selective Sweeps without Knowledge of the Favored Allele (2015) (17)
Abstractions for genomics (2013) (17)
Improved Recombination Lower Bounds for Haplotype Data (2005) (17)
Practical 4'-phosphopantetheine active site discovery from proteomic samples. (2011) (15)
The Ribosome Scanning Model for Translation Initiation: Implications for Gene Prediction and Full-Length cDNA Detection (1998) (15)
Non-Overlapping Local Alignments (Weighted Independent Sets of Axis Parallel Rectangles) (1995) (15)
Integrating scientific cultures (2007) (15)
Plasticity of extrachromosomal and intrachromosomal BRAF amplifications in overcoming targeted therapy dosage challenges. (2021) (15)
Proteogenomic annotation of the Chinese hamster reveals extensive novel translation events and endogenous retroviral elements (2018) (15)
Extrachromosomal DNA in HPV-Mediated Oropharyngeal Cancer Drives Diverse Oncogene Transcription (2021) (14)
The evolutionary dynamics of extrachromosomal DNA in human cancers (2022) (13)
Speeding up tandem mass spectral identification using indexes (2012) (12)
Principles of ecDNA random inheritance drive rapid genome change and therapy resistance in human cancers (2021) (12)
Detecting Breakage Fusion Bridge cycles in tumor genomes -- an algorithmic approach (2013) (11)
Not All Insertion Methods Yield Constant Approximate Tours in the Euclidean Plane (1994) (11)
The impact of contaminants on the accuracy of genome skimming and the effectiveness of exclusion read filters (2020) (10)
Reconstructing Breakage Fusion Bridge Architectures Using Noisy Copy Numbers (2014) (10)
Ligand-Receptor Pairing Via Tree Comparison (2000) (10)
Shared Peptides in Mass Spectrometry Based Protein Quantification (2009) (10)
Targeted profiling of human extrachromosomal DNA by CRISPR-CATCH (2021) (10)
Optical genome mapping identifies rare structural variations as predisposition factors associated with severe COVID-19 (2022) (9)
Reprever: resolving low-copy duplicated sequences using template driven assembly (2013) (9)
Sample Reproducibility of Genetic Association Using Different Multimarker TDTs in Genome-Wide Association Studies: Characterization and a New Approach (2012) (9)
Estimating repeat spectra and genome length from low-coverage genome skims with RESPECT (2021) (8)
Novel insight into the genetic basis of high-altitude pulmonary hypertension in Kyrgyz highlanders (2018) (8)
Systems Biology and Computational Proteomics, Joint RECOMB 2006 Satellite Workshops on Systems Biology and on Computational Proteomics, San Diego, CA, USA, December 1-3, 2006, Revised Selected Papers (2007) (7)
CONSULT: accurate contamination removal using locality-sensitive hashing (2021) (6)
Evaluating genome architecture of a complex region via generalized bipartite matching (2013) (6)
The Antibody Repertoire of Colorectal Cancer* (2017) (6)
On the Approximability of Reachability-Preserving Network Orientations (2011) (6)
Frequent extrachromosomal oncogene amplification drives aggressive tumors (2019) (6)
ARID1B, a molecular suppressor of erythropoiesis, is essential for the prevention of Monge’s disease (2022) (5)
Circular Permutations and Genome Shuffling (2000) (5)
Modeling the Breakage-Fusion-Bridge Mechanism: Combinatorics and Cancer Genomics (2012) (5)
Mass spectrometry and computational proteomics (2004) (5)
The landscape of extrachromosomal circular DNA in medulloblastoma (2021) (5)
Optimizing PCR Assays for DNA-Based Cancer Diagnostics (2010) (4)
Computing the Statistical Significance of Overlap between Genome Annotations with iStat. (2019) (4)
Haplotyping as Perfect Phylogeny (2002) (4)
Constant Ratio Approximations of Feedback Vertex Sets in Weighted Undirected Graphs (1996) (4)
FaNDOM: Fast nested distance-based seeding of optical maps (2021) (4)
Fine-mapping the Favored Mutation in a Positive Selective Sweep (2017) (4)
Glioblastomas derived from genetically modified pluripotent stem cells recapitulate pathobiology (2019) (3)
Tests of Selection in Pooled Case-Control Data: An Empirical Study (2011) (3)
Prevalence of hereditary tubulointerstitial kidney diseases in the German Chronic Kidney Disease study (2021) (3)
On the impact of contaminants on the accuracy of genome skimming and the effectiveness of exclusion read filters (2019) (3)
Monte carlo simulation in systems biology (2010) (3)
Circular ecDNA promotes accessible chromatin and high oncogene expression (2019) (2)
Host genome analysis of structural variations by Optical Genome Mapping provides clinically valuable insights into genes implicated in critical immune, viral infection, and viral replication pathways in patients with severe COVID-19. (2021) (2)
Reconstructing and characterizing focal amplifications in cancer using AmpliconArchitect (2018) (2)
Computing Similarity between Rna Strings 1 (1996) (2)
Multiple mechanisms drive genomic adaptation to extreme O2 levels in Drosophila melanogaster (2021) (2)
Extrachromosomal DNA in the cancerous transformation of Barrett’s oesophagus (2022) (2)
Epigenetic dysregulation from chromosomal transit in micronuclei (2022) (2)
Comprehensive analysis of clustered mutations in cancer reveals recurrent APOBEC3 mutagenesis of ecDNA (2021) (2)
Haplotype Allele Frequency (HAF) Score: Predicting Carriers of Ongoing Selective Sweeps Without Knowledge of the Adaptive Allele (2015) (2)
Extrachromosomal DNA (ecDNA) carrying amplified oncogenes as a biomarker for insensitivity to pembrolizumab treatment in gastric cancer patients. (2020) (2)
DeepViFi: detecting oncoviral infections in cancer genomes using transformers (2022) (2)
Detecting tandem repeat variants in coding regions using code-adVNTR (2022) (2)
Extrachromosomal DNA in Cancer. (2022) (1)
Proceedings of the joint 2006 satellite conference on Systems biology and computational proteomics (2006) (1)
Variable Number Tandem Repeats (VNTRs) as modifiers of breast cancer risk in carriers of BRCA1 185delAG (2022) (1)
Extrachromosomal DNA is associated with oncogene amplification and poor outcome across multiple cancers (2020) (1)
Abstractions for Genomics : Or , which way to the Genomic Information Age ? (2011) (1)
Improving gene annotation using peptide mass spectrometry Material Supplemental (2007) (1)
On the design of clone-based haplotyping (2013) (1)
High-altitude adaptation in humans: from genomics to integrative physiology (2017) (1)
Correction: Predicting Carriers of Ongoing Selective Sweeps without Knowledge of the Favored Allele (2016) (1)
InPhaDel: integrative shotgun and proximity-ligation sequencing to phase deletions with single nucleotide polymorphisms (2016) (1)
Optimizing PCR Assays for DNA Based Cancer Diagnostics (2009) (1)
Virmid: accurate detection of somatic mutations with sample impurity inference (2013) (1)
Parallel Implementation of Logic Languages (1990) (1)
AmpliconReconstructor: Integrated analysis of NGS and optical mapping resolves the complex structures of focal amplifications in cancer (2020) (1)
Structural Alignment of Pseudoknotted RNA (2006) (1)
Research in Computational Molecular Biology (2011) (1)
A Note on Computing Interval Overlap Statistics (2019) (1)
Uncertainty Quantification Using Subsampling for Assembly-Free Estimates of Genomic Distance and Phylogenetic Relationships (2022) (1)
Genome-Wide Association Studies Optimal Haplotype Block-Free Selection of Tagging SNPs for Material Supplemental (2004) (1)
Skmer: assembly-free and alignment-free sample identification using genome skims (2019) (1)
OMIC-01. THE LANDSCAPE OF EXTRACHROMOSOMAL CIRCULAR DNA IN MEDULLOBLASTOMA SUBGROUPS (2021) (0)
Longitudinal assessment of tumor development using cancer avatars derived from genetically engineered pluripotent stem cells (2020) (0)
Whole genome sequencing of Ethiopian highlanders reveals conserved hypoxia tolerance genes (2014) (0)
Bioinformatics for Biologists: Identifying the genetic basis of disease (2011) (0)
CSE 280 Class Projects ( Suggested ) Vineet Bafna January 22 , 2008 Projects 1 Population history (2008) (0)
2009 Reviewer's List (2010) (0)
Heterozygous Tropomodulin 3 mice have improved lung vascularization after chronic hypoxia. (2021) (0)
Extrachromosomal oncogene amplification in tumour pathogenesis and evolution (2019) (0)
FastViFi: Fast and accurate detection of (Hybrid) Viral DNA and RNA (2022) (0)
sequence data An MCMC algorithm for haplotype assembly from whole-genome (2008) (0)
Ultra-accurate Genome Sequencing and Haplotyping of Single Human Cells (2017) (0)
IDF21-0182 Evaluating diabetes related distress in people with Type 2 DM – Insights from Diabefly Digital Therapeutics Platform (2022) (0)
Long-read RNA-Seq of human papillomavirus-associated head and neck cancer reveals novel alternatively spliced viral RNA isoforms (2020) (0)
Exploring the landscape of focal amplifications in cancer using AmpliconArchitect (2019) (0)
Resurrection of a clinical antibody: Template proteogenomic de novo proteomic sequencing and reverse engineering of an anti‐lymphotoxin‐α antibody (2011) (0)
Transcriptional immune suppression and upregulation of double stranded DNA damage and repair repertoires in ecDNA-containing tumors (2023) (0)
A CNN-based cell tracking method for multi-slice intravital imaging data (2021) (0)
Oxygen‐Directed Laboratory Evolution and Conserved Mechanisms Underlying Hypoxia Tolerance (2020) (0)
2008 Reviewers List (2009) (0)
Correction (2013) (0)
DDDR-24. INTEGRATED ANALYSIS OF SINGLE CELL CHROMATIN ACCESSIBILITY AND RNA EXPRESSION IDENTIFIED COMMON VULNERABILITY DESPITE GLIOBLASTOMA HETEROGENEITY (2022) (0)
Abstract 3768: Epigenetic dysregulation from chromosomal transit in micronuclei (2022) (0)
Deciphering the genetic basis of common diseases by integrated functional annotation of common and rare variants (2010) (0)
Lawrence Berkeley National Laboratory Title The Sorcerer II Global Ocean Sampling Expedition : Expanding the Universe of Protein Families Permalink (2007) (0)
Identification of Candidate Genes Involved in the Survival of Drosophila in Extreme O2 Environments (2020) (0)
Orthologous repeats and mammalian phylogenetic inference data (2005) (0)
Author Correction: Longitudinal assessment of tumor development using cancer avatars derived from genetically engineered pluripotent stem cells (2020) (0)
Assembly-free and alignment-free barcoding from genome skims (2018) (0)
Proceedings of the 15th Annual international conference on Research in computational molecular biology (2011) (0)
Interactive Genomics: Rapidly Querying Genomes in the Cloud (2013) (0)
The antibody repertoire of colorectal cancer (2017) (0)
Research in Computational Molecular Biology - 21st Annual International Conference, RECOMB 2017, Hong Kong, China, May 3-7, 2017, Proceedings (2017) (0)
Using Genome Query Language ( GQL ) to uncover genetic variation (2013) (0)
A Genomic Approach to Understanding Chronic Mountain Sickness (2014) (0)
Quantifying the uncertainty of assembly-free genome-wide distance estimates and phylogenetic relationships using subsampling. (2022) (0)
Orthologous Repeats and Phylogenetic Inference (2004) (0)
NAD metabolic dependency in cancer is shaped by gene amplification and enhancer remodelling (2019) (0)
NEURODEGENRATIVE DISORDERS: CURRENT STATUS AND FUTURE PROSPECTIVE (2015) (0)
Abstract 3130: Extrachromosomal DNA in the cancerous transformation of Barrett’s esophagus (2023) (0)
TRviz: a python library for decomposing and visualizing tandem repeat sequences (2023) (0)
Research in Computational Molecular Biology : 15th Annual International Conference, RECOMB 2011, Vancouver, BC, Canada, March 28-31, 2011 : proceedings (2011) (0)
Preface: Research in Computational Molecular Biology (RECOMB 2011) (2011) (0)
Cancer avatars derived from genetically engineered pluripotent stem cells allow for longitudinal assessment of tumor development (2019) (0)
Technology developments and applications (2009) (0)
A deep population reference panel of tandem repeat variation (2023) (0)
Evaluating genome architecture of a complex region via generalized bipartite matching (2013) (0)
SNPs Problems , Complexity and (2001) (0)
Identifying the genetic basis of disease (2013) (0)
EXPLORING THE OCEAN'S MICROBES: SEQUENCING THE SEVEN SEAS (2006) (0)
96-29 July 1996 Constant Ratio Approximations of Feedback Vertex Sets in Weighted Undirected Graphs 1 by Vineet Bafna (1996) (0)
Abstract 95: The landscape of extrachromosomal circular DNA in medulloblastoma subgroups (2021) (0)
SNPs Problems , Complexity and (2001) (0)
PHARMACOLOGICAL EFFECT OF FICUS BENGHLENSIS LEAF EXTRACT ON SERUM URATE LEVELS AND VARIUS PARAMETER IN OXONATE INDUCED HYPERURICEMIC ANIMALS. (2015) (0)
Form follows function in cancer genomes (2022) (0)
Algorithms for Genetics : Introduction , and sources of variation Scribe : (2007) (0)
Author Correction: Longitudinal assessment of tumor development using cancer avatars derived from genetically engineered pluripotent stem cells (2020) (0)
DeepViFi (2022) (0)
BuildMS 2 DB BuildORFDB Inspect SplitNovel DetermineGenes Genome Spectra Novel Genes Proteome Refined Genes Identified Proteins Homology , ESTs (2009) (0)
Mapping of peptides and proteins in Leech (Hirudo medicinalis) by Mass Spectrometry Imaging (2010) (0)
Director's Letter Mission and Goals Institute Partners Organizing Committee for Emphasis Year Scientific Advisory Committee 20042005 Local Scientific Advisory Committee Program Participa Tion Workshop 4: Emerging Genomic Technologies and Data Inte Gration Problems: February 2124, 2005 (0)

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