Webb Miller | Academic Influence

Webb Miller's AcademicInfluence.com Rankings

Webb Miller

Computer Science

#1066

World Rank

#1104

Historical Rank

#563

USA Rank

Database

#80

World Rank

#82

Historical Rank

#46

USA Rank

computer-science Degrees

Webb Miller

Biology

#665

World Rank

#1168

Historical Rank

#370

USA Rank

Bioinformatics

#7

World Rank

#7

Historical Rank

#2

USA Rank

Computational Biology

#9

World Rank

#9

Historical Rank

#5

USA Rank

biology Degrees

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Computer Science
Biology

Webb Miller's Degrees

PhD Computer Science Stanford University
Bachelors Mathematics University of California, Berkeley

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Why Is Webb Miller Influential?

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According to Wikipedia, Webb Colby Miller is an American bioinformatician who is professor in the Department of Biology and the Department of Computer Science and Engineering at The Pennsylvania State University. Education Miller attended Whitman College, and received his Ph.D. in mathematics from the University of Washington in 1969.

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Webb Miller's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Basic local alignment search tool. (1990) (83318)
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. (1997) (51960)
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project (2007) (5196)
A Greedy Algorithm for Aligning DNA Sequences (2000) (4654)
Initial sequencing and comparative analysis of the mouse genome. (2002) (4609)
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. (2005) (3639)
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution (2004) (2417)
The ENCODE (ENCyclopedia Of DNA Elements) Project (2004) (2194)
Basic local alignment search tool. Journal of Molecular Biology (1990) (2131)
Galaxy: a platform for interactive large-scale genome analysis. (2005) (2084)
An integrated encyclopedia of DNA elements in the human genome (2012) (2080)
Genome sequence of the Brown Norway rat yields insights into mammalian evolution (2004) (2053)
Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 (2001) (1840)
A User's Guide to the Encyclopedia of DNA Elements (ENCODE) (2011) (1467)
Aligning multiple genomic sequences with the threaded blockset aligner. (2004) (1439)
Human-mouse alignments with BLASTZ. (2003) (1320)
Evolutionary and Biomedical Insights from the Rhesus Macaque Genome (2007) (1309)
Optimal alignments in linear space (1988) (1268)
PipMaker--a web server for aligning two genomic DNA sequences. (2000) (1258)
A time-efficient, linear-space local similarity algorithm (1991) (1023)
Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes (2003) (830)
A computer program for aligning a cDNA sequence with a genomic DNA sequence. (1998) (794)
Genome analysis of the platypus reveals unique signatures of evolution (2008) (711)
Comparative analyses of multi-species sequences from targeted genomic regions (2003) (666)
Comparison of DNA sequences with protein sequences. (1997) (618)
Metagenomics to Paleogenomics: Large-Scale Sequencing of Mammoth DNA (2006) (572)
Comparative and demographic analysis of orang-utan genomes (2011) (545)
Identification and Classification of Conserved RNA Secondary Structures in the Human Genome (2006) (538)
Genome 10K: a proposal to obtain whole-genome sequence for 10,000 vertebrate species. (2009) (511)
CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets (2009) (509)
Complete Khoisan and Bantu genomes from southern Africa (2010) (448)
Using genomic data to unravel the root of the placental mammal phylogeny. (2007) (438)
Improvements in the HbVar database of human hemoglobin variants and thalassemia mutations for population and sequence variation studies (2004) (395)
Updates of the HbVar database of human hemoglobin variants and thalassemia mutations (2013) (371)
Sequencing the nuclear genome of the extinct woolly mammoth (2008) (342)
Long human-mouse sequence alignments reveal novel regulatory elements: a reason to sequence the mouse genome. (1997) (338)
Protein sequence similarity searches using patterns as seeds. (1998) (322)
Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change (2012) (319)
Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution. (2003) (298)
28-way vertebrate alignment and conservation track in the UCSC Genome Browser. (2007) (293)
Reconstructing contiguous regions of an ancestral genome. (2006) (292)
Transcription-associated mutational asymmetry in mammalian evolution (2003) (291)
Molecular and Genomic Data Identify the Closest Living Relative of Primates (2007) (288)
The Chlamydomonas reinhardtii Plastid Chromosome (2002) (282)
Automatic Generation of Floating-Point Test Data (1976) (270)
Mulan: multiple-sequence local alignment and visualization for studying function and evolution. (2005) (265)
MultiPipMaker and supporting tools: alignments and analysis of multiple genomic DNA sequences (2003) (254)
Evolution and functional classification of vertebrate gene deserts. (2005) (249)
Locus control regions of mammalian beta-globin gene clusters: combining phylogenetic analyses and experimental results to gain functional insights. (1997) (246)
Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences. (2005) (235)
Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression. (2009) (222)
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome. (2007) (221)
Scoring Pairwise Genomic Sequence Alignments (2001) (216)
HbVar database of human hemoglobin variants and thalassemia mutations: 2007 update (2007) (212)
A file comparison program (1985) (211)
Whole-Genome Shotgun Sequencing of Mitochondria from Ancient Hair Shafts (2007) (207)
Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis (2006) (206)
Genetic diversity and population structure of the endangered marsupial Sarcophilus harrisii (Tasmanian devil) (2011) (196)
The structure and evolution of centromeric transition regions within the human genome (2004) (191)
A space-efficient algorithm for local similarities (1990) (191)
Prepublication data sharing (2009) (190)
The Chlamydomonas reinhardtii Plastid Chromosome: Islands of Genes in a Sea of Repeats (2002) (185)
Sequence comparison with concave weighting functions. (1988) (175)
Fast-evolving noncoding sequences in the human genome (2007) (170)
Intraspecific phylogenetic analysis of Siberian woolly mammoths using complete mitochondrial genomes (2008) (167)
Approximate matching of regular expressions. (1989) (163)
Aligning two sequences within a specified diagonal band (1992) (160)
Reconstructing large regions of an ancestral mammalian genome in silico. (2004) (158)
Characterization of the human and mouse unconventional myosin XV genes responsible for hereditary deafness DFNB3 and shaker 2. (1999) (157)
zPicture: dynamic alignment and visualization tool for analyzing conservation profiles. (2004) (154)
Large-scale comparative sequence analysis of the human and murine Bruton's tyrosine kinase loci reveals conserved regulatory domains. (1997) (152)
A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly. (2007) (151)
Distinguishing regulatory DNA from neutral sites. (2003) (151)
The gene mutated in bare patches and striated mice encodes a novel 3β-hydroxysteroid dehydrogenase (1999) (151)
Systematic documentation and analysis of human genetic variation in hemoglobinopathies using the microattribution approach (2011) (150)
Comparative genome analysis delimits a chromosomal domain and identifies key regulatory elements in the α globin cluster (2001) (150)
ESPERR: learning strong and weak signals in genomic sequence alignments to identify functional elements. (2006) (143)
Complete mitochondrial genome of a Pleistocene jawbone unveils the origin of polar bear (2010) (142)
An initial strategy for the systematic identification of functional elements in the human genome by low-redundancy comparative sequencing. (2005) (135)
Regulatory potential scores from genome-wide three-way alignments of human, mouse, and rat. (2004) (133)
An O(NP) Sequence Comparison Algorithm (1990) (129)
Comparison of genomic DNA sequences: solved and unsolved problems (2001) (127)
Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration. (2011) (125)
Comparative sequence analysis of a gene-rich cluster at human chromosome 12p13 and its syntenic region in mouse chromosome 6. (1998) (124)
The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus). (2008) (123)
Sequence and comparative analysis of the mouse 1-megabase region orthologous to the human 11p15 imprinted domain. (2000) (122)
Comparison of five methods for finding conserved sequences in multiple alignments of gene regulatory regions. (1999) (121)
Comparison of the Escherichia coli K-12 genome with sampled genomes of a Klebsiella pneumoniae and three salmonella enterica serovars, Typhimurium, Typhi and Paratyphi. (2000) (120)
Dynamic programming algorithms for biological sequence comparison. (1992) (112)
Hox cluster genomics in the horn shark, Heterodontus francisci. (2000) (111)
Elephantid Genomes Reveal the Molecular Bases of Woolly Mammoth Adaptations to the Arctic. (2015) (105)
Mobile DNA in Old World Monkeys: A Glimpse Through the Rhesus Macaque Genome (2007) (105)
Comment on "Protein Sequences from Mastodon and Tyrannosaurus rex Revealed by Mass Spectrometry" (2008) (103)
Analysis of complete mitochondrial genomes from extinct and extant rhinoceroses reveals lack of phylogenetic resolution (2009) (101)
Generation and annotation of the DNA sequences of human chromosomes 2 and 4 (2005) (98)
The infinite sites model of genome evolution (2008) (96)
Alignment of Escherichia coli K12 DNA sequences to a genomic restriction map. (1990) (95)
Use of long sequence alignments to study the evolution and regulation of mammalian globin gene clusters. (1993) (93)
PhenCode: connecting ENCODE data with mutations and phenotype (2007) (93)
The Degrees of Hyperimmune Sets (1968) (91)
Comparative genomic sequence analysis of the human and mouse cystic fibrosis transmembrane conductance regulator genes. (2000) (89)
Finding cis-regulatory elements using comparative genomics: some lessons from ENCODE data. (2007) (88)
A Combinatorial Network of Evolutionarily Conserved Myelin Basic Protein Regulatory Sequences Confers Distinct Glial-Specific Phenotypes (2003) (88)
Multispecies comparative analysis of a mammalian-specific genomic domain encoding secretory proteins. (2003) (87)
Comparative genome analysis delimits a chromosomal domain and identifies key regulatory elements in the alpha globin cluster. (2001) (84)
Patterns of insertions and their covariation with substitutions in the rat, mouse, and human genomes. (2004) (84)
Conserved E Boxes Function as Part of the Enhancer in Hypersensitive Site 2 of the β-Globin Locus Control Region (1997) (79)
Comparison of Sequencing Platforms for Single Nucleotide Variant Calls in a Human Sample (2013) (79)
Genomic structure and functional control of the Dlx3-7 bigene cluster (2002) (77)
Mapping sequenced E.coli genes by computer: software, strategies and examples. (1991) (77)
Khoisan hunter-gatherers have been the largest population throughout most of modern-human demographic history (2014) (75)
EST clustering error evaluation and correction (2004) (75)
Comparative and population mitogenomic analyses of Madagascar's extinct, giant 'subfossil' lemurs. (2015) (74)
Sequence conservation at human and mouse orthologous common fragile regions, FRA3B/FHIT and Fra14A2/Fhit (2001) (73)
Gene length and proximity to neighbors affect genome-wide expression levels. (2003) (72)
Generation and Comparative Analysis of ∼3.3 Mb of Mouse Genomic Sequence Orthologous to the Region of Human Chromosome 7q11.23 Implicated in Williams Syndrome (2002) (71)
Genome-wide identification of conserved regulatory function in diverged sequences. (2011) (71)
Experimental validation of predicted mammalian erythroid cis-regulatory modules. (2006) (69)
Analysis of the quality and utility of random shotgun sequencing at low redundancies. (1998) (68)
Genomic sequence analysis of the mouse Naip gene array. (2000) (68)
Recent Developments in Linear-Space Alignment Methods: A Survey (1994) (67)
Response to Comment on "Whole-Genome Shotgun Sequencing of Mitochondria from Ancient Hair Shafts" (2008) (66)
DUPCAR: Reconstructing Contiguous Ancestral Regions with Duplications (2008) (65)
Comparative sequence of human and mouse BAC clones from the mnd2 region of chromosome 2p13. (1999) (64)
Levels of GATA-1/GATA-2 transcription factors modulate expression of embryonic and fetal hemoglobins. (2000) (64)
Use of subtractive hybridization for comprehensive surveys of prokaryotic genome differences. (2002) (60)
Aligning a DNA sequence with a protein sequence (1997) (58)
Computational complexity and numerical stability (1974) (58)
Human-macaque comparisons illuminate variation in neutral substitution rates (2008) (58)
Post-processing long pairwise alignments (1999) (58)
A Genome Sequence Resource for the Aye-Aye (Daubentonia madagascariensis), a Nocturnal Lemur from Madagascar (2011) (57)
Alignments without low-scoring regions (1998) (57)
Dancing with complement C4 and the RP-C4-CYP21-TNX (RCCX) modules of the major histocompatibility complex. (2003) (57)
Comparative genome sequence analysis of the Bpa/Str region in mouse and Man. (2000) (56)
Sequences Flanking Hypersensitive Sites of the β-Globin Locus Control Region Are Required for Synergistic Enhancement (2001) (56)
Role of DNA sequences outside the cores of DNase hypersensitive sites (HSs) in functions of the beta-globin locus control region. Domain opening and synergism between HS2 and HS3. (1996) (56)
Chaining multiple-alignment fragments in sub-quadratic time (1995) (56)
Generation and comparative analysis of approximately 3.3 Mb of mouse genomic sequence orthologous to the region of human chromosome 7q11.23 implicated in Williams syndrome. (2002) (55)
Progressive multiple alignment with constraints (1997) (53)
Comparative analysis of the gene-dense ACHE/TFR2 region on human chromosome 7q22 with the orthologous region on mouse chromosome 5. (2001) (53)
GALA, a database for genomic sequence alignments and annotations. (2003) (52)
A local alignment tool for very long DNA sequences (1995) (51)
Polar Bears Exhibit Genome-Wide Signatures of Bioenergetic Adaptation to Life in the Arctic Environment (2014) (51)
Optimization methods for selecting founder individuals for captive breeding or reintroduction of endangered species. (2010) (51)
Calling SNPs without a reference sequence (2010) (51)
Software for Roundoff Analysis (1975) (51)
The human and mouse MHC class III region: a parade of 21 genes at the centromeric segment. (2000) (48)
Software for Roundoff Analysis of Matrix Algorithms (1980) (48)
HbVar database for human hemoglobin variants and thalassemia mutations (2007) (46)
PipTools: a computational toolkit to annotate and analyze pairwise comparisons of genomic sequences. (2002) (45)
Association between divergence and interspersed repeats in mammalian noncoding genomic DNA (2001) (45)
Genome-wide analysis of signatures of selection in populations of African honey bees (Apis mellifera) using new web-based tools (2015) (43)
A Linear-Time Algorithm for the 1-Mismatch Problem (1997) (43)
Approximate matching of regular expressions (1989) (43)
Comparative sequence analysis of the mouse and human Lgn1/SMA interval. (1999) (41)
Electronic access to sequence alignments, experimental results, and human mutations as an aid to studying globin gene regulation. (1998) (41)
Giraffe genome sequence reveals clues to its unique morphology and physiology (2016) (40)
Sequence and comparative analysis of the rabbit alpha-like globin gene cluster reveals a rapid mode of evolution in a G + C-rich region of mammalian genomes. (1991) (40)
Aye-aye population genomic analyses highlight an important center of endemism in northern Madagascar (2013) (40)
Web-based visualization tools for bacterial genome alignments. (2000) (39)
Approximating the spanning star forest problem and its applications to genomic sequence alignment (2007) (38)
Software tools for analyzing pairwise alignments of long sequences. (1991) (38)
Comparative analysis of the locus control region of the rabbit β-like globin gene cluster: HS3 increases transient expression of an embryonic ε-globin gene (1993) (37)
Parallelization of a local similarity algorithm (1992) (37)
Locating well-conserved regions within a pairwise alignment (1993) (36)
Globin gene server: a prototype E-mail database server featuring extensive multiple alignments and data compilation for electronic genetic analysis. (1994) (36)
Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif. (2008) (35)
Analysis of conserved domains and sequence motifs in cellular regulatory proteins and locus control regions using new software tools for multiple alignment and visualization. (1992) (35)
Phylogenetic footprinting of hypersensitive site 3 of the beta-globin locus control region. (1997) (35)
The complete sequences of the galago and rabbit beta-globin locus control regions: extended sequence and functional conservation outside the cores of DNase hypersensitive sites. (1997) (34)
Identification of indels in next-generation sequencing data (2015) (34)
Computational reconstruction of ancestral DNA sequences. (2008) (33)
Comparative analysis of the alpha-like globin clusters in mouse, rat, and human chromosomes indicates a mechanism underlying breaks in conserved synteny. (2004) (32)
Building multiple alignments from pairwise alignments (1993) (32)
Chaining Multiple-Alignment Blocks (1994) (32)
Interpretation of custom designed Illumina genotype cluster plots for targeted association studies and next-generation sequence validation (2010) (30)
Sequencing and analysis of a South Asian-Indian personal genome (2012) (30)
Software for roundoff analysis, II (1978) (30)
EnteriX 2003: visualization tools for genome alignments of Enterobacteriaceae (2003) (28)
Erratum: Sequence and comparative analysis of the mouse 1-megabase region orthologous to the human 11p15 imprinted domain (Genome Reasearch (2000) vol. 10 (1697-1710)) (2001) (28)
Comparative genomic analysis using the UCSC genome browser. (2007) (28)
A tool for aligning very similar DNA sequences (1997) (28)
Multiple Regulatory Elements in the 5′-Flanking Sequence of the Human ε-Globin Gene* (1998) (27)
Genome Sequence Comparisons: Hurdles in the Fast Lane to Functional Genomics (2000) (26)
Divergent human and mouse orthologs of a novel gene (WBSCR15/Wbscr15) reside within the genomic interval commonly deleted in Williams syndrome (2000) (26)
Linear-space algorithms that build local alignments from fragments (1995) (25)
Galaxy tools to study genome diversity (2013) (25)
Sequences Within and Flanking Hypersensitive Sites 3 and 2 of the β-Globin Locus Control Region Required for Synergistic Versus Additive Interaction With the ε-globin Gene Promoter (1996) (25)
Genomic Variants Among Threatened Acropora Corals (2018) (25)
Positive and negative regulatory elements of the rabbit embryonic eglobin gene revealed by an improved multiple alignment program and functional analysis (1993) (24)
Row replacement algorithms for screen editors (1989) (23)
Candidate genes required for embryonic development: a comparative analysis of distal mouse chromosome 14 and human chromosome 13q22. (2002) (23)
Comparative genomics. (2004) (22)
So many genomes, so little time (2000) (22)
Quadratic convergence in interval arithmetic, part I (1972) (21)
Computer Search for Numerical Instability (1975) (21)
Recursive Function Theory and Numerical Analysis (1970) (20)
Role of DNA Sequences Outside the Cores of DNase Hypersensitive Sites (HSs) in Functions of the -Globin Locus Control Region (1996) (20)
A Negative Cis-element Regulates the Level of Enhancement by Hypersensitive Site 2 of the β-Globin Locus Control Region* (2001) (18)
Conversion events in gene clusters (2011) (17)
More on quadratic convergence in interval arithmetic (1973) (17)
A database of experimental results on globin gene expression. (1998) (17)
Complete Khoisan and Bantu genomes from southern (2010) (17)
Significance of Interspecies Matches when Evolutionary Rate Varies (2003) (16)
The mouse cornichon gene family (1999) (16)
STAGdb: a 30K SNP genotyping array and Science Gateway for Acropora corals and their dinoflagellate symbionts (2020) (15)
Reconstructing the Evolutionary History of Complex Human Gene Clusters (2008) (15)
An Effective Method for Detecting Gene Conversion Events in Whole Genomes (2010) (15)
Accumulation and functional architecture of deleterious genetic variants during the extinction of Wrangel Island Mammoths (2017) (14)
Evaluation of methods for detecting conversion events in gene clusters (2011) (14)
PipMaker: A World Wide Web Server for Genomic Sequence Alignments (2003) (14)
The 5' ends of LINE1 repeats in rabbit DNA define subfamilies and reveal a short sequence conserved between rabbits and humans. (1992) (14)
Proceedings of the seventh annual international conference on Research in computational molecular biology (2003) (14)
Phylogenomic resources at the UCSC Genome Browser. (2008) (13)
A point of contact between computer science and molecular biology (1994) (13)
Aligning two fragmented sequences (2002) (12)
Erratum: Genetic diversity and population structure of the endangered marsupial Sarcophilus harrisii (Tasmanian devil) (Proceedings of the National Academy of Sciences of the United States of America (2011) 108, 30 (12348-12353) DOI: 10.1073/pnas.1102838108) (2012) (12)
Graph Transformations for Roundoff Analysis (1976) (12)
Constructing Aligned Sequence Blocks (1994) (12)
MultiPipMaker: A Comparative Alignment Server for Multiple DNA Sequences (2010) (12)
Functional Architecture of Deleterious Genetic Variants in the Genome of a Wrangel Island Mammoth (2020) (12)
Functional and binding studies of HS3.2 of the beta-globin locus control region. (2002) (12)
Improvements to GALA and dbERGE II: databases featuring genomic sequence alignment, annotation and experimental results (2004) (12)
Parametric Recomuting in Alignment Graphs (1994) (11)
Roundoff Analysis by Direct Comparison of Two Algorithms (1976) (11)
Significance Of inter-species matches when evolutionary rate varies (2002) (11)
Revealing Mammalian Evolutionary Relationships by Comparative Analysis of Gene Clusters (2012) (11)
Winnowing sequences from a database search (1999) (11)
Improved algorithms for searching restriction maps (1991) (10)
Mouse Alignments with BLASTZ − Human (2003) (10)
CAGE: Combinatorial Analysis of Gene-Cluster Evolution (2010) (10)
Global predictions and tests of erythroid regulatory regions. (2003) (10)
A software tools sampler (1987) (10)
An algorithm for searching restriction maps (1990) (10)
Simultaneous History Reconstruction for Complex Gene Clusters in Multiple Species (2008) (9)
Toward mechanical verification of properties of roundoff error propagation (1973) (9)
MultiPipMaker: Comparative Alignment Server for Multiple DNA Sequences (2005) (9)
Genome-wide evidence for a hybrid origin of modern polar bears (2016) (8)
An Introduction to Bioinformatics Algorithms (2006) (8)
Elephantid genomes reveal the molecular bases of Woolly Mammoth adaptations to the arctic (2015) (8)
Comparative analysis of the locus control region of the rabbit beta-like gene cluster: HS3 increases transient expression of an embryonic epsilon-globin gene. (1993) (8)
Controlling Size When Aligning Multiple Genomic Sequences with Duplications (2006) (8)
Whole genome sequencing of California condors is now utilized for guiding genetic management (2016) (7)
Local Multiple Alignment Via Subgraph Enumeration (1996) (7)
On an interval-arithmetic matrix method (1972) (6)
4 – SOFTWARE FOR ROUNDOFF ANALYSIS (1980) (6)
Evolutionary History Reconstruction for Mammalian Complex Gene Clusters (2009) (6)
Validating Computer Programs for Functional Genomics in Gene Regulatory Regions (2000) (6)
Parametric Recomputing in Alignment Graphs (2005) (6)
An Introduction to Bioinformatics Algorithms. Neil C. Jones and Pavel A. Pevzner (2006) (5)
Algorithm 532: software for roundoff analysis [Z] (1978) (5)
Reducibility Among Floating-Point Graphs (1979) (5)
Constrained sequence alignment (1993) (5)
On the stability of finite numerical procedures (1972) (5)
Positive and negative regulatory elements of the rabbit embryonic epsilon-globin gene revealed by an improved multiple alignment program and functional analysis. (1993) (4)
Sequences within and flanking hypersensitive sites 3 and 2 of the beta-globin locus control region required for synergistic versus additive interaction with the epsilon-globin gene promoter. (1996) (4)
A simple row‐replacement method (1988) (4)
Toward Abstract Numerical Analysis (1973) (4)
Functional architecture of deleterious genetic variants in the Wrangel Island mammoth genome (2018) (4)
Inferring the Recent Duplication History of a Gene Cluster (2009) (3)
Whole-Genome Analysis of Gene Conversion Events (2009) (3)
Relaxed constraint and thermal desensitization of the cold-sensing ion channel TRPM8 in mammoths (2018) (3)
Recharacterization of ancient DNA miscoding lesions: Insights in the era of the GS20 (2008) (3)
A Heuristic Algorithm for Reconstructing Ancestral Gene Orders with Duplications (2007) (3)
Error analysis of a five-station P-wave location technique (1972) (3)
The Error in Interval Arithmetic (1975) (3)
A note on the instability of Gaussian elimination (1971) (3)
Side‐effects in Automatic File Updating (1986) (3)
Supporting California condor conservation management through analysis of species-wide whole genome sequence variation (2014) (3)
Quadratic convergence in interval arithmetic, part II (1972) (3)
Sex determination by SRY PCR and sequencing of Tasmanian devil facial tumour cell lines reveals non-allograft transmission. (2016) (2)
Using genomic data to unravel the root of the placental mammal data Supplementary (2007) (2)
Roundoff analyses and sparse data (1977) (2)
Aligning Two Genomic Sequences That Contain Duplications (2009) (2)
Some lessons from ENCODE data-regulatory elements using comparative genomics : cisFinding data (2007) (2)
Performing armchair roundoff analyses of statistical algorithms (1978) (2)
Software tools for pairwise sequence alignment (1997) (2)
Matrix Computations and Mathematical Software (John R. Rice) (1982) (1)
A database for globin gene expression data (1995) (1)
Sequencing and analysis of a South Asian-Indian personal genome (2012) (1)
Aye-aye population genomics: Signatures of natural selection (2013) (1)
Archeological Evidence of Parasitic Infection from the 19th Century Company Town of Fayette, Michigan (2000) (1)
1 Dynamics of the Epigenetic Landscape During Erythroid Differentiation after GATA 1 Restoration Running head : Chromatin state profiles precede gene regulation (2011) (1)
Optimization Methods for Selecting Founder Populations for Captive Breeding of Endangered Species (2010) (1)
Automatic a priori round-off analysis (1972) (1)
A note about computing all local alignments (1994) (1)
Detecting functional regions in dna with sequence comparison methods: program development and evaluation (2000) (1)
Review: John Cleave, The Primitive Recursive Analysis of Ordinary Differential Equations and the Complexity of their Solutions (1974) (1)
Author Correction: Comparative and demographic analysis of orang-utan genomes (2022) (1)
Sequence comparison with concave weighting functions (1988) (1)
The Genome 10K Project: A Way Forward Further (2015) (1)
Computational Challenges In Comparative Genomics: Gene Family Evolution, Ancestral Genome Reconstruction, And Applications To Human Genetics (2008) (1)
Remarks on the complexity of roundoff analysis (1974) (0)
Cleave John. The primitive recursive analysis of ordinary differential equations and the complexity of their solutions. Journal of computer and system sciences , vol. 3 (1969), pp. 447–455. (1974) (0)
5. Case Studies (2019) (0)
Computational pipeline for the empirical detection of cleaved targets of small silencing rnas using degradome sequencing data (2009) (0)
Validation of predicted erythroid cis-regulatory modules (2007) (0)
Narayanan large-scale analyses biologist-friendly A framework for collaborative analysis of ENCODE data : Making data (2007) (0)
Identification of indels in next-generation sequencing data (2015) (0)
Special RECOMB 2003 Issue (2004) (0)
Sequences flanking hypersensitive sites 2,3 and 4 the β-globin locus control region are required for the optimal function of the hypersensitive sites cores (2000) (0)
Sequencing of Mammoth DNA Metagenomics to Paleogenomics : Large-Scale (2007) (0)
A case for TOOLPACK (1979) (0)
motif sitestrongly associated with evolutionary constraint on the binding Transcriptional enhancement by GATA 1-occupied DNA segments is Material Supplemental (2008) (0)
Automating analysis of gene cluster evolution (2011) (0)
Ancient DNA genomics of Madagascar’s extinct subfossil lemurs: Palaeopropithecus ingens genetic diversity (2013) (0)
3 – DIRECTED GRAPHS (1980) (0)
Parallelizing and Analyzing the Behavior of Sequence Alignment Algorithm on a Cluster of Workstations for Large Datasets (2015) (0)
RECOMB 2003 : proceedings of the seventh Annual International Conference on Research in Computational Molecular Biology, April 10-13, 2003, Berlin, Germany (2003) (0)
Correction (2020) (0)
Aye-aye demography and conservation genomics (2012) (0)
SOME ELEMENTS OF ERROR ANALYSIS (1980) (0)
genome by low-redundancy comparative sequencing An initial strategy for the systematic identification of functional elements in the human Mullikin (2005) (0)
49Comparative genomics to find function in noncoding DNA (2007) (0)
by Electron Diffraction 4 D Visualization of Transitional Structures in Phase Transformations (2013) (0)
CONCEPTS FROM LINEAR ALGEBRA AND ANALYSIS (1980) (0)
silico Reconstructing large regions of an ancestral mammalian genome in data (2004) (0)
Browser 28-Way vertebrate alignment and conservation track in the UCSC data (2007) (0)
Venn diagram showing the overlap in the SNP calls made using data from the three sequencing technologies. (2013) (0)
My adventure using computer science on the Genome project (1999) (0)
Functional genomics of the beta-globin gene cluster reveals novel regulatory elements in the locus control region (1999) (0)
Alignment-to-Alignment Editing with "Move Gap" Operations (1996) (0)
Aligner Aligning Multiple Genomic Sequences With the Threaded Blockset data (2004) (0)
The Use of Genetic Databases in Population Screening Programs for Hemoglobinopathies (2016) (0)
Algorithms for locating conserved regions in alignments (1997) (0)
Sequential and parallel algorithms for local sequence similarities (1990) (0)
Some Phenotype Association Tools in Galaxy: Looking for Disease SNPs in a Full Genome (2012) (0)
Title Elephantid Genomes Reveal the Molecular Bases ofWoolly Mammoth Adaptations to the Arctic (2018) (0)
Genome-wide analysis of signatures of selection in populations of African honey bees (Apis mellifera) using new web-based tools (2015) (0)
differentiation after GATA 1 restoration Dynamics of the epigenetic landscape during erythroid Material (2011) (0)
alignments to identify functional elements ESPERR: Learning strong and weak signals in genomic sequence (2006) (0)
Thylacinus cynocephalus The mitochondrial genome sequence of the Tasmanian tiger ( Material Supplemental (2009) (0)
COMPUTATIONAL CHALLENGES IN COMPARATIVE GENOMICS – Session Introduction (2009) (0)

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