Wing Hung Wong

Q: What Schools Are Affiliated With Wing Hung Wong

Wing Hung Wong is affiliated with the following schools: University of California, Berkeley, University of Leeds, Chinese University of Hong Kong, University of California, Los Angeles, University of Wisconsin–Madison, Stanford University, University of Chicago, University of Manchester, Harvard University

Wing Hung Wong's AcademicInfluence.com Rankings

Wing Hung Wong

Mathematics

#2270

World Rank

#3537

Historical Rank

#904

USA Rank

Statistics

#104

World Rank

#138

Historical Rank

#48

USA Rank

mathematics Degrees

Wing Hung Wong

Biology

#3655

World Rank

#5554

Historical Rank

#1465

USA Rank

Computational Biology

#59

World Rank

#59

Historical Rank

#19

USA Rank

biology Degrees

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Mathematics
Biology

Wing Hung Wong's Degrees

PhD Statistics University of California, Berkeley
Masters Statistics University of California, Berkeley
Bachelors Mathematics University of California, Berkeley

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Why Is Wing Hung Wong Influential?

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According to Wikipedia, Wing Hung Wong is a Chinese-American statistician, computational biologist, and Stanford University professor. Biography Wong graduated from the University of California, Berkeley in 1976 with a bachelor's degree. At the University of Wisconsin–Madison, he studied under renowned statistician Grace Wahba, and was awarded a PhD in Statistics in 1980. After graduation, he taught at the University of Chicago, served as an assistant professor, associate professor, and professor. In 1994 he joined the Chinese University of Hong Kong Department of Statistics. Since 1997, he taught and led his lab at the University of California, Los Angeles and Harvard University. In 2004, he was appointed Professor at Stanford University, and served as Head of the Department of Statistics at Stanford University in 2009. As of 2020, he is Professor of Statistics and Biomedical Data Science at Stanford.

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Wing Hung Wong's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

The calculation of posterior distributions by data augmentation (1987) (4385)
Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. (2001) (3405)
An integrated encyclopedia of DNA elements in the human genome (2012) (2080)
Genome-wide expression analysis reveals dysregulation of myelination-related genes in chronic schizophrenia (2001) (1197)
Sequential Imputations and Bayesian Missing Data Problems (1994) (1164)
SIMULATING RATIOS OF NORMALIZING CONSTANTS VIA A SIMPLE IDENTITY: A THEORETICAL EXPLORATION (1996) (785)
Covariance structure of the Gibbs sampler with applications to the comparisons of estimators and augmentation schemes (1994) (642)
Statistical inferences for isoform expression in RNA-Seq (2009) (482)
SeqMap: mapping massive amount of oligonucleotides to the genome (2008) (473)
SMAD4-dependent barrier constrains prostate cancer growth and metastatic progression (2011) (471)
On ψ-Learning (2003) (436)
dChipSNP: significance curve and clustering of SNP-array-based loss-of-heterozygosity data (2004) (412)
The Multiple-Try Method and Local Optimization in Metropolis Sampling (2000) (399)
Convergence Rate of Sieve Estimates (1994) (372)
Detection of splice junctions from paired-end RNA-seq data by SpliceMap (2010) (354)
Transitive functional annotation by shortest-path analysis of gene expression data (2002) (353)
ChIP-Seq of transcription factors predicts absolute and differential gene expression in embryonic stem cells (2009) (344)
Profile Likelihood and Conditionally Parametric Models (1992) (328)
Novel mechanisms of T-cell and dendritic cell activation revealed by profiling of psoriasis on the 63,100-element oligonucleotide array. (2003) (322)
A genome-scale analysis of the cis-regulatory circuitry underlying sonic hedgehog-mediated patterning of the mammalian limb. (2008) (320)
Recursive SVM feature selection and sample classification for mass-spectrometry and microarray data (2006) (313)
Activation of Innate Immunity Is Required for Efficient Nuclear Reprogramming (2012) (312)
Expression profiling of serous low malignant potential, low-grade, and high-grade tumors of the ovary. (2005) (310)
An integrated system CisGenome for analyzing ChIP-chip and ChIP-seq data (2008) (308)
Probability inequalities for likelihood ratios and convergence rates of sieve MLEs (1995) (308)
Genomic characterization of Gli-activator targets in sonic hedgehog-mediated neural patterning (2007) (294)
Improving PacBio Long Read Accuracy by Short Read Alignment (2012) (291)
Characterization of the human ESC transcriptome by hybrid sequencing (2013) (291)
A gene regulatory network in mouse embryonic stem cells (2007) (288)
Feature extraction and normalization algorithms for high‐density oligonucleotide gene expression array data (2001) (281)
TileMap: create chromosomal map of tiling array hybridizations (2005) (264)
CisModule: de novo discovery of cis-regulatory modules by hierarchical mixture modeling. (2004) (249)
Insights into the multistep transformation of MGUS to myeloma using microarray expression analysis. (2003) (244)
Tight Clustering: A Resampling‐Based Approach for Identifying Stable and Tight Patterns in Data (2005) (241)
Molecular diversity of astrocytes with implications for neurological disorders. (2004) (230)
DNA-Chip Analyzer (dChip) (2003) (228)
A gene signature predictive for outcome in advanced ovarian cancer identifies a survival factor: microfibril-associated glycoprotein 2. (2009) (228)
The Estimation of the Hazard Function from Randomly Censored Data by the Kernel Method (1983) (222)
Six2 and Wnt regulate self-renewal and commitment of nephron progenitors through shared gene regulatory networks. (2012) (220)
Real-Parameter Evolutionary Monte Carlo With Applications to Bayesian Mixture Models (2001) (217)
Analyzing high‐density oligonucleotide gene expression array data (2001) (214)
Modeling non-uniformity in short-read rates in RNA-Seq data (2010) (214)
Evolutionary Monte Carlo for protein folding simulations (2001) (192)
Learning Causal Bayesian Network Structures From Experimental Data (2008) (189)
Theory of Partial Likelihood (1986) (183)
Inferring Loss-of-Heterozygosity from Unpaired Tumors Using High-Density Oligonucleotide SNP Arrays (2006) (177)
Covariance Structure and Convergence Rate of the Gibbs Sampler with Various Scans (1995) (176)
Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis (2017) (175)
Functional annotation and network reconstruction through cross-platform integration of microarray data (2005) (173)
Equi-energy sampler with applications in statistical inference and statistical mechanics (2005) (166)
Neural-specific Sox2 input and differential Gli-binding affinity provide context and positional information in Shh-directed neural patterning. (2012) (161)
The primate-specific noncoding RNA HPAT5 regulates pluripotency during human preimplantation development and nuclear reprogramming (2015) (149)
Rejection Control and Sequential Importance Sampling (1998) (142)
RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development (2012) (140)
Exon arrays provide accurate assessments of gene expression (2007) (127)
Modeling gene regulation from paired expression and chromatin accessibility data (2017) (126)
CRISPR Activation Screens Systematically Identify Factors that Drive Neuronal Fate and Reprogramming. (2018) (125)
Hedgehog pathway-regulated gene networks in cerebellum development and tumorigenesis (2010) (121)
GoSurfer: a graphical interactive tool for comparative analysis of large gene sets in Gene Ontology space. (2004) (121)
MetaSV: an accurate and integrative structural-variant caller for next generation sequencing (2015) (117)
Human transcriptome array for high-throughput clinical studies (2011) (115)
A Novel and Critical Role for Oct4 as a Regulator of the Maternal-Embryonic Transition (2008) (113)
Learning Summary Statistic for Approximate Bayesian Computation via Deep Neural Network (2015) (112)
Integrative analysis of single-cell genomics data by coupled nonnegative matrix factorizations (2018) (108)
ChipInfo: software for extracting gene annotation and gene ontology information for microarray analysis (2003) (105)
MADS: a new and improved method for analysis of differential alternative splicing by exon-tiling microarrays. (2008) (104)
CancerDetector: ultrasensitive and non-invasive cancer detection at the resolution of individual reads using cell-free DNA methylation sequencing data (2018) (104)
Human tRNA synthetase catalytic nulls with diverse functions (2014) (103)
EVOLUTIONARY MONTE CARLO: APPLICATIONS TO Cp MODEL SAMPLING AND CHANGE POINT PROBLEM (2000) (99)
Characterization of fusion genes and the significantly expressed fusion isoforms in breast cancer by hybrid sequencing (2015) (91)
Completely phased genome sequencing through chromosome sorting (2010) (91)
Recombinatoric exploration of novel folded structures: A heteropolymer-based model of protein evolutionary landscapes (2002) (91)
Dynamic weighting in Monte Carlo and optimization. (1997) (90)
Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases (2013) (90)
Statistical Modeling of RNA-Seq Data. (2011) (90)
A Small-Molecule Inhibitor of Mps1 Blocks the Spindle-Checkpoint Response to a Lack of Tension on Mitotic Chromosomes (2005) (89)
Bayesian Analysis in Applications of Hierarchical Models: Issues and Methods (1996) (86)
QuatNet: Quaternion-Based Head Pose Estimation With Multiregression Loss (2019) (86)
Unsupervised clustering and epigenetic classification of single cells (2017) (85)
Data-Based Nonparametric Estimation of the Hazard Function with Applications to Model Diagnostics and Exploratory Analysis (1984) (85)
An ensemble approach to accurately detect somatic mutations using SomaticSeq (2015) (81)
Identification of genes regulated by 2-methoxyestradiol (2ME2) in multiple myeloma cells using oligonucleotide arrays. (2003) (81)
Early role for IL-6 signalling during generation of induced pluripotent stem cells revealed by heterokaryon RNA-Seq (2013) (79)
Probe Selection and Expression Index Computation of Affymetrix Exon Arrays (2006) (73)
A comparative analysis of genome-wide chromatin immunoprecipitation data for mammalian transcription factors (2006) (70)
A boosting approach for motif modeling using ChIP-chip data (2005) (70)
On Maximum Likelihood Estimation in Infinite-Dimensional Parameter Spaces (1991) (70)
Coupling Optional Pólya Trees and the Two Sample Problem (2010) (69)
Analysis of factorial time-course microarrays with application to a clinical study of burn injury (2010) (67)
DeepTACT: predicting 3D chromatin contacts via bootstrapping deep learning (2019) (67)
Role of Epidermal Growth Factor Receptor Signaling in RAS-Driven Melanoma (2005) (66)
Identifiability of isoform deconvolution from junction arrays and RNA-Seq (2009) (66)
On the Consistency of Cross-Validation in Kernel Nonparametric Regression (1983) (63)
Multivariate Density Estimation by Bayesian Sequential Partitioning (2013) (63)
TFAP2C- and p63-Dependent Networks Sequentially Rearrange Chromatin Landscapes to Drive Human Epidermal Lineage Commitment. (2019) (62)
Comprehensive, integrated, and phased whole-genome analysis of the primary ENCODE cell line K562 (2017) (60)
VarSim: a high-fidelity simulation and validation framework for high-throughput genome sequencing with cancer applications (2014) (59)
Sampling motifs on phylogenetic trees. (2005) (59)
Fast and accurate read alignment for resequencing (2012) (58)
Assessing the conservation of mammalian gene expression using high-density exon arrays. (2007) (57)
Optional P\'{o}lya tree and Bayesian inference (2010) (57)
Detecting DNA Modifications from SMRT Sequencing Data by Modeling Sequence Context Dependence of Polymerase Kinetic (2013) (55)
An Oct4-Sall4-Nanog network controls developmental progression in the pre-implantation mouse embryo (2013) (54)
Stable 5‐Hydroxymethylcytosine (5hmC) Acquisition Marks Gene Activation During Chondrogenic Differentiation (2016) (48)
Reliable prediction of transcription factor binding sites by phylogenetic verification. (2005) (47)
Using CisGenome to Analyze ChIP‐chip and ChIP‐seq Data (2011) (47)
Determination of Local Statistical Significance of Patterns in Markov Sequences with Application to Promoter Element Identification (2004) (47)
Detect and adjust for population stratification in population-based association study using genomic control markers: an application of Affymetrix Genechip® Human Mapping 10K array (2004) (46)
Density estimation using deep generative neural networks (2021) (46)
Array comparative genome hybridization for tumor classification and gene discovery in mouse models of malignant melanoma. (2003) (46)
A Theory for Dynamic Weighting in Monte Carlo Computation (2001) (46)
A Hardware-Efficient Sigmoid Function With Adjustable Precision for a Neural Network System (2015) (46)
Xrare: a machine learning method jointly modeling phenotypes and genetic evidence for rare disease diagnosis (2019) (44)
Comparative analysis of gene sets in the gene ontology space under the multiple hypothesis testing framework (2004) (42)
DC3 is a method for deconvolution and coupled clustering from bulk and single-cell genomics data (2019) (42)
An application of imputation to an estimation problem in grouped lifetime analysis (1987) (42)
Gene expression profiles of human inner cell mass cells and embryonic stem cells. (2009) (40)
CisGenome Browser: a flexible tool for genomic data visualization (2010) (40)
Molecular classification of liver cirrhosis in a rat model by proteomics and bioinformatics (2004) (40)
Cross-hybridization modeling on Affymetrix exon arrays (2008) (40)
Computational Biology: Toward Deciphering Gene Regulatory Information in Mammalian Genomes (2006) (39)
Deep phenotyping to predict live birth outcomes in in vitro fertilization (2010) (39)
Integrated functional genomic analyses of Klinefelter and Turner syndromes reveal global network effects of altered X chromosome dosage (2020) (39)
Personalized prediction of first-cycle in vitro fertilization success. (2013) (39)
From EM to Data Augmentation: The Emergence of MCMC Bayesian Computation in the 1980s (2010) (38)
Simultaneous dimension reduction and adjustment for confounding variation (2016) (37)
Simultaneous deep generative modelling and clustering of single-cell genomic data (2020) (37)
Model-based analysis of oligonucleotide arrays and issues in cDNA microarray analysis (2003) (36)
Identification of DNA copy number changes in microdissected serous ovarian cancer tissue using a cDNA microarray platform. (2004) (35)
Chromatin accessibility landscape and regulatory network of high-altitude hypoxia adaptation (2020) (33)
Automatic Bayesian model averaging for linear regression and applications in Bayesian curve fitting (2001) (33)
Laplace expansion for posterior densities of nonlinear functions of parameters (1992) (33)
Haplotype-resolved and integrated genome analysis of the cancer cell line HepG2 (2019) (33)
De novo discovery of a tissue-specific gene regulatory module in a chordate. (2005) (33)
Defining Human Embryo Phenotypes by Cohort-Specific Prognostic Factors (2008) (32)
Comparative linkage analysis and visualization of high-density oligonucleotide SNP array data (2005) (31)
Modeling Co-Expression across Species for Complex Traits: Insights to the Difference of Human and Mouse Embryonic Stem Cells (2010) (30)
Diabetic Retinopathy Detection Based on Deep Convolutional Neural Networks (2018) (30)
An improved distance measure between the expression profiles linking co-expression and co-regulation in mouse (2006) (28)
CRISPhieRmix: a hierarchical mixture model for CRISPR pooled screens (2018) (27)
scJoint integrates atlas-scale single-cell RNA-seq and ATAC-seq data with transfer learning (2022) (27)
Random Sieve Likelihood and General Regression Models (1999) (26)
The analysis of ChIP-Seq data. (2011) (26)
Geometric Understanding of Likelihood Ratio Statistics (1998) (26)
Coupling Hidden Markov Models for the Discovery of Cis-Regulatory Modules in Multiple Species (2007) (25)
Reconfigurable computing for learning Bayesian networks (2008) (25)
A study of density of states and ground states in hydrophobic-hydrophilic protein folding models by equi-energy sampling. (2006) (25)
Simultaneous Isoform Discovery and Quantification from RNA-Seq (2013) (24)
Recursive Sample Classification and Gene Selection based on SVM: Method and Software Description # (2001) (24)
Density Estimation via Discrepancy Based Adaptive Sequential Partition (2014) (23)
Learning regulatory programs by threshold SVD regression (2014) (23)
Nested epistasis enhancer networks for robust genome regulation (2022) (23)
Dynamic chromatin regulatory landscape of human CAR T cell exhaustion (2021) (23)
A New FACS Approach Isolates hESC Derived Endoderm Using Transcription Factors (2011) (23)
A BOOTSTRAP-BASED NON-PARAMETRIC ANOVA METHOD WITH APPLICATIONS TO FACTORIAL MICROARRAY DATA (2011) (22)
A Note on the Modified Likelihood for Density Estimation (1983) (21)
A 41.3/26.7 pJ per Neuron Weight RBM Processor Supporting On-Chip Learning/Inference for IoT Applications (2017) (20)
Early role for IL6 signaling in iPS generation revealed by heterokaryon RNA-Seq (2013) (20)
Using high-density exon arrays to profile gene expression in closely related species (2009) (19)
An Oct 4-Sall 4-Nanog network controls developmental progression in the preimplantation mouse embryo (2013) (18)
Dissecting Early Differentially Expressed Genes in a Mixture of Differentiating Embryonic Stem Cells (2009) (18)
Computational Developments of ψ-learning (2005) (18)
On constrained multivariate splines and their approximations (1984) (18)
Modeling the spatio-temporal network that drives patterning in the vertebrate central nervous system. (2009) (18)
Time course regulatory analysis based on paired expression and chromatin accessibility data (2020) (18)
Challenges and recommendations for epigenomics in precision health (2017) (17)
Reconstructing the Energy Landscape of a Distribution from Monte Carlo Samples (2008) (17)
The Calculation of Posterior Distributions by MARTIN A . TANNER and (2007) (17)
Relaxed simulated tempering for VLSI floorplan designs (1999) (17)
Learning a nonlinear dynamical system model of gene regulation: A perturbed steady-state approach (2012) (16)
Modeling stochastic noise in gene regulatory systems (2014) (15)
Modeling the causal regulatory network by integrating chromatin accessibility and transcriptome data. (2016) (15)
An “almost exhaustive” search‐based sequential permutation method for detecting epistasis in disease association studies (2010) (15)
Model-Based Approach to the Joint Analysis of Single-Cell Data on Chromatin Accessibility and Gene Expression (2020) (15)
ParaLearn: a massively parallel, scalable system for learning interaction networks on FPGAs (2010) (15)
Predicting personalized multiple birth risks after in vitro fertilization-double embryo transfer. (2012) (14)
Leveraging long read sequencing from a single individual to provide a comprehensive resource for benchmarking variant calling methods (2015) (14)
Network Effects of the 15q13.3 Microdeletion on the Transcriptome and Epigenome in Human-Induced Neurons (2020) (13)
A method for scoring the cell type-specific impacts of noncoding variants in personal genomes (2020) (13)
Comment [on "Smooth pycnophylactic interpolation for geographical regions"]. (1979) (13)
Energy landscape of a spin-glass model: exploration and characterization. (2009) (13)
GeneNotes – A novel information management software for biologists (2005) (12)
Modeling regulatory network topology improves genome-wide analyses of complex human traits (2020) (12)
Integrated analysis of microarray data and gene function information. (2004) (12)
MULTIVARIATE DENSITY ESTIMATION BASED ON ADAPTIVE PARTITIONING: CONVERGENCE RATE, VARIABLE SELECTION AND SPATIAL ADAPTATION (2014) (11)
Predicting transcription factor binding motifs from DNA-binding domains, chromatin accessibility and gene expression data (2017) (11)
Simultaneous inference of phenotype-associated genes and relevant tissues from GWAS data via Bayesian integration of multiple tissue-specific gene networks (2017) (10)
DDUNet: Dense Dense U-Net with Applications in Image Denoising (2021) (10)
Convergence of contrastive divergence algorithm in exponential family (2016) (9)
Sensitive detection of tumor mutations from blood and its application to immunotherapy prognosis (2020) (9)
Sc-compReg enables the comparison of gene regulatory networks between conditions using single-cell data (2021) (9)
On the characterization of non-negative volume-matching surface splines (1987) (9)
Scalable multi-sample single-cell data analysis by Partition-Assisted Clustering and Multiple Alignments of Networks (2017) (9)
Computational Aspects of Optional Pólya Tree (2013) (9)
A unique secreted adenovirus E 3 protein binds to the leukocyte common antigen CD 45 and modulates leukocyte functions (2013) (8)
Evolutionary Monte Carlo Methods for Clustering (2007) (8)
Density Estimation via Adaptive Partition and Discrepancy Control (2014) (8)
Detection of complex structural variation from paired-end sequencing data (2017) (8)
Extensive and deep sequencing of the Venter/HuRef genome for developing and benchmarking genome analysis tools (2018) (8)
scJoint: transfer learning for data integration of single-cell RNA-seq and ATAC-seq (2021) (7)
Confnet: Predict with Confidence (2018) (7)
Density estimation on multivariate censored data with optional Pólya tree. (2014) (7)
Regulatory analysis of single cell multiome gene expression and chromatin accessibility data with scREG (2022) (7)
Multivariate Density Estimation via Adaptive Partitioning (I): Sieve MLE (2014) (6)
Convergence rates of a partition based Bayesian multivariate density estimation method (2017) (6)
Multivariate Density Estimation via Adaptive Partitioning (II): Posterior Concentration (2015) (6)
Feature Consistency Training With JPEG Compressed Images (2020) (6)
Dynamic weighting in simulations of spin systems (1999) (6)
Mini-Batch Metropolis–Hastings With Reversible SGLD Proposal (2019) (6)
Cost-effective methylome sequencing of cell-free DNA for accurately detecting and locating cancer (2022) (5)
Dynamic weighting Monte Carlo for constrained floorplan designs in mixed signal application (2000) (5)
DeepTACT: predicting high-resolution chromatin contacts via bootstrapping deep learning (2018) (5)
R.R. Bahadur's lectures on the theory of estimation (2002) (5)
A Sparse Transmission Disequilibrium Test for Haplotypes Based on Bradley-Terry Graphs (2012) (5)
Weighted markov chain monte carlo and optimization (1997) (5)
Methodnon-uniformity in short-read rates in RNA-Seq data (2010) (5)
hReg-CNCC reconstructs a regulatory network in human cranial neural crest cells and annotates variants in a developmental context (2021) (5)
Integrative analysis of single cell genomics data by coupled nonnegative matrix factorizations (2018) (5)
Estimation Of The Loss Of An Estimate (2005) (4)
Leveraging cell-type-specific regulatory networks to interpret genetic variants in abdominal aortic aneurysm (2021) (4)
Network effects of the neuropsychiatric 15q13.3 microdeletion on the transcriptome and epigenome in human induced neurons (2019) (4)
A Reanalysis of the Standford Heart Transplant Data: Comment (1983) (4)
The properties of the cross-match estimate and split sampling (1997) (4)
A method for tight clustering: with application to microarray (2003) (4)
Abstract 24: Multi-feature ensemble learning on cell-free dna for accurately detecting and locating cancer (2021) (4)
Mini-batch Tempered MCMC (2017) (4)
Rejoinder to "Equi-energy sampler with applications in statistical inference and statistical mechanics" (2006) (3)
COSINE: non-seeding method for mapping long noisy sequences (2017) (3)
Towards ubiquitous bio-information computing: data protocols, middleware, and Web services for heterogeneous biological information integration and retrieval (2004) (3)
co-BPM: a Bayesian Model for Estimating Divergence and Distance of Distributions (2014) (3)
On Profile Likelihood: Comment (2000) (3)
Correlation-Based Face Detection for Recognizing Faces in Videos (2018) (3)
DeepCAGE: Incorporating Transcription Factors in Genome-wide Prediction of Chromatin Accessibility (2019) (2)
Inferring Loss-of-Heterozygosity From Tumor-only Samples Using High-Density Oligonucleotide SNP Arrays (2)
Haplotype-resolved and integrated genome analysis of ENCODE cell line HepG2 (2018) (2)
Discovering and Visualizing Hierarchy in Multivariate Data (2014) (2)
Roundtrip: A Deep Generative Neural Density Estimator (2020) (2)
A 7.11mJ/Gb/query data-driven machine learning processor (D2MLP) for big data analysis and applications (2014) (2)
Erratum: Molecular diversity of astrocytes with implications for neurological disorders (Proceedings of the National Academy of Sciencs of the United States of America (June 1, 2004) 101, 22 (8384-8389)) (2004) (1)
An integral equation for the identification of causal effects in nonlinear models (2021) (1)
Discovering and Visualizing Hierarchy in the Data (2014) (1)
Datasets: density estimation using deep generative neural network (2020) (1)
Incorporating Gene Expression in Genome-wide Prediction of Chromatin Accessibility via Deep Learning (2019) (1)
Complete and haplotype-specific sequence assembly of segmental duplication-mediated genome rearrangements using CRISPR-targeted ultra-long read sequencing (CTLR-Seq) (2020) (1)
CausalEGM: a general causal inference framework by encoding generative modeling (2022) (1)
A calculus for causal inference with instrumental variables (2021) (1)
HiChIPdb: a comprehensive database of HiChIP regulatory interactions (2022) (1)
Feedback Regulation between Initiation and Maturation Networks Orchestrates the Chromatin Dynamics of Epidermal Lineage Commitment (2018) (1)
Coupled Generation (2021) (1)
Learning a nonlinear gene regulation model from perturbed steady-state data (2012) (1)
LMO2 Regulates Angiogenesis through TGFB1 and HGF (2015) (1)
A 41.3pJ/26.7pJ per neuron weight RBM processor for on-chip learning/inference applications (2016) (1)
Deterministic evolution and stringent selection during pre-neoplasia (2023) (1)
Genetic effects of sequence-conserved enhancer-like elements on human complex traits (2022) (1)
Unfolding the genotype-to-phenotype black box of cardiovascular diseases through cross-scale modeling (2022) (1)
Collaborative multilabel classification (2021) (1)
Identification of a gene signature that can predict lone-term survival in patients with high-grade late stage serous ovarian cancer (2005) (1)
CRISPhieRmix: a hierarchical mixture model for CRISPR pooled screens (2018) (1)
One-dimensional phase retrieval: regularization, box relaxation and uniqueness (2019) (1)
Phased Genome Sequencing Through Chromosome Sorting. (2017) (1)
Phase Retrieval for Binary Signals: Box Relaxation and Uniqueness (2019) (1)
Author Correction: Regulatory analysis of single cell multiome gene expression and chromatin accessibility data with scREG (2022) (1)
Tyrosine kinase inhibitors induce mitochondrial dysfunction during cardiomyocyte differentiation through alteration of GATA4-mediated networks (2020) (1)
oligonucleotide array revealed by profiling of psoriasis on the 63,100-element Novel mechanisms of T-cell and dendritic cell activation (2016) (0)
Convergence of Contrastive Divergence with Annealed Learning Rate in Exponential Family (2016) (0)
Embryonic stem cell (ESC) pluripotency regulators have novel and critical roles in pre-blastocyst development (2008) (0)
81 INTEGRATED ANALYSIS OF GENE EXPRESSION, DNA METHYLATION AND CHROMATIN ACCESSIBILITY IN A HUMAN IPSC-TO-INDUCED-NEURON MODEL OF THE 15Q13.3 MICRODELETION (2019) (0)
Density estimation on multivariate censored data with (2013) (0)
Automatic detection of complex structural genome variation across world populations (2023) (0)
ACCURATE CONSTRUCTION OF LONG RANGE HAPLOTYPE IN UNRELATED INDIVIDUALS (2014) (0)
Heritability enrichment in context-specific regulatory networks improves phenotype-relevant tissue identification (2022) (0)
Analysis on the Projective Octagasket (2018) (0)
Revealing Free Energy Landscape from MD Data via Conditional Angle Partition Tree (2021) (0)
On the identifiability of the isoform deconvolution problem: application to select the proper fragment length in an RNA-seq library (2022) (0)
NeuronMotif: Deciphering transcriptional cis-regulatory codes from deep neural networks (2021) (0)
NeuronMotif: Deciphering cis-regulatory codes by layer-wise demixing of deep neural networks (2023) (0)
Interpreting ruminant specific conserved non-coding elements by developmental gene regulatory network (2021) (0)
A tale of two morphogen gradients: Identifying Gli targets of Hedgehog Signaling (2006) (0)
Direct induction of human neurons from fibroblasts carrying the neuropsychiatric 22q11.2 microdeletion reveals transcriptome- and epigenome-wide alterations (2021) (0)
T18. DETECTION OF COMPLEX STRUCTURAL GENOME VARIANTS USING ARC-SV AND THEIR ENRICHMENT INSIDE GENES OF NEURODEVELOPMENTAL PATHWAYS (2022) (0)
transcriptome over development Xenopus tropicalis RNA sequencing reveals diverse and dynamic repertoire of the (2012) (0)
In silico prediction of transcription factors that interact with the E2F family of transcription factors (2004) (0)
Abstract LB-306: An ensemble approach to accurately detect somatic mutations via adaptive boosting (2015) (0)
hReg-CNCC reconstructs a regulatory network in human cranial neural crest cells and annotates variants in a developmental context (2021) (0)
Infertility and Environment (1996) (0)
Genomic analysis of endoderm transcription in Xenopus (2006) (0)
MIMIC: an optimization method to identify cell type-specific marker panel for cell sorting (2021) (0)
Meta-analysis of peptides to detect protein significance. (2020) (0)
Foreword (2019) (0)
Mandarin Translations (2011) (0)
Perceptually induced speech motor representations (2017) (0)
Current and future perspectives of single-cell multi-omics technologies in cardiovascular research (2023) (0)
VarSim: a simulation validation framework for alignment and variant calling in high-throughput genome sequencing (2014) (0)
Simultaneous Isoform Discovery and Quantification from RNA-Seq (2012) (0)
ANALYZING THE MOLECULAR NETWORK EFFECTS OF LARGE NEUROPSYCHIATRIC CNVS WITH IPSC BASED NEURONAL TISSUE CULTURE MODELS (2019) (0)
MetaSV: an accurate method-aware merging algorithm for structural variations (2014) (0)
Inferring Loss-of-Heterozygosity from Tumors Without Paired Normals Using High-Density SNP Arrays (2005) (0)
S96SMALL-SCALE SOMATIC STRUCTURAL VARIANTS IN FETAL AND ADULT HUMAN BRAINS (2019) (0)
Comment (2000) (0)
AC-PCA: simultaneous dimension reduction and adjustment for confounding variation (2016) (0)
co-BPM: a Bayesian Model for Divergence Estimation (2014) (0)
Low-level analysis of oligonucleotide expression arrays (2005) (0)
Personalized prediction of live birth outcomes in IVF (2010) (0)
Regulatory analysis of single cell multiome gene expression and chromatin accessibility data with scREG (2022) (0)
Blind Separation and Deconvolution : Contributions to Aggregated Time Series Analysis and Signal Processing (1999) (0)
DISCUSSION OF “EQUI-ENERGY SAMPLER ” BY KOU, (2006) (0)
AC-PCA adjusts for confounding variation in transcriptome data and recovers the anatomical structure of neocortex (2016) (0)
A 1.86mJ/Gb/query bit-plane payload machine learning processor in 90nm CMOS (2018) (0)
AND CONVERGENCE RATES OF SIEVE MLES (2016) (0)
Nonparametric hazard estimation with time-varying discrete covariates (1990) (0)
On the Solution of a Constrained Minimization Problem in H'Omega Related to Density Estimation. (1981) (0)
Title Geometric understanding of likelihood ratio statistics Permalink (1999) (0)
Towards high performance data analytic on heterogeneous many-core systems: A study on Bayesian Sequential Partitioning (2018) (0)
Dynamic Weighting In Markov Chain Monte (1998) (0)
Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis (2017) (0)
ANALYSIS OF CATEGORICAL DATA WITH MISCLASSIFICATION ERRORS by CHUN- (2015) (0)
data to detect putative modifications to DNA bases Modeling kinetic rate variation in third generation DNA sequencing (2012) (0)
Progress and lessons in the analysis of microarray data (2002) (0)
Abstract 363: Toll-Like Receptor 3 Activation Promotes Efficient Nuclear Reprogramming and Endothelial Differentiation (2012) (0)
patterning provide context and positional information in Shh-directed neural Neural-specific Sox 2 input and differential Gli-binding affinity (2012) (0)
0330: Identification and Characterization of Important Signalling Pathways in Serous Ovarian Tumors (2006) (0)
Unsupervised clustering and epigenetic classification of single cells (2018) (0)
Statistica Sinica Preprint (2017) (0)
Abstract 4878: Sensitive and specific DNA and RNA sequencing techniques for detecting minimal residual disease (2017) (0)
Correction: Inferring Loss-of-Heterozygosity from Unpaired Tumors Using High-Density Oligonucleotide SNP Arrays (2007) (0)
5 DNA-Chip Analyzer ( dChip ) (0)
HumanUpstream and MouseUpstream: databases of promoter sequences in the human and mouse genomes. (2005) (0)
Sequencing of the Venter/HuRef genome using various strategies for the benchmarking of genome analysis tools (2018) (0)

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