Wolfram Weckwerth
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Researcher ORCID ID = 0000-0002-9719-6358
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Wolfram Weckwerthbiology Degrees
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Systems Biology
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Computational Biology
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Biochemistry
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Biology
Wolfram Weckwerth's Degrees
- PhD Biochemistry University of Cologne
- Masters Biology University of Cologne
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(Suggest an Edit or Addition)Wolfram Weckwerth's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- GMD@CSB.DB: the Golm Metabolome Database (2005) (1183)
- Natural products in drug discovery: advances and opportunities (2021) (1082)
- 1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana (2016) (840)
- Metabolomics in systems biology. (2003) (644)
- Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions (2016) (481)
- Process for the integrated extraction, identification and quantification of metabolites, proteins and RNA to reveal their co‐regulation in biochemical networks (2004) (375)
- Differential metabolic networks unravel the effects of silent plant phenotypes. (2004) (359)
- PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor (2007) (353)
- Proteome Analysis of Arabidopsis Leaf Peroxisomes Reveals Novel Targeting Peptides, Metabolic Pathways, and Defense Mechanisms[W] (2007) (333)
- Methylotrophic methanogenic Thermoplasmata implicated in reduced methane emissions from bovine rumen (2013) (302)
- Metabolomics: from pattern recognition to biological interpretation. (2005) (276)
- Observing and Interpreting Correlations in Metabolic Networks (2003) (267)
- Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments (2017) (264)
- Enrichment of phosphorylated proteins and peptides from complex mixtures using metal oxide/hydroxide affinity chromatography (MOAC) (2005) (263)
- Metabolite profiling in plant biology: platforms and destinations (2004) (238)
- Quantitative phosphoproteomics reveals the role of the AMPK plant ortholog SnRK1 as a metabolic master regulator under energy deprivation (2016) (210)
- A Cytosolic Pathway for the Conversion of Hydroxypyruvate to Glycerate during Photorespiration in Arabidopsis[W] (2008) (199)
- Medicago truncatula Root Nodule Proteome Analysis Reveals Differential Plant and Bacteroid Responses to Drought Stress12[W][OA] (2007) (195)
- Green systems biology - From single genomes, proteomes and metabolomes to ecosystems research and biotechnology. (2011) (183)
- Visualizing plant metabolomic correlation networks using clique-metabolite matrices (2001) (181)
- Can we discover novel pathways using metabolomic analysis? (2002) (173)
- SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants (2015) (160)
- Combination of Hypoglycemia and Metformin Impairs Tumor Metabolic Plasticity and Growth by Modulating the PP2A-GSK3β-MCL-1 Axis. (2019) (160)
- Metabolomics- and Proteomics-Assisted Genome Annotation and Analysis of the Draft Metabolic Network of Chlamydomonas reinhardtii (2008) (146)
- Chronic signaling via the metabolic checkpoint kinase mTORC1 induces macrophage granuloma formation and marks sarcoidosis progression (2016) (145)
- Integration of Metabolomic and Proteomic Phenotypes (2008) (143)
- Comparative analysis of phytohormone-responsive phosphoproteins in Arabidopsis thaliana using TiO2-phosphopeptide enrichment and mass accuracy precursor alignment. (2010) (143)
- d-GLYCERATE 3-KINASE, the Last Unknown Enzyme in the Photorespiratory Cycle in Arabidopsis, Belongs to a Novel Kinase Family (2005) (131)
- The role of mass spectrometry in plant systems biology. (2006) (130)
- Deletion of Glycine Decarboxylase in Arabidopsis Is Lethal under Nonphotorespiratory Conditions1[W][OA] (2007) (126)
- COVAIN: a toolbox for uni- and multivariate statistics, time-series and correlation network analysis and inverse estimation of the differential Jacobian from metabolomics covariance data (2012) (126)
- Proteomics and comparative genomics of Nitrososphaera viennensis reveal the core genome and adaptations of archaeal ammonia oxidizers (2016) (125)
- Deciphering metabolic networks. (2003) (123)
- Metabolomic networks in plants: Transitions from pattern recognition to biological interpretation. (2006) (122)
- Carbon metabolism and bacteroid functioning are involved in the regulation of nitrogen fixation in Medicago truncatula under drought and recovery. (2009) (120)
- Interpreting correlations in metabolomic networks. (2003) (115)
- Systemic Cold Stress Adaptation of Chlamydomonas reinhardtii* (2013) (114)
- Identification of Novel in vivo MAP Kinase Substrates in Arabidopsis thaliana Through Use of Tandem Metal Oxide Affinity Chromatography* (2012) (113)
- Comparative quantification and identification of phosphoproteins using stable isotope labeling and liquid chromatography/mass spectrometry. (2000) (107)
- The SnRK1 Kinase as Central Mediator of Energy Signaling between Different Organelles1[OPEN] (2018) (104)
- Integration of metabolomics and proteomics in molecular plant physiology--coping with the complexity by data-dimensionality reduction. (2008) (102)
- Targeted proteomics for Chlamydomonas reinhardtii combined with rapid subcellular protein fractionation, metabolomics and metabolic flux analyses. (2010) (98)
- MASCP Gator: An Aggregation Portal for the Visualization of Arabidopsis Proteomics Data1[C][OA] (2010) (97)
- Cell-specific protein profiling in Arabidopsis thaliana trichomes: identification of trichome-located proteins involved in sulfur metabolism and detoxification. (2004) (94)
- Metabolomics Unravel Contrasting Effects of Biodiversity on the Performance of Individual Plant Species (2010) (94)
- ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites (2007) (93)
- Cereal Crop Proteomics: Systemic Analysis of Crop Drought Stress Responses Towards Marker-Assisted Selection Breeding (2017) (92)
- Granger causality in integrated GC–MS and LC–MS metabolomics data reveals the interface of primary and secondary metabolism (2012) (92)
- Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness (2018) (89)
- System-level network analysis of nitrogen starvation and recovery in Chlamydomonas reinhardtii reveals potential new targets for increased lipid accumulation (2014) (89)
- Metabolomics: an integral technique in systems biology. (2010) (87)
- Differential Multisite Phosphorylation of the Trehalose-6-phosphate Synthase Gene Family in Arabidopsis thaliana (2005) (86)
- A metabolic signature of the beneficial interaction of the endophyte paenibacillus sp. isolate and in vitro-grown poplar plants revealed by metabolomics. (2009) (86)
- A survey of the Arabidopsis thaliana mitochondrial phosphoproteome (2009) (85)
- Correlative GC-TOF-MS-based metabolite profiling and LC-MS-based protein profiling reveal time-related systemic regulation of metabolite–protein networks and improve pattern recognition for multiple biomarker selection (2005) (85)
- Proteomics and Metabolomics: Two Emerging Areas for Legume Improvement (2015) (83)
- A universal protocol for the combined isolation of metabolites, DNA, long RNAs, small RNAs, and proteins from plants and microorganisms. (2014) (83)
- Subcellular reprogramming of metabolism during cold acclimation in Arabidopsis thaliana. (2017) (81)
- Dynamics of Plant Metabolism during Cold Acclimation (2019) (79)
- A gentle guide to the analysis of metabolomic data. (2007) (78)
- Use of network analysis of metabolic systems in bioengineering (2002) (78)
- Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins (2009) (75)
- Unpredictability of metabolism—the key role of metabolomics science in combination with next-generation genome sequencing (2011) (75)
- Metabolomics : methods and protocols (2007) (75)
- Linking protein fractionation with multidimensional monolithic reversed-phase peptide chromatography/mass spectrometry enhances protein identification from complex mixtures even in the presence of abundant proteins. (2004) (74)
- Cell-specific analysis of the tomato pollen proteome from pollen mother cell to mature pollen provides evidence for developmental priming. (2013) (74)
- Relative and absolute quantitative shotgun proteomics: targeting low-abundance proteins in Arabidopsis thaliana. (2006) (71)
- Phytochemical composition of Potentilla anserina L. analyzed by an integrative GC-MS and LC-MS metabolomics platform (2012) (71)
- Arabidopsis thaliana as a model organism for plant proteome research. (2010) (69)
- If the antibody fails – a mass Western approach (2008) (68)
- Ectopic overexpression of the cell wall invertase gene CIN1 leads to dehydration avoidance in tomato (2014) (68)
- An automated GCxGC‐TOF‐MS protocol for batch‐wise extraction and alignment of mass isotopomer matrixes from differential 13C‐labelling experiments: a case study for photoautotrophic‐mixotrophic grown Chlamydomonas reinhardtii cells (2009) (66)
- Metabolomics in Plant Stress Physiology. (2018) (64)
- A rapid approach for phenotype‐screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment (2008) (63)
- Proteome and metabolome profiling of cytokinin action in Arabidopsis identifying both distinct and similar responses to cytokinin down- and up-regulation (2013) (61)
- Combining metal oxide affinity chromatography (MOAC) and selective mass spectrometry for robust identification of in vivo protein phosphorylation sites (2005) (61)
- Male Sterility in Maize after Transient Heat Stress during the Tetrad Stage of Pollen Development1[OPEN] (2019) (56)
- Dynamic Adaption of Metabolic Pathways during Germination and Growth of Lily Pollen Tubes after Inhibition of the Electron Transport Chain1[W][OPEN] (2013) (56)
- An evolutionary perspective of AMPK-TOR signaling in the three domains of life. (2016) (55)
- Different functions of the C3HC4 zinc RING finger peroxins PEX10, PEX2, and PEX12 in peroxisome formation and matrix protein import (2010) (55)
- Biosynthesis of PF1022A and Related Cyclooctadepsipeptides* (2000) (53)
- System-Level and Granger Network Analysis of Integrated Proteomic and Metabolomic Dynamics Identifies Key Points of Grape Berry Development at the Interface of Primary and Secondary Metabolism (2017) (52)
- Comprehensive Cell-specific Protein Analysis in Early and Late Pollen Development from Diploid Microsporocytes to Pollen Tube Growth* (2013) (52)
- Primary Metabolism, Phenylpropanoids and Antioxidant Pathways Are Regulated in Potato as a Response to Potato virus Y Infection (2016) (51)
- Metabolomic and Proteomic Profiles Reveal the Dynamics of Primary Metabolism during Seed Development of Lotus (Nelumbo nucifera) (2016) (50)
- Bimodal dynamics of primary metabolism-related responses in tolerant potato-Potato virus Y interaction (2015) (50)
- Exploring natural variation of Pinus pinaster Aiton using metabolomics: Is it possible to identify the region of origin of a pine from its metabolites? (2016) (50)
- System level analysis of cacao seed ripening reveals a sequential interplay of primary and secondary metabolism leading to polyphenol accumulation and preparation of stress resistance. (2016) (49)
- Comprehensive tissue-specific proteome analysis of drought stress responses in Pennisetum glaucum (L.) R. Br. (Pearl millet). (2016) (49)
- PANOMICS meets germplasm (2020) (49)
- An improved detergent-compatible gel-fractionation LC-LTQ-Orbitrap-MS workflow for plant and microbial proteomics. (2014) (48)
- Proteomics of Heat-Stress and Ethylene-Mediated Thermotolerance Mechanisms in Tomato Pollen Grains (2018) (48)
- Consistency analysis of metabolic correlation networks (2007) (47)
- Stable isotope-free quantitative shotgun proteomics combined with sample pattern recognition for rapid diagnostics. (2006) (47)
- Evidence for novel tomato seed allergens: IgE-reactive legumin and vicilin proteins identified by multidimensional protein fractionation-mass spectrometry and in silico epitope modeling. (2009) (46)
- Neutral loss-based phosphopeptide recognition: a collection of caveats. (2007) (46)
- Field-omics—understanding large-scale molecular data from field crops (2014) (46)
- Biological nitrification inhibition in the rhizosphere: determining interactions and impact on microbially mediated processes and potential applications. (2020) (45)
- Absolute quantification of Medicago truncatula sucrose synthase isoforms and N-metabolism enzymes in symbiotic root nodules and the detection of novel nodule phosphoproteins by mass spectrometry (2008) (45)
- The parasitic mechanism of the holostemparasitic plant Cuscuta (2011) (44)
- A Specialized Bird Pollination System with a Bellows Mechanism for Pollen Transfer and Staminal Food Body Rewards (2014) (44)
- Stable isotope labeling of phosphopeptides for multiparallel kinase target analysis and identification of phosphorylation sites. (2003) (44)
- Metabolic Consequences of Infection of Grapevine (Vitis vinifera L.) cv. “Modra frankinja” with Flavescence Dorée Phytoplasma (2016) (44)
- Combined Metabolomic Analysis of Plasma and Urine Reveals AHBA, Tryptophan and Serotonin Metabolism as Potential Risk Factors in Gestational Diabetes Mellitus (GDM) (2017) (43)
- A Benchtop Fractionation Procedure for Subcellular Analysis of the Plant Metabolome (2016) (43)
- Altitudinal patterns of diversity and functional traits of metabolically active microorganisms in stream biofilms (2015) (42)
- Vacuolar sucrose cleavage prevents limitation of cytosolic carbohydrate metabolism and stabilizes photosynthesis under abiotic stress (2018) (42)
- ProMEX – a mass spectral reference database for plant proteomics (2012) (41)
- Metabolism and development – integration of micro computed tomography data and metabolite profiling reveals metabolic reprogramming from floral initiation to silique development (2013) (40)
- Pro- and Antioxidant Activity of Three Selected Flavan Type Flavonoids: Catechin, Eriodictyol and Taxifolin (2016) (40)
- Fast-forward breeding for a food-secure world. (2021) (40)
- Metabolomics and metabolite profiling (2013) (38)
- Time to articulate a vision for the future of plant proteomics – A global perspective: An initiative for establishing the International Plant Proteomics Organization (INPPO) (2011) (38)
- Biosynthesis of taxol: enzymatic acetylation of 10-deacetylbaccatin-III to baccatin-III in crude extracts from roots of Taxus baccata. (1996) (38)
- Comparison between Proteome and Transcriptome Response in Potato (Solanum tuberosum L.) Leaves Following Potato Virus Y (PVY) Infection (2017) (37)
- Proteomics survey of Solanaceae family: Current status and challenges ahead. (2017) (37)
- mzGroupAnalyzer-Predicting Pathways and Novel Chemical Structures from Untargeted High-Throughput Metabolomics Data (2014) (36)
- Heat stress response mechanisms in pollen development (2021) (36)
- Diurnal effects of anoxia on the metabolome of the seagrass Zostera marina (2015) (36)
- Pollen proteomics: from stress physiology to developmental priming (2016) (36)
- Quantitative in vivo phosphoproteomics reveals reversible signaling processes during nitrogen starvation and recovery in the biofuel model organism Chlamydomonas reinhardtii (2017) (35)
- Myo-inositol oxygenase is important for the removal of excess myo-inositol from syncytia induced by Heterodera schachtii in Arabidopsis roots (2013) (35)
- Integrated Physiological, Proteomic, and Metabolomic Analysis of Ultra Violet (UV) Stress Responses and Adaptation Mechanisms in Pinus radiata* (2017) (35)
- Systems biology for crop improvement (2021) (34)
- The handbook of plant metabolomics (2013) (34)
- Male Sterility in Maize after Transient Heat Stress during the Tetrad Stage of Pollen Development1 [OPEN]. (2019) (34)
- Solving the Differential Biochemical Jacobian from Metabolomics Covariance Data (2014) (34)
- Integrative profiling of metabolites and proteins: improving pattern recognition and biomarker selection for systems level approaches. (2007) (34)
- Heat-Treatment-Responsive Proteins in Different Developmental Stages of Tomato Pollen Detected by Targeted Mass Accuracy Precursor Alignment (tMAPA). (2015) (34)
- Iron chelation and redox chemistry of anthranilic acid and 3-hydroxyanthranilic acid: A comparison of two structurally related kynurenine pathway metabolites to obtain improved insights into their potential role in neurological disease development (2015) (33)
- Redox state‐dependent modulation of plant SnRK1 kinase activity differs from AMPK regulation in animals (2017) (33)
- Inverse Data-Driven Modeling and Multiomics Analysis Reveals Phgdh as a Metabolic Checkpoint of Macrophage Polarization and Proliferation (2019) (32)
- Physiological and Proteomic Signatures Reveal Mechanisms of Superior Drought Resilience in Pearl Millet Compared to Wheat (2021) (31)
- Resolving subcellular plant metabolism (2019) (31)
- An integrated strategy for identification and relative quantification of site-specific protein phosphorylation using liquid chromatography coupled to MS2/MS3. (2005) (31)
- Adjustment of photosynthetic activity to drought and fluctuating light in wheat (2020) (30)
- MAPA distinguishes genotype-specific variability of highly similar regulatory protein isoforms in potato tuber. (2011) (29)
- The multinational Arabidopsis steering subcommittee for proteomics assembles the largest proteome database resource for plant systems biology. (2008) (29)
- Mathematical modeling reveals that metabolic feedback regulation of SnRK1 and hexokinase is sufficient to control sugar homeostasis from energy depletion to full recovery (2014) (29)
- Plant protein phosphorylation monitored by capillary liquid chromatography--element mass spectrometry. (2007) (28)
- Quantitative Phosphoproteomic and System-Level Analysis of TOR Inhibition Unravel Distinct Organellar Acclimation in Chlamydomonas reinhardtii (2018) (28)
- Using ProtMAX to create high-mass-accuracy precursor alignments from label-free quantitative mass spectrometry data generated in shotgun proteomics experiments (2013) (26)
- Integrative molecular profiling indicates a central role of transitory starch breakdown in establishing a stable C/N homeostasis during cold acclimation in two natural accessions of Arabidopsis thaliana (2015) (26)
- An International Bioinformatics Infrastructure to Underpin the Arabidopsis Community (2010) (26)
- Metabolomics in practice : successful strategies to generate and analyze metabolic data (2013) (25)
- Metabolite changes with induction of Cuscuta haustorium and translocation from host plants (2012) (25)
- Induction and quantitative proteomic analysis of cell dedifferentiation during callus formation of lotus (Nelumbo nucifera Gaertn.spp. baijianlian). (2016) (24)
- Impact of arbuscular mycorrhizal fungi on the allergenic potential of tomato (2011) (23)
- The membrane proteome of male gametophyte in Solanum lycopersicum. (2016) (23)
- Protein sumoylation and phosphorylation intersect in Arabidopsis signaling (2017) (23)
- Immunocytochemical and molecular data guide peptide identification by mass spectrometry: orcokinin and orcomyotropin-related peptides in the stomatogastric nervous system of several crustacean species. (2003) (22)
- Proteometabolomic response of Deinococcus radiodurans exposed to UVC and vacuum conditions: Initial studies prior to the Tanpopo space mission (2017) (22)
- Antioxidant Properties and the Formation of Iron Coordination Complexes of 8-Hydroxyquinoline (2018) (22)
- The High Light Response in Arabidopsis Requires the Calcium Sensor Protein CAS, a Target of STN7- and STN8-Mediated Phosphorylation (2019) (22)
- Cajanus cajan- a source of PPARγ activators leading to anti-inflammatory and cytotoxic effects. (2016) (22)
- Plastic and genetic responses of a common sedge to warming have contrasting effects on carbon cycle processes (2018) (22)
- Molecular Mechanisms of Microbial Survivability in Outer Space: A Systems Biology Approach (2020) (21)
- Glycolate Induces Redox Tuning Of Photosystem II in Vivo: Study of a Photorespiration Mutant1 (2018) (21)
- Lichen secondary metabolites affect growth of Physcomitrella patens by allelopathy (2017) (21)
- The different proteomes of Chlamydomonas reinhardtii. (2012) (21)
- Molecular repertoire of Deinococcus radiodurans after 1 year of exposure outside the International Space Station within the Tanpopo mission (2020) (21)
- Molecular response of Deinococcus radiodurans to simulated microgravity explored by proteometabolomic approach (2019) (20)
- Mass Spectrometry Untangles Plant Membrane Protein Signaling Networks. (2020) (20)
- Targeted quantitative analysis of a diurnal RuBisCO subunit expression and translation profile in Chlamydomonas reinhardtii introducing a novel Mass Western approach. (2015) (20)
- Eco-Metabolomics and Metabolic Modeling: Making the Leap From Model Systems in the Lab to Native Populations in the Field (2018) (19)
- Proteomic and Metabolomic Profiling of Deinococcus radiodurans Recovering After Exposure to Simulated Low Earth Orbit Vacuum Conditions (2019) (18)
- The variations in the nuclear proteome reveal new transcription factors and mechanisms involved in UV stress response in Pinus radiata. (2016) (17)
- Root exudation of contrasting drought-stressed pearl millet genotypes conveys varying biological nitrification inhibition (BNI) activity (2021) (17)
- Sumoylation and phosphorylation: hidden and overt links. (2018) (17)
- Pepino mosaic virus Infection of Tomato Affects Allergen Expression, but Not the Allergenic Potential of Fruits (2013) (17)
- Current research in biotechnology: Exploring the biotech forefront (2019) (16)
- Expression of root glutamate dehydrogenase genes in tobacco plants subjected to boron deprivation. (2011) (16)
- Coordination Complex Formation and Redox Properties of Kynurenic and Xanthurenic Acid Can Affect Brain Tissue Homeodynamics (2019) (16)
- Effects of endogenous neurotoxin quinolinic acid on reactive oxygen species production by Fenton reaction catalyzed by iron or copper (2015) (15)
- The TOR–Auxin Connection Upstream of Root Hair Growth (2021) (15)
- Spatial distribution of proteins and metabolites in developing wheat grain and their differential regulatory response during the grain filling process (2021) (15)
- Functional Traits 2.0: The power of the metabolome for ecology (2021) (15)
- Longer telomeres in chronic, moderate, unconjugated hyperbilirubinaemia: insights from a human study on Gilbert’s Syndrome (2016) (15)
- Introduction to Lipid (FAME) Analysis in Algae Using Gas Chromatography–Mass Spectrometry (2013) (14)
- Toward a Unification of System-Theoretical Principles in Biology and Ecology—The Stochastic Lyapunov Matrix Equation and Its Inverse Application (2019) (14)
- Tomato allergy: impact of genotype and environmental factors on the biological response. (2011) (14)
- Structural and Functional Heat Stress Responses of Chloroplasts of Arabidopsis thaliana (2020) (14)
- Mathematical Modeling of Plant Metabolism―From Reconstruction to Prediction (2012) (13)
- Proteomics for abiotic stresses in legumes: present status and future directions (2022) (13)
- Subcellular dynamics of proteins and metabolites under abiotic stress reveal deferred response of the Arabidopsis thaliana hexokinase-1 mutant gin2-1 to high light. (2019) (13)
- Identification of putative new tomato allergens and differential interaction with IgEs of tomato allergic subjects (2013) (13)
- Scoring and identifying organism-specific functional patterns and putative phosphorylation sites in protein sequences using mutual information. (2003) (13)
- From Bench to Bountiful Harvests: A Road Map for the Next Decade of Arabidopsis Research[OA] (2012) (13)
- Formation of Embryo-like Structures in Tissue Cultures of Different Yew Species (1995) (12)
- Integration of proteomic and metabolomic profiling as well as metabolic modeling for the functional analysis of metabolic networks. (2011) (12)
- Microscopic and Proteomic Analysis of Dissected Developing Barley Endosperm Layers Reveals the Starchy Endosperm as Prominent Storage Tissue for ER-Derived Hordeins Alongside the Accumulation of Barley Protein Disulfide Isomerase (HvPDIL1-1) (2018) (12)
- Combined multivariate analysis and machine learning reveals a predictive module of metabolic stress response in Arabidopsis thaliana† †Electronic supplementary information (ESI) available. See DOI: 10.1039/c8mo00095f (2018) (12)
- Boosting the Globalization of Plant Proteomics through INPPO: Current Developments and Future Prospects (2012) (12)
- A workflow for mathematical modeling of subcellular metabolic pathways in leaf metabolism of Arabidopsis thaliana (2013) (12)
- The Handbook of Plant Metabolomics: KAHL:PLANT METABOLOMICS O-BK (2013) (11)
- Functional analysis of proteins and protein species using shotgun proteomics and linear mathematics (2011) (11)
- A Strategy for Functional Interpretation of Metabolomic Time Series Data in Context of Metabolic Network Information (2016) (11)
- Deciphering key proteins of oil palm (Elaeis guineensis Jacq.) fruit mesocarp development by proteomics and chemometrics (2018) (10)
- Using RT-qPCR, Proteomics, and Microscopy to Unravel the Spatio-Temporal Expression and Subcellular Localization of Hordoindolines Across Development in Barley Endosperm (2018) (10)
- From proteomics to systems biology: MAPA, MASS WESTERN, PROMEX, and COVAIN as a user-oriented platform. (2014) (10)
- Tandem metal-oxide affinity chromatography for enhanced depth of phosphoproteome analysis. (2014) (10)
- The Potato Yam Phyllosphere Ectosymbiont Paraburkholderia sp. Msb3 Is a Potent Growth Promotor in Tomato (2020) (10)
- Biodiesel and poly-unsaturated fatty acids production from algae and crop plants - a rapid and comprehensive workflow for lipid analysis. (2016) (10)
- Facing challenges in Proteomics today and in the coming decade: Report of Roundtable Discussions at the 4th EuPA Scientific Meeting, Portugal, Estoril 2010. (2011) (9)
- Challenges of Inversely Estimating Jacobian from Metabolomics Data (2015) (9)
- Species-specific analysis of protein sequence motifs using mutual information (2005) (9)
- Rapid delivery systems for future food security (2021) (9)
- The Quest for System-Theoretical Medicine in the COVID-19 Era (2021) (9)
- Multiomics approach unravels fertility transition in a pigeonpea line for a two‐line hybrid system (2020) (8)
- Comparison of enteric methane production predicted from the CH 4 /CO 2 ratio and measured in respiration chambers (2013) (8)
- Fragmentation patterns of methyloxime-trimethylsilyl derivatives of constitutive mono- and disaccharide isomers analyzed by gas chromatography/field ionization mass spectrometry. (2015) (8)
- Lessons Learned from the Studies of Roots Shaded from Direct Root Illumination (2021) (8)
- Automated Protein Turnover Calculations from 15N Partial Metabolic Labeling LC/MS Shotgun Proteomics Data (2014) (8)
- Boron nitride as desalting material in combination with phosphopeptide enrichment in shotgun proteomics. (2014) (8)
- Exogenous carbon source supplementation counteracts root and hypocotyl growth limitations under increased cotyledon shading, with glucose and sucrose differentially modulating growth curves (2021) (8)
- Using COVAIN to Analyze Metabolomics Data (2013) (7)
- Metabolite Profiling in Arabidopsis thaliana with Moderately Impaired Photorespiration Reveals Novel Metabolic Links and Compensatory Mechanisms of Photorespiration (2021) (7)
- In Vitro Evaluation of Pro- and Antioxidant Effects of Flavonoid Tricetin in Comparison to Myricetin (2020) (7)
- Magnetic Field Induced Changes in the Shoot and Root Proteome of Barley (Hordeum vulgare L.) (2021) (7)
- Cage bedding modifies metabolic and gut microbiota profiles in mouse studies applying dietary restriction (2020) (7)
- Genomic footprints of repeated evolution of CAM photosynthesis in a Neotropical species radiation. (2020) (7)
- Current status of the multinational Arabidopsis community (2020) (7)
- A tandem affinity purification tag of TGA2 for isolation of interacting proteins in Arabidopsis thaliana (2014) (7)
- Mathematical Modeling Approaches in Plant Metabolomics. (2018) (6)
- PANOMICS at the interface of root-soil microbiome and BNI. (2022) (6)
- Draft Genome Sequence of the Growth-Promoting Endophyte Paenibacillus sp. P22, Isolated from Populus (2014) (6)
- Girdling interruption between source and sink in Quercus pubescens does not trigger leaf senescence (2016) (6)
- Pollen Metabolome Dynamics: Biochemistry, Regulation and Analysis (2017) (6)
- Molecular Mechanisms of Tungsten Toxicity Differ for Glycine max Depending on Nitrogen Regime (2019) (6)
- Metabolomics: Integrating the Metabolome and the Proteome for Systems Biology (2009) (5)
- A Cloud Framework for High Throughput Biological Data Processing (2011) (5)
- Dissecting Metabolism of Leaf Nodules in Ardisia crenata and Psychotria punctata (2021) (5)
- Genomic footprints of repeated evolution of CAM photosynthesis in tillandsioid bromeliads (2018) (5)
- Methionine oxidation in peptides--a source for false positive phosphopeptide identification in neutral loss driven MS3. (2006) (5)
- Vacuolar invertase activity shapes photosynthetic stress response of Arabidopsis thaliana and stabilizes central energy supply (2017) (4)
- Dataset of UV induced changes in nuclear proteome obtained by GeLC-Orbitrap/MS in Pinus radiata needles (2016) (4)
- Tissue-Specific Proteome and Subcellular Microscopic Analyses Reveal the Effect of High Salt Concentration on Actin Cytoskeleton and Vacuolization in Aleurone Cells during Early Germination of Barley (2021) (4)
- Recurrent allopolyploidization events diversify eco-physiological traits in marsh orchids (2021) (4)
- Paraburkholderia dioscoreae sp. nov., a novel plant associated growth promotor (2021) (4)
- Eigenvalues of Jacobian Matrices Report on Steps of Metabolic Reprogramming in a Complex Plant-Environment Interaction (2013) (4)
- Fourier transform infrared (FTIR) spectroscopy approach combined with discriminant analysis and prediction model for crude palm oil authentication of different geographical and temporal origins (2022) (4)
- Plasticity of the primary metabolome in 241 cold grown Arabidopsis thaliana accessions and its relation to natural habitat temperature (2020) (3)
- Sulforaphane diminishes moonlighting of pyruvate kinase M2 and interleukin 1β expression in M1 (LPS) macrophages (2022) (3)
- Editorial: Sorghum and Pearl Millet as Climate Resilient Crops for Food and Nutrition Security (2022) (3)
- Mexicanolide-type limonoids from the twigs and leaves of Cipadessa baccifera. (2020) (3)
- Mass Western for absolute quantification of target proteins and considerations about the instrument of choice. (2014) (3)
- Interpretable machine learning methods for predictions in systems biology from omics data (2022) (3)
- CSB . DB : the Golm Metabolome Database (2005) (3)
- Ectopic overexpression of the cell wall invertase gene CIN1 leads to dehydration avoidance in tomato (2015) (2)
- Branched-chain ketoacids derived from cancer cells modulate macrophage polarization and metabolic reprogramming (2022) (2)
- Metabolic Networks from a Systems Perspective: From Experiment to Biological Interpretation (2004) (2)
- Proximity labelling allows to study novel factors in chloroplast developmenta (2022) (2)
- Influence of the environment on ragweed pollen and their sensitizing capacity in a mouse model of allergic lung inflammation (2022) (2)
- Multisite Protein Phosphorylation in Plants - Technical Considerations and Biological Implications (2006) (2)
- Throttling Growth Speed: Evaluation of aux1-7 Root Growth Profile by Combining D-Root system and Root Penetration Assay (2022) (2)
- Accurate mass QTOF and MS∧n Ion trap measurements require additional NMR data for plant metabolites de-novo identification (2002) (2)
- Erratum: Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments (2018) (2)
- Mass spectrometry: quantitation. (2006) (2)
- Protocol for Enrichment of the Membrane Proteome of Mature Tomato Pollen. (2017) (2)
- Metabolic Networks from a Systems Perspective (2005) (2)
- Gas Chromatography Coupled to Mass Spectrometry for Metabolomics Research (2014) (1)
- Isomer analysis by mass spectrometry in clinical science (2022) (1)
- A Potential Citrate Shunt in Erythrocytes of PKAN Patients Caused by Mutations in Pantothenate Kinase 2 (2022) (1)
- Draft Genome Sequence of the Growth-Promoting Endophyte Paenibacillus sp . P 22 , Isolated from Populus (2014) (1)
- Biochemical Profiling in Plant Systems: Phenotypes beyond chemical Equivalence. (2004) (1)
- Proteomic Response of Deinococcus radiodurans to Short-Term Real Microgravity during Parabolic Flight Reveals Altered Abundance of Proteins Involved in Stress Response and Cell Envelope Functions (2021) (1)
- Heat-induced proteomic changes in anthers of contrasting rice genotypes under variable stress regimes (2023) (1)
- RaPiD-chamber: Easy to self-assemble live-imaging chamber with adjustable LEDs allows to track small differences in dynamic plant movement adaptation on tissue level (2022) (1)
- Metabolomics and systems biology approaches for the investigation of endophytes – plant- interaction – a vision for their importance in biotechnology and natural product research (2011) (1)
- Running title: Integration of the metabolomic and proteomic stress phenotype. (2013) (1)
- Phytochemical composition of Potentilla anserina L. analyzed by an integrative GC-MS and LC-MS metabolomics platform (2012) (1)
- Phosphoproteins: Where are we Today? (2008) (1)
- Integrative molecular profiling indicates a central role of transitory starch breakdown in establishing a stable C/N homeostasis during cold acclimation in two natural accessions of Arabidopsis thaliana (2015) (1)
- An Innovative Perspective on Metabolomics Data Analysis in Biomedical Research Using Concept Drift Detection (2021) (1)
- Editorial: Sorghum and pearl millet as climate resilient crops for food and nutrition security, volume II (2023) (1)
- Perspectives of (/memorandum for) systems thinking on COVID‐19 pandemic and pathology (2022) (1)
- Rewiring of Gene Expression in Pseudomonas aeruginosa During Diauxic Growth Reveals an Indirect Regulation of the MexGHI-OpmD Efflux Pump by Hfq (2022) (1)
- Short Communication (1996) (1)
- Studying AMPK in an Evolutionary Context. (2018) (1)
- Lichen secondary metabolites affect growth of Physcomitrella patens by allelopathy (2016) (0)
- Metabolic Reprogramming and Its Role in Plant Cold Acclimation (2019) (0)
- Faculty Opinions recommendation of A single bacterial genus maintains root growth in a complex microbiome. (2020) (0)
- Identification of apple cultivars hypoallergenic for birch pollen‐allergic individuals by a multidisciplinary in vitro and in vivo approach (2022) (0)
- Pollen proteomics: from stress physiology to developmental priming (2016) (0)
- Root exudation of contrasting drought-stressed pearl millet genotypes conveys varying biological nitrification inhibition (BNI) activity (2021) (0)
- Ferroptosis is the key cellular process mediating Bisphenol A responses in Chlamydomonas and a promising target for enhancing microalgae-based bioremediation. (2023) (0)
- COVAIN: a toolbox for uni- and multivariate statistics, time-series and correlation network analysis and inverse estimation of the differential Jacobian from metabolomics covariance data (2012) (0)
- Author response: SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants (2015) (0)
- Bimodal dynamics of primary metabolism-related responses in tolerant potato-Potato virus Y interaction (2015) (0)
- Inverse Data-Driven Modelling and Multiomics Analysis Reveals Phgdh as a Metabolic Checkpoint of Macrophage Polarization and Proliferation (2019) (0)
- Molecular repertoire of Deinococcus radiodurans after 1 year of exposure outside the International Space Station within the Tanpopo mission (2020) (0)
- A process for producing baccatin III by enzymatic synthesis (1998) (0)
- Diurnal effects of anoxia on the metabolome of the seagrass Zostera marina (2015) (0)
- The molecular response of Deinococcus radiodurans to real and simulated outerspace environment (2018) (0)
- Data files related to Pearl millet draft genome assembly v1.1, scaffolds and annotations (2019) (0)
- Recent insights into metabolic and signalling events of directional root growth regulation and its implications for sustainable crop production systems (2023) (0)
- (±)-Catechin—A Mass-Spectrometry-Based Exploration Coordination Complex Formation with FeII and FeIII (2022) (0)
- Chapter 7. Metabolic Engineering (2009) (0)
- A tandem affinity purification tag of TGA2 for isolation of interacting proteins in Arabidopsis thaliana. (2014) (0)
- The inducible increase or decrease in endogenous cytokininlevels has both specific and overlapping effects on proteomeand metabolome of Arabidopsis (2012) (0)
- Investigation of the interaction of endophytes and poplar plants in in vitro culture and field trials. (2015) (0)
- Molecular response of Deinococcus radiodurans to simulated microgravity explored by proteometabolomic approach (2019) (0)
- Differential metabolic correlation networks in plant physiology (2004) (0)
- INPPO Actions and Recognition as a Driving Force for Progress in Plant Proteomics: Change of Guard, INPPO Update, and Upcoming Activities (2013) (0)
- Quantitative Proteomic Analysis of Interferon Response in Human Liver Cells Using the Isotope Coded Affinity Tag Method and Novel Bioinformatics Tools Isotope of Phosphopeptides for Multiparallel Kinase Target Analysis and Identification of Phosphorylation Sites (2003) (0)
- development from diploid microsporocytes to pollen tube growth Running title: Proteomics of pollen development (2013) (0)
- Erratum to: Bimodal dynamics of primary metabolism-related responses in tolerant potato-Potato virus Y interaction (2017) (0)
- Granger causality in integrated GC–MS and LC–MS metabolomics data reveals the interface of primary and secondary metabolism (2012) (0)
- A Revealed Imperfection in Concept Drift Correction in Metabolomics Modeling (2022) (0)
- Molecular response of Deinococcus radiodurans exposed to vacuum conditions ofLow Earth Orbit (2018) (0)
- Erratum to: Bimodal dynamics of primary metabolism-related responses in tolerant potato-Potato virus Y interaction (2017) (0)
- The coupling of transcriptome and proteome adaptation during development and heat stress response of tomato pollen (2018) (0)
- COVRECON: Combining Genome-scale Metabolic Network Reconstruction and Data-driven Inverse Modeling to Reveal Changes in Metabolic Interaction Networks (2023) (0)
- Systems biology approach for analysis of mobile genetic elements in chicken gut microbiome (2022) (0)
- ARABIDOMICS- Integration of alterations on transcript, protein and metabolite level of Arabidopsis thaliana exposed to simulated microgravity (2015) (0)
- Cage Bedding affects Microbiota and Metabolism in Mice (2020) (0)
- Linear Predictive Modeling for Immune Metabolites Related to Other Metabolites (2022) (0)
- Leaf metabolic traits reveal hidden dimensions of plant form and function (2023) (0)
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