Xuemei Chen
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Chinese-American molecular biologist
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Xuemei Chenbiology Degrees
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Biology
Xuemei Chen's Degrees
- PhD Molecular and Cell Biology University of California, Berkeley
- Bachelors Biology Peking University
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Why Is Xuemei Chen Influential?
(Suggest an Edit or Addition)According to Wikipedia, Xuemei Chen is a Chinese-American molecular biologist. She is the Furuta Chair Professor in the Department of Botany and Plant Sciences at the University of California, Riverside. She was elected to the US National Academy of Sciences in 2013.
Xuemei Chen's Published Works
Published Works
- A uniform system for microRNA annotation. (2003) (1825)
- A MicroRNA as a Translational Repressor of APETALA2 in Arabidopsis Flower Development (2004) (1468)
- CARPEL FACTORY, a Dicer Homolog, and HEN1, a Novel Protein, Act in microRNA Metabolism in Arabidopsis thaliana (2002) (1260)
- Criteria for Annotation of Plant MicroRNAs (2008) (1146)
- Methylation as a Crucial Step in Plant microRNA Biogenesis (2005) (1056)
- Small RNAs and their roles in plant development. (2009) (842)
- Methylation Protects miRNAs and siRNAs from a 3′-End Uridylation Activity in Arabidopsis (2005) (788)
- Biogenesis, Turnover, and Mode of Action of Plant MicroRNAs[OPEN] (2013) (766)
- microRNA biogenesis and function in plants (2005) (514)
- HEN1 recognizes 21–24 nt small RNA duplexes and deposits a methyl group onto the 2′ OH of the 3′ terminal nucleotide (2006) (442)
- MicroRNAs Inhibit the Translation of Target mRNAs on the Endoplasmic Reticulum in Arabidopsis (2013) (439)
- Orchestration of the Floral Transition and Floral Development in Arabidopsis by the Bifunctional Transcription Factor APETALA2[W][OA] (2010) (436)
- Degradation of microRNAs by a Family of Exoribonucleases in Arabidopsis (2008) (414)
- RNAi-mediated viral immunity requires amplification of virus-derived siRNAs in Arabidopsis thaliana (2009) (389)
- Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids (2009) (315)
- The FHA domain proteins DAWDLE in Arabidopsis and SNIP1 in humans act in small RNA biogenesis (2008) (311)
- Arabidopsis HEN1 A Genetic Link between Endogenous miRNA Controlling Development and siRNA Controlling Transgene Silencing and Virus Resistance (2003) (310)
- The regulation of genes and genomes by small RNAs (2007) (289)
- Effective Small RNA Destruction by the Expression of a Short Tandem Target Mimic in Arabidopsis[C][W] (2012) (283)
- The 'how' and 'where' of plant microRNAs. (2017) (281)
- The role of Mediator in small and long noncoding RNA production in Arabidopsis thaliana (2011) (252)
- Intergenic transcription by RNA polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in Arabidopsis. (2009) (247)
- siRNAs targeting an intronic transposon in the regulation of natural flowering behavior in Arabidopsis. (2004) (226)
- HEN1 functions pleiotropically in Arabidopsis development and acts in C function in the flower. (2002) (210)
- Oomycete pathogens encode RNA silencing suppressors (2013) (206)
- A Histone Acetyltransferase Regulates Active DNA Demethylation in Arabidopsis (2012) (202)
- ARGONAUTE10 and ARGONAUTE1 Regulate the Termination of Floral Stem Cells through Two MicroRNAs in Arabidopsis (2011) (193)
- AGAMOUS Terminates Floral Stem Cell Maintenance in Arabidopsis by Directly Repressing WUSCHEL through Recruitment of Polycomb Group Proteins[W] (2011) (183)
- The Arabidopsis Nucleotidyl Transferase HESO1 Uridylates Unmethylated Small RNAs to Trigger Their Degradation (2012) (183)
- Regulation of small RNA stability: methylation and beyond (2012) (182)
- DICER-LIKE2 Plays a Primary Role in Transitive Silencing of Transgenes in Arabidopsis (2008) (177)
- Small RNA metabolism in Arabidopsis. (2008) (176)
- miR172 regulates stem cell fate and defines the inner boundary of APETALA3 and PISTILLATA expression domain in Arabidopsis floral meristems. (2007) (175)
- HUA1, a Regulator of Stamen and Carpel Identities in Arabidopsis, Codes for a Nuclear RNA Binding Protein (2001) (167)
- Two RNA binding proteins, HEN4 and HUA1, act in the processing of AGAMOUS pre-mRNA in Arabidopsis thaliana. (2003) (167)
- Small RNAs in development - insights from plants. (2012) (157)
- Concerted genomic targeting of H3K27 demethylase REF6 and chromatin-remodeling ATPase BRM in Arabidopsis (2016) (153)
- Uridylation of miRNAs by HEN1 SUPPRESSOR1 in Arabidopsis (2012) (149)
- Plant Noncoding RNAs: Hidden Players in Development and Stress Responses. (2019) (142)
- Detection of Pol IV/RDR2-dependent transcripts at the genomic scale in Arabidopsis reveals features and regulation of siRNA biogenesis (2015) (141)
- Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.) (2009) (137)
- Transgenically expressed viral RNA silencing suppressors interfere with microRNA methylation in Arabidopsis (2006) (135)
- Overexpression of mtlD gene in transgenic Populus tomentosa improves salt tolerance through accumulation of mannitol. (2005) (135)
- Small RNA-Directed Epigenetic Natural Variation in Arabidopsis thaliana (2008) (133)
- NOT2 Proteins Promote Polymerase II–Dependent Transcription and Interact with Multiple MicroRNA Biogenesis Factors in Arabidopsis[C][W] (2013) (132)
- A Phytophthora Effector Suppresses Trans-Kingdom RNAi to Promote Disease Susceptibility. (2019) (129)
- Structural insights into mechanisms of the small RNA methyltransferase HEN1 (2009) (128)
- HUA ENHANCER3 reveals a role for a cyclin-dependent protein kinase in the specification of floral organ identity in Arabidopsis (2004) (116)
- Biochemical Activities of Arabidopsis RNA-dependent RNA Polymerase 6* (2008) (112)
- Small RNAs - secrets and surprises of the genome. (2010) (110)
- Roles of small RNAs in soybean defense against Phytophthora sojae infection. (2014) (107)
- Methylation protects microRNAs from an AGO1-associated activity that uridylates 5′ RNA fragments generated by AGO1 cleavage (2014) (103)
- The evolution of microRNAs in plants. (2017) (102)
- AUXIN RESPONSE FACTOR 3 integrates the functions of AGAMOUS and APETALA2 in floral meristem determinacy. (2014) (100)
- Floral patterning defects induced by Arabidopsis APETALA2 and microRNA172 expression in Nicotiana benthamiana (2006) (97)
- Plant MicroRNAs Display Differential 3′ Truncation and Tailing Modifications That Are ARGONAUTE1 Dependent and Conserved Across Species[W] (2013) (95)
- MicroRNA metabolism in plants. (2008) (93)
- The Arabidopsis SWI2/SNF2 Chromatin Remodeler BRAHMA Regulates Polycomb Function during Vegetative Development and Directly Activates the Flowering Repressor Gene SVP (2015) (93)
- Biogenesis of phased siRNAs on membrane-bound polysomes in Arabidopsis (2016) (92)
- Intercellular and systemic trafficking of RNAs in plants (2018) (90)
- Dynamics of histone H3 lysine 27 trimethylation in plant development. (2011) (88)
- Distinct and Cooperative Activities of HESO1 and URT1 Nucleotidyl Transferases in MicroRNA Turnover in Arabidopsis (2015) (86)
- The Anaphase-Promoting Complex Is a Dual Integrator That Regulates Both MicroRNA-Mediated Transcriptional Regulation of Cyclin B1 and Degradation of Cyclin B1 during Arabidopsis Male Gametophyte Development[C][W] (2011) (82)
- RNA polymerase V-dependent small RNAs in Arabidopsis originate from small, intergenic loci including most SINE repeats (2012) (81)
- The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element (2012) (79)
- Conservation and divergence of small RNA pathways and microRNAs in land plants (2017) (77)
- LEUNIG and SEUSS co-repressors regulate miR172 expression in Arabidopsis flowers (2011) (74)
- POWERDRESS and HDA9 interact and promote histone H3 deacetylation at specific genomic sites in Arabidopsis (2016) (73)
- MicroRNA–Mediated Repression of the Seed Maturation Program during Vegetative Development in Arabidopsis (2012) (70)
- POWERDRESS and Diversified Expression of the MIR172 Gene Family Bolster the Floral Stem Cell Network (2013) (69)
- PANDORA-seq expands the repertoire of regulatory small RNAs by overcoming RNA modifications (2021) (69)
- Synergistic and Independent Actions of Multiple Terminal Nucleotidyl Transferases in the 3’ Tailing of Small RNAs in Arabidopsis (2015) (69)
- ARGONAUTE10 promotes the degradation of miR165/6 through the SDN1 and SDN2 exonucleases in Arabidopsis (2017) (68)
- siRNAs compete with miRNAs for methylation by HEN1 in Arabidopsis (2010) (68)
- Ancient Origin and Recent Innovations of RNA Polymerase IV and V (2015) (67)
- The THO Complex Non-Cell-Autonomously Represses Female Germline Specification through the TAS3-ARF3 Module (2017) (66)
- Traffic into silence: endomembranes and post-transcriptional RNA silencing (2014) (65)
- KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis (2017) (57)
- Mechanisms of microRNA turnover. (2015) (57)
- NAD+-capped RNAs are widespread in the Arabidopsis transcriptome and can probably be translated (2019) (56)
- Transcriptional silencing induced by Arabidopsis T-DNA mutants is associated with 35S promoter siRNAs and requires genes involved in siRNA-mediated chromatin silencing. (2010) (56)
- RNA Quality Control as a Key to Suppressing RNA Silencing of Endogenous Genes in Plants. (2016) (56)
- The Arabidopsis MOS4-Associated Complex Promotes MicroRNA Biogenesis and Precursor Messenger RNA Splicing (2017) (54)
- PAUSED, a Putative Exportin-t, Acts Pleiotropically in Arabidopsis Development But Is Dispensable for Viability1[w] (2003) (52)
- HUA ENHANCER2, a putative DExH-box RNA helicase, maintains homeotic B and C gene expression in Arabidopsis. (2002) (52)
- Linking Key Steps of MicroRNA Biogenesis by TREX-2 and the Nuclear Pore Complex in Arabidopsis (2020) (50)
- The disease resistance protein SNC1 represses the biogenesis of microRNAs and phased siRNAs (2018) (48)
- Computational prediction of novel non-coding RNAs in Arabidopsis thaliana (2009) (47)
- The Exosome and Trans-Acting Small Interfering RNAs Regulate Cuticular Wax Biosynthesis during Arabidopsis Inflorescence Stem Development1[OPEN] (2014) (46)
- APETALA2 antagonizes the transcriptional activity of AGAMOUS in regulating floral stem cells in Arabidopsis thaliana (2016) (44)
- Genome-wide analysis of microRNAs in rubber tree (Hevea brasiliensis L.) using high-throughput sequencing (2012) (44)
- NAD tagSeq reveals that NAD+-capped RNAs are mostly produced from a large number of protein-coding genes in Arabidopsis (2019) (43)
- The PROTEIN PHOSPHATASE4 Complex Promotes Transcription and Processing of Primary microRNAs in Arabidopsis (2019) (41)
- A Resource for Inactivation of MicroRNAs Using Short Tandem Target Mimic Technology in Model and Crop Plants. (2018) (40)
- YTHDF2 Binds to 5-Methylcytosine in RNA and Modulates the Maturation of Ribosomal RNA. (2019) (36)
- Plant and animal small RNA communications between cells and organisms (2021) (36)
- DNA Topoisomerase I Affects Polycomb Group Protein-Mediated Epigenetic Regulation and Plant Development by Altering Nucleosome Distribution in Arabidopsis[W] (2014) (36)
- Approaches for studying microRNA and small interfering RNA methylation in vitro and in vivo. (2007) (32)
- PARylation of the forkhead‐associated domain protein DAWDLE regulates plant immunity (2016) (31)
- Colchicine-induced apoptosis in human normal liver L-02 cells by mitochondrial mediated pathways. (2012) (29)
- Global co-transcriptional splicing in Arabidopsis and the correlation with splicing regulation in mature RNAs. (2019) (29)
- SUVH1, a Su(var)3–9 family member, promotes the expression of genes targeted by DNA methylation (2015) (28)
- FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis (2016) (28)
- Biogenesis of a 22-nt microRNA in Phaseoleae species by precursor-programmed uridylation (2018) (27)
- FIERY1 promotes microRNA accumulation by suppressing rRNA-derived small interfering RNAs in Arabidopsis (2019) (27)
- Uridylation and adenylation of RNAs (2015) (27)
- Genome-Wide Transcript and Small RNA Profiling Reveals Transcriptomic Responses to Heat Stress1[OPEN] (2019) (27)
- TarHunter, a tool for predicting conserved microRNA targets and target mimics in plants (2018) (24)
- Minimal regions in the Arabidopsis PISTILLATA promoter responsive to the APETALA3/PISTILLATA feedback control do not contain a CArG box (2000) (24)
- DNA Topoisomerase 1α Promotes Transcriptional Silencing of Transposable Elements through DNA Methylation and Histone Lysine 9 Dimethylation in Arabidopsis (2014) (23)
- Regulation of Female Germline Specification via Small RNA Mobility in Arabidopsis. (2020) (23)
- Verification of DNA motifs in Arabidopsis using CRISPR/Cas9‐mediated mutagenesis (2018) (22)
- Noncoding RNAs and DNA Methylation in Plants. (2014) (22)
- Small RNAs meet their targets: When methylation defends miRNAs from uridylation (2014) (22)
- HSP90 inhibitors stimulate DNAJB4 protein expression through a mechanism involving N6-methyladenosine (2019) (20)
- Transcriptional landscapes of Axolotl (Ambystoma mexicanum). (2018) (20)
- A silencing safeguard: links between RNA silencing and mRNA processing in Arabidopsis. (2008) (20)
- Uridylation of miRNAs by HEN 1 SUPPRESSOR 1 in Arabidopsis (2017) (20)
- Fast-suppressor screening for new components in protein trafficking, organelle biogenesis and silencing pathway in Arabidopsis thaliana using DEX-inducible FREE1-RNAi plants. (2015) (20)
- Analysis of miRNA Modifications. (2010) (19)
- Generation of a luciferase-based reporter for CHH and CG DNA methylation in Arabidopsis thaliana (2013) (18)
- Functions of Arabidopsis DXO1Arabidopsis DXO1 possesses deNADding and exonuclease activities and its mutation affects defense-related and photosynthetic gene expression. (2019) (18)
- Construction and analysis of a plant transformation binary vector pBDGG harboring a bi-directional promoter fusing dual visible reporter genes. (2008) (18)
- A partial loss-of-function mutation in an Arabidopsis RNA polymerase III subunit leads to pleiotropic defects (2016) (17)
- The plant Mediator and its role in noncoding RNA production (2011) (16)
- Trip to ER (2013) (16)
- Regulation of Female Germline Specification via Small RNA Mobility in Arabidopsis[OPEN] (2020) (16)
- Genome-Wide Transcript and Small RNA Profiling Reveals Transcriptomic Responses to Heat Stress1[OPEN]. (2019) (15)
- Increasing the efficiency of CRISPR/Cas9-based gene editing by suppressing RNAi in plants (2019) (15)
- The MBD7 complex promotes expression of methylated transgenes without significantly altering their methylation status (2017) (14)
- Prevalent cytidylation and uridylation of precursor miRNAs in Arabidopsis (2019) (14)
- Plant microRNAs at a glance. (2010) (13)
- A marked end (2007) (13)
- Structural and biochemical insights into small RNA 3′ end trimming by Arabidopsis SDN1 (2018) (13)
- SPAAC-NAD-seq, a sensitive and accurate method to profile NAD+-capped transcripts (2021) (13)
- [Review on plant gene promoters]. (2004) (12)
- RST1 Is a FREE1 Suppressor That Negatively Regulates Vacuolar Trafficking in Arabidopsis. (2019) (11)
- Use of NAD tagSeq II to identify growth phase-dependent alterations in E. coli RNA NAD+ capping (2021) (11)
- Widespread occurrence of microRNA-mediated target cleavage on membrane-bound polysomes (2021) (11)
- Genetic screens for floral mutants in Arabidopsis thaliana: enhancers and suppressors. (2014) (10)
- Spatiotemporal control of miR398 biogenesis via chromatin remodeling and kinase signaling ensures proper ovule development. (2021) (10)
- Development of a luciferase-based reporter of transcriptional gene silencing that enables bidirectional mutant screening in Arabidopsis thaliana (2012) (10)
- Regulation of ARGONAUTE10 Expression Enables Temporal and Spatial Precision in Axillary Meristem Initiation in Arabidopsis. (2020) (9)
- Secrets of the MIR172 family in plant development and flowering unveiled. (2021) (8)
- Origin, evolution and diversification of plant ARGONAUTE proteins. (2021) (8)
- Construction of a bidirectional promoter and its transient expression in Populus tomentosa (2008) (8)
- Genome-wide mRNA and small RNA transcriptome profiles uncover cultivar- and tissue-specific changes induced by cadmium in Brassica parachinensis (2020) (7)
- Direct photoresponsive inhibition of a p53-like transcription activation domain in PIF3 by Arabidopsis phytochrome B (2021) (7)
- Arabidopsis RBV is a conserved WD40 repeat protein that promotes microRNA biogenesis and ARGONAUTE1 loading (2022) (7)
- RST1 Is a FREE1 Suppressor That Negatively Regulates Vacuolar Trafficking in Arabidopsis (2019) (6)
- A novel method to quantify H+-ATPase-dependent Na+ transport across plasma membrane vesicles. (2007) (6)
- BrpNAC895 and BrpABI449 coregulate the transcription of the afflux-type cadmium transporter BrpHMA2 in Brassica parachinensis (2022) (5)
- Chemical genetic screens using Arabidopsis thaliana seedlings grown on solid medium. (2015) (4)
- High resolution RNA‐seq profiling of genes encoding ribosomal proteins across different organs and developmental stages in Arabidopsis thaliana (2021) (4)
- Arabidopsis AAR2, a conserved splicing factor in eukaryotes, acts in microRNA biogenesis (2022) (4)
- a Putative Exportin-t , Acts Pleiotropically in Arabidopsis Development But Is Dispensable for Viability 1 [ w ] (2003) (3)
- Quality control and evaluation of plant epigenomics data (2021) (3)
- Small RNA metabolism and function in Arabidopsis (2009) (3)
- Arabidopsis ribosomal proteins RPL23aA and RPL23aB are functionally equivalent (2020) (3)
- TRANS-ACTING SIRNA3-derived short interfering RNAs confer cleavage of mRNAs in rice (2021) (3)
- FACTOR 3 integrates the functions of AGAMOUS and APETALA 2 in floral meristem determinacy (2014) (3)
- Distinct Evolutionary Profiles and Functions of microRNA156 and microRNA529 in Land Plants (2021) (3)
- Correction: DNA Topoisomerase 1α Promotes Transcriptional Silencing of Transposable Elements through DNA Methylation and Histone Lysine 9 Dimethylation in Arabidopsis (2015) (3)
- The THO Complex Non-Cell-Autonomously Represses Female Germline Specification through the TAS3-ARF3 Module (2020) (2)
- Plant cytoplasmic ribosomal proteins: an update on classification, nomenclature, evolution and resources. (2022) (2)
- The choice of isozyme markers in Pinus tabulaeformis carr. (1999) (2)
- Protein Arginine Methyltransferase 3 Fine-tunes the Assembly/Disassembly of Pre-Ribosome to Repress Nucleolar Stress by Interacting with RPS2B in Arabidopsis. (2020) (2)
- Author Correction: The disease resistance protein SNC1 represses the biogenesis of microRNAs and phased siRNAs (2019) (2)
- Microtubules Promote the Non-cell Autonomy of MicroRNAs by Inhibiting their Cytoplasmic Loading into ARGONAUTE1 in Arabidopsis (2021) (2)
- Mechanism for the genomic and functional evolution of the miR2118 family in the grass lineage. (2021) (2)
- Arabidopsis paralogous genes RPL23aA and RPL23aB encode functionally equivalent proteins (2020) (2)
- Author Correction: PANDORA-seq expands the repertoire of regulatory small RNAs by overcoming RNA modifications (2021) (2)
- Biogenesis of a young, 22-nt microRNA in Phaseoleae species by precursor-programmed uridylation (2018) (2)
- Parallel analysis of RNA ends reveals global microRNA‐mediated target RNA cleavage in maize (2022) (1)
- miR172 modulates the output of the AGAMOUS/APETALA2 antagonistic pair in floral patterning (2006) (1)
- Special issue on plant epigenetics. (2014) (1)
- An updated nomenclature for plant ribosomal protein genes (2022) (1)
- Effects of jasmonic acid on salt tolerance of suspension-cultured Populus euphratica cells (2002) (1)
- Anterograde signaling controls plastid transcription via sigma factors separately from nuclear photosynthesis genes (2022) (1)
- Endogenous Small RNA Pathways in Arabidopsis (2009) (1)
- Correction (2012) (1)
- ID1 functions as an autonomous phosphate (Pi) regulator upstream of the miR399-ZmPHO2 signaling module in maize (2022) (1)
- A spontaneous thermo-sensitive female sterility mutation in rice enables fully mechanized hybrid breeding (2022) (1)
- Article, Discoveries Ancient origin and recent innovations of RNA Polymerase IV and V (2015) (0)
- RNA-seq analysis on Arabidopsis ago1-27 mutant (2017) (0)
- RBV, an evolutionarily conserved WD40 repeat protein, promotes microRNA biogenesis and loading into ARGONAUTE1 in Arabidopsis (2021) (0)
- Arabidopsis A Histone Acetyltransferase Regulates Active DNA Demethylation in (2012) (0)
- Correction: ARGONAUTE10 promotes the degradation of miR165/6 through the SDN1 and SDN2 exonucleases in Arabidopsis. (2021) (0)
- Widespread occurrence of microRNA-mediated target cleavage on membrane-bound polysomes (2021) (0)
- Construction of high-quality rice ribosome footprint library v1 (2019) (0)
- Genome-wide analysis of microRNAs in rubber tree (Hevea brasiliensis L.) using high-throughput sequencing (2012) (0)
- Author Correction: The disease resistance protein SNC1 represses the biogenesis of microRNAs and phased siRNAs (2019) (0)
- Plant and animal small RNA communications between cells and organisms (2021) (0)
- MicroRNA156 conditions auxin sensitivity to enable growth plasticity in response to environmental changes in Arabidopsis (2023) (0)
- Increasing the efficiency of CRISPR/Cas9-based gene editing by suppressing RNAi in plants (2019) (0)
- ZMP recruits and excludes Pol IV–mediated DNA methylation in a site-specific manner (2022) (0)
- Arabidopsis paralogous genes RPL23aA and RPL23aB encode functionally equivalent proteins (2020) (0)
- The lnitiation Codon Determines the Efficiency but Not the Site of Translation lnitiation in Chlamydomonas Chloroplasts (2002) (0)
- Intercellular and systemic trafficking of RNAs in plants (2018) (0)
- The disease resistance protein SNC1 represses the biogenesis of microRNAs and phased siRNAs (2018) (0)
- PANDORA-seq expands the repertoire of regulatory small RNAs by overcoming RNA modifications (2021) (0)
- Structural and biochemical insights into small RNA 3′ end trimming by Arabidopsis SDN1 (2018) (0)
- Arabidopsis Degradation of microRNAs by a Family of Exoribonucleases in (2014) (0)
- Cultivar- and tissue-specific transcriptomic changes induced by cadmium in Brassica parachinensis (2019) (0)
- The N-terminal extension of Arabidopsis ARGONAUTE 1 is essential for microRNA activities (2022) (0)
- Uridylation and adenylation of RNAs (2015) (0)
- Profiling of Single-cell-type-specific MicroRNAs in Arabidopsis Roots by Immunoprecipitation of Root Cell-layer-specific GFP-AGO1. (2022) (0)
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